Citrus Sinensis ID: 023118

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MKALTYGSTLQFSTSVGGEIGSFNQNCKRQQTQQHFINLNPLKLKRHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKRR
Secondary Structure (PSIPRED)
ccccccccEEEEccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHcccEEEEEccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEccEEccccccccccEEEEcccccccccccEEEEEcccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccccHcHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHcccEEEEccccHHHcHHHHHHHHHHcEEEEEccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHccEEEEcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mkaltygstlqfstsvggeigsfnqnckRQQTQQHfinlnplklkrhrtlnlvpahvskdsnahdvesgtfcdsldgKWLLKAKgrevascldGQCLFLVGmmgsgkttVGEILSDaldytfadSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQqvvatgggavvrplNWRFMRQGITVFLNVPLDALARRIAavgtdsfplldydsadsYTKAFTALSALSKERSEAYANADATVSLLNLAACIglkdvlditpTTIAMEVLVQAQKYLNSKRR
Flexible Loop (DISEMBL)
mkaltygstlqfstsvgGEIGSFNQNCKRQQTQQHFINLNPLKLKRHRTLNLVPAhvskdsnahdvesGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKRR
Low Complexity Region (SEG)
MKALTYGSTLQFSTSVGGEIGSFNQNCKRQQTQQHFINLNPLKLKRHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLvpqqvvatgggavvRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKRR
Disordered region (IsUnstruct)
******************EIGSFNQNC****TQQHFINLNPLKLKRHRTLNLVPAHV*******DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY******
Disordered Region (DISOPRED)
********************************************************************************************DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA**YL*****
Disordered Region (DISEMBL)
MKALTYGSTLQFSTSVGGEIGSFNQNCKRQQTQQHFINLNPLKLKRHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKRR
Disordered Region (DISPRO)
*KALTYGSTLQFSTSVGGEIGSFNQNCKRQQTQQHFINLNPLKLKRHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALTYGSTLQFSTSVGGEIGSFNQNCKRQQTQQHFINLNPLKLKRHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q5NTH3	307	Shikimate kinase 2, chlor	yes	no	0.790	0.739	0.541	3e-64
Q5NTH4	308	Shikimate kinase 1, chlor	no	no	0.790	0.737	0.523	5e-62
Q9SJ05	303	Shikimate kinase 1, chlor	yes	no	0.717	0.679	0.558	5e-60
Q8GY88	300	Shikimate kinase 2, chlor	no	no	0.919	0.88	0.461	5e-59
Q00497	300	Shikimate kinase, chlorop	N/A	no	0.790	0.756	0.5	7e-59
Q7X7H9	287	Shikimate kinase 3, chlor	no	no	0.738	0.738	0.533	8e-59
Q5N4D3	190	Shikimate kinase OS=Synec	yes	no	0.606	0.915	0.369	7e-31
Q31PU5	190	Shikimate kinase OS=Synec	yes	no	0.606	0.915	0.369	7e-31
B0JFW8	190	Shikimate kinase OS=Micro	yes	no	0.599	0.905	0.390	2e-29
Q2JKT7	187	Shikimate kinase OS=Synec	yes	no	0.543	0.834	0.420	3e-27

>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SK2 PE=1 SV=1

 Score =  245 bits (625), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 169/231 (73%), Gaps = 4/231 (1%)

Query: 52  LVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111
           L P +  K S  HD    +  +S+D   LLK K  EV   L+G+C++LVGMMGSGK+TV 
Sbjct: 56  LAPLYCLKASRGHD----SLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVA 111

Query: 112 EILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT 171
           +IL++ L Y+F DSDK VE+ +G  SVAQIFKE  EA+FR+ ES  L+ LS + + VVAT
Sbjct: 112 KILAEVLGYSFFDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVAT 171

Query: 172 GGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALS 231
           GGGAV+RP+NW++M++G++V+L+VPLDALARRIA VGT S PLLD  S+D YT AF+ LS
Sbjct: 172 GGGAVIRPVNWKYMKKGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLS 231

Query: 232 ALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282
            L+++R +AYANADA VSL  +AA  G  DV  +TPT IA+E L++ + ++
Sbjct: 232 MLAEQRGDAYANADARVSLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFV 282

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 7EC: 1

>sp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=SK1 PE=1 SV=1

 Score =  238 bits (606), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 121/231 (52%), Positives = 164/231 (70%), Gaps = 4/231 (1%)

Query: 52  LVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111
           + P    K S  H+    T  +S+D   LLK K  EV   L+G+C++LVGMMGSGK+TVG
Sbjct: 58  VAPLRAKKSSGGHE----TLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVG 113

Query: 112 EILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT 171
           +I+S+ L Y+F DSDK VE+ +G  SVAQIFK   EA+FR+ ES  L+ LS + + VVAT
Sbjct: 114 KIMSEVLGYSFFDSDKLVEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVAT 173

Query: 172 GGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALS 231
           GGGAV+RP+NW++M++G++V+L+VPLDALARRIA VGT S PLLD  S D YT AF+ LS
Sbjct: 174 GGGAVIRPVNWKYMKKGLSVWLDVPLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLS 233

Query: 232 ALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282
            L+++R +AYANAD  VSL  +A+  G  DV  +TPT IA+E   + + ++
Sbjct: 234 MLAEQRGDAYANADVRVSLEEIASKQGHDDVSKLTPTDIAIESFHKIENFV 284

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1 PE=1 SV=2

 Score =  231 bits (589), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 151/206 (73%)

Query: 80  LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139
           +LK K  EV   L+G+ ++LVGMMGSGKTTVG+++S  L YTF D D  +E+ M GTSVA
Sbjct: 88  ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVA 147

Query: 140 QIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDA 199
           +IF   GE +FR  E+ AL+KLS   Q VV+TGGGAV+RP+NW++M +GI+++L+VPL+A
Sbjct: 148 EIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEA 207

Query: 200 LARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGL 259
           LA RIAAVGTDS PLL  +S D+Y+ AF  LSA+  ER EAY NA+A VSL N+AA  G 
Sbjct: 208 LAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGY 267

Query: 260 KDVLDITPTTIAMEVLVQAQKYLNSK 285
           K+V D+TPT IA+E   Q   +L  +
Sbjct: 268 KNVSDLTPTEIAIEAFEQVLSFLEKE 293

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=SK2 PE=1 SV=1

 Score =  228 bits (580), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 179/275 (65%), Gaps = 11/275 (4%)

Query: 17  GGEIGSFNQNCKRQQTQQHF--INLNPLKLKRHRTLNLVPAHVSKDSNAHDVESGTFCDS 74
           G   GS   N +R +  + F  + L   K + HR  +     VS  +++  +E+G+   S
Sbjct: 22  GKPRGSLRYNTQRIKEDKRFRVVALTLDKRRDHRLRS-----VSDKNSSALLETGSLLHS 76

Query: 75  L--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL 132
              + + +LK K  EV   L+G+ ++LVGMMGSGKTTVG+I++ +L YTF D D  +E+ 
Sbjct: 77  PFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQA 136

Query: 133 MGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQ-VVATGGGAVVRPLNWRFMRQGITV 191
           M GTSVA+IF+  GE+ FRE E++AL+KLSL+  Q VV+TGGGAV+RP+NW++M +GI++
Sbjct: 137 MKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISI 196

Query: 192 FLNVPLDALARRIAAVGTDSFPLL-DYDSADSYTKAFTALSALSKERSEAYANADATVSL 250
           +L+VPL+ALA RIAAVGT S PLL D +S D+YT A   LS +   R EAY  A A VSL
Sbjct: 197 WLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSL 256

Query: 251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285
            N+   +G + V D+TP  IA+E   Q Q YL  +
Sbjct: 257 ENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 291

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1 SV=1

 Score =  227 bits (579), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 114/228 (50%), Positives = 157/228 (68%), Gaps = 1/228 (0%)

Query: 59  KDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118
           ++  A  +ESG F  S+D    LK K  EV   LDG+C++LVGMMG GKTTVG IL++ L
Sbjct: 69  QNVQASVLESGCFSASIDEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETL 128

Query: 119 DYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVR 178
            Y+F D D+ +E+ +GG +VA+IF+  GE++FR+ E++ L KLSL+ + VV+TGGGAVVR
Sbjct: 129 GYSFFDCDRLIEQAVGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGGAVVR 188

Query: 179 PLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS 238
           P+NWR M +GI+V+L+VPL+ALA+RI   GT S PLL  +S D Y      L+ L + R 
Sbjct: 189 PINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTLMETRG 248

Query: 239 EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR 286
           E YANA A VSL N+A     KDV  ITP  I +EVL+Q + +L +++
Sbjct: 249 ENYANASARVSLENIAL-KREKDVCHITPAEITLEVLIQIENFLKTQK 295

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=SK3 PE=1 SV=2

 Score =  227 bits (578), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 113/212 (53%), Positives = 158/212 (74%)

Query: 74  SLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133
           S D   +LK K  +V   L+ +C++LVGMMGSGKTTVG+IL++ L Y+F DSDK VEK +
Sbjct: 71  SADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAV 130

Query: 134 GGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFL 193
           G +SVA+IF+   EA+FR+ ES+ L+ LS + + VVATGGGAV+RP+NW +M++G T++L
Sbjct: 131 GISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWL 190

Query: 194 NVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNL 253
           +VPLDALARRIAAVGT S PLL  +S D Y KA+  L+AL ++R ++YANADA VSL ++
Sbjct: 191 DVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHI 250

Query: 254 AACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285
           A   G  +V  +TP+ IA+E L++ + +L  K
Sbjct: 251 AVKQGHSNVTTLTPSAIAIEALLKMESFLTEK 282

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroK PE=3 SV=1

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 120/184 (65%), Gaps = 10/184 (5%)

Query: 88  VASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGE 147
           + + L+G  LFLVG+MGSGKTT+G++L+++L YT+ D+D  +E + G  S+ +IF   GE
Sbjct: 3   LVTALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTG-RSIPEIFASDGE 61

Query: 148 AYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAV 207
           A FR+ E++ L++++   + VVATGGG V+RP NW +++QG+ ++L+VP+  L RR+   
Sbjct: 62  AGFRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLE-- 119

Query: 208 GTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL-LNLAACIGLKDVLDIT 266
           G  + PLL  ++        T L AL ++R + YA AD  +++  +    + ++ +L++ 
Sbjct: 120 GDQNRPLLQTEA------PATTLQALWEQRRDRYAQADLRIAIEASEDPEVTMQRILEVI 173

Query: 267 PTTI 270
           P+ +
Sbjct: 174 PSVL 177

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=aroK PE=3 SV=1

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 120/184 (65%), Gaps = 10/184 (5%)

Query: 88  VASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGE 147
           + + L+G  LFLVG+MGSGKTT+G++L+++L YT+ D+D  +E + G  S+ +IF   GE
Sbjct: 3   LVTALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTG-RSIPEIFASDGE 61

Query: 148 AYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAV 207
           A FR+ E++ L++++   + VVATGGG V+RP NW +++QG+ ++L+VP+  L RR+   
Sbjct: 62  AGFRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLE-- 119

Query: 208 GTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL-LNLAACIGLKDVLDIT 266
           G  + PLL  ++        T L AL ++R + YA AD  +++  +    + ++ +L++ 
Sbjct: 120 GDQNRPLLQTEA------PATTLQALWEQRRDRYAQADLRIAIEASEDPEVTMQRILEVI 173

Query: 267 PTTI 270
           P+ +
Sbjct: 174 PSVL 177

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|B0JFW8|AROK_MICAN Shikimate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=aroK PE=3 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 10/182 (5%)

Query: 90  SCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAY 149
           + L G  +FL+GMMGSGK+T+GE+LS  L Y F D+D  +E+ + G  + +IF + GEA 
Sbjct: 8   NSLRGLSVFLLGMMGSGKSTLGELLSRRLQYRFFDTDILIER-VAGKKIREIFVDEGEAT 66

Query: 150 FREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGT 209
           FRE E++ L +LS + + V+ATGGG V++P+NW ++R G+ ++L+VPL+ L +R+     
Sbjct: 67  FRELETQVLAELSSLTKTVIATGGGMVLKPMNWSYLRHGLMIWLDVPLEILVKRLKQ--D 124

Query: 210 DSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGL-KDVLDITPT 268
            S PLL     DS       L  L ++R   YA AD  + + +L     + + +L   PT
Sbjct: 125 TSRPLLQSTDLDS------KLELLLEQRRGLYAEADLRIVVSDLDTPTDIVEKILTAIPT 178

Query: 269 TI 270
            I
Sbjct: 179 VI 180

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=aroK PE=3 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 99/164 (60%), Gaps = 8/164 (4%)

Query: 87  EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESG 146
           E    L G  ++L+GMMGSGK+TVG  L+  L + F D+D  VE++ GG+S+AQIF E G
Sbjct: 5   EEVERLRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLVEQV-GGSSIAQIFAEHG 63

Query: 147 EAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAA 206
           EAYFR+ E++ L +LS   + V+ATGGG V+RP NW ++  G+TV+L+V  + + +R+  
Sbjct: 64  EAYFRDLETQVLAQLSSYTRLVIATGGGIVLRPKNWSYLHHGLTVWLDVAPELIWQRLKR 123

Query: 207 VGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL 250
                 PLL      +      AL  L +ER   YA AD  V +
Sbjct: 124 -DPGQRPLLQTPDPQA------ALYKLMQEREPFYAQADVRVPI 160

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
225463131	292	PREDICTED: shikimate kinase, chloroplast	0.836	0.821	0.655	7e-88
147856126	294	hypothetical protein VITISV_016550 [Viti	0.836	0.816	0.647	2e-87
255572361	282	Shikimate kinase, chloroplast precursor,	0.923	0.939	0.554	2e-78
356509036	299	PREDICTED: shikimate kinase, chloroplast	0.825	0.792	0.535	1e-67
380505030	298	shikimate kinase, partial [Ipomoea purpu	0.926	0.892	0.509	3e-67
255646624	299	unknown [Glycine max]	0.825	0.792	0.531	6e-67
222136867	300	shikimate kinase [Vitis vinifera]	0.898	0.86	0.501	1e-66
225438559	301	PREDICTED: shikimate kinase, chloroplast	0.898	0.857	0.501	1e-66
224066583	223	shikimate kinase [Populus trichocarpa] g	0.766	0.986	0.599	1e-65
356525535	295	PREDICTED: shikimate kinase, chloroplast	0.843	0.820	0.512	3e-65

>gi|225463131|ref|XP_002265897.1| PREDICTED: shikimate kinase, chloroplastic [Vitis vinifera] gi|297739345|emb|CBI29335.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (844), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 198/241 (82%), Gaps = 1/241 (0%)

Query: 46  RHRTLNL-VPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMG 104
           R R ++L + +H  KDS A  VESG F    DG WLLK KG+EVAS L+G+C+FLVGMMG
Sbjct: 45  RQRRVSLGISSHYCKDSQAPAVESGNFYACFDGNWLLKKKGQEVASNLNGRCIFLVGMMG 104

Query: 105 SGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLV 164
           SGKTTVG+ILS+AL Y+F DSD +VEK +GGTSV+QIF + GE +FR+YES+AL+KL+ +
Sbjct: 105 SGKTTVGKILSEALGYSFVDSDTFVEKAVGGTSVSQIFNQCGEKFFRDYESEALRKLASI 164

Query: 165 PQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT 224
           P+QVVATGGGAVVRP+NW++M+QG++VFL+VPLD LARRIA VGTDS PLL ++S D+YT
Sbjct: 165 PKQVVATGGGAVVRPINWKYMKQGVSVFLDVPLDTLARRIADVGTDSRPLLHFESGDAYT 224

Query: 225 KAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284
           KAF  L  LSK+R+EAYANADATVSL ++AA +GL+D+ DITP  IAMEVLVQ + YL  
Sbjct: 225 KAFVGLFTLSKKRTEAYANADATVSLQHIAARLGLEDISDITPAAIAMEVLVQIENYLQG 284

Query: 285 K 285
           K
Sbjct: 285 K 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856126|emb|CAN80290.1| hypothetical protein VITISV_016550 [Vitis vinifera]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/241 (64%), Positives = 197/241 (81%), Gaps = 1/241 (0%)

Query: 46  RHRTLNL-VPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMG 104
           R R ++L + +H  KDS A  VESG F    DG WLLK KG+EVAS L+G+C+FLVGMMG
Sbjct: 45  RQRRVSLGISSHYCKDSQAPAVESGNFYACFDGNWLLKKKGQEVASNLNGRCIFLVGMMG 104

Query: 105 SGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLV 164
           SGKTTVG+ILS+ L Y+F DSD +VEK +GGTSV+QIF + GE +FR+YES+AL+KL+ +
Sbjct: 105 SGKTTVGKILSEXLGYSFVDSDTFVEKAVGGTSVSQIFNQCGEKFFRDYESEALRKLASI 164

Query: 165 PQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT 224
           P+QVVATGGGAVVRP+NW++M+QG++VFL+VPLD LARRIA VGTDS PLL ++S D+YT
Sbjct: 165 PKQVVATGGGAVVRPINWKYMKQGVSVFLDVPLDXLARRIADVGTDSRPLLHFESGDAYT 224

Query: 225 KAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284
           KAF  L  LSK+R+EAYANADATVSL ++AA +GL+D+ D+TP  IAMEVLVQ + YL  
Sbjct: 225 KAFVGLFTLSKKRTEAYANADATVSLQHIAASLGLEDISDVTPAAIAMEVLVQIENYLQG 284

Query: 285 K 285
           K
Sbjct: 285 K 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572361|ref|XP_002527119.1| Shikimate kinase, chloroplast precursor, putative [Ricinus communis] gi|223533542|gb|EEF35282.1| Shikimate kinase, chloroplast precursor, putative [Ricinus communis]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/283 (55%), Positives = 195/283 (68%), Gaps = 18/283 (6%)

Query: 5   TYGSTLQFSTSVGGE--------IGSFNQNCKRQQTQQHFINLNPLKLKR------HRTL 50
           T    L FS   G E        +  F++ CKR+       N   L+ KR       R  
Sbjct: 3   TSSHALNFSMRTGHERIEVKQNSVIGFSKRCKRK----CIANCGALQRKREYVFVQQRRF 58

Query: 51  NLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTV 110
            +  ++  +D  A  + SG  C S DG WLLK KG++VAS L G C+FLVGMMGSGKTTV
Sbjct: 59  YVGISNACRDPLAPSLLSGNICGSFDGYWLLKTKGKKVASGLKGCCVFLVGMMGSGKTTV 118

Query: 111 GEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVA 170
           G+ILS+AL YTF DSD+YVE+  GG SV+ IF++ GE YFR+ ES+ALQKLS++P+QVVA
Sbjct: 119 GKILSEALGYTFVDSDEYVEQTAGGNSVSHIFQQYGEDYFRDIESEALQKLSIIPRQVVA 178

Query: 171 TGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTAL 230
           TGGG+VVRP+NW++MRQGITVFL+VPLDALARRIAAVGTDS PLL  DS D YTKAF  L
Sbjct: 179 TGGGSVVRPINWKYMRQGITVFLDVPLDALARRIAAVGTDSRPLLHLDSGDPYTKAFMGL 238

Query: 231 SALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAME 273
             LSK+R EAY++AD  VSLL+LA  +G +DV D+ P  IA+ 
Sbjct: 239 FTLSKKRVEAYSDADVIVSLLDLADDLGFEDVSDVGPAAIALR 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509036|ref|XP_003523258.1| PREDICTED: shikimate kinase, chloroplastic-like [Glycine max]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/237 (53%), Positives = 174/237 (73%)

Query: 46  RHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGS 105
           R RT +LV A    +  A  +E G+F  S++ K +LK K +E+   L G+C++LVGMM S
Sbjct: 57  RRRTASLVVACSHNNIPASALEYGSFHSSVEEKLILKIKSQEIEPYLSGRCIYLVGMMAS 116

Query: 106 GKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVP 165
           GKTTVG ILS+AL Y+F DSD  V K +GG SV  IFK  GE +FR  E++ LQK+S++ 
Sbjct: 117 GKTTVGRILSEALSYSFYDSDALVVKEVGGISVTDIFKHYGEPFFRNKETEVLQKVSIMH 176

Query: 166 QQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTK 225
           + +++TGGGAVVRP+NW++M+QGI+V+L+VP++ L +RI A GTDS PLL Y+  D+YTK
Sbjct: 177 RHLISTGGGAVVRPINWKYMQQGISVWLDVPVEVLTQRITAEGTDSRPLLHYEGGDAYTK 236

Query: 226 AFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282
             T LS+L +ERSEAYANA+  VSL N+AA +G +DVLD++PT IAME L Q + +L
Sbjct: 237 TITHLSSLFEERSEAYANANVKVSLENMAAKLGRRDVLDLSPTAIAMEALEQIKGFL 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380505030|gb|AFD62803.1| shikimate kinase, partial [Ipomoea purpurea]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 137/269 (50%), Positives = 183/269 (68%), Gaps = 3/269 (1%)

Query: 22  SFNQNCKRQQTQQHFI--NLNPLKLKR-HRTLNLVPAHVSKDSNAHDVESGTFCDSLDGK 78
           SF++   + +  Q FI  +  P+K K  HR   L  +  S++S A  +ES     SLD  
Sbjct: 30  SFSKCQTKHRRSQMFISCHFQPIKAKSWHRPCLLTASCSSQNSQASIMESENSLPSLDEI 89

Query: 79  WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138
            +LK+K  E+  CL G+C++LVGMMGSGKTTVG I+++AL Y F D D  +E+ +GGTSV
Sbjct: 90  QVLKSKSEEIEPCLSGRCIYLVGMMGSGKTTVGRIIAEALGYAFFDCDTLIEQAVGGTSV 149

Query: 139 AQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLD 198
           A+IFK  GE +FR+ E++ L+KLSL+ + VV+TGGGAVVRP+NWR+M +GI+V+L+VP+D
Sbjct: 150 AEIFKLHGEGFFRDNETEVLRKLSLMREVVVSTGGGAVVRPINWRYMHKGISVWLDVPVD 209

Query: 199 ALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIG 258
           ALARRI+AVGT S PLL  +S D Y K    LS L  ER +AYAN+ A V L N+AA  G
Sbjct: 210 ALARRISAVGTHSRPLLHNESGDIYAKTLKRLSTLLDERGDAYANSKARVCLENIAAKSG 269

Query: 259 LKDVLDITPTTIAMEVLVQAQKYLNSKRR 287
             DV  ITPT IA+E LVQ   +L  + R
Sbjct: 270 CIDVCTITPTEIAIEALVQIGNFLKKESR 298

Source: Ipomoea purpurea

Species: Ipomoea purpurea

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646624|gb|ACU23786.1| unknown [Glycine max]

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 126/237 (53%), Positives = 174/237 (73%)

Query: 46  RHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGS 105
           R RT +LV A    +  A  +E G+F  S++ K +LK K +E+   L G+C++LVGMM S
Sbjct: 57  RRRTASLVVACSHNNIPASALEYGSFHSSVEEKLILKIKSQEIEPYLSGRCIYLVGMMAS 116

Query: 106 GKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVP 165
           GKTTVG ILS+AL Y+F DSD  V K +GG SV  IFK  GE +FR  E++ LQK+S++ 
Sbjct: 117 GKTTVGRILSEALSYSFYDSDALVVKEVGGISVTDIFKHYGEPFFRNKETEVLQKVSIMH 176

Query: 166 QQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTK 225
           + +++TGGGAVVRP++W++M+QGI+V+L+VP++ L +RI A GTDS PLL Y+  D+YTK
Sbjct: 177 RHLISTGGGAVVRPIDWKYMQQGISVWLDVPVEVLTQRITAEGTDSRPLLHYEGGDAYTK 236

Query: 226 AFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282
             T LS+L +ERSEAYANA+  VSL N+AA +G +DVLD++PT IAME L Q + +L
Sbjct: 237 TITHLSSLFEERSEAYANANVKVSLENMAAKLGRRDVLDLSPTAIAMEALEQIKGFL 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222136867|gb|ACM45083.1| shikimate kinase [Vitis vinifera]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 183/263 (69%), Gaps = 5/263 (1%)

Query: 23  FNQNCKRQQTQQ---HFINLNPLKLKRHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKW 79
           F+Q  + Q       HF        ++H  L    ++  ++  A  +ESG+F  SLD   
Sbjct: 30  FSQKLREQHGHPISCHFQPRRTSNWQKHVALEASGSY--RNFPAPILESGSFPPSLDEAL 87

Query: 80  LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139
           +LK K +E+   +DG+C++LVGMMGSGKTT+G+ILS+ L Y+F DSD  VE  + GTSVA
Sbjct: 88  ILKNKSQEILPYIDGRCVYLVGMMGSGKTTIGKILSEVLGYSFCDSDTLVELAVKGTSVA 147

Query: 140 QIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDA 199
           +IF   GE +FR  ES+ LQKLSL    VV+TGGGAV+RP+NW++M +GI+V+L+VPL+A
Sbjct: 148 EIFNLYGEGFFRNKESETLQKLSLTHHMVVSTGGGAVIRPINWKYMAKGISVWLDVPLEA 207

Query: 200 LARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGL 259
           LARRI+AVGT+S PLL +DS D+Y +  T LS L KER +AYANA+A VSL  +AA +G 
Sbjct: 208 LARRISAVGTNSRPLLHHDSGDAYNRTLTRLSNLWKERGDAYANANARVSLEEIAAKLGH 267

Query: 260 KDVLDITPTTIAMEVLVQAQKYL 282
           +DV ++TPT IA+E L+Q + +L
Sbjct: 268 RDVTNLTPTVIAIEALLQIEAFL 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438559|ref|XP_002279932.1| PREDICTED: shikimate kinase, chloroplastic [Vitis vinifera] gi|147772563|emb|CAN67344.1| hypothetical protein VITISV_038221 [Vitis vinifera] gi|296082504|emb|CBI21509.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 183/263 (69%), Gaps = 5/263 (1%)

Query: 23  FNQNCKRQQTQQ---HFINLNPLKLKRHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKW 79
           F+Q  + Q       HF        ++H  L    ++  ++  A  +ESG+F  SLD   
Sbjct: 30  FSQKLREQHGHPISCHFQPRRTSNWQKHVALEASGSY--RNFPAPILESGSFPPSLDEAL 87

Query: 80  LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139
           +LK K +E+   +DG+C++LVGMMGSGKTT+G+ILS+ L Y+F DSD  VE  + GTSVA
Sbjct: 88  ILKNKSQEILPYIDGRCVYLVGMMGSGKTTIGKILSEVLGYSFCDSDTLVELAVKGTSVA 147

Query: 140 QIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDA 199
           +IF   GE +FR  ES+ LQKLSL    VV+TGGGAV+RP+NW++M +GI+V+L+VPL+A
Sbjct: 148 EIFNLYGEGFFRNKESETLQKLSLTHHMVVSTGGGAVIRPINWKYMAKGISVWLDVPLEA 207

Query: 200 LARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGL 259
           LARRI+AVGT+S PLL +DS D+Y +  T LS L KER +AYANA+A VSL  +AA +G 
Sbjct: 208 LARRISAVGTNSRPLLHHDSGDAYNRTLTRLSNLWKERGDAYANANARVSLEEIAAKLGH 267

Query: 260 KDVLDITPTTIAMEVLVQAQKYL 282
           +DV ++TPT IA+E L+Q + +L
Sbjct: 268 RDVTNLTPTVIAIEALLQIEAFL 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066583|ref|XP_002302148.1| shikimate kinase [Populus trichocarpa] gi|222843874|gb|EEE81421.1| shikimate kinase [Populus trichocarpa]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/222 (59%), Positives = 167/222 (75%), Gaps = 2/222 (0%)

Query: 66  VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADS 125
           +ESG      D + LLK K +E+A CL+  C+FL+GMMG GKTTVG++LS+AL Y F DS
Sbjct: 1   MESGDLYAFFDER-LLKKKAKELAPCLNSCCIFLIGMMGCGKTTVGKVLSEALGYAFVDS 59

Query: 126 DKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFM 185
           D  VE+ +G  SVAQIF++ GE+ FR+ ESKALQ+LSL  QQVVATG GAV+ P+NW +M
Sbjct: 60  DTCVEQAVGEISVAQIFQKHGESVFRDNESKALQELSLKSQQVVATGDGAVLHPINWEYM 119

Query: 186 RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANAD 245
           R+GITVFL+VPLDALARRIAAVGTDS PLLD+DS D YTKA   LS L ++R E  ++AD
Sbjct: 120 RKGITVFLDVPLDALARRIAAVGTDSRPLLDFDSGDPYTKALMRLSTLLEKRVEKCSSAD 179

Query: 246 ATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKRR 287
            TVSL  LA  +  +DV  +TPT IA+EVL Q +KYL  K++
Sbjct: 180 VTVSLSKLADDLE-EDVSHLTPTIIAIEVLEQIEKYLRGKKK 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525535|ref|XP_003531380.1| PREDICTED: shikimate kinase, chloroplastic-like [Glycine max]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/242 (51%), Positives = 177/242 (73%)

Query: 44  LKRHRTLNLVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMM 103
           + R RT  L  +    + +A  +ESG+    LD + +LK + +E+   L+G+C++LVGMM
Sbjct: 47  MMRRRTTALEVSCSYGNISASILESGSVRAPLDEELILKNRSQEIQPYLNGRCIYLVGMM 106

Query: 104 GSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSL 163
           GSGKTTVG+I+S  L Y+F DSD  VE+ +GG SVA IFK+ GE +FR  E++ L KLSL
Sbjct: 107 GSGKTTVGKIMSQVLGYSFCDSDALVEEEVGGNSVADIFKQHGETFFRNKETEVLHKLSL 166

Query: 164 VPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSY 223
           + Q V++TGGGAV RP+NW++M +G++V+L+VP++ALA+RIAAVGT+S PLL Y++ D Y
Sbjct: 167 MHQLVISTGGGAVTRPINWKYMHKGVSVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDPY 226

Query: 224 TKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283
           T+AF  LSAL +ER EAYANA+A VSL N+A  +G +DV +++PT IA+E L Q   +L 
Sbjct: 227 TRAFMRLSALFEERGEAYANANARVSLKNIAIKLGKRDVSELSPTDIAIEALEQIDNFLK 286

Query: 284 SK 285
            +
Sbjct: 287 GE 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
UNIPROTKB|Q5NTH3	307	SK2 "Shikimate kinase 2, chlor	0.790	0.739	0.502	1.3e-52
UNIPROTKB|Q5NTH4	308	SK1 "Shikimate kinase 1, chlor	0.790	0.737	0.484	1.1e-50
TAIR|locus:2052586	304	SK1 "shikimate kinase 1" [Arab	0.801	0.756	0.482	3.2e-49
UNIPROTKB|Q7X7H9	287	SK3 "Shikimate kinase 3, chlor	0.738	0.738	0.490	1.4e-48
TAIR|locus:2088469	280	SKL1 "shikimate kinase-like 1"	0.773	0.792	0.297	3.9e-21
TIGR_CMR|GSU_2026	175	GSU_2026 "shikimate kinase" [G	0.512	0.84	0.324	1.8e-14
TIGR_CMR|SPO_1634	195	SPO_1634 "shikimate kinase" [R	0.491	0.723	0.337	2.7e-12
UNIPROTKB|P0A6D7	173	aroK "shikimate kinase I" [Esc	0.498	0.826	0.309	4e-11
TIGR_CMR|BA_4457	165	BA_4457 "shikimate kinase" [Ba	0.501	0.872	0.302	4e-11
UNIPROTKB|P0A6E1	174	aroL [Escherichia coli K-12 (t	0.414	0.683	0.349	2.6e-10

UNIPROTKB|Q5NTH3 SK2 "Shikimate kinase 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 116/231 (50%), Positives = 157/231 (67%)

Query:    52 LVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111
             L P +  K S  HD    +  +S+D   LLK K  EV   L+G+C++LVGMMGSGK+TV 
Sbjct:    56 LAPLYCLKASRGHD----SLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVA 111

Query:   112 EILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXX 171
             +IL++ L Y+F DSDK VE+ +G  SVAQIFKE  EA+FR+ ES  L+ LS         
Sbjct:   112 KILAEVLGYSFFDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVAT 171

Query:   172 XXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALS 231
                   RP+NW++M++G++V+L+VPLDALARRIA VGT S PLLD  S+D YT AF+ LS
Sbjct:   172 GGGAVIRPVNWKYMKKGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLS 231

Query:   232 ALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282
              L+++R +AYANADA VSL  +AA  G  DV  +TPT IA+E L++ + ++
Sbjct:   232 MLAEQRGDAYANADARVSLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFV 282

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

UNIPROTKB|Q5NTH4 SK1 "Shikimate kinase 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 112/231 (48%), Positives = 152/231 (65%)

Query:    52 LVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111
             + P    K S  H+    T  +S+D   LLK K  EV   L+G+C++LVGMMGSGK+TVG
Sbjct:    58 VAPLRAKKSSGGHE----TLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVG 113

Query:   112 EILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXX 171
             +I+S+ L Y+F DSDK VE+ +G  SVAQIFK   EA+FR+ ES  L+ LS         
Sbjct:   114 KIMSEVLGYSFFDSDKLVEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVAT 173

Query:   172 XXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALS 231
                   RP+NW++M++G++V+L+VPLDALARRIA VGT S PLLD  S D YT AF+ LS
Sbjct:   174 GGGAVIRPVNWKYMKKGLSVWLDVPLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLS 233

Query:   232 ALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282
              L+++R +AYANAD  VSL  +A+  G  DV  +TPT IA+E   + + ++
Sbjct:   234 MLAEQRGDAYANADVRVSLEEIASKQGHDDVSKLTPTDIAIESFHKIENFV 284

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

TAIR|locus:2052586 SK1 "shikimate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 113/234 (48%), Positives = 152/234 (64%)

Query:    54 PAHVSKDSNAHD--VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111
             PA    D+N+    +E+G+     D   +LK K  EV   L+G+ ++LVGMMGSGKTTVG
Sbjct:    63 PAVSCSDNNSSGALLETGSVYP-FDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVG 120

Query:   112 EILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXX 171
             +++S  L YTF D D  +E+ M GTSVA+IF   GE +FR  E+ AL+KLS         
Sbjct:   121 KLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVST 180

Query:   172 XXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALS 231
                   RP+NW++M +GI+++L+VPL+ALA RIAAVGTDS PLL  +S D+Y+ AF  LS
Sbjct:   181 GGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLS 240

Query:   232 ALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285
             A+  ER EAY NA+A VSL N+AA  G K+V D+TPT IA+E   Q   +L  +
Sbjct:   241 AIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE 294

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;TAS

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

UNIPROTKB|Q7X7H9 SK3 "Shikimate kinase 3, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 104/212 (49%), Positives = 146/212 (68%)

Query:    74 SLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133
             S D   +LK K  +V   L+ +C++LVGMMGSGKTTVG+IL++ L Y+F DSDK VEK +
Sbjct:    71 SADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAV 130

Query:   134 GGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFL 193
             G +SVA+IF+   EA+FR+ ES+ L+ LS               RP+NW +M++G T++L
Sbjct:   131 GISSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWL 190

Query:   194 NVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNL 253
             +VPLDALARRIAAVGT S PLL  +S D Y KA+  L+AL ++R ++YANADA VSL ++
Sbjct:   191 DVPLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHI 250

Query:   254 AACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285
             A   G  +V  +TP+ IA+E L++ + +L  K
Sbjct:   251 AVKQGHSNVTTLTPSAIAIEALLKMESFLTEK 282

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

TAIR|locus:2088469 SKL1 "shikimate kinase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 70/235 (29%), Positives = 116/235 (49%)

Query:    52 LVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111
             + P+    D +A    S    D +D   ++K K  ++A  L G  +FLVG+  S KT  G
Sbjct:    50 IAPSRSLADQSASTGISVVDSDPID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTG 106

Query:   112 EILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXX 171
             ++L++AL Y + DSD  + +  GG   AQ  KE+ E  F+E E++ L++LS         
Sbjct:   107 KLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCA 166

Query:   172 XXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALS 231
                      N   +R GI+++++VPLD     I A G D      + S  S  + F  L 
Sbjct:   167 GDGAVQSLRNLALLRHGISIWIDVPLD-----ITAKGDDD----SFHSEPS-PELFDTLK 216

Query:   232 ALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR 286
             A  ++  + Y  AD ++SL  +A  +  +D+  +T   IA+E+L + +K    K+
Sbjct:   217 ASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSEDIALEILKEIEKLTRVKK 271

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA;TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006520 "cellular amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|GSU_2026 GSU_2026 "shikimate kinase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 51/157 (32%), Positives = 79/157 (50%)

Query:    93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFRE 152
             DG+ + L G MG+GK+TVG++L+  L Y F+D D  + +   G S+ +IF+  GE  FRE
Sbjct:     6 DGRNVVLTGFMGTGKSTVGKLLARRLGYRFSDLDALIVE-RAGISINEIFERYGEQRFRE 64

Query:   153 YESKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDS 211
              E++A++ L                 P N   +R+ G+ V L   L+ +  R+   G   
Sbjct:    65 LETEAIRSLGGVSGRVVATGGGAVIAPRNRVLLREAGLVVNLTASLEVILSRLK--GDRE 122

Query:   212 FPLLDYDSADSYTKAFTALSALSKERSEAYANADATV 248
              PLL  ++         AL+AL   R  AYA+AD  +
Sbjct:   123 RPLLKSNNTPE------ALAALMTARENAYADADLRI 153

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1634 SPO_1634 "shikimate kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 166 (63.5 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 51/151 (33%), Positives = 74/151 (49%)

Query:    99 LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKAL 158
             +VGMMG+GKT VG  L+  L   F DSD  +E      S+ +IF+  GEA+FR+ ES+ +
Sbjct:    25 MVGMMGAGKTAVGRALAQRLGVPFLDSDAEIESA-ANMSIPEIFERDGEAFFRDRESRVI 83

Query:   159 QKLSLXXXXXXXXXXXXXXRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDY 217
              +L                   N R + + G++V+L   L  L  R+     D+ PLL  
Sbjct:    84 ARLLEGAPCVLSTGGGAFLAEANRRMISEHGVSVWLKADLTVLWNRVRH--KDTRPLLR- 140

Query:   218 DSADSYTKAFTALSALSKERSEAYANADATV 248
              +AD   +A   L AL + R   Y+ AD  V
Sbjct:   141 -TADP--RA--TLRALYEARVPLYSEADLCV 166

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

UNIPROTKB|P0A6D7 aroK "shikimate kinase I" [Escherichia coli K-12 (taxid:83333)]

 Score = 156 (60.0 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 48/155 (30%), Positives = 73/155 (47%)

Query:    97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
             +FLVG MG+GK+T+G  L+  L+  F DSD+ +EK  G   V  +F   GE  FR+ E K
Sbjct:     7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA-DVGWVFDLEGEEGFRDREEK 65

Query:   157 ALQKLS-LXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSF-PL 214
              + +L+                R    R   +G+ V+L   ++   +++A    D   PL
Sbjct:    66 VINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIE---KQLARTQRDKKRPL 122

Query:   215 LDYDSADSYTKAFTALSALSKERSEAYAN-ADATV 248
             L  +     T     L AL+ ER+  Y   AD T+
Sbjct:   123 LHVE-----TPPREVLEALANERNPLYEEIADVTI 152

GO:0016310 "phosphorylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA

TIGR_CMR|BA_4457 BA_4457 "shikimate kinase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 156 (60.0 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 46/152 (30%), Positives = 72/152 (47%)

Query:    97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
             +++ G MG+GKTT+G+ LS  L     D+D+ +E+  G   +  IF E GE  FREYES+
Sbjct:     4 IYITGYMGAGKTTIGKALSKELHMDVVDTDQKIEEKQGKV-IRDIFAEEGEMAFREYESE 62

Query:   157 ALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLL 215
              L  L +              R  N ++M++ G  V+L      +A R+    T   PL 
Sbjct:    63 MLCSLPVDNVIITTGGGIVE-REENRKWMKENGTVVYLYCDPHVIAERLREDTTR--PLF 119

Query:   216 DYDSADSYTKAFTALSALSKERSEAYANADAT 247
                  D++   F +  A  +E   A+ + D T
Sbjct:   120 QKKDIDAFVTKFESRRAYYEE---AHIHIDTT 148

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

UNIPROTKB|P0A6E1 aroL [Escherichia coli K-12 (taxid:83333)]

 Score = 149 (57.5 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 43/123 (34%), Positives = 63/123 (51%)

Query:    95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
             Q LFL+G  G GKTTVG  L+D+L+  F D+D++++  +  T VA+I +    A FR  E
Sbjct:     3 QPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT-VAEIVEREEWAGFRARE 61

Query:   155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQ-GITVFLNVPLDALARRI-AAVGTDSF 212
             + AL+ ++                  N  FM+  GI V+L  P+  L  R+ AA   D  
Sbjct:    62 TAALEAVTAPSTVIATGGGIILTE-FNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLR 120

Query:   213 PLL 215
             P L
Sbjct:   121 PTL 123

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;IMP

GO:0016310 "phosphorylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5NTH3	SK2_ORYSJ	2, ., 7, ., 1, ., 7, 1	0.5411	0.7909	0.7394	yes	no
Q9SJ05	SK1_ARATH	2, ., 7, ., 1, ., 7, 1	0.5582	0.7177	0.6798	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.921
4th Layer	2.7.1.71	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
PLN02199	303	PLN02199, PLN02199, shikimate kinase	8e-81
cd00464	154	cd00464, SK, Shikimate kinase (SK) is the fifth en	4e-45
PRK00131	175	PRK00131, aroK, shikimate kinase; Reviewed	3e-43
COG0703	172	COG0703, AroK, Shikimate kinase [Amino acid transp	3e-41
pfam01202	158	pfam01202, SKI, Shikimate kinase	1e-39
PRK03731	171	PRK03731, aroL, shikimate kinase II; Reviewed	8e-31
PRK13946	184	PRK13946, PRK13946, shikimate kinase; Provisional	3e-29
PRK13947	171	PRK13947, PRK13947, shikimate kinase; Provisional	5e-29
PRK13949	169	PRK13949, PRK13949, shikimate kinase; Provisional	1e-25
PRK13951	488	PRK13951, PRK13951, bifunctional shikimate kinase/	5e-24
PRK13948	182	PRK13948, PRK13948, shikimate kinase; Provisional	5e-21
PRK05057	172	PRK05057, aroK, shikimate kinase I; Reviewed	4e-16
PRK08154	309	PRK08154, PRK08154, anaerobic benzoate catabolism	6e-14
PRK14021	542	PRK14021, PRK14021, bifunctional shikimate kinase/	2e-09
PRK00625	173	PRK00625, PRK00625, shikimate kinase; Provisional	1e-08
pfam13238	128	pfam13238, AAA_18, AAA domain	6e-07
pfam13189	176	pfam13189, Cytidylate_kin2, Cytidylate kinase-like	7e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	1e-04
cd02022	179	cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK,	8e-04
cd02021	150	cd02021, GntK, Gluconate kinase (GntK) catalyzes t	0.002

>gnl|CDD|177850 PLN02199, PLN02199, shikimate kinase

 Score =  246 bits (628), Expect = 8e-81
 Identities = 122/244 (50%), Positives = 167/244 (68%), Gaps = 3/244 (1%)

Query: 43  KLKRHRTLNLVPAHVSKDSNAHDV-ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVG 101
           + +  +   + PA    D+N+  + E+G+     D   +LK K  EV   L+G+ ++LVG
Sbjct: 52  ERRNDQRRAVSPAVSCSDNNSSALLETGSVY-PFDED-ILKRKAEEVKPYLNGRSMYLVG 109

Query: 102 MMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKL 161
           MMGSGKTTVG+++S  L YTF D D  +E+ M GTSVA+IF   GE +FR  E+ AL+KL
Sbjct: 110 MMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKL 169

Query: 162 SLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSAD 221
           S   Q VV+TGGGAV+RP+NW++M +GI+++L+VPL+ALA RIAAVGTDS PLL  +S D
Sbjct: 170 SSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGD 229

Query: 222 SYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281
           +Y+ AF  LSA+  ER EAY NA+A VSL N+AA  G K+V D+TPT IA+E   Q   +
Sbjct: 230 AYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF 289

Query: 282 LNSK 285
           L  +
Sbjct: 290 LEKE 293

Length = 303

>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

 Score =  149 bits (379), Expect = 4e-45
 Identities = 62/159 (38%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           + L+GMMG+GKTTVG +L+ AL   F D D+ +E+   G S+ +IF E GE  FRE E +
Sbjct: 2   IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQ-RAGMSIPEIFAEEGEEGFRELERE 60

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLL 215
            L  L      V+ATGGGAV+R  N R +   GI V+L+   + L  R+A   T   PLL
Sbjct: 61  VLLLLLTKENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKT--RPLL 118

Query: 216 DYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNL 253
             +  +        L  L +ER   Y   AD T+    L
Sbjct: 119 QDEDPER-------LRELLEEREPLYREVADLTIDTDEL 150

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. Length = 154

>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed

 Score =  145 bits (368), Expect = 3e-43
 Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 11/157 (7%)

Query: 94  GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREY 153
           G  + L+G MG+GK+T+G +L+  L Y F D+D  +E   G  S+ +IF+E GEA FRE 
Sbjct: 4   GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG-KSIPEIFEEEGEAAFREL 62

Query: 154 ESKALQKLSLVPQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSF 212
           E + L +L      V++TGGGAV+R  N   +R +G  V+L+   + L RR+      + 
Sbjct: 63  EEEVLAELLARHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLR--RDRNR 120

Query: 213 PLLDYDSADSYTKAFTALSALSKERSEAYA-NADATV 248
           PLL  +           L  L +ER   Y   AD TV
Sbjct: 121 PLLQTN------DPKEKLRDLYEERDPLYEEVADITV 151

Length = 175

>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and metabolism]

 Score =  140 bits (354), Expect = 3e-41
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 12/154 (7%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           + L+G MG+GK+T+G  L+ AL+  F D+D+ +EK  G  S+A+IF+E GE  FR  E++
Sbjct: 5   IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETE 63

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLL 215
            L++L      V+ATGGGAV+   N   ++ +GI V+L+ P + L  R+        PLL
Sbjct: 64  VLKELLEEDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ--RDRKRPLL 121

Query: 216 -DYDSADSYTKAFTALSALSKERSEAYANADATV 248
              D  +        L  L +ER   Y      +
Sbjct: 122 QTEDPREE-------LEELLEERQPLYREVADFI 148

Length = 172

>gnl|CDD|216360 pfam01202, SKI, Shikimate kinase

 Score =  135 bits (342), Expect = 1e-39
 Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 10/149 (6%)

Query: 103 MGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLS 162
           MG+GK+T+G +L+ AL   F D+D+ +EK  G  S+A+IF+E GE  FR  ES+ L++L 
Sbjct: 1   MGAGKSTIGRLLAKALGLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLESEVLKELL 59

Query: 163 LVPQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSAD 221
                V+ATGGGAV+   N   ++  GI V+L+   + L  R+ A    + PLL     +
Sbjct: 60  AEHNAVIATGGGAVLSEENRALLKENGIVVYLDADPEVLLERLKA--DKTRPLLQDKDPE 117

Query: 222 SYTKAFTALSALSKERSEAYANADATVSL 250
                   L  L  ER   Y  A   V  
Sbjct: 118 ------EELLELLFERCPLYEEAADIVVD 140

Length = 158

>gnl|CDD|235153 PRK03731, aroL, shikimate kinase II; Reviewed

 Score =  113 bits (284), Expect = 8e-31
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 95  QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
           Q LFLVG  G GKTTVG  L+ AL Y F D+D++++     T VA+I +  G A FR  E
Sbjct: 3   QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMT-VAEIVEREGWAGFRARE 61

Query: 155 SKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAA 206
           S AL+ ++  P  V+ATGGG ++   N  FMR  GI ++L  P+  LA R+ A
Sbjct: 62  SAALEAVTA-PSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEA 113

Length = 171

>gnl|CDD|184411 PRK13946, PRK13946, shikimate kinase; Provisional

 Score =  109 bits (274), Expect = 3e-29
 Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 85  GREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKE 144
                + L  + + LVG+MG+GK+TVG  L+  L   F D+D  +E+     ++A+IF  
Sbjct: 1   EERARAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIER-AARMTIAEIFAA 59

Query: 145 SGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARR 203
            GE  FR+ E + + +L      V+ATGGGA +       +  +GI+V+L   LD L  R
Sbjct: 60  YGEPEFRDLERRVIARLLKGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWER 119

Query: 204 IAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVS 249
           ++    D+ PLL   +AD        L+ L +ER   YA AD TV+
Sbjct: 120 VS--RRDTRPLL--RTADPK----ETLARLMEERYPVYAEADLTVA 157

Length = 184

>gnl|CDD|184412 PRK13947, PRK13947, shikimate kinase; Provisional

 Score =  108 bits (271), Expect = 5e-29
 Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 99  LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKAL 158
           L+G MG+GKTTVG+ ++  L + F D+DK +EK M G +VA+IF++ GE  FR  E   +
Sbjct: 6   LIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEK-MTGMTVAEIFEKDGEVRFRSEEKLLV 64

Query: 159 QKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDY 217
           +KL+ +   V+ATGGG V+ P N   +R+ G+ + L    + + RR+      S PLL  
Sbjct: 65  KKLARLKNLVIATGGGVVLNPENVVQLRKNGVVICLKARPEVILRRVGK--KKSRPLLMV 122

Query: 218 DSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQ 277
              +   K       L KER   Y  AD T+            D  D+T   +A E++  
Sbjct: 123 GDPEERIK------ELLKEREPFYDFADYTI------------DTGDMTIDEVAEEII-- 162

Query: 278 AQKYLNSKRR 287
            + YL  K  
Sbjct: 163 -KAYLKLKNG 171

Length = 171

>gnl|CDD|140006 PRK13949, PRK13949, shikimate kinase; Provisional

 Score = 99.4 bits (248), Expect = 1e-25
 Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +FLVG MG+GKTT+G+ L+  L  +F D D ++E     T V  IF E GEA FRE E  
Sbjct: 4   IFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKT-VGDIFAERGEAVFRELERN 62

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFM-RQGITVFLNVPLDALARRI 204
            L +++     V++TGGGA     N   M   G TV+L V  + L  R+
Sbjct: 63  MLHEVAEFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRL 111

Length = 169

>gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

 Score =  100 bits (251), Expect = 5e-24
 Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 4/119 (3%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +FLVGMMGSGK+T+G+ +S+ LD  F D D+ +E+   G SV +IF+E GE YFR  E +
Sbjct: 3   IFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER-REGRSVRRIFEEDGEEYFRLKEKE 61

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLL 215
            L++L      VVATGGG V+ P N   +++  T+FL  P + L  R   V T++ PLL
Sbjct: 62  LLRELVERDNVVVATGGGVVIDPENRELLKKEKTLFLYAPPEVLMER---VTTENRPLL 117

Length = 488

>gnl|CDD|184413 PRK13948, PRK13948, shikimate kinase; Provisional

 Score = 87.5 bits (217), Expect = 5e-21
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 11/152 (7%)

Query: 99  LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKAL 158
           L G MG+GK+ +G  LS AL   F D+D+Y+E++ G  S+ +IF+  GEAYFR  E++ +
Sbjct: 15  LAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG-KSIPEIFRHLGEAYFRRCEAEVV 73

Query: 159 QKLSLVPQQVVATGGGAVVRPLN-WRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDY 217
           ++L+ +   V++ GGG  +   N  + + +G  V L    + +  R         PLL  
Sbjct: 74  RRLTRLDYAVISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRP---GDRPLLQV 130

Query: 218 DSADSYTKAFTALSALSKERSEAYANADATVS 249
           +           +  L  ER   Y  A   VS
Sbjct: 131 ED------PLGRIRTLLNEREPVYRQATIHVS 156

Length = 182

>gnl|CDD|235335 PRK05057, aroK, shikimate kinase I; Reviewed

 Score = 74.0 bits (182), Expect = 4e-16
 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 13/155 (8%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +FLVG MG+GK+T+G  L+  L+  F DSD+ +EK   G  +  +F   GE  FR+ E K
Sbjct: 7   IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADIGWVFDVEGEEGFRDREEK 65

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNW-RFMRQGITVFLNVPLDALARRIAAVGTDS-FPL 214
            + +L+     V+ATGGG+V       R   +G+ V+L   ++   +++A    D   PL
Sbjct: 66  VINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIE---KQLARTQRDKKRPL 122

Query: 215 LDYDSADSYTKAFTALSALSKERSEAYAN-ADATV 248
           L  D           L AL+ ER+  Y   AD T+
Sbjct: 123 LQVDDPR------EVLEALANERNPLYEEIADVTI 151

Length = 172

>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 10/152 (6%)

Query: 99  LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKAL 158
           L+G+ G+GK+T+G +L+  L   F + ++ +E+   G SV++IF   G+  +R  E +AL
Sbjct: 138 LIGLRGAGKSTLGRMLAARLGVPFVELNREIER-EAGLSVSEIFALYGQEGYRRLERRAL 196

Query: 159 QKLSLVPQQVV-ATGGGAVVRPLNW-RFMRQGITVFLNVPLDALARRIAAVGTDSFPLLD 216
           ++L    +++V ATGGG V  P  +   +    TV+L    +    R+ A G D  P+ D
Sbjct: 197 ERLIAEHEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQG-DLRPMAD 255

Query: 217 YDSADSYTKAFTALSALSKERSEAYANADATV 248
                    A   L  +   R   YA ADA V
Sbjct: 256 NRE------AMEDLRRILASREPLYARADAVV 281

Length = 309

>gnl|CDD|184458 PRK14021, PRK14021, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 99  LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKAL 158
           ++GMMG+GKT VG+ ++  +   FAD+D  +E+ + G S+   F+E GE  FRE E+  +
Sbjct: 11  IIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI-GMSIPSYFEEYGEPAFREVEADVV 69

Query: 159 QKLSLVPQQVVATGGGAVVRPLNWRFMRQ-----GITVFLNV-PLDALARRIAAVGTDSF 212
             +      + + GGGA + P     +       G  V+L+  P +A+ R   A      
Sbjct: 70  ADMLEDFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMER---ANRGGGR 126

Query: 213 PLLDYDSADSYTKAF 227
           P+L+ D+   + K F
Sbjct: 127 PMLNGDANKRWKKLF 141

Length = 542

>gnl|CDD|134335 PRK00625, PRK00625, shikimate kinase; Provisional

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGG---TSVAQIFKESGEAYFREY 153
           +FL G+   GKT+ G+ L+  L   F D+D  +     G   +S  +I++  GE  F   
Sbjct: 3   IFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCRE 62

Query: 154 ESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGIT-VFLNVPLDALARRI 204
           E  AL  L ++P  +VA GGG ++   ++  +R     V L++P+  + +R+
Sbjct: 63  EFLALTSLPVIP-SIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRL 113

Length = 173

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 12/132 (9%)

Query: 98  FLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA 157
            + G  GSGKTT+ + L++ L        + + K  G   V ++ +E  +   R  E K 
Sbjct: 2   LITGTPGSGKTTLAKELAERLGDVL----RDLAKENG--LVLELDEEITDESKRLDEDKL 55

Query: 158 LQKLSLVPQQV--VATGGGAVV--RPLNWRFMR--QGITVFLNVPLDALARRIAAVGTDS 211
            + L  + + +  +A G   ++          R    + V L    + L  R+   G   
Sbjct: 56  AKLLDKLEKIIEELAEGENVIIDGHLAELELERFKDLVFVVLRADPEELLERLKKRGYSE 115

Query: 212 FPLLDYDSADSY 223
             + + D A+  
Sbjct: 116 EKISENDEAEIL 127

Length = 128

>gnl|CDD|221968 pfam13189, Cytidylate_kin2, Cytidylate kinase-like family

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 12/61 (19%)

Query: 103 MGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESG--EAYFREYESKALQK 160
            GSG   +G+ L++ L   + D +           + +  KESG  E  F  Y+ KA   
Sbjct: 8   FGSGGREIGKKLAEKLGIPYYDREI----------LDEAAKESGISEEEFERYDEKAPNS 57

Query: 161 L 161
           L
Sbjct: 58  L 58

This family includes enzymes related to cytidylate kinase. Length = 176

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 98  FLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA 157
            + G  GSGK+T+ + L++ L       D  + +            + GE    + + + 
Sbjct: 3   LITGPPGSGKSTLAKKLAEKLGIPVISLDDLLRE------EGLAELDDGELDDIDIDLEL 56

Query: 158 LQKL--SLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRI 204
           L+++   L  Q+ V  G       L        +  FL++PL A   R+
Sbjct: 57  LEEILDELAKQEWVIDGVRESTLELRLEEADLVV--FLDLPLPACRFRL 103

Length = 114

>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 99  LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFRE 152
           L G +GSGK+TV ++L + L     D+DK   ++   GG ++  I +  G     E
Sbjct: 4   LTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLE 58

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis. Length = 179

>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 34/144 (23%)

Query: 96  CLFLVGMMGSGKTTVGEILSDALDYTFADSDKY-----VEKLMGGTSVAQIFKESGEAYF 150
            + ++G+ GSGK+TVG+ L++ L   F D D       + K+  G  +     E    + 
Sbjct: 1   IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLND---EDRWPWL 57

Query: 151 REYESKALQKLSLVPQQVVATGGGAVV---------RPLNWRFMRQGIT------VFLNV 195
           +      L KL+         G G VV         R      +R G        V L+ 
Sbjct: 58  QALTDALLAKLAS-------AGEGVVVACSALKRIYR----DILRGGAANPRVRFVHLDG 106

Query: 196 PLDALARRIAAVGTDSFPLLDYDS 219
           P + LA R+AA      P    DS
Sbjct: 107 PREVLAERLAARKGHFMPADLLDS 130

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PLN02199	303	shikimate kinase	100.0
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	100.0
PRK13948	182	shikimate kinase; Provisional	100.0
PRK13949	169	shikimate kinase; Provisional	100.0
PRK05057	172	aroK shikimate kinase I; Reviewed	99.97
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.97
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.96
PRK13946	184	shikimate kinase; Provisional	99.96
PRK00625	173	shikimate kinase; Provisional	99.96
PRK13947	171	shikimate kinase; Provisional	99.95
PRK00131	175	aroK shikimate kinase; Reviewed	99.93
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.93
PRK03731	171	aroL shikimate kinase II; Reviewed	99.93
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.92
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.91
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.83
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.78
PRK09169	2316	hypothetical protein; Validated	99.77
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.76
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.74
PRK04182	180	cytidylate kinase; Provisional	99.72
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.69
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.68
PRK03839	180	putative kinase; Provisional	99.67
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.64
PRK05541	176	adenylylsulfate kinase; Provisional	99.61
PRK13975	196	thymidylate kinase; Provisional	99.61
PRK14532	188	adenylate kinase; Provisional	99.6
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.58
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.58
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.57
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.56
PRK03846	198	adenylylsulfate kinase; Provisional	99.54
PRK14530	215	adenylate kinase; Provisional	99.53
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.52
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.5
PRK00889	175	adenylylsulfate kinase; Provisional	99.5
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.5
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.48
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.47
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.47
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.46
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.46
PRK09825	176	idnK D-gluconate kinase; Provisional	99.46
PRK00023	225	cmk cytidylate kinase; Provisional	99.44
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.43
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.42
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.41
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.39
PRK06762	166	hypothetical protein; Provisional	99.38
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.38
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.37
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.37
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.37
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.37
PRK01184	184	hypothetical protein; Provisional	99.35
PRK06217	183	hypothetical protein; Validated	99.35
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.35
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.35
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.35
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.34
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.34
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.34
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.34
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.34
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.34
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.33
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.33
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.33
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.33
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.33
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.33
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.33
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.33
PLN02674	244	adenylate kinase	99.33
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.33
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.32
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.32
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.32
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.32
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.32
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.32
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.32
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.32
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.32
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.32
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.32
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.32
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.32
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.32
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.31
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.31
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.31
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.31
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.31
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.31
PRK10908	222	cell division protein FtsE; Provisional	99.31
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.31
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.31
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.31
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.3
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.3
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.3
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.3
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.3
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.3
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.3
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.3
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.3
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.3
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.3
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.3
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.3
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.3
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.3
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.3
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.3
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.29
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.29
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.29
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.29
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.29
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.29
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.29
PRK11545	163	gntK gluconate kinase 1; Provisional	99.29
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.29
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.29
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.28
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.28
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.28
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.28
COG4559	259	ABC-type hemin transport system, ATPase component	99.28
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.28
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.28
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.28
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.28
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.27
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.27
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.27
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.27
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.27
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.27
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.27
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.27
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.27
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.27
PRK06547	172	hypothetical protein; Provisional	99.27
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.27
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.27
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.27
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.27
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.27
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.27
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.27
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.26
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.26
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.26
COG4987	573	CydC ABC-type transport system involved in cytochr	99.26
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.26
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.26
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.26
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.26
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.26
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.25
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.25
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.25
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.25
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.25
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.25
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.25
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.25
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.25
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.25
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.24
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.24
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.24
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.24
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.24
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.24
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.24
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.24
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.24
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.24
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.24
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.24
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.23
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.23
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.23
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.23
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.23
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.23
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.23
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.23
cd03246	173	ABCC_Protease_Secretion This family represents the	99.23
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.23
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.23
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.22
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.22
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.22
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.22
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK08356	195	hypothetical protein; Provisional	99.22
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.22
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.22
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.22
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.22
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.22
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.22
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.22
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.22
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.22
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.21
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.21
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.21
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.21
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.21
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.21
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.21
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.21
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.21
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.21
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.21
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.21
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.2
PRK10938	490	putative molybdenum transport ATP-binding protein	99.2
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.2
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.2
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.2
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.2
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.2
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.2
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.2
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.2
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.2
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.2
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.2
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.19
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.19
PRK11147	635	ABC transporter ATPase component; Reviewed	99.19
PRK14531	183	adenylate kinase; Provisional	99.19
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.19
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.19
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.19
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.19
PRK13808	333	adenylate kinase; Provisional	99.19
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.19
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.19
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.19
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.19
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.19
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.18
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.18
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.18
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.18
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.18
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.18
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.18
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.18
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.17
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.17
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.17
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.17
COG4181	228	Predicted ABC-type transport system involved in ly	99.17
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.17
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.17
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.17
PLN02200	234	adenylate kinase family protein	99.16
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.16
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.15
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.15
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.15
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.15
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.15
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.15
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.15
PRK14526	211	adenylate kinase; Provisional	99.15
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.15
PRK02496	184	adk adenylate kinase; Provisional	99.15
PRK00279	215	adk adenylate kinase; Reviewed	99.14
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.14
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.14
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.14
PRK04040	188	adenylate kinase; Provisional	99.14
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.14
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.14
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.14
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.14
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.13
COG0488	530	Uup ATPase components of ABC transporters with dup	99.13
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.13
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.13
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.13
PRK08233	182	hypothetical protein; Provisional	99.13
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.13
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.13
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.13
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.12
PRK11147	635	ABC transporter ATPase component; Reviewed	99.12
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.12
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.12
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.12
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.12
PRK14527	191	adenylate kinase; Provisional	99.11
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.11
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.11
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.11
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.11
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.11
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.1
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.1
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.1
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.1
PRK10938	490	putative molybdenum transport ATP-binding protein	99.1
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.1
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.09
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.09
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.09
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.08
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.08
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.08
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.08
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.08
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.08
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.07
PRK14528	186	adenylate kinase; Provisional	99.07
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.07
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.07
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.07
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.07
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.06
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.06
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.05
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.05
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.05
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.05
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.04
PTZ00088	229	adenylate kinase 1; Provisional	99.04
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.04
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.04
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.04
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.04
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.04
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.04
COG4988	559	CydD ABC-type transport system involved in cytochr	99.03
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.03
PRK08118	167	topology modulation protein; Reviewed	99.03
COG1123	539	ATPase components of various ABC-type transport sy	99.03
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.03
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.03
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.03
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.03
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.02
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.02
PLN02459	261	probable adenylate kinase	99.02
COG0488	530	Uup ATPase components of ABC transporters with dup	99.01
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.01
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.0
PLN03073	718	ABC transporter F family; Provisional	99.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.0
PRK14529	223	adenylate kinase; Provisional	99.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.0
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.0
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.99
PLN03073	718	ABC transporter F family; Provisional	98.99
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.98
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.98
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.97
PLN03232	1495	ABC transporter C family member; Provisional	98.96
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.96
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.96
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.96
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.95
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.95
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.95
PLN03130	1622	ABC transporter C family member; Provisional	98.95
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.94
PTZ00243	1560	ABC transporter; Provisional	98.93
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.93
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.92
PLN02165	334	adenylate isopentenyltransferase	98.91
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.91
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.91
PLN02422	232	dephospho-CoA kinase	98.91
PRK00300	205	gmk guanylate kinase; Provisional	98.91
PHA02530	300	pseT polynucleotide kinase; Provisional	98.9
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.9
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.9
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.9
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.89
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.89
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.89
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.88
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.88
PRK13409	590	putative ATPase RIL; Provisional	98.87
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.86
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.86
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.85
PLN03211	659	ABC transporter G-25; Provisional	98.85
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.85
PRK05480	209	uridine/cytidine kinase; Provisional	98.85
PLN02842	505	nucleotide kinase	98.84
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.84
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.83
COG1123	539	ATPase components of various ABC-type transport sy	98.83
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.83
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.82
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.81
PRK13973	213	thymidylate kinase; Provisional	98.81
PRK13409	590	putative ATPase RIL; Provisional	98.8
PRK00698	205	tmk thymidylate kinase; Validated	98.79
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.78
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.78
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.77
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.76
PRK14738	206	gmk guanylate kinase; Provisional	98.75
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.75
PRK13974	212	thymidylate kinase; Provisional	98.75
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.75
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.74
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.74
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.73
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.72
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.72
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.72
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.69
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.69
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.68
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.66
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.66
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.66
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.65
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.64
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.63
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.63
PRK07261	171	topology modulation protein; Provisional	98.62
PTZ00451	244	dephospho-CoA kinase; Provisional	98.61
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.6
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.6
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.6
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.6
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.6
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.59
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.58
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.58
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.58
PLN03232	1495	ABC transporter C family member; Provisional	98.57
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.57
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.57
PLN03130	1622	ABC transporter C family member; Provisional	98.54
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	98.54
COG3709	192	Uncharacterized component of phosphonate metabolis	98.54
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.54
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.53
PRK14737	186	gmk guanylate kinase; Provisional	98.52
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.5
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.5
PLN03140	1470	ABC transporter G family member; Provisional	98.5
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.49
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.48
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.47
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.47
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.46
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.45
PF02224	157	Cytidylate_kin: Cytidylate kinase; InterPro: IPR01	98.43
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.43
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.43
PRK06696	223	uridine kinase; Validated	98.42
PRK07933	213	thymidylate kinase; Validated	98.41
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.4
PLN03140	1470	ABC transporter G family member; Provisional	98.38
PRK12338	319	hypothetical protein; Provisional	98.37
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.36
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	98.36
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.36
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.35
COG4172	534	ABC-type uncharacterized transport system, duplica	98.35
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.34
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.33
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.29
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.28

>PLN02199 shikimate kinase

Probab=100.00  E-value=1.1e-56  Score=412.52  Aligned_cols=279  Identities=44%  Similarity=0.698  Sum_probs=258.1

Q ss_pred             cccceeeeecccccc-cccc--cccccccch------hhhhhh--cCccc-cccccccccCCCcCCCCCCCccEEEcceE
Q 023118            5 TYGSTLQFSTSVGGE-IGSF--NQNCKRQQT------QQHFIN--LNPLK-LKRHRTLNLVPAHVSKDSNAHDVESGTFC   72 (287)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~r------~~~~~~--~~~~r-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~   72 (287)
                      .++|+||||+|++++ |+||  ++|++||+|      ++++++  ++|.| .+++++++++++|+ +++++++|+.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~le~~~~~   82 (303)
T PLN02199          4 AITQRIQYPSWVDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCS-DNNSSALLETGSVY   82 (303)
T ss_pred             hhhhheeeeceecHhhhcCCCCCcceehhhccccccceeEEEeccccccccchhhhccccccccC-CCCchhhcccCCCC
Confidence            578999999999999 9988  799999997      678888  89999 78899999999999 66777799999999


Q ss_pred             EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhh
Q 023118           73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFRE  152 (287)
Q Consensus        73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~  152 (287)
                       +|++. .|++++.++.+++.|.+|+|+|++||||||++++||..++++|+|+|.++++...|+++.++|...|++.||+
T Consensus        83 -~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~  160 (303)
T PLN02199         83 -PFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRG  160 (303)
T ss_pred             -CCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHH
Confidence             89876 5999999999999999999999999999999999999999999999999999755999999999999999999


Q ss_pred             hHHHHHHHhhcCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHH
Q 023118          153 YESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSA  232 (287)
Q Consensus       153 ~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~  232 (287)
                      .|.++++++....+.||+||||+|.++.||.+|++|++|||++|++.+++||...+...||++..++++.|.++.+.+.+
T Consensus       161 ~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~  240 (303)
T PLN02199        161 KETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSA  240 (303)
T ss_pred             HHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHH
Confidence            99999999987778999999999999999999999999999999999999998644467999976666667667789999


Q ss_pred             HHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhhcC
Q 023118          233 LSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR  286 (287)
Q Consensus       233 l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~~  286 (287)
                      +|++|.|+|++||++|+++|+|.++||-||+++||++|+.+|++.+.+++++++
T Consensus       241 L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~~  294 (303)
T PLN02199        241 IWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEE  294 (303)
T ss_pred             HHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999998653

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-37  Score=261.31  Aligned_cols=167  Identities=36%  Similarity=0.596  Sum_probs=150.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      ...|+|||+|||||||+++.||+.|+++|+|+|.+|++.. |++|+++|..+|++.||+.|.++++++...++.|+||||
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~-g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG   80 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT-GMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG   80 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH-CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence            4579999999999999999999999999999999999998 999999999999999999999999999988789999999


Q ss_pred             ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118          174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL  251 (287)
Q Consensus       174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~  251 (287)
                      |+|++++|++.|++ |++|||++|+|.+.+|+..  ...||++...+.      .+.+.++|++|.|+|++ ||.++   
T Consensus        81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~--~~~RPll~~~~~------~~~l~~L~~~R~~~Y~e~a~~~~---  149 (172)
T COG0703          81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQR--DRKRPLLQTEDP------REELEELLEERQPLYREVADFII---  149 (172)
T ss_pred             ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhcc--ccCCCcccCCCh------HHHHHHHHHHHHHHHHHhCcEEe---
Confidence            99999999999985 8999999999999999983  357999986542      25689999999999998 67765   


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          252 NLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                               ++++.+ ++++++|+..+..++
T Consensus       150 ---------~~~~~~-~~v~~~i~~~l~~~~  170 (172)
T COG0703         150 ---------DTDDRS-EEVVEEILEALEGSL  170 (172)
T ss_pred             ---------cCCCCc-HHHHHHHHHHHHHhc
Confidence                     666655 999999999987654

>PRK13948 shikimate kinase; Provisional

Probab=100.00  E-value=1e-32  Score=239.67  Aligned_cols=168  Identities=29%  Similarity=0.485  Sum_probs=152.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      +..|+|+|++||||||+++.||..++++|+|+|.++++.. |+++.++|...|+..||+.|.++++++....+.|++|||
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~-g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~Gg   88 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT-GKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGG   88 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH-hCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence            6899999999999999999999999999999999999998 999999999999999999999999999877888999999


Q ss_pred             ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccc
Q 023118          174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLN  252 (287)
Q Consensus       174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~  252 (287)
                      |+++++.|+..|++ |.+|||++|++++.+|+..   ..||++....  +    .+++.++|++|.|+|+.||++|    
T Consensus        89 G~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~---~~RPll~~~~--~----~~~l~~l~~~R~~~Y~~a~~~i----  155 (182)
T PRK13948         89 GTFMHEENRRKLLSRGPVVVLWASPETIYERTRP---GDRPLLQVED--P----LGRIRTLLNEREPVYRQATIHV----  155 (182)
T ss_pred             cEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcC---CCCCCCCCCC--h----HHHHHHHHHHHHHHHHhCCEEE----
Confidence            99999999988875 8999999999999999953   4699986432  2    3678999999999998888876    


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          253 LAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       253 ~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                              ||++.++++++++|++.+..++.
T Consensus       156 --------~t~~~~~~ei~~~i~~~l~~~~~  178 (182)
T PRK13948        156 --------STDGRRSEEVVEEIVEKLWAWAE  178 (182)
T ss_pred             --------ECCCCCHHHHHHHHHHHHHHHhh
Confidence                    78899999999999999987653

>PRK13949 shikimate kinase; Provisional

Probab=100.00  E-value=1.1e-31  Score=230.39  Aligned_cols=166  Identities=31%  Similarity=0.469  Sum_probs=147.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      ..|+|+||+||||||+++.||+.++++|+|.|.++++.+ |.++.++|...|++.||+.|.++++++....+.|+++|||
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~-~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg   80 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF-HKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG   80 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH-CccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence            469999999999999999999999999999999999988 8899999999999999999999999987667889999999


Q ss_pred             eEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEecccc
Q 023118          175 AVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNL  253 (287)
Q Consensus       175 ~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~  253 (287)
                      ++..+.++.+|++ |++|||++|++++.+|+.... ..||++...+.+.   .++.+.++|++|.|+|++||++|     
T Consensus        81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~-~~RP~~~~~~~~~---~~~~i~~l~~~R~~~Y~~ad~~i-----  151 (169)
T PRK13949         81 APCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAK-QQRPLLKGKSDEE---LLDFIIEALEKRAPFYRQAKIIF-----  151 (169)
T ss_pred             ccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCC-CCCCCCCCCChHH---HHHHHHHHHHHHHHHHHhCCEEE-----
Confidence            9999999999975 999999999999999997542 4699886433222   24678999999999999999765     


Q ss_pred             ccccccccCCCCCHHHHHHHHHHH
Q 023118          254 AACIGLKDVLDITPTTIAMEVLVQ  277 (287)
Q Consensus       254 a~~~~~idt~~~t~~eva~~i~~~  277 (287)
                             |+++++|+|++++|++.
T Consensus       152 -------d~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        152 -------NADKLEDESQIEQLVQR  168 (169)
T ss_pred             -------ECCCCCHHHHHHHHHHh
Confidence                   88999999999999875

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.97  E-value=7.5e-30  Score=219.45  Aligned_cols=166  Identities=32%  Similarity=0.507  Sum_probs=148.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      ..+|+|+||+||||||+++.|++.++++|+|+|..+++.. |.++.++|...|+..||..|.++++++....+.|+++||
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~-g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~gg   82 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGG   82 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh-CcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence            5689999999999999999999999999999999998887 899999999999999999999999998877788999999


Q ss_pred             ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118          174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL  251 (287)
Q Consensus       174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~  251 (287)
                      |++.++.++.+|++ |++|||++|++.+.+|+..+  ..||++....  .    .+.+.+++++|.|+|++ ||++|   
T Consensus        83 g~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~--~~rP~~~~~~--~----~~~~~~l~~~R~~~Y~~~Ad~~i---  151 (172)
T PRK05057         83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRD--KKRPLLQVDD--P----REVLEALANERNPLYEEIADVTI---  151 (172)
T ss_pred             chhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCC--CCCCCCCCCC--H----HHHHHHHHHHHHHHHHhhCCEEE---
Confidence            99999999999974 99999999999999999753  4699886422  1    24588999999999998 89876   


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          252 NLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                               ||++++++++++.|++.++.
T Consensus       152 ---------dt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        152 ---------RTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             ---------ECCCCCHHHHHHHHHHHHhh
Confidence                     89999999999999988754

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.97  E-value=6e-30  Score=255.26  Aligned_cols=165  Identities=27%  Similarity=0.424  Sum_probs=149.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      -..|+|+|+|||||||+++.||..++++|+|+|.++++.. |++++++|.++|++.||+.|.++++++....+.||+|||
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~-g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GG   84 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI-GMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGG   84 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence            4679999999999999999999999999999999999998 999999999999999999999999998866788999999


Q ss_pred             ceEeccccHHhh----c-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeE
Q 023118          174 GAVVRPLNWRFM----R-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADAT  247 (287)
Q Consensus       174 G~v~~~~~~~~L----~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~  247 (287)
                      |+|+++.|+.+|    + .|++|||++|++++++|+...  ..||++...   +    .+++.++|++|+|+|++ ||++
T Consensus        85 G~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~--~~RPll~~~---~----~~~~~~l~~~R~~~Y~~~Ad~~  155 (542)
T PRK14021         85 GAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRG--GGRPMLNGD---A----NKRWKKLFKQRDPVFRQVANVH  155 (542)
T ss_pred             chhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCC--CCCCCCCCC---c----HHHHHHHHHHHHHHHHhhCCEE
Confidence            999999999865    4 389999999999999999753  469998542   1    25789999999999998 8998


Q ss_pred             EeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          248 VSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       248 v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      |            ||++.+|++++++|++.+..
T Consensus       156 i------------~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        156 V------------HTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             E------------ECCCCCHHHHHHHHHHHHHh
Confidence            6            78899999999999998865

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.96  E-value=4.6e-30  Score=217.48  Aligned_cols=156  Identities=37%  Similarity=0.553  Sum_probs=135.5

Q ss_pred             CCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCceEeccccH
Q 023118          103 MGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNW  182 (287)
Q Consensus       103 ~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~v~~~~~~  182 (287)
                      |||||||++++||..|+++|+|+|.++++.. |+++.++|...|++.||..|.++++++....+.||+||||+++.+.++
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~-g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~   79 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT-GMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR   79 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHh-CCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence            7999999999999999999999999999998 999999999999999999999999999988799999999999999999


Q ss_pred             Hhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccc
Q 023118          183 RFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLK  260 (287)
Q Consensus       183 ~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~i  260 (287)
                      ++|+ .|.+|||+++++.+.+|+..+..  ||++.....      ...+.+++.+|.|.|+. +++++            
T Consensus        80 ~~L~~~g~vI~L~~~~~~l~~Rl~~~~~--Rp~l~~~~~------~~~~~~~~~~R~~~Y~~~a~~~v------------  139 (158)
T PF01202_consen   80 ELLKENGLVIYLDADPEELAERLRARDN--RPLLKGKME------HEEILELLFEREPLYEQAADIVV------------  139 (158)
T ss_dssp             HHHHHHSEEEEEE--HHHHHHHHHHHCT--SGGTCSHHH------HHHHHHHHHHHHHHHHHHSSEEE------------
T ss_pred             HHHHhCCEEEEEeCCHHHHHHHHhCCCC--CCCCCCCCh------HHHHHHHHHHHHHHHHhcCeEEE------------
Confidence            9998 59999999999999999988653  899874221      12345566699999998 66664            


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 023118          261 DVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       261 dt~~~t~~eva~~i~~~i~  279 (287)
                      |+++.+|++++++|++.|+
T Consensus       140 ~~~~~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  140 DTDGSPPEEIAEEILEFLK  158 (158)
T ss_dssp             ETSSCHHHHHHHHHHHHH-
T ss_pred             eCCCCCHHHHHHHHHHHhC
Confidence            7888888999999999874

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK13946 shikimate kinase; Provisional

Probab=99.96  E-value=1.4e-28  Score=213.32  Aligned_cols=174  Identities=35%  Similarity=0.529  Sum_probs=154.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118           92 LDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT  171 (287)
Q Consensus        92 l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~  171 (287)
                      +....|+|+|++||||||+++.||..++++|+|+|.++++.. |.++.++|...|++.||..|.++++++....+.|+++
T Consensus         8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~-g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~   86 (184)
T PRK13946          8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA-RMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLAT   86 (184)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence            346789999999999999999999999999999999998887 9999999999999999999999999988777889999


Q ss_pred             CCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEec
Q 023118          172 GGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL  250 (287)
Q Consensus       172 ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~  250 (287)
                      |||++..+.++.+|+ .+++|||++|++.+.+|+..+  ..||++...+  +    .+.+.++++.|.|.|..+|+++  
T Consensus        87 ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r--~~rp~~~~~~--~----~~~i~~~~~~R~~~y~~~dl~i--  156 (184)
T PRK13946         87 GGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRR--DTRPLLRTAD--P----KETLARLMEERYPVYAEADLTV--  156 (184)
T ss_pred             CCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCC--CCCCcCCCCC--h----HHHHHHHHHHHHHHHHhCCEEE--
Confidence            999999999999986 589999999999999999865  3578775322  2    2568889999999999888875  


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHHHhhhcC
Q 023118          251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR  286 (287)
Q Consensus       251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~~  286 (287)
                                |+++++++++++.|+++++.+++++.
T Consensus       157 ----------~~~~~~~~~~~~~i~~~i~~~~~~~~  182 (184)
T PRK13946        157 ----------ASRDVPKEVMADEVIEALAAYLEKEE  182 (184)
T ss_pred             ----------ECCCCCHHHHHHHHHHHHHHhhcccc
Confidence                      78899999999999999999988763

>PRK00625 shikimate kinase; Provisional

Probab=99.96  E-value=2e-28  Score=211.11  Aligned_cols=164  Identities=24%  Similarity=0.339  Sum_probs=144.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC----chhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT----SVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT  171 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~----~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~  171 (287)
                      .|+|+|++||||||+++.||..++++|+|.|.++++.. |.    ++.++|...|++.||..|.++++++.. .+.|+++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~-g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~   79 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY-HGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVAL   79 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh-CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEEC
Confidence            58999999999999999999999999999999999987 65    999999999999999999999998875 5679999


Q ss_pred             CCceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEe
Q 023118          172 GGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVS  249 (287)
Q Consensus       172 ggG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~  249 (287)
                      |||++..++++..|+. |++|||++|++.+.+|+..     ||+.....   +   .+.+.++|++|.|.|++ ||++|+
T Consensus        80 GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~-----R~~~~~~~---~---~~~~~~ll~~R~~~Y~~~ad~~i~  148 (173)
T PRK00625         80 GGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQK-----RGLPERLK---H---APSLEEILSQRIDRMRSIADYIFS  148 (173)
T ss_pred             CCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhc-----CCCCcccC---c---HHHHHHHHHHHHHHHHHHCCEEEe
Confidence            9999999999999965 8999999999999999975     45443211   1   25688999999999998 999998


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          250 LLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       250 ~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      +++      +++|+..++.++++.++..+
T Consensus       149 ~~~------~~~~~~~~~~~~~~~~~~~~  171 (173)
T PRK00625        149 LDH------VAETSSESLMRACQSFCTLL  171 (173)
T ss_pred             CCC------cccCCCCCHHHHHHHHHHHh
Confidence            776      45899999999999988765

>PRK13947 shikimate kinase; Provisional

Probab=99.95  E-value=3.7e-27  Score=200.51  Aligned_cols=163  Identities=37%  Similarity=0.582  Sum_probs=143.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      .|+|+|++||||||+++.||..++++|+|+|.++++.. |.++.++|...|+..||..|..+++.+....+.|+++|+|.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~   81 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT-GMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV   81 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc-CCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence            59999999999999999999999999999999998887 99999999999999999999999999887778899999999


Q ss_pred             EeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccc
Q 023118          176 VVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLA  254 (287)
Q Consensus       176 v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a  254 (287)
                      ++++.++..|++ +++|||++|++.+.+|+..+  ..||.....  +.    .+.+.+++++|.+.|+.||+.|      
T Consensus        82 vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r--~~rp~~~~~--~~----~~~i~~~~~~r~~~y~~ad~~I------  147 (171)
T PRK13947         82 VLNPENVVQLRKNGVVICLKARPEVILRRVGKK--KSRPLLMVG--DP----EERIKELLKEREPFYDFADYTI------  147 (171)
T ss_pred             cCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCC--CCCCCCCCC--Ch----HHHHHHHHHHHHHHHHhcCEEE------
Confidence            999988888875 89999999999999999865  347876532  12    3567888999999998888775      


Q ss_pred             cccccccCCCCCHHHHHHHHHH-HHH
Q 023118          255 ACIGLKDVLDITPTTIAMEVLV-QAQ  279 (287)
Q Consensus       255 ~~~~~idt~~~t~~eva~~i~~-~i~  279 (287)
                            ||++.++++++++|.+ ++.
T Consensus       148 ------dt~~~~~~~i~~~I~~~~~~  167 (171)
T PRK13947        148 ------DTGDMTIDEVAEEIIKAYLK  167 (171)
T ss_pred             ------ECCCCCHHHHHHHHHHHHHh
Confidence                  8899999999999998 443

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.93  E-value=7.7e-25  Score=185.40  Aligned_cols=169  Identities=36%  Similarity=0.612  Sum_probs=147.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecC
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATG  172 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~g  172 (287)
                      ++..|.|+|++||||||+++.||..++..|+|.|.++++.. |.++.+++...|+..|+..+..+++++......|+++|
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g   81 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA-GKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTG   81 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence            47899999999999999999999999999999999998887 99999998889999999999999999887666799999


Q ss_pred             CceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEec
Q 023118          173 GGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSL  250 (287)
Q Consensus       173 gG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~  250 (287)
                      +|.+..+.++..|+ .+++|||++|++.+.+|+..+.  .||+.....      ..+.+.+.+.+|.+.|.. +|++|  
T Consensus        82 ~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~--~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~dl~i--  151 (175)
T PRK00131         82 GGAVLREENRALLRERGTVVYLDASFEELLRRLRRDR--NRPLLQTND------PKEKLRDLYEERDPLYEEVADITV--  151 (175)
T ss_pred             CCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCC--CCCcCCCCC------hHHHHHHHHHHHHHHHHhhcCeEE--
Confidence            99999988898884 5899999999999999998754  377665211      125678899999999987 88775  


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                                ||++++|+++++.|++.++.+-
T Consensus       152 ----------dt~~~~~~e~~~~I~~~v~~~~  173 (175)
T PRK00131        152 ----------ETDGRSPEEVVNEILEKLEAAW  173 (175)
T ss_pred             ----------eCCCCCHHHHHHHHHHHHHhhc
Confidence                      8999999999999999998653

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.93  E-value=5.1e-25  Score=205.88  Aligned_cols=175  Identities=30%  Similarity=0.471  Sum_probs=151.9

Q ss_pred             eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhc-C
Q 023118           86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSL-V  164 (287)
Q Consensus        86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~-~  164 (287)
                      -.+.+   +.+|+|+|++||||||+++.|+..++++|+|.|..+++.. |.++.+++...|++.||..|.+.+.++.. .
T Consensus       128 ~~~~~---~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~-G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~  203 (309)
T PRK08154        128 RRAAR---RRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA-GLSVSEIFALYGQEGYRRLERRALERLIAEH  203 (309)
T ss_pred             hhccC---CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhhC
Confidence            34556   8999999999999999999999999999999999999987 99999999999999999999999998754 4


Q ss_pred             CCeEEecCCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023118          165 PQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN  243 (287)
Q Consensus       165 ~~~via~ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~  243 (287)
                      ...|+++|||++..+.++..+. .+++|||++|++.+.+|+..++ +.||+....  ++    .+.+.++++.|.|+|+.
T Consensus       204 ~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~-~~rp~~~~~--~~----~e~i~~~~~~R~~~y~~  276 (309)
T PRK08154        204 EEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQG-DLRPMADNR--EA----MEDLRRILASREPLYAR  276 (309)
T ss_pred             CCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCC-CCCCCCCCC--Ch----HHHHHHHHHHHHHHHHh
Confidence            5689999999998888887775 5899999999999999998764 468876432  22    36688999999999998


Q ss_pred             CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          244 ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       244 ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      +|++|            |++.++++++++.|+..++.++.
T Consensus       277 ad~~I------------~t~~~s~ee~~~~I~~~l~~~~~  304 (309)
T PRK08154        277 ADAVV------------DTSGLTVAQSLARLRELVRPALG  304 (309)
T ss_pred             CCEEE------------ECCCCCHHHHHHHHHHHHHHHhc
Confidence            88875            79999999999999999987754

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.93  E-value=1.4e-24  Score=185.09  Aligned_cols=165  Identities=37%  Similarity=0.583  Sum_probs=140.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      ..|+|+|++||||||+++.||..++++|+|.|.+++... |+++.+++...|+..||..|.+.++.+.. ...|+++|||
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~-g~~~~~~~~~~g~~~~~~~e~~~~~~~~~-~~~vi~~ggg   80 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS-NMTVAEIVEREGWAGFRARESAALEAVTA-PSTVIATGGG   80 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHhcC-CCeEEECCCC
Confidence            579999999999999999999999999999999998887 99999999999999999999999977653 5679999999


Q ss_pred             eEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118          175 AVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL  251 (287)
Q Consensus       175 ~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~  251 (287)
                      +|+++.++.+|++ |++|||++|++.+.+|+..+.. ..||.+...+   +   .+.+.+.+++|.+.|.. ++++|   
T Consensus        81 ~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~---~---~~~~~~~~~~r~~~y~~~a~~~I---  151 (171)
T PRK03731         81 IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKP---I---SEEVAEVLAEREALYREVAHHII---  151 (171)
T ss_pred             ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCC---h---HHHHHHHHHHHHHHHHHhCCEEE---
Confidence            9999999999874 8999999999999999987532 3577664321   1   25578889999999987 66554   


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          252 NLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                               |++ .++++|+.+|+..+.+
T Consensus       152 ---------d~~-~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        152 ---------DAT-QPPSQVVSEILSALAQ  170 (171)
T ss_pred             ---------cCC-CCHHHHHHHHHHHHhc
Confidence                     776 6999999999988753

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.92  E-value=2e-24  Score=212.94  Aligned_cols=157  Identities=36%  Similarity=0.563  Sum_probs=139.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      +|+|+|++||||||+++.||..++++|+|+|.++++.. |+++.++|...|++.||+.|.++++++....+.|++||||+
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~-g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggv   80 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE-GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGV   80 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc-CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcc
Confidence            58999999999999999999999999999999999987 99999999999999999999999999876677899999999


Q ss_pred             EeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEecccccc
Q 023118          176 VVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAA  255 (287)
Q Consensus       176 v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~  255 (287)
                      |.++.++++|+++.+|||++|++++.+|+..+   .||++...        .+++.++|++|.|.|+++ +.        
T Consensus        81 v~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~---~RPLl~~~--------~e~l~~L~~~R~~lY~~~-~~--------  140 (488)
T PRK13951         81 VIDPENRELLKKEKTLFLYAPPEVLMERVTTE---NRPLLREG--------KERIREIWERRKQFYTEF-RG--------  140 (488)
T ss_pred             ccChHHHHHHhcCeEEEEECCHHHHHHHhccC---CCCCcccc--------HHHHHHHHHHHHHHHhcc-cE--------
Confidence            99999999998877999999999999999643   58987531        146788999999999875 22        


Q ss_pred             ccccccCCCCCHHHHHHHHHHH
Q 023118          256 CIGLKDVLDITPTTIAMEVLVQ  277 (287)
Q Consensus       256 ~~~~idt~~~t~~eva~~i~~~  277 (287)
                          ||++++++++++.+|+-.
T Consensus       141 ----IDt~~~s~~e~~~~iv~~  158 (488)
T PRK13951        141 ----IDTSKLNEWETTALVVLE  158 (488)
T ss_pred             ----EECCCCCHHHHHHHHHHH
Confidence                589999999888877543

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.91  E-value=1.9e-23  Score=174.02  Aligned_cols=151  Identities=41%  Similarity=0.645  Sum_probs=129.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      .|+|+|++||||||+++.|+..++++|+|.|.+++... |.++.+++...|++.|+..+.+++..+....+.|+++|+|.
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~   79 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA-GMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA   79 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc-CCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence            38899999999999999999999999999999998887 88899988889999999999998888887778899999999


Q ss_pred             EeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecccc
Q 023118          176 VVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNL  253 (287)
Q Consensus       176 v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~  253 (287)
                      +.++.++..+. .+++|||++|++.+.+|+..++  .||.+...+.       +.+.+++++|.+.|.+ +|+++     
T Consensus        80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~~~~~-------~~~~~~~~~r~~~Y~~~ad~~i-----  145 (154)
T cd00464          80 VLREENRRLLLENGIVVWLDASPEELLERLARDK--TRPLLQDEDP-------ERLRELLEEREPLYREVADLTI-----  145 (154)
T ss_pred             cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCC--CCCCCCCCCH-------HHHHHHHHHHHHHHHHhCcEEE-----
Confidence            88876655544 5899999999999999998764  5887764321       4678999999999998 89887     


Q ss_pred             ccccccccCCCCCHH
Q 023118          254 AACIGLKDVLDITPT  268 (287)
Q Consensus       254 a~~~~~idt~~~t~~  268 (287)
                             ||+++|++
T Consensus       146 -------~~~~~~~~  153 (154)
T cd00464         146 -------DTDELSPE  153 (154)
T ss_pred             -------ECCCCCCC
Confidence                   67777775

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.83  E-value=1.4e-19  Score=152.63  Aligned_cols=171  Identities=19%  Similarity=0.243  Sum_probs=121.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhhhhhHHHH-HHHhhcCCCeEEecC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFREYESKA-LQKLSLVPQQVVATG  172 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~fr~~e~~~-l~~l~~~~~~via~g  172 (287)
                      .|+|.||+||||||+++.||..+|++|+++|.++.++.  .|+++.++-+....+..-+.+.+- ..+++. ...+|..|
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-~~nvVleg   80 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-EGNVVLEG   80 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-cCCeEEhh
Confidence            68999999999999999999999999999999988765  699998874322222222223332 334455 45566555


Q ss_pred             CceEeccccHHhh-cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEec
Q 023118          173 GGAVVRPLNWRFM-RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSL  250 (287)
Q Consensus       173 gG~v~~~~~~~~L-~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~  250 (287)
                      ..+     .|-.. ...+.|||++|++++++|++.|++           ..+.+++.++.+.-......|.+ +.+  ++
T Consensus        81 rLA-----~Wi~k~~adlkI~L~Apl~vRa~Ria~REg-----------i~~~~a~~~~~~RE~se~kRY~~~YgI--Di  142 (179)
T COG1102          81 RLA-----GWIVREYADLKIWLKAPLEVRAERIAKREG-----------IDVDEALAETVEREESEKKRYKKIYGI--DI  142 (179)
T ss_pred             hhH-----HHHhccccceEEEEeCcHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHHHhCC--CC
Confidence            422     23111 136889999999999999998653           23334444444433344467777 555  55


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHHHhhhc
Q 023118          251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK  285 (287)
Q Consensus       251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~  285 (287)
                      +|++.++.+|||+.++|++|+..+..+++.....+
T Consensus       143 dDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~~  177 (179)
T COG1102         143 DDLSIYDLVINTSKWDPEEVFLILLDAIDALSIKE  177 (179)
T ss_pred             ccceeeEEEEecccCCHHHHHHHHHHHHHhhcccc
Confidence            78999999999999999999999999998876544

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.78  E-value=4.1e-18  Score=168.37  Aligned_cols=182  Identities=18%  Similarity=0.151  Sum_probs=131.4

Q ss_pred             eEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCCCchhhh--hh
Q 023118           71 FCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGGTSVAQI--FK  143 (287)
Q Consensus        71 l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G~~i~~~--~~  143 (287)
                      +...+|+..+++|+.+.. +   +..|+|.||+||||||+++.|+..+++.|+|+|.++...     ..|.+..+.  +.
T Consensus       265 ~A~~~g~~RLIDN~~~~~-~---~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~  340 (512)
T PRK13477        265 IAVRCGSTRLIDNVFLMK-R---QPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALA  340 (512)
T ss_pred             EEEEeCCeEEEeeeEecc-C---CcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHH
Confidence            445778899999999977 5   899999999999999999999999999999999886553     134443221  00


Q ss_pred             ---------h-----h----------------------------chhhhhhhHHHHHHHhhcCCCeEEecCC--ceEecc
Q 023118          144 ---------E-----S----------------------------GEAYFREYESKALQKLSLVPQQVVATGG--GAVVRP  179 (287)
Q Consensus       144 ---------~-----~----------------------------g~~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~  179 (287)
                               .     .                            ..+..|..-....++++... .+|..|.  |++..|
T Consensus       341 ~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~-~iV~eGRDigtvV~P  419 (512)
T PRK13477        341 ELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKG-GLVAEGRDIGTHVFP  419 (512)
T ss_pred             HHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcC-CEEEEcccceeEEcC
Confidence                     0     0                            11223333333444444433 4667776  666666


Q ss_pred             ccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEec
Q 023118          180 LNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSL  250 (287)
Q Consensus       180 ~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~  250 (287)
                      ..      .+.|||++|++.+++|..... ..||++..    .+    +.+.+++.+|+         |+|..+|..+  
T Consensus       420 ~A------dlKIfL~As~evRa~RR~~~l-~~Rpll~~----~~----e~i~~~i~eRd~~D~~R~i~PLy~a~dai~--  482 (512)
T PRK13477        420 DA------ELKIFLTASVEERARRRALDL-QAQGFPVI----DL----EQLEAQIAERDRLDSTREIAPLRKADDAIE--  482 (512)
T ss_pred             CC------CEEEEEECCHHHHHHHHHhhh-hhCCCccC----CH----HHHHHHHHHHHhhhcccccccccccCCeEE--
Confidence            54      489999999999999976532 35777531    12    66788899999         9998855444  


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                               |||+++++++|+++|++.+++.+.
T Consensus       483 ---------IDTs~lsieeVv~~Il~~i~~~~~  506 (512)
T PRK13477        483 ---------LITDGLSIEEVVDKIIDLYRDRIP  506 (512)
T ss_pred             ---------EECCCCCHHHHHHHHHHHHHHhCc
Confidence                     699999999999999999987543

>PRK09169 hypothetical protein; Validated

Probab=99.77  E-value=3.4e-18  Score=185.76  Aligned_cols=151  Identities=15%  Similarity=0.056  Sum_probs=130.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118           92 LDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT  171 (287)
Q Consensus        92 l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~  171 (287)
                      |.+..|+|+|++|+||||+++.|++.+++.|+|+|..|++.. |++|.++|..+|  .||+.|...++++.. ...|+++
T Consensus      2108 L~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~-GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLST 2183 (2316)
T PRK09169       2108 LGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI-GKKIARIQALRG--LSPEQAAARVRDALR-WEVVLPA 2183 (2316)
T ss_pred             HhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh-CCCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEeC
Confidence            447899999999999999999999999999999999999998 999999999999  999999999999886 6789999


Q ss_pred             CCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcc-hhhHHHHHHHHHHHHHHhhhhh-CCeEE
Q 023118          172 GGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSAD-SYTKAFTALSALSKERSEAYAN-ADATV  248 (287)
Q Consensus       172 ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~-~~~~~~~~l~~l~~~R~~~Y~~-ad~~v  248 (287)
                      |||++..+.++..|. +|++|||..+++.+.+|+...  .+||++...+.+ +..-.-.+..+++++|.++|++ +|+.|
T Consensus      2184 GGGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g--~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvADl~V 2261 (2316)
T PRK09169       2184 EGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYAG--LNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQDLEV 2261 (2316)
T ss_pred             CCCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhccC--CCCccccCCCCccchhccHHHHHHHHHHhHHHHHHhcCccc
Confidence            999999999999997 599999999999999999753  569998754321 0000113456688899999987 89887

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.76  E-value=1e-17  Score=147.57  Aligned_cols=169  Identities=27%  Similarity=0.321  Sum_probs=106.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhh-------------hh------hhchhh-
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQI-------------FK------ESGEAY-  149 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~-------------~~------~~g~~~-  149 (287)
                      -.|+|.||+||||||+++.||..|++.|+|+|.++....     .|.++.+.             |.      ..|++. 
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs   84 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS   84 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhh
Confidence            579999999999999999999999999999998854421     34433331             11      122232 


Q ss_pred             --hhhhHH------------------HHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhc
Q 023118          150 --FREYES------------------KALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       150 --fr~~e~------------------~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                        .|..+.                  +..++++.....+|..|.  |+|..|..      .+.|||++++|++++|=.. 
T Consensus        85 ~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV~PdA------~lKiFLtAS~e~RA~RR~~-  157 (222)
T COG0283          85 EEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVVFPDA------ELKIFLTASPEERAERRYK-  157 (222)
T ss_pred             hhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceECCCC------CeEEEEeCCHHHHHHHHHH-
Confidence              232222                  123333443344666665  66666665      3889999999999999322 


Q ss_pred             CCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          208 GTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       208 ~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                           .+......+.    +++|.+-+.+|+..-.. +...+   -.|.+..+|||++||.+||+++|++.+++.+
T Consensus       158 -----q~~~~g~~~~----~e~ll~eI~~RD~~D~~R~~~PL---k~A~DA~~iDTs~msieeVv~~il~~~~~~~  221 (222)
T COG0283         158 -----QLQAKGFSEV----FEELLAEIKERDERDSNRAVAPL---KPAEDALLLDTSSLSIEEVVEKILELIRQKL  221 (222)
T ss_pred             -----HHHhccCcch----HHHHHHHHHHhhhccccCcCCCC---cCCCCeEEEECCCCcHHHHHHHHHHHHHHhh
Confidence                 2222211111    36677777888843332 11111   0133333499999999999999999998543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.74  E-value=4.1e-18  Score=147.72  Aligned_cols=161  Identities=17%  Similarity=0.201  Sum_probs=108.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHH--------------
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQ--------------  159 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~--------------  159 (287)
                      |++++|+||||||||||+++|++.+++.|++.+..+.... .....+.+...+++.+|..+...+.              
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~   80 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPA-SAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI   80 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCcc-chhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence            7899999999999999999999999999988887764332 3334455555666666655443322              


Q ss_pred             ---HhhcCCCeEEecCCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118          160 ---KLSLVPQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK  235 (287)
Q Consensus       160 ---~l~~~~~~via~ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~  235 (287)
                         ........|++.|++.+. ....+.+. .+.+|||++|++.+.+|+..++   +|..            +.+.+.+ 
T Consensus        81 ~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~---~~~~------------~~i~~rl-  143 (186)
T PRK10078         81 EIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRG---RENA------------SEINARL-  143 (186)
T ss_pred             HHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC---CCCH------------HHHHHHH-
Confidence               111223457776665443 23334443 3678999999999999998653   3211            2244444 


Q ss_pred             HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      .|.+.|..+|..+           || ++.++++++++|.+.+..-.+.
T Consensus       144 ~r~~~~~~ad~~v-----------i~-~~~s~ee~~~~i~~~l~~~~~~  180 (186)
T PRK10078        144 ARAARYQPQDCHT-----------LN-NDGSLRQSVDTLLTLLHLSQKE  180 (186)
T ss_pred             HHhhhhccCCEEE-----------Ee-CCCCHHHHHHHHHHHHhhcCcc
Confidence            4667787777554           46 3469999999999988765443

>PRK04182 cytidylate kinase; Provisional

Probab=99.72  E-value=1e-16  Score=136.52  Aligned_cols=160  Identities=22%  Similarity=0.313  Sum_probs=103.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhh---hhhHHHHHHHhhcCCCeEEe
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYF---REYESKALQKLSLVPQQVVA  170 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~f---r~~e~~~l~~l~~~~~~via  170 (287)
                      +|+|+|++||||||+++.||..++++|+|+|+++....  .|.++.+++. .++..+   +..+. .+..++.....+|.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~Vi   79 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK-YAEEDPEIDKEIDR-RQLEIAEKEDNVVL   79 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH-HhhcCchHHHHHHH-HHHHHHhcCCCEEE
Confidence            68999999999999999999999999999887654432  3777777643 333332   22222 23334412223333


Q ss_pred             cCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh-------
Q 023118          171 TGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY-------  241 (287)
Q Consensus       171 ~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y-------  241 (287)
                      .|.  +.+..+      ..+++|||++|++.+.+|+..+.  .+|...         +...+.+....|...|       
T Consensus        80 ~g~~~~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r~--~~~~~~---------a~~~~~~~d~~~~~~~~~~~~~~  142 (180)
T PRK04182         80 EGRLAGWMAKD------YADLKIWLKAPLEVRAERIAERE--GISVEE---------ALEETIEREESEAKRYKEYYGID  142 (180)
T ss_pred             EEeecceEecC------CCCEEEEEECCHHHHHHHHHhcc--CCCHHH---------HHHHHHHHHHHHHHHHHHHhCCC
Confidence            442  222211      03689999999999999998764  244321         2233333333343333       


Q ss_pred             ----hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhhcC
Q 023118          242 ----ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR  286 (287)
Q Consensus       242 ----~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~~  286 (287)
                          ..||++            |||+.++++++++.|++.+..+.++.+
T Consensus       143 ~~~~~~~d~~------------idt~~~~~~~~~~~I~~~~~~~~~~~~  179 (180)
T PRK04182        143 IDDLSIYDLV------------INTSRWDPEGVFDIILTAIDKLLKAKD  179 (180)
T ss_pred             ccccccccEE------------EECCCCCHHHHHHHHHHHHHHHhcccC
Confidence                345544            589999999999999999998776543

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.69  E-value=1.9e-16  Score=131.85  Aligned_cols=150  Identities=21%  Similarity=0.323  Sum_probs=104.4

Q ss_pred             EcCCCCCHHHHHHHHHhccCCccccchhH-----HHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118          100 VGMMGSGKTTVGEILSDALDYTFADSDKY-----VEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus       100 vG~~GsGKSTl~k~La~~l~~~fid~d~~-----ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      +|.+||||||++..||..+++.|+|+|++     |++|..|.++++--   .+++..................|++|+. 
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdD---R~pWL~~l~~~~~~~~~~~~~~vi~CSA-   76 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDD---RWPWLEALGDAAASLAQKNKHVVIACSA-   76 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcch---hhHHHHHHHHHHHHhhcCCCceEEecHH-
Confidence            69999999999999999999999999998     88898999998752   2333222222222222222235777775 


Q ss_pred             eEeccccHHhhcC---C-cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEec
Q 023118          175 AVVRPLNWRFMRQ---G-ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL  250 (287)
Q Consensus       175 ~v~~~~~~~~L~~---g-~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~  250 (287)
                        +....+..|+.   + .+|||+.+++.+.+|+.+|.+|++|.-.-      .   .+|..|   ..|--.. |++.  
T Consensus        77 --LKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll------~---SQfa~L---E~P~~de-~vi~--  139 (161)
T COG3265          77 --LKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLL------D---SQFATL---EEPGADE-DVLT--  139 (161)
T ss_pred             --HHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHH------H---HHHHHh---cCCCCCC-CEEE--
Confidence              34566778875   2 47999999999999999999999884321      1   223332   2233222 4433  


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          251 LNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                               ||.+. ++++++++++..+..
T Consensus       140 ---------idi~~-~~e~vv~~~~~~l~~  159 (161)
T COG3265         140 ---------IDIDQ-PPEEVVAQALAWLKE  159 (161)
T ss_pred             ---------eeCCC-CHHHHHHHHHHHHhc
Confidence                     67764 899999999998865

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=2.2e-16  Score=132.47  Aligned_cols=157  Identities=18%  Similarity=0.297  Sum_probs=115.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhH-----HHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEE
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY-----VEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVV  169 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~-----ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi  169 (287)
                      ..|+++|++||||||++++|+..|++.|+|+|++     +++|..|.++.+-   +.+++......+..++++.....|+
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~---DR~pWL~~i~~~~~~~l~~~q~vVl   89 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDD---DRWPWLKKIAVELRKALASGQGVVL   89 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcc---cccHHHHHHHHHHHHHhhcCCeEEE
Confidence            4799999999999999999999999999999998     8888889998765   4566666666677777777677788


Q ss_pred             ecCCceEeccccHHhhcC----C----------cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118          170 ATGGGAVVRPLNWRFMRQ----G----------ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK  235 (287)
Q Consensus       170 a~ggG~v~~~~~~~~L~~----g----------~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~  235 (287)
                      +|+.   +....+.+|+.    |          .+|||.++.|++.+|+..|.+|++|.-.      .+   .+|..|  
T Consensus        90 ACSa---LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~l------le---SQf~~L--  155 (191)
T KOG3354|consen   90 ACSA---LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADL------LE---SQFATL--  155 (191)
T ss_pred             EhHH---HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHH------HH---HHHHhc--
Confidence            8875   23344555542    1          4799999999999999999999988532      11   122222  


Q ss_pred             HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                       .-|--.+.|++-           ||+...+++++++.|.+.+..
T Consensus       156 -E~p~~~e~div~-----------isv~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  156 -EAPDADEEDIVT-----------ISVKTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             -cCCCCCccceEE-----------EeeccCCHHHHHHHHHHHHHh
Confidence             123222333332           566668999999999987754

>PRK03839 putative kinase; Provisional

Probab=99.67  E-value=9.1e-16  Score=131.94  Aligned_cols=153  Identities=19%  Similarity=0.230  Sum_probs=101.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      .|+|+|+|||||||+++.||..++++|+|.|+++.+.    .+.+.+...++..|+..+..+.+...  ...++.+|.  
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~vIidG~--   73 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK----GIGEEKDDEMEIDFDKLAYFIEEEFK--EKNVVLDGH--   73 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc----CCcccCChhhhcCHHHHHHHHHHhcc--CCCEEEEec--
Confidence            5899999999999999999999999999999998543    34455555677778887777665432  222455542  


Q ss_pred             EeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccc
Q 023118          176 VVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLA  254 (287)
Q Consensus       176 v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a  254 (287)
                           ....+..+++|||+++++.+.+|+..++. .+|....    .   ...++.+++.  ...|.. ..+.+      
T Consensus        74 -----~~~l~~~~~vi~L~~~~~~~~~Rl~~R~~-~~~~~~~----~---~~~~~~~~~~--~~~~~~r~~~~~------  132 (180)
T PRK03839         74 -----LSHLLPVDYVIVLRAHPKIIKERLKERGY-SKKKILE----N---VEAELVDVCL--CEALEEKEKVIE------  132 (180)
T ss_pred             -----cccccCCCEEEEEECCHHHHHHHHHHcCC-CHHHHHH----H---HHHHHHHHHH--HHHHHhcCCEEE------
Confidence                 11223348899999999999999987642 2222110    0   0112222111  122322 22222      


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          255 ACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       255 ~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                           ||+++.++++++.+|++.++...
T Consensus       133 -----Id~~~~s~eev~~~I~~~l~~~~  155 (180)
T PRK03839        133 -----VDTTGKTPEEVVEEILELIKSGK  155 (180)
T ss_pred             -----EECCCCCHHHHHHHHHHHHhcCC
Confidence                 68988899999999999987653

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.64  E-value=2.8e-16  Score=157.77  Aligned_cols=151  Identities=21%  Similarity=0.344  Sum_probs=112.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCC------ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHH-HHHhhcCC
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDY------TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA-LQKLSLVP  165 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~------~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~-l~~l~~~~  165 (287)
                      .|..|+|+|+|||||||+++.|+..++.      .|+|+|.+...+.            |+..|+..+.+. .+.++...
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~------------ge~~f~~~er~~~~~~l~~~a  458 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS------------SELGFSKEDRDLNILRIGFVA  458 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc------------CCCCCCHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999996      8999997753222            233455544442 22233333


Q ss_pred             CeEEecCCceEecc---------ccHHhhcC-C--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHH
Q 023118          166 QQVVATGGGAVVRP---------LNWRFMRQ-G--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSAL  233 (287)
Q Consensus       166 ~~via~ggG~v~~~---------~~~~~L~~-g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l  233 (287)
                      ..++.+|+++++++         .+++.+++ |  ++|||++|++.+.+|+      .+|++....       .+.+.++
T Consensus       459 ~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~------rr~Ll~~~~-------~~~i~~l  525 (568)
T PRK05537        459 SEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRD------RKGLYAKAR-------EGKIKGF  525 (568)
T ss_pred             HHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhc------cccccccch-------hchhhcc
Confidence            45677888888773         56777765 5  5799999999999995      256664321       1457888


Q ss_pred             HHHHHhhhh-h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          234 SKERSEAYA-N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       234 ~~~R~~~Y~-~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      +..|++.|. . ||++|            ||++.++++++++|+..++.
T Consensus       526 ~~~R~~yy~p~~Adl~I------------Dt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        526 TGISDPYEPPANPELVI------------DTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             ccccccccCCCCCcEEE------------ECCCCCHHHHHHHHHHHHHH
Confidence            899999996 3 78765            88999999999999998874

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.61  E-value=5.7e-16  Score=132.74  Aligned_cols=154  Identities=19%  Similarity=0.198  Sum_probs=102.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHH-----HHHHhhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK-----ALQKLSL  163 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~-----~l~~l~~  163 (287)
                      |..|+|+|++||||||+++.|++.+.     ..|+|+|.+-+ .+         ...|.+.+...+..     +.+.+..
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~-~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~   76 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE-IL---------GHYGYDKQSRIEMALKRAKLAKFLAD   76 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh-hc---------CCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999999886     55677766542 12         11222222222221     1222333


Q ss_pred             CCCeEEecCCceE--eccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh
Q 023118          164 VPQQVVATGGGAV--VRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY  241 (287)
Q Consensus       164 ~~~~via~ggG~v--~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y  241 (287)
                      ....||++|++.+  ....++..+...++|||++|++++.+|+.      +|++...       ..+++.+++..|.|.|
T Consensus        77 ~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~------~~l~~~~-------~~~~~~~~~~~~~~~~  143 (176)
T PRK05541         77 QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ------KGLYTKA-------LKGEIKNVVGVDIPFD  143 (176)
T ss_pred             CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch------hhHHHHH-------HcCcccccccCCCccc
Confidence            4457888877654  23334444444678999999999999963      3433210       0135677888999999


Q ss_pred             hh-CCeEEeccccccccccccCCC-CCHHHHHHHHHHHHHHHh
Q 023118          242 AN-ADATVSLLNLAACIGLKDVLD-ITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       242 ~~-ad~~v~~~~~a~~~~~idt~~-~t~~eva~~i~~~i~~~l  282 (287)
                      +. ||++|            |+++ .++++++++|+..++..+
T Consensus       144 ~~~Ad~vI------------~~~~~~~~~~~v~~i~~~l~~~~  174 (176)
T PRK05541        144 EPKADLVI------------DNSCRTSLDEKVDLILNKLKLRL  174 (176)
T ss_pred             CCCCCEEE------------eCCCCCCHHHHHHHHHHHHHHhc
Confidence            77 77775            6766 599999999999887654

>PRK13975 thymidylate kinase; Provisional

Probab=99.61  E-value=3.5e-15  Score=129.42  Aligned_cols=164  Identities=16%  Similarity=0.278  Sum_probs=102.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhHH----HHHhC-----CCchhhhhhhhchhhhhhhHHHHHHHhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKYV----EKLMG-----GTSVAQIFKESGEAYFREYESKALQKLS  162 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~i----e~~~~-----G~~i~~~~~~~g~~~fr~~e~~~l~~l~  162 (287)
                      |..|+|.|++||||||+++.|+..++  +.|.++|..+    .+...     +.++..+|...+...|+..+....+   
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~---   78 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK---   78 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence            57899999999999999999999998  4555665443    33222     2233445666666666654432221   


Q ss_pred             cCCCeEEe-----------cCCceEec---cccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHH
Q 023118          163 LVPQQVVA-----------TGGGAVVR---PLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFT  228 (287)
Q Consensus       163 ~~~~~via-----------~ggG~v~~---~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~  228 (287)
                         ..|+.           +++|....   ..+...+..+++|||++|++.+.+|+..++   +|....   ..|   ++
T Consensus        79 ---~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~---~~~~~~---~~~---~~  146 (196)
T PRK13975         79 ---RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD---KEIFEK---KEF---LK  146 (196)
T ss_pred             ---CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC---ccccch---HHH---HH
Confidence               23333           23332211   011111234789999999999999998763   554431   122   34


Q ss_pred             HHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          229 ALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       229 ~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      ++.+.|.++..   .|......+           ||+++.++++++++|.+.+...+.
T Consensus       147 ~~~~~y~~~~~~~~~~~~~~~~~-----------Id~~~~~~eev~~~I~~~i~~~~~  193 (196)
T PRK13975        147 KVQEKYLELANNEKFMPKYGFIV-----------IDTTNKSIEEVFNEILNKIKDKIP  193 (196)
T ss_pred             HHHHHHHHHHhhcccCCcCCEEE-----------EECCCCCHHHHHHHHHHHHHHhCC
Confidence            55666666554   222222332           689889999999999999987654

>PRK14532 adenylate kinase; Provisional

Probab=99.60  E-value=3.1e-14  Score=123.10  Aligned_cols=162  Identities=19%  Similarity=0.219  Sum_probs=108.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVA  170 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via  170 (287)
                      .|+|+||+||||||+++.||..+++.++++|+++++.. .    |..+.+++. .|...+...-..++.+...    .+.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~----~~~   76 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLP----EAE   76 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHh----CcC
Confidence            58999999999999999999999999999999988753 1    334455544 5666655444444443332    234


Q ss_pred             cCCceEecc--cc------H-Hhhc-CC----cEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118          171 TGGGAVVRP--LN------W-RFMR-QG----ITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALSALSK  235 (287)
Q Consensus       171 ~ggG~v~~~--~~------~-~~L~-~g----~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~~l~~  235 (287)
                      +|+|.|++.  .+      + +.+. .|    .+|||++|++++.+|+..|.. ..||...   .+.   ...++.+.++
T Consensus        77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~---~~~---~~~Rl~~~~~  150 (188)
T PRK14532         77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDN---PEV---FVTRLDAYNA  150 (188)
T ss_pred             ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCC---HHH---HHHHHHHHHH
Confidence            677777763  21      1 1232 23    689999999999999987632 2344221   122   2456777777


Q ss_pred             HHH---hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          236 ERS---EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       236 ~R~---~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      .+.   +.|+..+..+.          ||.+ .++++|.++|...+.
T Consensus       151 ~~~~i~~~y~~~~~~~~----------id~~-~~~eev~~~I~~~l~  186 (188)
T PRK14532        151 QTAPLLPYYAGQGKLTE----------VDGM-GSIEAVAASIDAALE  186 (188)
T ss_pred             HHHHHHHHHHhcCCEEE----------EECC-CCHHHHHHHHHHHHh
Confidence            775   56776554443          4544 599999999998875

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.58  E-value=2.7e-14  Score=120.60  Aligned_cols=152  Identities=15%  Similarity=0.237  Sum_probs=98.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCCccccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118           97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT  171 (287)
Q Consensus        97 i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~  171 (287)
                      |+|+||+||||||+++.|++.++..|+|+|.+.     +.+..|....+   ...+.+++.........+......|+++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~Vi~~   77 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLND---DDRWPWLQNLNDASTAAAAKNKVGIITC   77 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCCh---hhHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            579999999999999999999999999999973     22333443322   2344555555544444444444457777


Q ss_pred             CCceEeccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH-HHHhhhhhCCe
Q 023118          172 GGGAVVRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK-ERSEAYANADA  246 (287)
Q Consensus       172 ggG~v~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~-~R~~~Y~~ad~  246 (287)
                      +.   .++..+..++. +   .+|||++|++.+.+|+..|+.+..|      .       +.+...+. .+.|.+..++.
T Consensus        78 t~---~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~------~-------~~i~~~~~~~~~~~~~e~~~  141 (163)
T TIGR01313        78 SA---LKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMK------A-------DMLESQFAALEEPLADETDV  141 (163)
T ss_pred             cc---cHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCC------H-------HHHHHHHHHhCCCCCCCCce
Confidence            52   34555555543 2   5699999999999999876422111      0       22333333 23444555555


Q ss_pred             EEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          247 TVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       247 ~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      .+           ||++. ++++++++|.+.+-
T Consensus       142 ~~-----------id~~~-~~~~~~~~~~~~~~  162 (163)
T TIGR01313       142 LR-----------VDIDQ-PLEGVEEDCIAVVL  162 (163)
T ss_pred             EE-----------EECCC-CHHHHHHHHHHHHh
Confidence            54           78886 79999999988763

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.58  E-value=2e-15  Score=137.40  Aligned_cols=93  Identities=26%  Similarity=0.309  Sum_probs=77.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKE  144 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~  144 (287)
                      +++++|+++.|+++.+++|+||++++   |++++|+||||||||||+|.|++.+.|   +.|.+.   .+|.++.++   
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~---G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~---l~g~~i~~~---   69 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPK---GEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVL---LDGKDIASL---   69 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecC---CcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEE---ECCCchhhc---
Confidence            58999999999999999999999999   999999999999999999999999999   566665   467777655   


Q ss_pred             hchhhhhhhHHHHHHHhhcCCCeEEecCCceEe
Q 023118          145 SGEAYFREYESKALQKLSLVPQQVVATGGGAVV  177 (287)
Q Consensus       145 ~g~~~fr~~e~~~l~~l~~~~~~via~ggG~v~  177 (287)
                              ...+..+.++..+|.-....+-+|.
T Consensus        70 --------~~kelAk~ia~vpQ~~~~~~~~tV~   94 (258)
T COG1120          70 --------SPKELAKKLAYVPQSPSAPFGLTVY   94 (258)
T ss_pred             --------CHHHHhhhEEEeccCCCCCCCcEEe
Confidence                    4566778888877765455555554

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.57  E-value=1.6e-13  Score=115.95  Aligned_cols=162  Identities=20%  Similarity=0.280  Sum_probs=100.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhc-hhhhhhhHHHHHHHhh-cCCCeEEec
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESG-EAYFREYESKALQKLS-LVPQQVVAT  171 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g-~~~fr~~e~~~l~~l~-~~~~~via~  171 (287)
                      +|+|.|++||||||+++.|+..+++++++.|.++....  .|.++..+..... .+.....-...+.+++ .... +|..
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Vi~   80 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKN-VVLE   80 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCC-EEEE
Confidence            68999999999999999999999999999988765543  2555544321111 0111111112233333 3233 3334


Q ss_pred             CCceEeccccHHhhc--CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEE
Q 023118          172 GGGAVVRPLNWRFMR--QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATV  248 (287)
Q Consensus       172 ggG~v~~~~~~~~L~--~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v  248 (287)
                      |.+.     .+ .+.  ..++|||++|++.+.+|+..+++  .         +..++..++.+....|...|.. ...  
T Consensus        81 g~~~-----~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~--~---------s~~~a~~~~~~~d~~~~~~~~~~~~~--  141 (171)
T TIGR02173        81 SRLA-----GW-IVREYADVKIWLKAPLEVRARRIAKREG--K---------SLTVARSETIEREESEKRRYLKFYGI--  141 (171)
T ss_pred             eccc-----ce-eecCCcCEEEEEECCHHHHHHHHHHccC--C---------CHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence            4321     11 111  24789999999999999987542  1         1223445566665666666654 222  


Q ss_pred             eccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          249 SLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       249 ~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      +..|...++.+|||+.+++++ ++.|..++
T Consensus       142 ~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       142 DIDDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             CccccccccEEEECCCCCHHH-HHHHHHHh
Confidence            123444556678999999999 99998875

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.56  E-value=3.3e-14  Score=145.45  Aligned_cols=166  Identities=23%  Similarity=0.206  Sum_probs=109.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhh--hhh----------------h-----
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQI--FKE----------------S-----  145 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~--~~~----------------~-----  145 (287)
                      ...|+|.||+||||||+++.||..++++|+|+|.++....     .|.++.+.  +..                +     
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT  521 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence            4589999999999999999999999999999999865541     45554331  000                0     


Q ss_pred             ----------------chhhhhhhHHHHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhc
Q 023118          146 ----------------GEAYFREYESKALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       146 ----------------g~~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                                      ..+..|+.-....++++.. ..+|..|.  |+|..|.+      .+.|||+++++++++|-...
T Consensus       522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~-~~~v~eGRdigtvv~p~a------~~kifl~a~~~~Ra~Rr~~~  594 (661)
T PRK11860        522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRL-PGLVADGRDMGTVIFPDA------ALKVFLTASAEARAERRYKQ  594 (661)
T ss_pred             hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhC-CCEEEECCCCccEECCCC------CeEEEEECChhHHHHHHHHH
Confidence                            1223344434445555543 34777775  77777764      48999999999999996531


Q ss_pred             CCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh---CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          208 GTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN---ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       208 ~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~---ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                            +........|    +++.+.+.+|+..-.+   +.+.     .+.+..+|||++++++||+++|++.+++.
T Consensus       595 ------~~~~~~~~~~----~~~~~~~~~Rd~~d~~R~~~pl~-----~~~da~~idts~~~~~~v~~~i~~~i~~~  656 (661)
T PRK11860        595 ------LISKGISANI----ADLLADLEARDARDTQRSVAPLK-----PAQDALLLDNSDLTIEQAVAQVLDWWQER  656 (661)
T ss_pred             ------HHhCCCCCCH----HHHHHHHHHHhHHhhcCCCCCCc-----cCCCEEEEECCCCCHHHHHHHHHHHHHhh
Confidence                  1111111234    4455556677743332   2222     23445569999999999999999999764

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.54  E-value=1.7e-14  Score=126.31  Aligned_cols=157  Identities=20%  Similarity=0.248  Sum_probs=95.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      |..|+|+|++||||||+++.|++.+     +..++|+|.+......+..   +..+.....++.. .++...+......|
T Consensus        24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~---~~~~~~~~~~~~l-~~~a~~~~~~G~~V   99 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLG---FSDADRKENIRRV-GEVAKLMVDAGLVV   99 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCC---cCcccHHHHHHHH-HHHHHHHhhCCCEE
Confidence            8999999999999999999999987     3467888877533221111   1011111222221 11233333333344


Q ss_pred             EecCCce--EeccccHHhhcC-Cc-EEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh--
Q 023118          169 VATGGGA--VVRPLNWRFMRQ-GI-TVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA--  242 (287)
Q Consensus       169 ia~ggG~--v~~~~~~~~L~~-g~-~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~--  242 (287)
                      +++....  -.+...+.++.+ ++ +|||++|++.+.+|      ..||++.....       +.+..++..|.| |+  
T Consensus       100 I~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R------~~r~l~~~~~~-------~~~~~l~~~r~~-Y~~p  165 (198)
T PRK03846        100 LTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR------DPKGLYKKARA-------GEIRNFTGIDSV-YEAP  165 (198)
T ss_pred             EEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc------CchhHHHHhhc-------CCccCccccccc-CCCC
Confidence            4322110  011123334444 55 79999999999999      12777653211       224456677888 88  


Q ss_pred             h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          243 N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       243 ~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      . ||++|            ||++.++++++++|++.+..
T Consensus       166 ~~ad~~I------------dt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        166 ESPEIHL------------DTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             CCCCEEE------------ECCCCCHHHHHHHHHHHHHH
Confidence            5 67765            88899999999999998864

>PRK14530 adenylate kinase; Provisional

Probab=99.53  E-value=4.2e-13  Score=118.86  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=75.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchh---------hhhhhHHHHHHHhh-
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEA---------YFREYESKALQKLS-  162 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~---------~fr~~e~~~l~~l~-  162 (287)
                      .|..|+|+||+||||||+++.||..+++.|+++|+++.+.. +.++.++....|..         ........++++.. 
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~-~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANK-QMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhc-cCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999999998776 55555543332321         11123334444432 


Q ss_pred             cCCCeEEecCCceEeccccHHhhc----CCcEEEEecCHHHHHHHHhhcC
Q 023118          163 LVPQQVVATGGGAVVRPLNWRFMR----QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       163 ~~~~~via~ggG~v~~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      .....|+. |  .+.+....+.|.    .+.+|||++|.+.+.+|+..+.
T Consensus        81 ~~~~~Ild-G--~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~  127 (215)
T PRK14530         81 DADGFVLD-G--YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR  127 (215)
T ss_pred             cCCCEEEc-C--CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence            23333443 3  333333334432    3789999999999999998763

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.52  E-value=1.6e-13  Score=117.56  Aligned_cols=156  Identities=22%  Similarity=0.221  Sum_probs=89.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCc----cccchhHHHHHhCC-----Cchhhhhhhhchhhh----------hhhH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYT----FADSDKYVEKLMGG-----TSVAQIFKESGEAYF----------REYE  154 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~----fid~d~~ie~~~~G-----~~i~~~~~~~g~~~f----------r~~e  154 (287)
                      |+.++|+|||||||||+++.|+..++..    |+.+..--....+|     .+..+++...+...|          ...-
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP   80 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence            5689999999999999999999987542    21110000000011     111122111111101          0111


Q ss_pred             HHHHHHhhcCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118          155 SKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS  234 (287)
Q Consensus       155 ~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~  234 (287)
                       ..+.........|+++|++.+. +..++.+....+|||++|++.+.+|+..|+   +|..            +.+.+.+
T Consensus        81 -~~i~~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~---~~~~------------~~~~~rl  143 (179)
T TIGR02322        81 -AEIDQWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARG---RESR------------EEIEERL  143 (179)
T ss_pred             -HHHHHHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcC---CCCH------------HHHHHHH
Confidence             1223333345568888886543 334444456789999999999999998753   3321            2233444


Q ss_pred             HHHHhhhh--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          235 KERSEAYA--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       235 ~~R~~~Y~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                       .|.+.|.  .+|+.+           ++++ .++++++.+|.+.+.
T Consensus       144 -~~~~~~~~~~~~~~v-----------i~~~-~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       144 -ARSARFAAAPADVTT-----------IDNS-GSLEVAGETLLRLLR  177 (179)
T ss_pred             -HHHhhcccccCCEEE-----------EeCC-CCHHHHHHHHHHHHc
Confidence             4667775  367664           3454 589999999988775

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00017 cmk cytidylate kinase

Probab=99.50  E-value=7.6e-13  Score=118.10  Aligned_cols=163  Identities=23%  Similarity=0.296  Sum_probs=94.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCCCchhh------hhhhh----------------ch
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGGTSVAQ------IFKES----------------GE  147 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G~~i~~------~~~~~----------------g~  147 (287)
                      ..|+|+||+||||||+++.|++.+++.|+|+|.++...     ..|.++.+      .....                |+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGE   82 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCc
Confidence            37999999999999999999999999999999885332     12332211      00000                11


Q ss_pred             ---------------------hhhhhhHHHHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHH
Q 023118          148 ---------------------AYFREYESKALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRI  204 (287)
Q Consensus       148 ---------------------~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri  204 (287)
                                           +..|..-...+++++... .+|..|.  |.+..+.      ..+.|||++|++.+++|.
T Consensus        83 ~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~-~~Vi~Gr~~~~~v~~~------a~~~ifl~a~~~~Ra~Rr  155 (217)
T TIGR00017        83 DVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKND-GIIADGRDIGTVVFPN------AEVKIFLDASVEERAKRR  155 (217)
T ss_pred             chHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-CEEEEEcCcceEEeCC------CCEEEEEECCHHHHHHHH
Confidence                                 111212222333333322 3444443  2232222      258999999999999997


Q ss_pred             hhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHH
Q 023118          205 AAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQ  277 (287)
Q Consensus       205 ~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~  277 (287)
                      ..+..     ..+ ....|    +++.+.+.+|+..-.. +.   +--+.+.+..+|||++++++++++.|++.
T Consensus       156 ~~~~~-----~~g-~~~~~----e~~~~~i~~RD~~D~~R~~---~~~~~a~~~i~Idts~l~ieevv~~I~~~  216 (217)
T TIGR00017       156 YKQLQ-----IKG-NEVNF----EELLAEIKERDDRDSNREV---APLKKADDALYLDTSNLSIDEVVEKILEY  216 (217)
T ss_pred             HHHHh-----ccC-CCCCH----HHHHHHHHHHHhccccccc---CcccCCCCeEEEECCCCCHHHHHHHHHHh
Confidence            65321     110 01233    4556667777532211 10   01122333445899999999999999764

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.50  E-value=3.3e-14  Score=121.68  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=98.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      |+.|+|+|++||||||+++.|++.+.     ..|+|+|.+...+..+.....   ......++... .+.+.+.. .+.+
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~---~~r~~~~~~~~-~~a~~~~~-~g~~   78 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSK---EDRDTNIRRIG-FVANLLTR-HGVI   78 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCCh---hhHHHHHHHHH-HHHHHHHh-CCCE
Confidence            89999999999999999999999883     567899887644432322111   11122233221 12222222 3334


Q ss_pred             EecCCceEeccccHHhhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh-h
Q 023118          169 VATGGGAVVRPLNWRFMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA-N  243 (287)
Q Consensus       169 ia~ggG~v~~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~-~  243 (287)
                      +.+++..+ ....+..++    +..+|||++|++.+.+|.      .+|++....       .+.+..++..|.++|. .
T Consensus        79 vi~~~~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~------~~~l~~~~~-------~~~i~~~~~~~~~~~~p~  144 (175)
T PRK00889         79 VLVSAISP-YRETREEVRANIGNFLEVFVDAPLEVCEQRD------VKGLYAKAR-------AGEIKHFTGIDDPYEPPL  144 (175)
T ss_pred             EEEecCCC-CHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC------cccHHHHHH-------cCCCCCCcccCCCCCCCC
Confidence            44444322 233444443    256899999999999993      355543110       0224456678999997 3


Q ss_pred             -CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          244 -ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       244 -ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                       +|+++            |+++.++++++++|++.+..
T Consensus       145 ~ad~~i------------~~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        145 NPEVEC------------RTDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             CCcEEE------------ECCCCCHHHHHHHHHHHHHH
Confidence             77765            67788999999999999863

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.50  E-value=3.5e-13  Score=139.05  Aligned_cols=166  Identities=16%  Similarity=0.164  Sum_probs=107.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhh--------------h------------
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIF--------------K------------  143 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~--------------~------------  143 (287)
                      ..|+|.||+||||||+++.||+.+++.|+|+|.++....     .|.++.+..              .            
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS   81 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence            379999999999999999999999999999998864421     233322210              0            


Q ss_pred             ----hh---------------------chhhhhhhHHHHHHHhhcCCC---------eEEecCC--ceEeccccHHhhcC
Q 023118          144 ----ES---------------------GEAYFREYESKALQKLSLVPQ---------QVVATGG--GAVVRPLNWRFMRQ  187 (287)
Q Consensus       144 ----~~---------------------g~~~fr~~e~~~l~~l~~~~~---------~via~gg--G~v~~~~~~~~L~~  187 (287)
                          ..                     ..+..|+.-....++++....         .+|..|.  |+|..|.+      
T Consensus        82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigtvv~p~a------  155 (712)
T PRK09518         82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITTVVAPDA------  155 (712)
T ss_pred             cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccceEEecCC------
Confidence                00                     111233333334445442222         5777775  66766665      


Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDIT  266 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t  266 (287)
                      .+.|||+++++++++|...+..      .    ..|    +++.+.+.+|+..-.+ .+-    -..+++..+|||++++
T Consensus       156 ~~K~~l~A~~~~Ra~Rr~~~~~------~----~~~----~~~~~~~~~Rd~~d~R~~~p----l~~~~da~~idts~~~  217 (712)
T PRK09518        156 EVRILLTAREEVRQARRSGQDR------S----ETP----GVVLEDVAARDEADSKVTSF----LSAADGVTTLDNSDLD  217 (712)
T ss_pred             CeEEEEECCHHHHHHHHHHhhh------c----CCH----HHHHHHHHHHhhhcccccCC----CCCCCCeEEEECCCCC
Confidence            4899999999999999764321      1    334    3444455666643222 111    1235555669999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 023118          267 PTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       267 ~~eva~~i~~~i~~~l~~  284 (287)
                      ++||++.|+..+++.+..
T Consensus       218 ~~~v~~~i~~~i~~~~~~  235 (712)
T PRK09518        218 FDETLDLLIGLVEDAIEE  235 (712)
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            999999999999877653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.48  E-value=2e-14  Score=129.69  Aligned_cols=89  Identities=20%  Similarity=0.352  Sum_probs=76.2

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKE  144 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~  144 (287)
                      |++++||+|.|+++.+++++||+|++   |+.++|+|||||||||++|+|.+++.|   ++|.+.   ++|.++.++   
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~---gef~vliGpSGsGKTTtLkMINrLiep---t~G~I~---i~g~~i~~~---   68 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEE---GEFLVLIGPSGSGKTTTLKMINRLIEP---TSGEIL---IDGEDISDL---   68 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecC---CeEEEEECCCCCcHHHHHHHHhcccCC---CCceEE---ECCeecccC---
Confidence            58999999999999999999999999   999999999999999999999999999   677765   589888776   


Q ss_pred             hchhhhhhhHHHHHHHhhcCCC
Q 023118          145 SGEAYFREYESKALQKLSLVPQ  166 (287)
Q Consensus       145 ~g~~~fr~~e~~~l~~l~~~~~  166 (287)
                       ..-..|+.--.++++++..+.
T Consensus        69 -d~~~LRr~IGYviQqigLFPh   89 (309)
T COG1125          69 -DPVELRRKIGYVIQQIGLFPH   89 (309)
T ss_pred             -CHHHHHHhhhhhhhhcccCCC
Confidence             445566666677777776554

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.47  E-value=3.1e-14  Score=134.81  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      +.++++|+++.||+..+++|+|++|.+   |++++|+|||||||||++++|||...|   |+|.+.   ++|.++..
T Consensus         4 ~~l~i~~v~k~yg~~~av~~isl~i~~---Gef~~lLGPSGcGKTTlLR~IAGfe~p---~~G~I~---l~G~~i~~   71 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVDDISLDIKK---GEFVTLLGPSGCGKTTLLRMIAGFEQP---SSGEIL---LDGEDITD   71 (352)
T ss_pred             ceEEEEeeeeecCCeeEEecceeeecC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEECCC
Confidence            469999999999999999999999999   999999999999999999999999999   788774   45665544

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.47  E-value=3.5e-14  Score=133.76  Aligned_cols=68  Identities=21%  Similarity=0.340  Sum_probs=60.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ..++++|++|.||+..+++++|+++++   |++++|+|||||||||++++|||+..+   ++|.+.   ++|.++++
T Consensus         2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~---Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~---i~g~~vt~   69 (338)
T COG3839           2 AELELKNVRKSFGSFEVLKDVNLDIED---GEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEIL---IDGRDVTD   69 (338)
T ss_pred             cEEEEeeeEEEcCCceeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEECCC
Confidence            468999999999976699999999999   999999999999999999999999999   677764   46666555

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.46  E-value=5.2e-14  Score=126.66  Aligned_cols=66  Identities=21%  Similarity=0.301  Sum_probs=58.5

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      .+++++++++.|+...+|+|+||+|.+   |++++|+||||||||||+++|||++.|   ++|.+.   .+|..+
T Consensus         2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~---GEfvsilGpSGcGKSTLLriiAGL~~p---~~G~V~---~~g~~v   67 (248)
T COG1116           2 ALLEIEGVSKSFGGVEVLEDINLSVEK---GEFVAILGPSGCGKSTLLRLIAGLEKP---TSGEVL---LDGRPV   67 (248)
T ss_pred             ceEEEEeeEEEeCceEEeccceeEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCccc
Confidence            358999999999999999999999999   999999999999999999999999999   677653   345544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.46  E-value=5.4e-14  Score=124.24  Aligned_cols=65  Identities=28%  Similarity=0.380  Sum_probs=58.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +|+++|++|+||+.++|+++|+++.+   |+.++|+||||||||||+|.|.++..+   |+|.+.   ++|..+
T Consensus         2 mi~i~~l~K~fg~~~VLkgi~l~v~~---Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~---i~g~~~   66 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKGISLSVEK---GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSIT---VDGEDV   66 (240)
T ss_pred             eEEEEeeeEEeCCeEEecCcceeEcC---CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEE---ECCEec
Confidence            68999999999999999999999999   999999999999999999999999988   677665   456444

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.46  E-value=2.8e-12  Score=110.78  Aligned_cols=159  Identities=16%  Similarity=0.231  Sum_probs=95.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHHh-hcCCC
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQKL-SLVPQ  166 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l-~~~~~  166 (287)
                      .|+.++|+|+|||||||+++.|++.+++.++|+|.+.     .++..|....+.    ....+...-......+ .....
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   77 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDE----DRLPWLERLNDASYSLYKKNET   77 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcc----cchHHHHHHHHHHHHHHhcCCC
Confidence            4899999999999999999999999999999999852     222234433321    1111221212222222 11123


Q ss_pred             eEEecCCceEeccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118          167 QVVATGGGAVVRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA  242 (287)
Q Consensus       167 ~via~ggG~v~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~  242 (287)
                      .++.++.   .....++.+++ +   .+|||++|++.+.+|+..|..+..      ..       +-+...++..+|...
T Consensus        78 g~iv~s~---~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~------~~-------~vl~~Q~~~~e~~~~  141 (176)
T PRK09825         78 GFIVCSS---LKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFM------PP-------DLLQSQFDALERPCA  141 (176)
T ss_pred             EEEEEEe---cCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCC------CH-------HHHHHHHHHcCCCCC
Confidence            3333332   23334455543 2   579999999999999998764321      11       223333333333333


Q ss_pred             h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          243 N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       243 ~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      . .+...           +|++. +|+++++.+..+++.+..
T Consensus       142 ~e~~~~~-----------~d~~~-~~~~~~~~~~~~~~~~~~  171 (176)
T PRK09825        142 DEHDIAR-----------IDVNH-DIENVTEQCRQAVQAFRQ  171 (176)
T ss_pred             CcCCeEE-----------EECCC-CHHHHHHHHHHHHHHHHh
Confidence            2 34333           78886 789999999999987654

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.44  E-value=3.6e-12  Score=114.25  Aligned_cols=171  Identities=18%  Similarity=0.220  Sum_probs=95.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHH-----HhCCCchhhh--hhh--------------------hc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEK-----LMGGTSVAQI--FKE--------------------SG  146 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~-----~~~G~~i~~~--~~~--------------------~g  146 (287)
                      ..+|+|.|++||||||++++|++.++++|+|+|.++..     ...|.++.+.  ..+                    .|
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG   83 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence            46899999999999999999999999999999997443     2246655442  000                    00


Q ss_pred             ---------------------hhhhhhhHHHHHHHhhcCCCeEEecCCceEeccccHHhhcC-CcEEEEecCHHHHHHHH
Q 023118          147 ---------------------EAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRI  204 (287)
Q Consensus       147 ---------------------~~~fr~~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri  204 (287)
                                           .+..|+.-....+.++...+ +|..|..     ..+..++. .+.|||++|.+.+++|.
T Consensus        84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~-~Vi~GR~-----~~~~vl~~a~~~ifl~a~~e~R~~Rr  157 (225)
T PRK00023         84 EDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPG-LVMDGRD-----IGTVVFPDAELKIFLTASAEERAERR  157 (225)
T ss_pred             cchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCC-EEEEecC-----hheEEeCCCCEEEEEECCHHHHHHHH
Confidence                                 00111111112223333222 3333421     01112332 68999999999998885


Q ss_pred             hhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          205 AAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       205 ~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                      .... ..+     .....++++.+.+.+.-..|...|- .+..     .+.+..+|||+.++++++++.|.+.+++.+
T Consensus       158 ~~~~-~~~-----g~~~~~~~~~~~i~~rD~~~~~r~~-~~l~-----~~~d~l~IDTs~l~~ee~v~~I~~~i~~~~  223 (225)
T PRK00023        158 YKEL-QAK-----GISVDFEDLLAEIKERDERDSNRAV-APLK-----PAEDALLLDTSGLSIEEVVEKILALVEEKL  223 (225)
T ss_pred             HHHH-Hhc-----CCCCCHHHHHHHHHHHHHhhhhccc-cccc-----ccCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            4321 001     1123444444444333222222221 1111     011123589999999999999999998654

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.43  E-value=5.5e-12  Score=108.15  Aligned_cols=165  Identities=16%  Similarity=0.224  Sum_probs=95.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      ..+|+|+|++||||||+++.|+..++..++++|+++.+.. .+.+    +..++. .|...-...-.+.+.+....   .
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~---~   78 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIME-SGDLVPLDTVLDLLKDAMVA---A   78 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHc---c
Confidence            5689999999999999999999999999999999876653 2222    222221 12110000001111111100   1


Q ss_pred             EecCCceEecc--ccH---Hhhc-----CCcEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118          169 VATGGGAVVRP--LNW---RFMR-----QGITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKER  237 (287)
Q Consensus       169 ia~ggG~v~~~--~~~---~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~R  237 (287)
                      +..|.|.|++.  .++   ..+.     ...+|||++|++.+.+|+..|+.. .|+.   ...+.   ..+++...++++
T Consensus        79 ~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d---~~~~~---~~~r~~~~~~~~  152 (188)
T TIGR01360        79 LGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVD---DNEKT---IKKRLETYYKAT  152 (188)
T ss_pred             cCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCC---CCHHH---HHHHHHHHHHhh
Confidence            22233334332  222   1121     257899999999999999876521 2211   11122   235666666666


Q ss_pred             Hhh---hhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          238 SEA---YAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       238 ~~~---Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      .|.   |.. ..+.+           ||.+ .+++++..+|...++.
T Consensus       153 ~~~~~~y~~~~~~~~-----------id~~-~~~~~v~~~i~~~l~~  187 (188)
T TIGR01360       153 EPVIAYYETKGKLRK-----------INAE-GTVDDVFLQVCTAIDK  187 (188)
T ss_pred             HHHHHHHHhCCCEEE-----------EECC-CCHHHHHHHHHHHHhc
Confidence            654   543 33333           5765 6999999999998864

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.42  E-value=2.4e-12  Score=134.30  Aligned_cols=166  Identities=17%  Similarity=0.137  Sum_probs=103.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCc--------hhh---hh-------------h
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTS--------VAQ---IF-------------K  143 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~--------i~~---~~-------------~  143 (287)
                      .+-.|+|.||+||||||+++.||..+++.|+|+|.++....     .|.+        +.+   +.             .
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTS  112 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceE
Confidence            35689999999999999999999999999999999865542     3321        111   00             0


Q ss_pred             -----------------------------------hhc---hhhhhhhHHH------------------HHHHhhcCCCe
Q 023118          144 -----------------------------------ESG---EAYFREYESK------------------ALQKLSLVPQQ  167 (287)
Q Consensus       144 -----------------------------------~~g---~~~fr~~e~~------------------~l~~l~~~~~~  167 (287)
                                                         .+|   ....|..+..                  ..++++.. ..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~-~~  191 (863)
T PRK12269        113 YAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCG-AR  191 (863)
T ss_pred             ecccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CC
Confidence                                               000   1111222211                  22233322 34


Q ss_pred             EEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-C
Q 023118          168 VVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-A  244 (287)
Q Consensus       168 via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-a  244 (287)
                      +|..|.  |+|..|++.      +.|||+++++++++|=..      .+..   ...|    +++.+-+.+|+..-.. +
T Consensus       192 ~V~eGRDigTvVfPdA~------~KifL~As~e~RA~RR~~------e~~~---~~~~----~~i~~~i~~RD~~D~~R~  252 (863)
T PRK12269        192 VVCEGRDLTTVVFVDAD------LKCYLDASIEARVARRWA------QGTS---RLSK----QELEQRMRARDAHDRART  252 (863)
T ss_pred             EEEECCCCccEECCCCC------EEEEEECCHHHHHHHHHH------hhhc---cCCH----HHHHHHHHHhhhhhccCc
Confidence            666665  677777654      889999999999999332      2221   1234    5566666778744432 1


Q ss_pred             CeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          245 DATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       245 d~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      -.-+   ..|.+..+|||+++|++|+++.|+..++..
T Consensus       253 ~~pL---~~a~dAi~iDts~l~ieevv~~i~~~~~~~  286 (863)
T PRK12269        253 VGGL---RCAPDALYVDTSCLTIEEVCERIAREAHRR  286 (863)
T ss_pred             cCCC---ccCCCeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            1000   023344459999999999999999999753

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.41  E-value=1.7e-13  Score=122.59  Aligned_cols=77  Identities=23%  Similarity=0.280  Sum_probs=62.8

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      +++++|+++.|+.    ..+|+++||+|++   |+.++|+||||||||||+++|+++..|   ++|.++   +.|.++..
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~---Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~---i~g~d~~~   71 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEA---GEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVL---INGKDLTK   71 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCceEE---ECCEEcCc
Confidence            4679999999953    4799999999999   999999999999999999999999999   788755   46877665


Q ss_pred             hhhhhchhhhh
Q 023118          141 IFKESGEAYFR  151 (287)
Q Consensus       141 ~~~~~g~~~fr  151 (287)
                      + .......||
T Consensus        72 l-~~~~~~~~R   81 (226)
T COG1136          72 L-SEKELAKLR   81 (226)
T ss_pred             C-CHHHHHHHH
Confidence            5 233344454

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.39  E-value=4.4e-13  Score=120.11  Aligned_cols=70  Identities=23%  Similarity=0.371  Sum_probs=63.2

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .+.+++++|+++||++.+++++||+|.+   |++.+|+||||||||||+|.|.|++.|   +.|.+.   ..|.++.++
T Consensus         6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~---Gei~~iiGgSGsGKStlLr~I~Gll~P---~~GeI~---i~G~~i~~l   75 (263)
T COG1127           6 EPLIEVRGVTKSFGDRVILDGVDLDVPR---GEILAILGGSGSGKSTLLRLILGLLRP---DKGEIL---IDGEDIPQL   75 (263)
T ss_pred             cceEEEeeeeeecCCEEEecCceeeecC---CcEEEEECCCCcCHHHHHHHHhccCCC---CCCeEE---EcCcchhcc
Confidence            4679999999999999999999999999   999999999999999999999999999   677764   457776655

>PRK06762 hypothetical protein; Provisional

Probab=99.38  E-value=5.8e-12  Score=106.64  Aligned_cols=152  Identities=12%  Similarity=0.043  Sum_probs=93.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT  171 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~  171 (287)
                      ...|+|.|++||||||+++.|+..+  +..+++.|.+......+..-..   ....+.    -...++........|+..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~g~~vild   74 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPG---NLSIDL----IEQLVRYGLGHCEFVILE   74 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCC---CcCHHH----HHHHHHHHHhCCCEEEEc
Confidence            4689999999999999999999998  4556888887654432211000   001111    111222222223345444


Q ss_pred             CCceEeccc---cHHhhcC--C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023118          172 GGGAVVRPL---NWRFMRQ--G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN  243 (287)
Q Consensus       172 ggG~v~~~~---~~~~L~~--g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~  243 (287)
                      +.  .....   .+..+.+  +   ..|||++|++++.+|+..|.     ..+...       .+.+...|+.|+++|. 
T Consensus        75 ~~--~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~-----~~~~~~-------~~~l~~~~~~~~~~~~-  139 (166)
T PRK06762         75 GI--LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRP-----KSHEFG-------EDDMRRWWNPHDTLGV-  139 (166)
T ss_pred             hh--hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccc-----ccccCC-------HHHHHHHHhhcCCcCC-
Confidence            32  11111   1222321  2   68999999999999987653     221111       1567888889998864 


Q ss_pred             CCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          244 ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       244 ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      ++.+            ++|++.+++||++.|+.++.
T Consensus       140 ~~~~------------~~~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        140 IGET------------IFTDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             CCeE------------EecCCCCHHHHHHHHHHHhc
Confidence            4544            47888999999999998874

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.38  E-value=4.8e-13  Score=126.87  Aligned_cols=59  Identities=25%  Similarity=0.388  Sum_probs=54.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus        40 ~~i~i~nl~k~y~~~~~l~~is~~i~~---Gei~gLlGpNGaGKSTLl~~L~Gl~~p---~~G~i   98 (340)
T PRK13536         40 VAIDLAGVSKSYGDKAVVNGLSFTVAS---GECFGLLGPNGAGKSTIARMILGMTSP---DAGKI   98 (340)
T ss_pred             eeEEEEEEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CceEE
Confidence            469999999999999999999999999   999999999999999999999999988   45543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.37  E-value=5.3e-13  Score=119.26  Aligned_cols=68  Identities=22%  Similarity=0.380  Sum_probs=58.8

Q ss_pred             ccEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ++|+++||++.| +++++|+++||++++   |+.++|+|+||||||||+|.|+++.++   ..|.++   .+|..+..
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~---GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~---~~g~~i~~   70 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQ---GEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEIL---FNGVQITK   70 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCC---CcEEEEECCCCCcHHHHHHHHhcccCC---CcceEE---ecccchhc
Confidence            479999999999 889999999999999   999999999999999999999998888   455554   35554433

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.37  E-value=4.3e-13  Score=120.30  Aligned_cols=66  Identities=23%  Similarity=0.307  Sum_probs=58.4

Q ss_pred             ccEEEcceEEEcCCee----eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKW----LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~----il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|+++.|+...    +++++||++.+   |++++|+|+||||||||+++|+|+..|   +.|.+.   ++|..+
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~---Ge~lgivGeSGsGKSTL~r~l~Gl~~p---~~G~I~---~~G~~~   71 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIER---GETLGIVGESGSGKSTLARLLAGLEKP---SSGSIL---LDGKPL   71 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecC---CCEEEEEcCCCCCHHHHHHHHhcccCC---CCceEE---ECCccc
Confidence            4799999999998776    99999999999   999999999999999999999999999   677664   456443

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.37  E-value=2.3e-13  Score=116.29  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=66.4

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKE  144 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~  144 (287)
                      .++++++...-++..+|+++||.+.+   |++|+|+||||||||||+|++|.+..|   |+|.+.   +.|.+++.+   
T Consensus         3 lle~kq~~y~a~~a~il~~isl~v~~---Ge~iaitGPSG~GKStllk~va~Lisp---~~G~l~---f~Ge~vs~~---   70 (223)
T COG4619           3 LLELKQVGYLAGDAKILNNISLSVRA---GEFIAITGPSGCGKSTLLKIVASLISP---TSGTLL---FEGEDVSTL---   70 (223)
T ss_pred             chHHHHHHhhcCCCeeecceeeeecC---CceEEEeCCCCccHHHHHHHHHhccCC---CCceEE---EcCcccccc---
Confidence            45667776666788999999999999   999999999999999999999999999   677776   579988777   


Q ss_pred             hchhhhhhhHH
Q 023118          145 SGEAYFREYES  155 (287)
Q Consensus       145 ~g~~~fr~~e~  155 (287)
                       +.+.||..-.
T Consensus        71 -~pea~Rq~Vs   80 (223)
T COG4619          71 -KPEAYRQQVS   80 (223)
T ss_pred             -ChHHHHHHHH
Confidence             8888885443

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.37  E-value=2.5e-13  Score=117.95  Aligned_cols=68  Identities=18%  Similarity=0.340  Sum_probs=60.3

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      |++++||+|.|+ +.++|+|+||++++   |+.++|+|||||||||++|+|.+...|   +.|.+.   ++|.++..+
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~---Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~---~~~~dl~~l   69 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPK---GEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKIL---VNGHDLSRL   69 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecC---ceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEE---ECCeecccc
Confidence            589999999996 46699999999999   999999999999999999999999999   566665   478777666

>PRK01184 hypothetical protein; Provisional

Probab=99.35  E-value=1.1e-11  Score=106.65  Aligned_cols=162  Identities=16%  Similarity=0.174  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHH---HHHHHhhcCCCeEEecC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYES---KALQKLSLVPQQVVATG  172 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~---~~l~~l~~~~~~via~g  172 (287)
                      .|+|+|++||||||+++ ++..++++++++|+++.+...+..+..+....|+..++..+.   .++..++.  ..+...+
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~i~~~~   79 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTV--PKIREKG   79 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHH--HHHHhcC
Confidence            78999999999999998 678899999999888766542112222222223322221111   11111110  0111112


Q ss_pred             -CceEeccc-c---HHhh----c-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-----H
Q 023118          173 -GGAVVRPL-N---WRFM----R-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-----R  237 (287)
Q Consensus       173 -gG~v~~~~-~---~~~L----~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-----R  237 (287)
                       ..+|.+.- .   .+.+    . ...+||+++|.+.+.+|+..++   +|-    ++...    +.+.+..+.     .
T Consensus        80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~---~~~----d~~~~----~~~~~r~~~q~~~~~  148 (184)
T PRK01184         80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRG---RSD----DPKSW----EELEERDERELSWGI  148 (184)
T ss_pred             CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcC---CCC----ChhhH----HHHHHHHHHHhccCH
Confidence             22233221 1   1222    2 2478999999999999998754   321    01111    223333222     2


Q ss_pred             HhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          238 SEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       238 ~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      .+.+..||++|            |++ .++++...++.+.++.+++.
T Consensus       149 ~~~~~~ad~vI------------~N~-~~~~~l~~~v~~~~~~~~~~  182 (184)
T PRK01184        149 GEVIALADYMI------------VND-STLEEFRARVRKLLERILRS  182 (184)
T ss_pred             HHHHHhcCEEE------------eCC-CCHHHHHHHHHHHHHHHhcc
Confidence            23566688876            433 38999999999998877653

>PRK06217 hypothetical protein; Validated

Probab=99.35  E-value=1.4e-11  Score=106.58  Aligned_cols=103  Identities=22%  Similarity=0.274  Sum_probs=67.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      ..|+|+|++||||||+++.|+..++.+|+|.|.++.+.. +.+.    ...+...++  +..+++.+......|+. |.-
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~-~~~~----~~~~~~~~~--~~~~~~~~~~~~~~vi~-G~~   73 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT-DPPF----TTKRPPEER--LRLLLEDLRPREGWVLS-GSA   73 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC-CCCc----cccCCHHHH--HHHHHHHHhcCCCEEEE-ccH
Confidence            469999999999999999999999999999999884332 3221    112222222  33344444443444554 331


Q ss_pred             eEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcC
Q 023118          175 AVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       175 ~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                       . . .....+. .+.+|||++|++.+.+|+..|.
T Consensus        74 -~-~-~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~  105 (183)
T PRK06217         74 -L-G-WGDPLEPLFDLVVFLTIPPELRLERLRLRE  105 (183)
T ss_pred             -H-H-HHHHHHhhCCEEEEEECCHHHHHHHHHcCc
Confidence             1 1 0111222 3789999999999999999874

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.35  E-value=7.1e-13  Score=116.76  Aligned_cols=65  Identities=28%  Similarity=0.374  Sum_probs=56.5

Q ss_pred             cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.| ++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~---G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~---~~g~~~   66 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRK---GEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVR---IAGEDV   66 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEc
Confidence            47899999999 567899999999999   999999999999999999999999887   566654   356544

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.35  E-value=9.3e-13  Score=119.57  Aligned_cols=59  Identities=22%  Similarity=0.245  Sum_probs=54.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|+..++|+|+||++.+   |+.++|+||||+|||||+|.|.|++.|   ..|.+
T Consensus         3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~---G~~~~iiGPNGaGKSTLlK~iLGll~p---~~G~i   61 (254)
T COG1121           3 PMIEVENLTVSYGNRPVLEDISLSVEK---GEITALIGPNGAGKSTLLKAILGLLKP---SSGEI   61 (254)
T ss_pred             cEEEEeeeEEEECCEeeeeccEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCcC---CcceE
Confidence            469999999999965899999999999   999999999999999999999999998   45554

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.35  E-value=6.5e-13  Score=118.81  Aligned_cols=58  Identities=29%  Similarity=0.441  Sum_probs=53.0

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~   58 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRR---GEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVL   58 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            4689999999988899999999999   999999999999999999999999988   566553

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.34  E-value=8.3e-13  Score=120.88  Aligned_cols=61  Identities=18%  Similarity=0.221  Sum_probs=55.5

Q ss_pred             CCccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           62 NAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        62 ~~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++.+++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   64 (269)
T PRK11831          4 VANLVDMRGVSFTRGNRCIFDNISLTVPR---GKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEI   64 (269)
T ss_pred             ccceEEEeCeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence            34579999999999988999999999999   999999999999999999999999987   55554

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.34  E-value=7.6e-13  Score=116.86  Aligned_cols=64  Identities=27%  Similarity=0.358  Sum_probs=55.7

Q ss_pred             EEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++    ..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~---G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~---~~g~~~   68 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEK---GEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVR---VDGTDI   68 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcC---CCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEE---ECCEeh
Confidence            468999999976    7899999999999   999999999999999999999999988   566654   356554

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.34  E-value=1.1e-12  Score=114.83  Aligned_cols=65  Identities=20%  Similarity=0.253  Sum_probs=57.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++
T Consensus         1 ml~~~~l~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~---~~g~~~   65 (200)
T PRK13540          1 MLDVIELDFDYHDQPLLQQISFHLPA---GGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEIL---FERQSI   65 (200)
T ss_pred             CEEEEEEEEEeCCeeEEeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEE---ECCCcc
Confidence            47899999999988899999999999   999999999999999999999999988   566654   456554

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.34  E-value=1e-12  Score=115.99  Aligned_cols=66  Identities=20%  Similarity=0.297  Sum_probs=56.7

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      +++++|+++.|++  ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~~   68 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITK---GEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIR---FNGQDLT   68 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEehh
Confidence            4789999999964  4699999999999   999999999999999999999999988   566654   4565553

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.34  E-value=8.3e-13  Score=116.34  Aligned_cols=64  Identities=25%  Similarity=0.334  Sum_probs=55.6

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~---~~g~~~   64 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEP---GEFLALLGPSGCGKTTLLRLIAGLERP---DSGEIL---IDGRDV   64 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEc
Confidence            4689999999888899999999999   999999999999999999999999987   566553   345443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.34  E-value=2.5e-13  Score=121.75  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=61.5

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      +++++++++++||+..+++|+||++.+   |++++||||||+||||+.++|+|.+.|   |+|.++   +.|.+|+.
T Consensus         3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~---Gei~~LIGPNGAGKTTlfNlitG~~~P---~~G~v~---~~G~~it~   70 (250)
T COG0411           3 PLLEVRGLSKRFGGLTAVNDVSLEVRP---GEIVGLIGPNGAGKTTLFNLITGFYKP---SSGTVI---FRGRDITG   70 (250)
T ss_pred             ceeeeccceeecCCEEEEeceeEEEcC---CeEEEEECCCCCCceeeeeeecccccC---CCceEE---ECCcccCC
Confidence            468999999999999999999999999   999999999999999999999999999   788775   45665543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.33  E-value=9.4e-13  Score=116.66  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=53.2

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~   58 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRR---GEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRAT   58 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            4789999999988999999999999   999999999999999999999999888   566554

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=1.1e-12  Score=119.42  Aligned_cols=58  Identities=22%  Similarity=0.345  Sum_probs=53.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|++..+++|+||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         1 ml~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   58 (255)
T PRK11248          1 MLQISHLYADYGGKPALEDINLTLES---GELLVVLGPSGCGKTTLLNLIAGFVPY---QHGSI   58 (255)
T ss_pred             CEEEEEEEEEeCCeeeEeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence            47899999999888899999999999   999999999999999999999999987   56655

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.33  E-value=1.2e-12  Score=115.08  Aligned_cols=64  Identities=22%  Similarity=0.260  Sum_probs=55.4

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   64 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEK---GEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVL---FDGKPL   64 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCCch
Confidence            4689999999988899999999999   999999999999999999999999887   566554   345443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.33  E-value=1e-12  Score=117.94  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=56.7

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|+ +..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~   66 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINP---GEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSIL---LEGTDI   66 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEE---ECCEEh
Confidence            478999999998 77899999999999   999999999999999999999999987   566654   355544

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.2e-12  Score=117.58  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=54.7

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++.|+++.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~~sl~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~   61 (241)
T PRK10895          2 ATLTAKNLAKAYKGRRVVEDVSLTVNS---GEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNII   61 (241)
T ss_pred             ceEEEeCcEEEeCCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence            368999999999988999999999999   999999999999999999999999987   566543

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.33  E-value=2.2e-11  Score=113.01  Aligned_cols=147  Identities=17%  Similarity=0.213  Sum_probs=87.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      .+.|+|.|++||||||+++.|.. .|+.++|          +.++..+      ..|   - +.+.+-.......+..+-
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d----------~~~~~L~------~~l---~-~~~~~~~~~~~~av~iD~   64 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALED-LGYYCVD----------NLPPSLL------PKL---V-ELLAQSGGIRKVAVVIDV   64 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHH-cCCeEEC----------CcCHHHH------HHH---H-HHHHhcCCCCCeEEEEcc
Confidence            67899999999999999999963 4665443          3332221      000   0 001110001111222111


Q ss_pred             ---ceE-eccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCC
Q 023118          174 ---GAV-VRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANAD  245 (287)
Q Consensus       174 ---G~v-~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad  245 (287)
                         +.. ....++..|++ |   .+|||+++++++++|+.... ..||++...   ..   .+.+.+..+.+.|+|+.||
T Consensus        65 r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~r-r~RPLl~~~---~l---~e~I~~eR~~l~pl~~~AD  137 (288)
T PRK05416         65 RSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETR-RRHPLSGDG---SL---LEGIELERELLAPLRERAD  137 (288)
T ss_pred             CchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcc-cCCCccCCc---cH---HHHHHHHHhhhhhHHHhCC
Confidence               110 11234444543 4   56999999999999997532 358987531   11   1233343334467777799


Q ss_pred             eEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          246 ATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       246 ~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      ++|            ||++++++|++++|.+.+..
T Consensus       138 ivI------------DTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        138 LVI------------DTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             EEE------------ECCCCCHHHHHHHHHHHHhc
Confidence            775            89999999999999998854

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.3e-12  Score=117.60  Aligned_cols=60  Identities=23%  Similarity=0.312  Sum_probs=54.8

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +.++++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~   61 (241)
T PRK14250          2 NEIEFKEVSYSSFGKEILKDISVKFEG---GAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSIL   61 (241)
T ss_pred             ceEEEEeEEEEeCCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence            358999999999888899999999999   999999999999999999999999987   566553

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.33  E-value=1.3e-12  Score=114.57  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=57.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|+...+++++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~v~---~~g~~~   65 (204)
T PRK13538          1 MLEARNLACERDERILFSGLSFTLNA---GELVQIEGPNGAGKTSLLRILAGLARP---DAGEVL---WQGEPI   65 (204)
T ss_pred             CeEEEEEEEEECCEEEEecceEEECC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEEc
Confidence            47899999999988899999999999   999999999999999999999999988   566654   455544

>PLN02674 adenylate kinase

Probab=99.33  E-value=8.5e-11  Score=106.68  Aligned_cols=168  Identities=18%  Similarity=0.214  Sum_probs=108.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      ..+|+|+||+||||||+++.||..+++.++++|+++.+..     .|..+.+++ ..|+.........++.+.....   
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~-~~G~lvpd~iv~~lv~~~l~~~---  106 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM-DKGELVSDDLVVGIIDEAMKKP---  106 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHH-HcCCccCHHHHHHHHHHHHhCc---
Confidence            4679999999999999999999999999999999987763     255556665 3788887777777776654332   


Q ss_pred             EecCCceEec--cccHH-------hhc-----CCcEEEEecCHHHHHHHHhhcCCC----------C-C-----------
Q 023118          169 VATGGGAVVR--PLNWR-------FMR-----QGITVFLNVPLDALARRIAAVGTD----------S-F-----------  212 (287)
Q Consensus       169 ia~ggG~v~~--~~~~~-------~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~----------~-R-----------  212 (287)
                       .++.|.+++  |.+..       .+.     -..+|+|++|.+.+.+|+..|...          + .           
T Consensus       107 -~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g  185 (244)
T PLN02674        107 -SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG  185 (244)
T ss_pred             -CcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccC
Confidence             233455554  33321       121     146899999999999999876311          0 0           


Q ss_pred             -CCcCCCCcchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          213 -PLLDYDSADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       213 -Pll~~~~~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                       |+... ..|..+....+|..-.+...|   .|++-+..+.          ||.+ .++++|.+.|...+
T Consensus       186 ~~L~~R-~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~----------Ida~-~~~~eV~~~i~~~l  243 (244)
T PLN02674        186 EPLIQR-KDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVAN----------LHAE-KPPKEVTAEVQKAL  243 (244)
T ss_pred             CccccC-CCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEE----------EECC-CCHHHHHHHHHHHh
Confidence             12221 223332233344333334444   4655443332          5665 48999999988765

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.33  E-value=1.1e-12  Score=116.36  Aligned_cols=65  Identities=25%  Similarity=0.291  Sum_probs=56.4

Q ss_pred             cEEEcceEEEcCCe----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGK----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++.    .+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   69 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKK---GETLGLVGESGSGKSTLARAILGLLKP---TSGSII---FDGKDL   69 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEc
Confidence            47899999999765    799999999999   999999999999999999999999988   566654   456554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.32  E-value=1.4e-12  Score=121.90  Aligned_cols=59  Identities=22%  Similarity=0.294  Sum_probs=54.7

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~---Gei~gllGpNGaGKSTLl~~l~Gl~~p---~~G~v   64 (306)
T PRK13537          6 APIDFRNVEKRYGDKLVVDGLSFHVQR---GECFGLLGPNGAGKTTTLRMLLGLTHP---DAGSI   64 (306)
T ss_pred             ceEEEEeEEEEECCeEEEecceEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence            479999999999988999999999999   999999999999999999999999988   56643

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.32  E-value=1.4e-12  Score=117.66  Aligned_cols=58  Identities=22%  Similarity=0.333  Sum_probs=53.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i   60 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKP---GEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTI   60 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEE
Confidence            68999999999888899999999999   999999999999999999999999877   55654

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.32  E-value=1.3e-12  Score=117.34  Aligned_cols=59  Identities=24%  Similarity=0.308  Sum_probs=54.1

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         2 ~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~   60 (239)
T cd03296           2 SIEVRNVSKRFGDFVALDDVSLDIPS---GELVALLGPSGSGKTTLLRLIAGLERP---DSGTIL   60 (239)
T ss_pred             EEEEEeEEEEECCEEeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            48899999999988899999999999   999999999999999999999999887   566553

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.32  E-value=1.2e-12  Score=114.99  Aligned_cols=64  Identities=23%  Similarity=0.350  Sum_probs=55.7

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~---G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   64 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKK---GEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTII---IDGLKL   64 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEC
Confidence            4689999999988899999999999   999999999999999999999999988   566654   345443

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.32  E-value=1.3e-12  Score=124.34  Aligned_cols=60  Identities=17%  Similarity=0.194  Sum_probs=55.7

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I   63 (351)
T PRK11432          4 KNFVVLKNITKRFGSNTVIDNLNLTIKQ---GTMVTLLGPSGCGKTTVLRLVAGLEKP---TEGQI   63 (351)
T ss_pred             CcEEEEEeEEEEECCeEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHHCCCCC---CceEE
Confidence            4579999999999988899999999999   999999999999999999999999988   56655

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.32  E-value=1.3e-12  Score=116.97  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|++++|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i   58 (236)
T TIGR03864         1 ALEVAGLSFAYGARRALDDVSFTVRP---GEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQI   58 (236)
T ss_pred             CEEEEeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CceEE
Confidence            47899999999988999999999999   999999999999999999999999987   56655

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.32  E-value=1.3e-12  Score=116.55  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i   57 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQ---GEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKI   57 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence            4689999999988899999999999   999999999999999999999999988   56654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.32  E-value=1.4e-12  Score=121.48  Aligned_cols=59  Identities=24%  Similarity=0.375  Sum_probs=53.9

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i   61 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKVVVNDLSFTIAR---GECFGLLGPNGAGKSTIARMLLGMISP---DRGKI   61 (303)
T ss_pred             cEEEEEeEEEEeCCeEEEcceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            368999999999988899999999999   999999999999999999999999887   45543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.32  E-value=1.1e-12  Score=115.93  Aligned_cols=58  Identities=22%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|++++|++..+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~   58 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPE---GEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIR   58 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE
Confidence            4789999999888899999999999   999999999999999999999999988   566553

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.32  E-value=1.3e-12  Score=116.60  Aligned_cols=65  Identities=20%  Similarity=0.257  Sum_probs=56.6

Q ss_pred             cEEEcceEEEcCCe----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGK----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++.    .+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   69 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPK---GEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVL---VDGTDL   69 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEc
Confidence            47899999999866    899999999999   999999999999999999999999988   566554   355544

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.32  E-value=1.4e-12  Score=117.05  Aligned_cols=59  Identities=17%  Similarity=0.289  Sum_probs=53.9

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus         1 ~l~~~~l~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~   59 (240)
T PRK09493          1 MIEFKNVSKHFGPTQVLHNIDLNIDQ---GEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLI   59 (240)
T ss_pred             CEEEEeEEEEECCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            47899999999888899999999999   999999999999999999999999887   566553

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.32  E-value=1.2e-12  Score=116.36  Aligned_cols=65  Identities=22%  Similarity=0.305  Sum_probs=56.5

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchh
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+     .+   ++|.+.   ++|.++.
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~---~~g~~~~   70 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPK---GEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVL---LDGKDIY   70 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEE---ECCEEhh
Confidence            4789999999888899999999999   9999999999999999999999998     66   567654   4565543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.32  E-value=1.3e-12  Score=116.44  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=57.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++
T Consensus         7 ~i~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   71 (225)
T PRK10247          7 LLQLQNVGYLAGDAKILNNISFSLRA---GEFKLITGPSGCGKSTLLKIVASLISP---TSGTLL---FEGEDI   71 (225)
T ss_pred             eEEEeccEEeeCCceeeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEE---ECCEEc
Confidence            69999999999988899999999999   999999999999999999999999877   677664   455444

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.32  E-value=2e-12  Score=118.04  Aligned_cols=59  Identities=20%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+
T Consensus        10 ~~l~i~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i   68 (265)
T PRK10575         10 TTFALRNVSFRVPGRTLLHPLSLTFPA---GKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEI   68 (265)
T ss_pred             ceEEEeeEEEEECCEEEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEE
Confidence            479999999999888999999999999   999999999999999999999999887   55654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.31  E-value=1.4e-12  Score=114.84  Aligned_cols=64  Identities=25%  Similarity=0.365  Sum_probs=55.7

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~---~~g~~~   64 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIAD---GEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIY---IGGRDV   64 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEEC
Confidence            4689999999988899999999999   999999999999999999999999988   566554   345443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.31  E-value=1.4e-10  Score=99.53  Aligned_cols=159  Identities=16%  Similarity=0.241  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCc----hhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTS----VAQIFKESGEAYFREYESKALQKLSLVPQQVVA  170 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~----i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via  170 (287)
                      .|+|+|++||||||+++.|+..++..+++.|+++.+... +..    +.+++ ..|...-......++++......    
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~----   75 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADG----   75 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccC----
Confidence            378999999999999999999999999999888766542 222    22222 23333333333344443322111    


Q ss_pred             cCCceEecc--cc------HH-hhc----CCcEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          171 TGGGAVVRP--LN------WR-FMR----QGITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       171 ~ggG~v~~~--~~------~~-~L~----~g~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                       +.|.|++.  .+      |. .+.    -..+|||++|++.+.+|+..|... .|+      .+.. +.+..-.+.|.+
T Consensus        76 -~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~------dd~~-e~~~~r~~~y~~  147 (183)
T TIGR01359        76 -SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRV------DDNI-ESIKKRFRTYNE  147 (183)
T ss_pred             -CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCC------CCCH-HHHHHHHHHHHH
Confidence             22333322  21      11 222    146899999999999999876421 111      1111 111111112221


Q ss_pred             -HH---hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          237 -RS---EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       237 -R~---~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                       ..   ..|+..+..+          +||++ .++++|.+.|.+.+
T Consensus       148 ~~~~i~~~~~~~~~~~----------~Id~~-~~~~~v~~~i~~~l  182 (183)
T TIGR01359       148 QTLPVIEHYENKGKVK----------EINAE-GSVEEVFEDVEKIF  182 (183)
T ss_pred             HHHHHHHHHHhCCCEE----------EEECC-CCHHHHHHHHHHHh
Confidence             11   3344443322          26877 58999999888754

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.31  E-value=1.5e-12  Score=110.78  Aligned_cols=64  Identities=28%  Similarity=0.364  Sum_probs=56.2

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++.++++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~---~~g~~~   64 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRR---GEVHALLGENGAGKSTLMKILSGLYKP---DSGEIL---VDGKEV   64 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEC
Confidence            4689999999888899999999999   999999999999999999999999988   566654   456544

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.31  E-value=1.3e-12  Score=115.48  Aligned_cols=64  Identities=23%  Similarity=0.284  Sum_probs=55.6

Q ss_pred             EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      |+++|+++.|++  +++|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~   66 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYK---GEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAY---INGYSI   66 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEec
Confidence            478999999986  7899999999999   999999999999999999999999988   566654   355544

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=1.3e-12  Score=119.61  Aligned_cols=58  Identities=21%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         1 ml~~~~l~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   58 (271)
T PRK13638          1 MLATSDLWFRYQDEPVLKGLNLDFSL---SPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAV   58 (271)
T ss_pred             CeEEEEEEEEcCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CccEE
Confidence            48899999999888899999999999   999999999999999999999999988   56654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.31  E-value=1.3e-12  Score=116.69  Aligned_cols=64  Identities=25%  Similarity=0.316  Sum_probs=55.5

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~   64 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRP---GEIHGLIGPNGAGKTTLFNLISGFLRP---TSGSVL---FDGEDI   64 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEE---ECCEEC
Confidence            4689999999888899999999999   999999999999999999999999987   566553   345443

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10908 cell division protein FtsE; Provisional

Probab=99.31  E-value=1.5e-12  Score=115.49  Aligned_cols=65  Identities=18%  Similarity=0.305  Sum_probs=57.0

Q ss_pred             cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.| ++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~i   66 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRP---GEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIW---FSGHDI   66 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEEc
Confidence            47899999999 677899999999999   999999999999999999999999987   677654   456554

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.31  E-value=1.7e-12  Score=118.49  Aligned_cols=59  Identities=17%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus        11 ~~l~i~~l~~~~~~~~il~~isl~i~~---Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i   69 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVLNQLDLHIPA---GQFVAVVGRSGCGKSTLLRLLAGLETP---SAGEL   69 (257)
T ss_pred             CcEEEEEEEEEECCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEE
Confidence            569999999999988899999999999   999999999999999999999999987   55554

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.31  E-value=1.5e-12  Score=116.57  Aligned_cols=58  Identities=22%  Similarity=0.334  Sum_probs=52.4

Q ss_pred             EEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|+++.|++ ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~   59 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINP---GEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVL   59 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEE
Confidence            468999999987 7899999999999   999999999999999999999999987   566553

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.31  E-value=1.7e-12  Score=114.71  Aligned_cols=65  Identities=22%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             cEEEcceEEEcCCe----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGK----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++.    .+++++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~   69 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKP---GEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFAT---VDGFDV   69 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEE---ECCEEc
Confidence            47899999999865    799999999999   999999999999999999999999988   566554   355544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.30  E-value=1.5e-12  Score=114.69  Aligned_cols=63  Identities=27%  Similarity=0.302  Sum_probs=54.7

Q ss_pred             EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++
T Consensus         1 ~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~---~~g~~~   63 (213)
T cd03235           1 EVEDLTVSYGGHPVLEDVSFEVKP---GEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIR---VFGKPL   63 (213)
T ss_pred             CcccceeEECCEEeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEE---ECCccH
Confidence            368999999888899999999999   999999999999999999999999988   566654   355544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.30  E-value=2.4e-12  Score=113.87  Aligned_cols=66  Identities=21%  Similarity=0.291  Sum_probs=58.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|++++|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.+   +.|.+.   ++|.++
T Consensus        10 ~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~i   75 (214)
T PRK13543         10 PLLAAHALAFSRNEEPVFGPLDFHVDA---GEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQ---IDGKTA   75 (214)
T ss_pred             ceEEEeeEEEecCCceeeecceEEECC---CCEEEEEcCCCCCHHHHHHHHhCCCCC---CCeeEE---ECCEEc
Confidence            479999999999888899999999999   999999999999999999999999988   566554   355544

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.30  E-value=2e-12  Score=113.49  Aligned_cols=64  Identities=23%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++.++|+++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~   64 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKK---GEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEIT---FDGKSY   64 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEE---ECCCcc
Confidence            4689999999888999999999999   999999999999999999999999987   566654   456544

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.30  E-value=2.3e-12  Score=113.44  Aligned_cols=59  Identities=25%  Similarity=0.321  Sum_probs=54.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~   60 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAA---GEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIK   60 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE
Confidence            58999999999888899999999999   999999999999999999999999887   566554

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=1.7e-12  Score=116.21  Aligned_cols=60  Identities=20%  Similarity=0.194  Sum_probs=54.9

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~   63 (237)
T PRK11614          4 VMLSFDKVSAHYGKIQALHEVSLHINQ---GEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIV   63 (237)
T ss_pred             cEEEEEeEEEeeCCceeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEE
Confidence            369999999999888899999999999   999999999999999999999999987   566553

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.30  E-value=1.8e-12  Score=115.48  Aligned_cols=58  Identities=24%  Similarity=0.276  Sum_probs=52.9

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~   58 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPK---GEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIR   58 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEE
Confidence            4689999999988999999999999   999999999999999999999999988   566553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.30  E-value=1.5e-12  Score=113.89  Aligned_cols=68  Identities=21%  Similarity=0.308  Sum_probs=61.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      |++++|++|+|+.+.+++++|+++++   |...+|+||||+|||||+.+++++++.   |+|.+.   ..|..++..
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~---g~iTs~IGPNGAGKSTLLS~~sRL~~~---d~G~i~---i~g~~~~~~   68 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPK---GGITSIIGPNGAGKSTLLSMMSRLLKK---DSGEIT---IDGLELTST   68 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecC---CceeEEECCCCccHHHHHHHHHHhccc---cCceEE---EeeeecccC
Confidence            57899999999999999999999999   999999999999999999999999999   888775   467666543

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=2.3e-12  Score=116.84  Aligned_cols=58  Identities=19%  Similarity=0.263  Sum_probs=53.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|++++|++..+|+++||++++   |++++|+|+||||||||+++|+|.+.+   ++|.+
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i   59 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPT---GKITALIGPNGCGKSTLLKCFARLLTP---QSGTV   59 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEE
Confidence            58999999999988999999999999   999999999999999999999999887   55644

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.30  E-value=1.9e-12  Score=111.40  Aligned_cols=64  Identities=22%  Similarity=0.333  Sum_probs=55.9

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   64 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEA---GEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSIL---IDGEDL   64 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEEc
Confidence            4689999999888899999999999   999999999999999999999999887   566654   356544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.30  E-value=2.4e-12  Score=115.57  Aligned_cols=59  Identities=22%  Similarity=0.248  Sum_probs=54.4

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus         2 ~i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~   60 (242)
T TIGR03411         2 ILYLEGLSVSFDGFKALNDLSLYVDP---GELRVIIGPNGAGKTTMMDVITGKTRP---DEGSVL   60 (242)
T ss_pred             eEEEEeeEEEcCCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEE
Confidence            58999999999888899999999999   999999999999999999999999987   566554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=2.3e-12  Score=116.51  Aligned_cols=60  Identities=20%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~   63 (255)
T PRK11300          4 PLLSVSGLMMRFGGLLAVNNVNLEVRE---QEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTIL   63 (255)
T ss_pred             ceEEEeeEEEEECCEEEEEeeeeEEcC---CeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEE
Confidence            469999999999988999999999999   999999999999999999999999887   566553

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=2e-12  Score=115.65  Aligned_cols=67  Identities=19%  Similarity=0.331  Sum_probs=57.6

Q ss_pred             ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++++|+++.|+.    ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~i~   74 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGE---GEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVI---FNGQPMS   74 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE---ECCEEcC
Confidence            36999999999964    5799999999999   999999999999999999999999987   566654   4565543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.30  E-value=2.1e-12  Score=112.71  Aligned_cols=64  Identities=27%  Similarity=0.337  Sum_probs=56.3

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   64 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNA---GEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVR---WNGTAL   64 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEE---ECCEEc
Confidence            4689999999988999999999999   999999999999999999999999988   566654   456554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.30  E-value=2.6e-12  Score=114.29  Aligned_cols=66  Identities=27%  Similarity=0.285  Sum_probs=57.0

Q ss_pred             ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|+++.|++    ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~---~~g~~~   74 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKR---GETIALIGESGSGKSTLLAILAGLDDG---SSGEVS---LVGQPL   74 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEE---ECCEEc
Confidence            46999999999975    3699999999999   999999999999999999999999988   566654   456544

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.30  E-value=2.4e-12  Score=113.91  Aligned_cols=66  Identities=21%  Similarity=0.324  Sum_probs=56.5

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      +++++|+++.|++    ..+++++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++.
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~~   70 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGK---GEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVL---FNGQSLS   70 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEEhh
Confidence            3789999999964    5799999999999   999999999999999999999999988   566654   4565543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.30  E-value=2.1e-12  Score=123.11  Aligned_cols=60  Identities=20%  Similarity=0.195  Sum_probs=55.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .+++++|++++|++..+|+++||++.+   |++++|+||||||||||+++|||.+.|   ++|.+.
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~GpsGsGKSTLLr~iaGl~~p---~~G~I~   62 (353)
T TIGR03265         3 PYLSIDNIRKRFGAFTALKDISLSVKK---GEFVCLLGPSGCGKTTLLRIIAGLERQ---TAGTIY   62 (353)
T ss_pred             cEEEEEEEEEEeCCeEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHCCCCC---CceEEE
Confidence            469999999999988899999999999   999999999999999999999999988   666553

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=2.3e-12  Score=115.72  Aligned_cols=59  Identities=17%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|+++.+|+++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~   60 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQ---GETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLN   60 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            48899999999988899999999999   999999999999999999999999887   566554

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.29  E-value=2e-12  Score=114.51  Aligned_cols=58  Identities=24%  Similarity=0.298  Sum_probs=52.4

Q ss_pred             EEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|+++.|++    ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~   62 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEE---GEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVL   62 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            468999999987    7899999999999   999999999999999999999999887   566553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.29  E-value=2.7e-12  Score=116.08  Aligned_cols=53  Identities=23%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.++
T Consensus         5 ~~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14242          5 PKMEARGLSFFYGDFQALHDISLEFEQ---NQVTALIGPSGCGKSTFLRCLNRMND   57 (253)
T ss_pred             cEEEEeeeEEEECCeeeecceeEEEeC---CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            579999999999988899999999999   99999999999999999999999865

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.29  E-value=2.4e-12  Score=116.13  Aligned_cols=53  Identities=25%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.|
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p   53 (247)
T TIGR00972         1 AIEIENLNLFYGEKEALKNINLDIPK---NQVTALIGPSGCGKSTLLRSLNRMNDL   53 (247)
T ss_pred             CEEEEEEEEEECCeeeecceeEEECC---CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            47899999999988899999999999   999999999999999999999999986

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=2e-12  Score=123.32  Aligned_cols=59  Identities=22%  Similarity=0.286  Sum_probs=54.5

Q ss_pred             cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.| ++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~   62 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVAD---GEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIW   62 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcC---CCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEE
Confidence            58999999999 788899999999999   999999999999999999999999988   666553

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.29  E-value=2.4e-12  Score=113.23  Aligned_cols=63  Identities=24%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+++++||++.+   | +++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~---g-~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~   63 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGP---G-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIR---IDGQDV   63 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcC---C-cEEEECCCCCCHHHHHHHHhCCCCC---CccEEE---ECCCcc
Confidence            4689999999888899999999999   9 9999999999999999999999988   577654   456544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.29  E-value=2.4e-12  Score=117.15  Aligned_cols=59  Identities=27%  Similarity=0.362  Sum_probs=54.0

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~   60 (258)
T PRK13548          2 MLEARNLSVRLGGRTLLDDVSLTLRP---GEVVAILGPNGAGKSTLLRALSGELSP---DSGEVR   60 (258)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEE
Confidence            58899999999988899999999999   999999999999999999999999887   566543

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.29  E-value=1.8e-12  Score=113.58  Aligned_cols=63  Identities=22%  Similarity=0.348  Sum_probs=54.6

Q ss_pred             EEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           67 ESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        67 ~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++|+++.|++ ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~   64 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYA---GEIIALTGKNGAGKTTLAKILAGLIKE---SSGSIL---LNGKPI   64 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE---ECCEEh
Confidence            36799999987 7899999999999   999999999999999999999999988   666654   355544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.29  E-value=3.8e-11  Score=102.36  Aligned_cols=149  Identities=17%  Similarity=0.260  Sum_probs=85.7

Q ss_pred             EcCCCCCHHHHHHHHHhccCCccccchhH-----HHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcC-CCeEEecCC
Q 023118          100 VGMMGSGKTTVGEILSDALDYTFADSDKY-----VEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLV-PQQVVATGG  173 (287)
Q Consensus       100 vG~~GsGKSTl~k~La~~l~~~fid~d~~-----ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~-~~~via~gg  173 (287)
                      +|+|||||||+++.|++.++..|+|+|.+     +.++..|....+.   .-..+....+ .+...+... ...|+.++.
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~viv~s~   76 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD---DRKPWLQALN-DAAFAMQRTNKVSLIVCSA   76 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh---hHHHHHHHHH-HHHHHHHHcCCceEEEEec
Confidence            69999999999999999999999999976     3333335443321   1111222222 222222211 222333322


Q ss_pred             ceEeccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEE
Q 023118          174 GAVVRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATV  248 (287)
Q Consensus       174 G~v~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v  248 (287)
                         .....++.+++ +   ..|||++|++++.+|+..|..+  +  .  ..       +-+...+..-+|.... .+.+ 
T Consensus        77 ---~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~--~--a--~~-------~vl~~Q~~~~ep~~~~e~~~~-  139 (163)
T PRK11545         77 ---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH--F--F--KT-------QMLVTQFETLQEPGADETDVL-  139 (163)
T ss_pred             ---chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCC--C--C--CH-------HHHHHHHHHcCCCCCCCCCEE-
Confidence               12333444543 2   5799999999999999987532  1  1  11       1222223333343322 2232 


Q ss_pred             eccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          249 SLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       249 ~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                                ++|++. +++++++.++.++.+
T Consensus       140 ----------~id~~~-~~~~~~~~~~~~~~~  160 (163)
T PRK11545        140 ----------VVDIDQ-PLEGVVASTIEVIKK  160 (163)
T ss_pred             ----------EEeCCC-CHHHHHHHHHHHHHH
Confidence                      268875 899999999999865

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.29  E-value=1.9e-12  Score=113.77  Aligned_cols=63  Identities=24%  Similarity=0.329  Sum_probs=54.6

Q ss_pred             EEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           67 ESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        67 ~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++|+++.|++  ..+|+++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~---G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   65 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKK---GEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVL---VDGKDL   65 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEEc
Confidence            36789999987  7899999999999   999999999999999999999999988   667654   355544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.29  E-value=2.8e-12  Score=114.29  Aligned_cols=69  Identities=20%  Similarity=0.298  Sum_probs=62.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      ++++++|++..||..++|+++||++++   |++++|+|+||+||||+++.|+|...+   .+|.+.   ++|.+|+..
T Consensus         2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~---Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~---~~G~dit~~   70 (237)
T COG0410           2 PMLEVENLSAGYGKIQALRGVSLEVER---GEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRII---FDGEDITGL   70 (237)
T ss_pred             CceeEEeEeecccceeEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEE---ECCeecCCC
Confidence            479999999999999999999999999   999999999999999999999999999   477765   567777544

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.28  E-value=2.5e-12  Score=115.23  Aligned_cols=58  Identities=22%  Similarity=0.314  Sum_probs=51.9

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~i  129 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+  .|   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~   60 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKK---GEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTIL   60 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEE
Confidence            4689999999988899999999999   9999999999999999999999995  34   566553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.28  E-value=3.3e-12  Score=115.96  Aligned_cols=60  Identities=23%  Similarity=0.189  Sum_probs=54.9

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus         5 ~~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~   64 (258)
T PRK11701          5 PLLSVRGLTKLYGPRKGCRDVSFDLYP---GEVLGIVGESGSGKTTLLNALSARLAP---DAGEVH   64 (258)
T ss_pred             ceEEEeeeEEEcCCceeeeeeeEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEE
Confidence            469999999999888899999999999   999999999999999999999999988   566553

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3e-12  Score=115.74  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=51.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~   56 (253)
T PRK14267          3 FAIETVNLRVYYGSNHVIKGVDLKIPQ---NGVFALMGPSGCGKSTLLRTFNRLLEL   56 (253)
T ss_pred             ceEEEEeEEEEeCCeeeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCc
Confidence            468999999999888899999999999   999999999999999999999999876

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.28  E-value=2.8e-12  Score=117.92  Aligned_cols=53  Identities=19%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+
T Consensus         1 ml~~~nl~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~laG~~~p   53 (272)
T PRK13547          1 MLTADHLHVARRHRAILRDLSLRIEP---GRVTALLGRNGAGKSTLLKALAGDLTG   53 (272)
T ss_pred             CeEEEEEEEEECCEeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            47899999999988999999999999   999999999999999999999999987

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.9e-12  Score=116.55  Aligned_cols=55  Identities=22%  Similarity=0.137  Sum_probs=51.5

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+
T Consensus        11 ~~~l~i~nl~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~   65 (269)
T PRK14259         11 NIIISLQNVTISYGTFEAVKNVFCDIPR---GKVTALIGPSGCGKSTVLRSLNRMNDL   65 (269)
T ss_pred             CceEEEEeEEEEECCEEEEcceEEEEcC---CCEEEEECCCCCCHHHHHHHHhccccc
Confidence            3579999999999988899999999999   999999999999999999999998763

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.3e-12  Score=116.06  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=50.8

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus        11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         11 EVYQINGMNLWYGQHHALKNINLSIPE---NEVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             ceEEEeeEEEEECCeeeEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            579999999999988899999999999   99999999999999999999999986

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.4e-12  Score=115.23  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~   55 (250)
T PRK14247          2 NKIEIRDLKVSFGQVEVLDGVNLEIPD---NTITALMGPSGSGKSTLLRVFNRLIEL   55 (250)
T ss_pred             ceEEEEeeEEEECCeeeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            358999999999988899999999999   999999999999999999999999864

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.28  E-value=5.5e-12  Score=111.40  Aligned_cols=68  Identities=26%  Similarity=0.417  Sum_probs=60.8

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      ||+.+|++.+..++.+++++||++.+   |+..+|+||||+|||||+|.|+|.+.|   ++|.+-   ++|.++...
T Consensus         1 mi~a~nls~~~~Gr~ll~~vsl~~~p---Gev~ailGPNGAGKSTlLk~LsGel~p---~~G~v~---~~g~~l~~~   68 (259)
T COG4559           1 MIRAENLSYSLAGRRLLDGVSLDLRP---GEVLAILGPNGAGKSTLLKALSGELSP---DSGEVT---LNGVPLNSW   68 (259)
T ss_pred             CeeeeeeEEEeecceeccCcceeccC---CcEEEEECCCCccHHHHHHHhhCccCC---CCCeEe---eCCcChhhC
Confidence            57899999999999999999999999   999999999999999999999999999   677664   467666543

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.28  E-value=3.2e-12  Score=116.69  Aligned_cols=59  Identities=17%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             cEEEcceEEEcC---------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLD---------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~---------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|+         ++.+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~   69 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEE---GETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVS   69 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence            589999999995         36799999999999   999999999999999999999999987   566553

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.8e-12  Score=116.43  Aligned_cols=54  Identities=17%  Similarity=0.118  Sum_probs=51.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus        18 ~~l~~~nl~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   71 (267)
T PRK14235         18 IKMRARDVSVFYGEKQALFDVDLDIPE---KTVTAFIGPSGCGKSTFLRCLNRMNDT   71 (267)
T ss_pred             ceEEEEeEEEEECCEEEEEEEEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhccc
Confidence            479999999999988899999999999   999999999999999999999999875

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.9e-12  Score=116.10  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=54.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|++++|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+
T Consensus         6 ~~l~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i   64 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTVAENLTVEIPD---GHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHV   64 (265)
T ss_pred             cEEEEEEEEEEECCEEEeeecceEECC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEE
Confidence            468999999999988899999999999   999999999999999999999999987   56654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.28  E-value=3.6e-12  Score=115.23  Aligned_cols=60  Identities=23%  Similarity=0.227  Sum_probs=54.7

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~   61 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGKGCRDVSFDLYP---GEVLGIVGESGSGKSTLLGCLAGRLAP---DHGTAT   61 (253)
T ss_pred             ceEEEeeeEEEeCCceEeecceEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence            368999999999888899999999999   999999999999999999999999988   566553

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=3.8e-12  Score=116.32  Aligned_cols=54  Identities=19%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus        19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~   72 (268)
T PRK14248         19 EHILEVKDLSIYYGEKRAVNDISMDIEK---HAVTALIGPSGCGKSTFLRSINRMND   72 (268)
T ss_pred             CceEEEEEEEEEeCCceeeeceEEEEcC---CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            3579999999999988899999999999   99999999999999999999999764

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.27  E-value=3e-12  Score=123.95  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=54.7

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|+++.+|+++||++.+   |++++|+||||||||||+|+|+|.+.|   ++|.+
T Consensus         2 ~~L~~~nls~~y~~~~vL~~vs~~i~~---Geiv~liGpNGaGKSTLLk~LaGll~p---~sG~I   60 (402)
T PRK09536          2 PMIDVSDLSVEFGDTTVLDGVDLSVRE---GSLVGLVGPNGAGKTTLLRAINGTLTP---TAGTV   60 (402)
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEECC---CCEEEEECCCCchHHHHHHHHhcCCCC---CCcEE
Confidence            368999999999999999999999999   999999999999999999999999988   56654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=3.9e-12  Score=115.10  Aligned_cols=53  Identities=17%  Similarity=0.122  Sum_probs=50.5

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++++|+++.|++..+|+|+||++.+   |++++|+||||||||||+++|+|.++
T Consensus         5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14261          5 IILSTKNLNLWYGEKHALYDITISIPK---NRVTALIGPSGCGKSTLLRCFNRMND   57 (253)
T ss_pred             ceEEEeeeEEEECCeeeeeeeEEEECC---CcEEEEECCCCCCHHHHHHHHhcccc
Confidence            479999999999988999999999999   99999999999999999999999876

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.27  E-value=2.8e-12  Score=112.77  Aligned_cols=64  Identities=22%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             EEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++ +.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~i   65 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISA---GEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIR---VNGQDV   65 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE---ECCEEc
Confidence            468999999964 6899999999999   999999999999999999999999887   566654   355544

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=5.6e-12  Score=127.10  Aligned_cols=87  Identities=22%  Similarity=0.283  Sum_probs=69.8

Q ss_pred             ccccccccCCCcCCCCCCCccEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           45 KRHRTLNLVPAHVSKDSNAHDVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .+++....+..+... .....++++||+|.|.   +.++|+|+||+++|   |+.++||||||+||||++.+|-..+.| 
T Consensus       446 dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~p---Ge~vALVGPSGsGKSTiasLL~rfY~P-  520 (716)
T KOG0058|consen  446 DRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRP---GEVVALVGPSGSGKSTIASLLLRFYDP-  520 (716)
T ss_pred             ccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCC---CCEEEEECCCCCCHHHHHHHHHHhcCC-
Confidence            344444444222222 3334699999999996   45699999999999   999999999999999999999999999 


Q ss_pred             cccchhHHHHHhCCCchhhh
Q 023118          122 FADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus       122 fid~d~~ie~~~~G~~i~~~  141 (287)
                        .+|.+.   .+|.+|.++
T Consensus       521 --tsG~Il---lDG~~i~~~  535 (716)
T KOG0058|consen  521 --TSGRIL---LDGVPISDI  535 (716)
T ss_pred             --CCCeEE---ECCeehhhc
Confidence              688776   589998887

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.27  E-value=4.3e-12  Score=120.15  Aligned_cols=107  Identities=21%  Similarity=0.255  Sum_probs=82.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCCc------cccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCC
Q 023118           97 LFLVGMMGSGKTTVGEILSDALDYT------FADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVP  165 (287)
Q Consensus        97 i~LvG~~GsGKSTl~k~La~~l~~~------fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~  165 (287)
                      ++|+|++||||||+++.|+..+...      |+|.|+++     +... |.++.++|     ..||..-.+.++      
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~-~~~~~~~~-----k~~R~~i~~~le------   69 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQ-SREIPSQW-----KQFRQELLKYLE------   69 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhc-CCCcHHHH-----HHHHHHHHHHHH------
Confidence            5799999999999999999888744      89999998     5554 88998886     667733222222      


Q ss_pred             CeEEecCCceEecc------ccH----Hhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcC
Q 023118          166 QQVVATGGGAVVRP------LNW----RFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLD  216 (287)
Q Consensus       166 ~~via~ggG~v~~~------~~~----~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~  216 (287)
                      +.|+++|||+++++      ..|    ..|+ +|++|||+++++.+..|+.... -.||++.
T Consensus        70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~-Lsrpllv  130 (340)
T TIGR03575        70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPA-VSRPLCL  130 (340)
T ss_pred             HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHH-HhCCCCc
Confidence            45788999999865      445    6776 4999999999999999997532 2588654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.27  E-value=3.4e-12  Score=109.29  Aligned_cols=64  Identities=27%  Similarity=0.303  Sum_probs=55.4

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~---~~g~~~   64 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEK---GEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIK---VLGKDI   64 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEc
Confidence            4689999999887899999999999   999999999999999999999999887   566554   355544

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.27  E-value=3.4e-12  Score=118.83  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=53.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++++|++++|++..+|+|+||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~---Gei~~l~G~NGaGKTTLl~~l~Gl~~~---~~G~i   59 (301)
T TIGR03522         2 SIRVSSLTKLYGTQNALDEVSFEAQK---GRIVGFLGPNGAGKSTTMKIITGYLPP---DSGSV   59 (301)
T ss_pred             EEEEEEEEEEECCEEEEEEeEEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            38899999999999999999999999   999999999999999999999999887   56643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.27  E-value=3.1e-12  Score=121.39  Aligned_cols=58  Identities=16%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             cEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |++++|++++|+    +..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~---Gei~~iiG~nGsGKSTLlk~L~Gl~~p---~~G~I   62 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPA---GEIFGVIGASGAGKSTLIRCINLLERP---TSGRV   62 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEE
Confidence            478999999997    46899999999999   999999999999999999999999988   55544

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.27  E-value=3.7e-12  Score=122.29  Aligned_cols=60  Identities=30%  Similarity=0.362  Sum_probs=55.1

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+   +.|.+
T Consensus        12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~---Ge~~~LlGpsGsGKSTLLr~IaGl~~p---~~G~I   71 (375)
T PRK09452         12 SPLVELRGISKSFDGKEVISNLDLTINN---GEFLTLLGPSGCGKTTVLRLIAGFETP---DSGRI   71 (375)
T ss_pred             CceEEEEEEEEEECCeEEEeeeEEEEeC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEE
Confidence            3479999999999988899999999999   999999999999999999999999988   56654

>PRK06547 hypothetical protein; Provisional

Probab=99.27  E-value=4.7e-12  Score=109.15  Aligned_cols=144  Identities=20%  Similarity=0.217  Sum_probs=90.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCc-----hhhhhhhhchhhhhhh--HHHHHHH--hhcC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTS-----VAQIFKESGEAYFREY--ESKALQK--LSLV  164 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~-----i~~~~~~~g~~~fr~~--e~~~l~~--l~~~  164 (287)
                      -..|+|.|++||||||+++.|+..++..+++.|.++.... +.+     +.+.+...|...++..  .......  ....
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~   93 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEP   93 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCC
Confidence            3578888999999999999999999999999998874321 322     2222322343332210  0000000  1112


Q ss_pred             CCeEEecCCceEeccccHHhhcC-C--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh
Q 023118          165 PQQVVATGGGAVVRPLNWRFMRQ-G--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY  241 (287)
Q Consensus       165 ~~~via~ggG~v~~~~~~~~L~~-g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y  241 (287)
                      ...+|..|.++. .+..+..+.+ |  ++|||++|.+.+.+|+..|..+.+|..     +.|    ....+.|-...+-.
T Consensus        94 ~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~~~~~~-----~~w----~~~e~~~~~~~~~~  163 (172)
T PRK06547         94 GRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALARDPDYAPHW-----EMW----AAQEERHFARYDPR  163 (172)
T ss_pred             CCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCchhhHHH-----HHH----HHHHHHHHhcCCCh
Confidence            346778888876 4556666653 4  689999999999999998865544332     122    33445555555656


Q ss_pred             hhCCeEE
Q 023118          242 ANADATV  248 (287)
Q Consensus       242 ~~ad~~v  248 (287)
                      +.||++|
T Consensus       164 ~~ad~~~  170 (172)
T PRK06547        164 DVADWLG  170 (172)
T ss_pred             hccEEEe
Confidence            6677776

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.27  E-value=3.7e-12  Score=122.06  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=53.9

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLL~~iaGl~~p---~~G~I   60 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHE---GEFVVFVGPSGCGKSTLLRMIAGLEDI---TSGDL   60 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEE
Confidence            58999999999988899999999999   999999999999999999999999988   56654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.27  E-value=3.7e-12  Score=111.64  Aligned_cols=64  Identities=27%  Similarity=0.361  Sum_probs=55.8

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   64 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAA---GEALQVTGPNGSGKTTLLRILAGLSPP---LAGRVL---LNGGPL   64 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEec
Confidence            4789999999988999999999999   999999999999999999999999988   566554   345443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.27  E-value=3.2e-12  Score=111.82  Aligned_cols=62  Identities=21%  Similarity=0.350  Sum_probs=53.9

Q ss_pred             EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   62 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEK---GKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVY---LNGKET   62 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEE---ECCEEc
Confidence            47899999988899999999999   999999999999999999999999988   566554   355543

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.27  E-value=3.3e-12  Score=115.56  Aligned_cols=58  Identities=26%  Similarity=0.257  Sum_probs=52.8

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~   58 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAA---GEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQ   58 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            4689999999888899999999999   999999999999999999999999988   566543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.27  E-value=3.9e-12  Score=116.54  Aligned_cols=61  Identities=25%  Similarity=0.314  Sum_probs=54.5

Q ss_pred             CCccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           62 NAHDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        62 ~~~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +.++++++|+++.|+  +..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I   66 (271)
T PRK13632          4 KSVMIKVENVSFSYPNSENNALKNVSFEINE---GEYVAILGHNGSGKSTISKILTGLLKP---QSGEI   66 (271)
T ss_pred             cceEEEEEeEEEEcCCCCccceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceE
Confidence            345799999999995  56799999999999   999999999999999999999999987   56654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=5.1e-12  Score=116.14  Aligned_cols=57  Identities=16%  Similarity=0.139  Sum_probs=52.5

Q ss_pred             CCCccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           61 SNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        61 ~~~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+.++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus        16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~---Ge~~~IiG~nGsGKSTLl~~l~Gl~~~   72 (274)
T PRK14265         16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPA---KKIIAFIGPSGCGKSTLLRCFNRMNDL   72 (274)
T ss_pred             CCCceEEEeeEEEEeCCeEEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhccccc
Confidence            334589999999999988899999999999   999999999999999999999999864

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.27  E-value=4.5e-12  Score=115.35  Aligned_cols=54  Identities=17%  Similarity=0.202  Sum_probs=50.9

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ..+++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.
T Consensus        11 ~~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         11 PSKIQVRNLNFYYGKFHALKNINLDIAK---NQVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             CceEEEEEEEEEeCCeEEeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcccc
Confidence            3479999999999988899999999999   99999999999999999999999986

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.26  E-value=3.6e-12  Score=114.57  Aligned_cols=58  Identities=28%  Similarity=0.398  Sum_probs=52.5

Q ss_pred             EEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|++++|++ ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~   59 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAK---GEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIF   59 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE
Confidence            468999999987 7899999999999   999999999999999999999999987   566553

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.26  E-value=4.6e-11  Score=98.15  Aligned_cols=102  Identities=21%  Similarity=0.315  Sum_probs=62.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      +|+|+|++||||||+++.|+..++.+|++.|.+....... .....   .....++......+.++..... +|..|.+.
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~-~~~~~---~~~~~i~~~l~~~~~~~~~~~~-~Vidg~~~   75 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK-LASEV---AAIPEVRKALDERQRELAKKPG-IVLEGRDI   75 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH-HHHHh---cccHhHHHHHHHHHHHHhhCCC-EEEEeeee
Confidence            4899999999999999999999999999999553222200 00000   0112233333344455554443 33344321


Q ss_pred             EeccccHHhhc-CCcEEEEecCHHHHHHHHhhc
Q 023118          176 VVRPLNWRFMR-QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       176 v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                           .+..+. ..++|||++|++.+.+|+..+
T Consensus        76 -----~~~~~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          76 -----GTVVFPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             -----eeEEcCCCCEEEEEECCHHHHHHHHHHH
Confidence                 111122 258899999999999999863

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.26  E-value=5.3e-12  Score=114.58  Aligned_cols=59  Identities=17%  Similarity=0.194  Sum_probs=54.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .++++|+++.|+++.+++++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~   63 (257)
T PRK10619          5 KLNVIDLHKRYGEHEVLKGVSLQANA---GDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIV   63 (257)
T ss_pred             cEEEeeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE
Confidence            58999999999988999999999999   999999999999999999999999987   566553

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=8.7e-12  Score=122.23  Aligned_cols=86  Identities=20%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             ccccccCCCcCCCCCCCc--cEEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcc
Q 023118           47 HRTLNLVPAHVSKDSNAH--DVESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTF  122 (287)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~f  122 (287)
                      ......++.|.....+..  .++++|++++|++.  ++|+|+||++++   |++|+|+|++||||||++++|++.+.|  
T Consensus       316 i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~---GEkvAIlG~SGsGKSTllqLl~~~~~~--  390 (573)
T COG4987         316 ILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQ---GEKVAILGRSGSGKSTLLQLLAGAWDP--  390 (573)
T ss_pred             hccCCcccCCCccccCCccceeeeccceeecCCCccchhhccceeecC---CCeEEEECCCCCCHHHHHHHHHhccCC--
Confidence            333444555652223322  68999999999764  599999999999   999999999999999999999999999  


Q ss_pred             ccchhHHHHHhCCCchhhh
Q 023118          123 ADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus       123 id~d~~ie~~~~G~~i~~~  141 (287)
                       +.|.+-   .+|.++..+
T Consensus       391 -~~G~i~---~~g~~~~~l  405 (573)
T COG4987         391 -QQGSIT---LNGVEIASL  405 (573)
T ss_pred             -CCCeee---ECCcChhhC
Confidence             788776   578888766

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=5.9e-12  Score=113.79  Aligned_cols=53  Identities=21%  Similarity=0.119  Sum_probs=50.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (252)
T PRK14255          4 KIITSSDVHLFYGKFEALKGIDLDFNQ---NEITALIGPSGCGKSTYLRTLNRMND   56 (252)
T ss_pred             ceEEEEeEEEEECCeeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhcccc
Confidence            468999999999988899999999999   99999999999999999999999865

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.26  E-value=4.3e-12  Score=108.46  Aligned_cols=65  Identities=26%  Similarity=0.353  Sum_probs=55.8

Q ss_pred             EEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           66 VESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        66 l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++|+++.|++.  .+++++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++.
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~---G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~---~~g~~~~   67 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKP---GEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEIL---IDGVDLR   67 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEE---ECCEEhh
Confidence            4688999999865  799999999999   999999999999999999999999988   566554   4565543

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.26  E-value=5.2e-12  Score=115.51  Aligned_cols=54  Identities=20%  Similarity=0.148  Sum_probs=51.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++|++++|+++.+|+++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus        19 ~~l~~~nl~~~~~~~~il~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~   72 (267)
T PRK14237         19 IALSTKDLHVYYGKKEAIKGIDMQFEK---NKITALIGPSGSGKSTYLRSLNRMNDT   72 (267)
T ss_pred             eEEEEeeEEEEECCeeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCc
Confidence            479999999999988999999999999   999999999999999999999999864

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.26  E-value=4.4e-12  Score=115.97  Aligned_cols=59  Identities=22%  Similarity=0.305  Sum_probs=53.0

Q ss_pred             ccEEEcceEEEcCC---------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDG---------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~---------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|++++|+.         ..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i   70 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLRE---GQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEL   70 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecC---CCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEE
Confidence            36899999999962         4699999999999   999999999999999999999999988   56654

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.26  E-value=4.7e-12  Score=113.94  Aligned_cols=65  Identities=22%  Similarity=0.301  Sum_probs=55.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+  .+   ++|.+.   ++|.++
T Consensus         1 ~i~~~nl~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~---~~g~~~   67 (248)
T PRK09580          1 MLSIKDLHVSVEDKAILRGLNLEVRP---GEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVE---FKGKDL   67 (248)
T ss_pred             CeEEEEEEEEeCCeeeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEE---ECCCcc
Confidence            47899999999988899999999999   9999999999999999999999995  35   566553   345443

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.25  E-value=4.9e-12  Score=120.57  Aligned_cols=59  Identities=27%  Similarity=0.325  Sum_probs=54.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         2 ~L~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~   60 (353)
T PRK10851          2 SIEIANIKKSFGRTQVLNDISLDIPS---GQMVALLGPSGSGKTTLLRIIAGLEHQ---TSGHIR   60 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence            48899999999988899999999999   999999999999999999999999988   566553

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.25  E-value=4.7e-12  Score=117.75  Aligned_cols=58  Identities=29%  Similarity=0.324  Sum_probs=54.1

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+ .+.+|+++||++++   |++++|+|||||||||++++|+|.+.|   ++|.+
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~---Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i   62 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEP---GEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEI   62 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCcCC---CceEE
Confidence            578999999999 69999999999999   999999999999999999999999999   56654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.25  E-value=5.3e-12  Score=115.60  Aligned_cols=59  Identities=17%  Similarity=0.236  Sum_probs=53.5

Q ss_pred             ccEEEcceEEEcC---------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLD---------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~---------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|+         ++.+|+|+||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i   69 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKS---GETVALLGRSGCGKSTLARLLVGLESP---SQGNV   69 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence            3689999999997         47899999999999   999999999999999999999999887   56654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.25  E-value=5.5e-12  Score=113.86  Aligned_cols=62  Identities=18%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~i  129 (287)
                      .++++|+++.|++..+++|+||++.+   |++++|+|+||||||||+++|+|.+.  |.+.++|.+.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~   66 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEE---NQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL   66 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence            48899999999888899999999999   99999999999999999999999875  3222455543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=5.5e-12  Score=113.79  Aligned_cols=68  Identities=16%  Similarity=0.093  Sum_probs=56.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+...++|.+.   ++|.++
T Consensus         2 ~~~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~---~~g~~i   69 (246)
T PRK14269          2 IAKTTNLNLFYGKKQALFDINMQIEQ---NKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE---IEGKDV   69 (246)
T ss_pred             ceeeeeeEEEECCEeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE---ECCEec
Confidence            57899999999988899999999999   999999999999999999999998753112566553   345444

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.25  E-value=4.7e-12  Score=120.24  Aligned_cols=58  Identities=17%  Similarity=0.144  Sum_probs=52.5

Q ss_pred             cEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ||+++|+++.|+    ...+|+|+||++.+   |++++|+||||||||||+++|++.+.|   ++|.+
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~---Gei~gIiG~sGaGKSTLlr~I~gl~~p---~~G~I   62 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPA---GQIYGVIGASGAGKSTLIRCVNLLERP---TSGSV   62 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence            489999999995    24799999999999   999999999999999999999999988   56655

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.25  E-value=4.5e-12  Score=109.20  Aligned_cols=64  Identities=22%  Similarity=0.361  Sum_probs=56.1

Q ss_pred             EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      +++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+   +.|.+.   ++|.++.
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~---G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~---~~g~~~~   64 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEA---GEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEIL---LDGKDLA   64 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEECC
Confidence            468999999888899999999999   999999999999999999999999988   677664   4566553

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.25  E-value=5.7e-12  Score=114.43  Aligned_cols=53  Identities=13%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++|++++|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~laGl~~~   56 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEP---RSVTAFIGPSGCGKSTVLRTLNRMHEV   56 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCc
Confidence            58999999999888899999999999   999999999999999999999999864

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=9e-12  Score=114.67  Aligned_cols=55  Identities=25%  Similarity=0.227  Sum_probs=52.3

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|
T Consensus        19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~p   73 (276)
T PRK14271         19 APAMAAVNLTLGFAGKTVLDQVSMGFPA---RAVTSLMGPTGSGKTTFLRTLNRMNDK   73 (276)
T ss_pred             CcEEEEeeEEEEECCEEEeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCc
Confidence            4579999999999988999999999999   999999999999999999999999875

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.25  E-value=7.2e-12  Score=113.86  Aligned_cols=59  Identities=22%  Similarity=0.261  Sum_probs=54.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~---Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i   61 (251)
T PRK09544          3 SLVSLENVSVSFGQRRVLSDVSLELKP---GKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVI   61 (251)
T ss_pred             cEEEEeceEEEECCceEEEeEEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            368999999999988899999999999   999999999999999999999999887   55644

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=6.3e-12  Score=114.30  Aligned_cols=54  Identities=11%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus         6 ~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLlk~l~Gl~~~   59 (259)
T PRK14260          6 PAIKVKDLSFYYNTSKAIEGISMDIYR---NKVTAIIGPSGCGKSTFIKTLNRISEL   59 (259)
T ss_pred             ceEEEEEEEEEECCeEeecceEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            468999999999988899999999999   999999999999999999999999875

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.25  E-value=5.5e-12  Score=115.64  Aligned_cols=59  Identities=25%  Similarity=0.274  Sum_probs=53.6

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|+ ++.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~   65 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPG---GSIAALVGVNGSGKSTLFKALMGFVRL---ASGKIS   65 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            589999999995 57899999999999   999999999999999999999999987   566553

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=6.1e-12  Score=113.57  Aligned_cols=53  Identities=23%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~   55 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFK---NQITAIIGPSGCGKTTLLRSINRMNDH   55 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecC---CCEEEEECCCCCCHHHHHHHHhccccC
Confidence            68999999999888899999999999   999999999999999999999998874

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=6.5e-12  Score=114.67  Aligned_cols=63  Identities=16%  Similarity=0.143  Sum_probs=54.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC--ccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY--TFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~--~fid~d~~i  129 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+++  .+.++|.+.
T Consensus         9 ~~l~i~~v~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   73 (264)
T PRK14243          9 TVLRTENLNVYYGSFLAVKNVWLDIPK---NQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT   73 (264)
T ss_pred             eEEEEeeeEEEECCEEEeecceEEEcC---CCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE
Confidence            369999999999988899999999999   999999999999999999999998763  222556553

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=6.6e-12  Score=114.10  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=51.6

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus        10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~   64 (258)
T PRK14268         10 QPQIKVENLNLWYGEKQALKNVSMQIPK---NSVTALIGPSGCGKSTFIRCLNRMNDL   64 (258)
T ss_pred             ceeEEEeeeEEEeCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence            3579999999999988899999999999   999999999999999999999999875

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.24  E-value=5.7e-12  Score=114.30  Aligned_cols=57  Identities=25%  Similarity=0.297  Sum_probs=52.5

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   +.|.+
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i   58 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPP---GSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTV   58 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEE
Confidence            5789999999988999999999999   999999999999999999999999987   45544

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.24  E-value=5.8e-12  Score=108.25  Aligned_cols=64  Identities=25%  Similarity=0.354  Sum_probs=55.2

Q ss_pred             EEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++.  .+++++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~---~~g~~~   66 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQ---GEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEIT---LDGVPV   66 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEE---ECCEEH
Confidence            4688999999764  799999999999   999999999999999999999999888   566654   456544

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.24  E-value=6.9e-12  Score=114.14  Aligned_cols=55  Identities=22%  Similarity=0.280  Sum_probs=52.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|.
T Consensus         3 ~~l~~~nl~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~p~   57 (262)
T PRK09984          3 TIIRVEKLAKTFNQHQALHAVDLNIHH---GEMVALLGPSGSGKSTLLRHLSGLITGD   57 (262)
T ss_pred             cEEEEeeEEEEeCCeEEEecceEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            379999999999988999999999999   9999999999999999999999999873

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.24  E-value=7.3e-12  Score=109.16  Aligned_cols=64  Identities=11%  Similarity=0.173  Sum_probs=54.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|++++|+++.+++ +||++++   |++++|+|+||||||||+++|+|.+.+   +.|.+.   ++|.++
T Consensus         1 ~l~~~~l~~~~~~~~l~~-vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~i   64 (195)
T PRK13541          1 MLSLHQLQFNIEQKNLFD-LSITFLP---SAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIY---YKNCNI   64 (195)
T ss_pred             CeEEEEeeEEECCcEEEE-EEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCccc
Confidence            478999999998766665 9999999   999999999999999999999999988   566554   456554

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.24  E-value=6.4e-12  Score=111.75  Aligned_cols=65  Identities=26%  Similarity=0.341  Sum_probs=56.0

Q ss_pred             EEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           66 VESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        66 l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++|+++.|++ ..+++++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++.
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~~   68 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKP---GETVAIVGPTGAGKTTLINLLMRFYDP---QKGQIL---IDGIDIR   68 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEE---ECCEeHH
Confidence            789999999974 5799999999999   999999999999999999999999988   566654   3555443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=6.5e-12  Score=111.96  Aligned_cols=71  Identities=21%  Similarity=0.344  Sum_probs=62.4

Q ss_pred             ccEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           64 HDVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .+|+++|+....+++ .||+++|++|++   |+..+|+||||||||||+..|+|.-+|....++.++    +|.+|.++
T Consensus         2 ~~L~I~dLhv~v~~~keILkgvnL~v~~---GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~----~GedI~~l   73 (251)
T COG0396           2 MMLEIKDLHVEVEGKKEILKGVNLTVKE---GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF----DGEDILEL   73 (251)
T ss_pred             ceeEEeeeEEEecCchhhhcCcceeEcC---CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEE----CCcccccC
Confidence            479999999999985 999999999999   999999999999999999999999988766665555    67777664

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=7e-12  Score=113.23  Aligned_cols=52  Identities=19%  Similarity=0.131  Sum_probs=50.0

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +++++|++++|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251          4 IISAKDVHLSYGNYEALHGISLDFEE---KELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhhccc
Confidence            58999999999988899999999999   99999999999999999999999986

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.24  E-value=1.9e-11  Score=105.56  Aligned_cols=154  Identities=18%  Similarity=0.237  Sum_probs=88.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      |..++|+|++||||||+++.|++.+.     ..++++|.+-..+..+....   .......++.. ..+.+.+......|
T Consensus        18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~G~~V   93 (184)
T TIGR00455        18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFS---EEDRKENIRRI-GEVAKLFVRNGIIV   93 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCC---HHHHHHHHHHH-HHHHHHHHcCCCEE
Confidence            89999999999999999999999872     35678887654332211111   01111222211 12233333333444


Q ss_pred             EecCCceEeccccHHhhc----C--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118          169 VATGGGAVVRPLNWRFMR----Q--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA  242 (287)
Q Consensus       169 ia~ggG~v~~~~~~~~L~----~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~  242 (287)
                      |...-  -.....+..++    .  -++|||++|++.+.+|      ..+|++.....       +.+..+...+.++|.
T Consensus        94 I~d~~--~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R------~~~~l~~~~~~-------~~~~~l~~~~~~y~~  158 (184)
T TIGR00455        94 ITSFI--SPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR------DPKGLYKKARN-------GEIKGFTGIDSPYEA  158 (184)
T ss_pred             EEecC--CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh------CchhHHHHHhc-------CCccCcccccCCCCC
Confidence            44321  11112222222    2  2569999999999999      12565532111       123334445666664


Q ss_pred             -h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          243 -N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       243 -~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                       . +|++|            ||++.++++++++|++.+
T Consensus       159 p~~adl~I------------dt~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       159 PENPEVVL------------DTDQNDREECVGQIIEKL  184 (184)
T ss_pred             CCCCcEEE------------ECCCCCHHHHHHHHHHhC
Confidence             3 77765            888999999999998753

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=7.5e-12  Score=113.17  Aligned_cols=52  Identities=17%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .++++|++++|++..+|+|+||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPE---NSVTAIIGPSGCGKSTVLRSINRMHD   55 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            48999999999888899999999999   99999999999999999999999985

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=8.4e-12  Score=112.66  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=49.8

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++++|+++.|++..+++++||++.+   |++++|+||||||||||+++|+|.+.
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (252)
T PRK14239          4 PILQVSDLSVYYNKKKALNSVSLDFYP---NEITALIGPSGSGKSTLLRSINRMND   56 (252)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhcccc
Confidence            368999999999988899999999999   99999999999999999999999853

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=6.5e-12  Score=115.43  Aligned_cols=58  Identities=22%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+ +..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   +.|.+
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   59 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKK---GEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKV   59 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceE
Confidence            478999999995 56799999999999   999999999999999999999999887   45543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.23  E-value=7.1e-12  Score=111.27  Aligned_cols=57  Identities=18%  Similarity=0.244  Sum_probs=52.2

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   +.|.+
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i   57 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPK---NSVYGLLGPNGAGKSTLLKMITGILRP---TSGEI   57 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            4689999999988899999999999   999999999999999999999999887   56644

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.23  E-value=8.4e-12  Score=114.45  Aligned_cols=53  Identities=15%  Similarity=0.184  Sum_probs=50.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus        23 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         23 VVFDTQNLNLWYGEDHALKNINLDIHE---NEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             eEEEEeeeEEEECCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            479999999999888899999999999   99999999999999999999999986

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.23  E-value=1.2e-11  Score=110.01  Aligned_cols=68  Identities=21%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             CccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           63 AHDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ..+++++|+++.|++   ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.
T Consensus         9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~~   79 (226)
T cd03248           9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHP---GEVTALVGPSGSGKSTVVALLENFYQP---QGGQVL---LDGKPIS   79 (226)
T ss_pred             CceEEEEEEEEEeCCCCCCccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEE---ECCCchH
Confidence            357999999999974   4699999999999   999999999999999999999999988   566654   4565543

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=7e-12  Score=115.23  Aligned_cols=58  Identities=21%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+ ...+|+|+||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   62 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPE---GSKTALLGPNGAGKSTLLLHLNGIYLP---QRGRV   62 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CceEE
Confidence            689999999996 56799999999999   999999999999999999999999987   45544

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.23  E-value=8e-12  Score=112.80  Aligned_cols=59  Identities=19%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~i  129 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|..  .+   +.|.+.
T Consensus         7 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~   67 (252)
T CHL00131          7 ILEIKNLHASVNENEILKGLNLSINK---GEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDIL   67 (252)
T ss_pred             eEEEEeEEEEeCCEEeeecceeEEcC---CcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEE
Confidence            69999999999888899999999999   9999999999999999999999973  44   566553

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=9e-12  Score=112.43  Aligned_cols=62  Identities=21%  Similarity=0.278  Sum_probs=53.9

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~i  129 (287)
                      +++++|+++.|+++.+++++||++.+   |++++|+|+||||||||+++|+|.++  +.+.++|.+.
T Consensus         3 ~l~~~~v~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~   66 (250)
T PRK14266          3 RIEVENLNTYFDDAHILKNVNLDIPK---NSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY   66 (250)
T ss_pred             EEEEEeEEEEeCCeEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE
Confidence            58899999999988899999999999   99999999999999999999999875  3223566543

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.23  E-value=1.2e-11  Score=109.77  Aligned_cols=59  Identities=25%  Similarity=0.296  Sum_probs=52.4

Q ss_pred             cEEEcceEEEcCC-------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDG-------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~-------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|+.       ..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~   66 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNA---GECVALSGPSGAGKSTLLKSLYANYLP---DSGRIL   66 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEE
Confidence            4789999999962       4799999999999   999999999999999999999999988   556543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.23  E-value=7e-12  Score=107.38  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=55.6

Q ss_pred             EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++|++++|++  ..+++++||++.+   |+.++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~---~~g~~~~   67 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEP---GESLAIIGPSGSGKSTLARLILGLLRP---TSGRVR---LDGADIS   67 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEE---ECCEEcc
Confidence            468999999975  5699999999999   999999999999999999999999988   566654   4565543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.23  E-value=9.6e-12  Score=110.30  Aligned_cols=66  Identities=20%  Similarity=0.225  Sum_probs=56.9

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      +++++|+++.|+.    ..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.   ++|.++.
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~---G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~---~~g~~~~   70 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINP---GEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLK---VLGQELY   70 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEhH
Confidence            3789999999974    6799999999999   999999999999999999999999887   566654   4566553

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=8.5e-12  Score=117.77  Aligned_cols=63  Identities=14%  Similarity=0.167  Sum_probs=53.6

Q ss_pred             ccEEEcceEEEc----CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcc-ccchhHH
Q 023118           64 HDVESGTFCDSL----DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTF-ADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~----~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~f-id~d~~i  129 (287)
                      ++|+++|+++.|    +...+|+++||+|.+   |++++|+|+||||||||+++|+|.+.++. .++|.+.
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~---Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~   69 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTE---GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR   69 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE
Confidence            368999999999    456799999999999   99999999999999999999999986421 2555543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=1.5e-11  Score=111.35  Aligned_cols=54  Identities=19%  Similarity=0.124  Sum_probs=51.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   59 (254)
T PRK14273          6 AIIETENLNLFYTDFKALNNINIKILK---NSITALIGPSGCGKSTFLRTLNRMNDL   59 (254)
T ss_pred             ceEEEeeeEEEeCCceeecceeeEEcC---CCEEEEECCCCCCHHHHHHHHhccccC
Confidence            479999999999888899999999999   999999999999999999999999876

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=9.2e-12  Score=112.47  Aligned_cols=53  Identities=17%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|..+
T Consensus         2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14245          2 VKIDARDVNFWYGDFHALKGISMEIEE---KSVVAFIGPSGCGKSTFLRLFNRMND   54 (250)
T ss_pred             cEEEEEEEEEEECCEeEEeeeeEEEeC---CCEEEEECCCCCCHHHHHHHHhhhhc
Confidence            468999999999988899999999999   99999999999999999999999743

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.22  E-value=7.1e-12  Score=110.07  Aligned_cols=69  Identities=16%  Similarity=0.158  Sum_probs=56.6

Q ss_pred             ccEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +.+.++|++|.|.    +..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+...++|.+.   ++|.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~---i~g~~~   74 (202)
T cd03233           2 STLSWRNISFTTGKGRSKIPILKDFSGVVKP---GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH---YNGIPY   74 (202)
T ss_pred             ceEEEEccEEEeccCCCCceeeeeEEEEECC---CcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE---ECCEEC
Confidence            4578999999994    56799999999999   999999999999999999999999883112566554   355544

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.22  E-value=8.3e-12  Score=109.39  Aligned_cols=65  Identities=23%  Similarity=0.363  Sum_probs=55.3

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCCchh
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+  .|   +.|.+.   ++|.++.
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~---~~g~~~~   67 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKK---GEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEIL---FKGEDIT   67 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECC---CcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEE---ECCEECC
Confidence            4689999999888899999999999   9999999999999999999999995  45   566554   3565543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=8.2e-12  Score=114.85  Aligned_cols=59  Identities=22%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|++++|+ ...+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i   61 (277)
T PRK13652          2 HLIETRDLCYSYSGSKEALNNINFIAPR---NSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSV   61 (277)
T ss_pred             ceEEEEEEEEEeCCCCceeeEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence            3589999999995 56799999999999   999999999999999999999999988   56654

>PRK08356 hypothetical protein; Provisional

Probab=99.22  E-value=4.4e-10  Score=98.18  Aligned_cols=159  Identities=15%  Similarity=0.213  Sum_probs=92.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCC--------------chhhhhhhhchhhhhh---hH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGT--------------SVAQIFKESGEAYFRE---YE  154 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~--------------~i~~~~~~~g~~~fr~---~e  154 (287)
                      ...|+|+||+||||||+++.|.. .+...+..++.+....  .+.              +..++. +.|. ..+.   .+
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-e~g~-~~~~~yG~~   81 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLI-ELGR-YLKEKYGED   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHH-HHHH-HHHHhcCcH
Confidence            45789999999999999999975 7888888886431110  010              001110 0010 0110   11


Q ss_pred             ---HHHHHHhhcCCCeEEecCCceEeccccHHhhcC--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHH
Q 023118          155 ---SKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTA  229 (287)
Q Consensus       155 ---~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~  229 (287)
                         ..+++.+.... .++-.|-   .+..+++.|.+  +.+|||++|++.+.+|+..|+...+|+...         .+.
T Consensus        82 ~~~~~~~~~~~~~~-~ividG~---r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~---------~e~  148 (195)
T PRK08356         82 ILIRLAVDKKRNCK-NIAIDGV---RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKS---------FED  148 (195)
T ss_pred             HHHHHHHHHhccCC-eEEEcCc---CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCcccccccc---------HHH
Confidence               11223332112 3444432   33344444543  689999999999999998876544444321         244


Q ss_pred             HHHHHHHHHhhhh-----h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          230 LSALSKERSEAYA-----N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       230 l~~l~~~R~~~Y~-----~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      +.+++..+..+|.     + ||++|            ++ +.++++++.+|...+..+
T Consensus       149 ~~~~~~~~~~l~~~~~~~~~aD~vI------------~N-~~~~e~~~~~i~~~~~~~  193 (195)
T PRK08356        149 FLKFDEWEEKLYHTTKLKDKADFVI------------VN-EGTLEELRKKVEEILREL  193 (195)
T ss_pred             HHHHHHHHHHhhhhhhHHHhCcEEE------------EC-CCCHHHHHHHHHHHHHHh
Confidence            5566555554443     3 78876            23 358999999999888765

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=9.1e-12  Score=123.63  Aligned_cols=54  Identities=24%  Similarity=0.298  Sum_probs=51.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|++++|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+
T Consensus         4 ~~l~~~nl~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~   57 (506)
T PRK13549          4 YLLEMKNITKTFGGVKALDNVSLKVRA---GEIVSLCGENGAGKSTLMKVLSGVYPH   57 (506)
T ss_pred             ceEEEeeeEEEeCCeEeecceeEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            479999999999988899999999999   999999999999999999999999876

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=1.3e-11  Score=118.69  Aligned_cols=59  Identities=20%  Similarity=0.297  Sum_probs=54.5

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|||.+.+   +.|.+
T Consensus        18 ~~l~l~~v~~~~~~~~~l~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I   76 (377)
T PRK11607         18 PLLEIRNLTKSFDGQHAVDDVSLTIYK---GEIFALLGASGCGKSTLLRMLAGFEQP---TAGQI   76 (377)
T ss_pred             ceEEEEeEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEE
Confidence            469999999999988899999999999   999999999999999999999999988   56654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.22  E-value=9.8e-12  Score=109.93  Aligned_cols=64  Identities=22%  Similarity=0.306  Sum_probs=55.4

Q ss_pred             EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++  ..+++++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~---G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~   68 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRA---GEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVL---LDGTDI   68 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCeEE---ECCEEh
Confidence            789999999975  5799999999999   999999999999999999999999887   566654   355544

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=8.2e-12  Score=114.26  Aligned_cols=60  Identities=20%  Similarity=0.247  Sum_probs=53.5

Q ss_pred             ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++.|++  ..+|+++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.
T Consensus         6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~---Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~   67 (269)
T PRK13648          6 SIIVFKNVSFQYQSDASFTLKDVSFNIPK---GQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIF   67 (269)
T ss_pred             ceEEEEEEEEEcCCCCCcceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE
Confidence            46999999999975  4599999999999   999999999999999999999999987   566553

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=8.9e-12  Score=114.52  Aligned_cols=58  Identities=24%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+ ...+++++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i   59 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEK---GEMVALLGPNGAGKSTLFLHFNGILKP---TSGEV   59 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEE
Confidence            478999999996 46799999999999   999999999999999999999999887   45544

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.22  E-value=1e-11  Score=123.48  Aligned_cols=59  Identities=22%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+
T Consensus        10 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~Gl~~p---~~G~i   68 (510)
T PRK15439         10 PLLCARSISKQYSGVEVLKGIDFTLHA---GEVHALLGGNGAGKSTLMKIIAGIVPP---DSGTL   68 (510)
T ss_pred             ceEEEEeEEEEeCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            479999999999988899999999999   999999999999999999999999987   56654

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.22  E-value=8.2e-12  Score=111.41  Aligned_cols=64  Identities=28%  Similarity=0.426  Sum_probs=55.0

Q ss_pred             EEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++.  .+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~   66 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPA---GETVALVGPSGSGKSTLVNLIPRFYDV---DSGRIL---IDGHDV   66 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhccccC---CCCEEE---ECCEEh
Confidence            4689999999765  799999999999   999999999999999999999999988   566654   345444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.22  E-value=9.4e-12  Score=123.89  Aligned_cols=68  Identities=24%  Similarity=0.337  Sum_probs=59.6

Q ss_pred             cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||+++|++ ..+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~---G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~---i~g~~i~~~  402 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPP---GERVAILGPSGSGKSTLLMLLTGLLDP---LQGEVT---LDGVSVSSL  402 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEhhhH
Confidence            4899999999975 5699999999999   999999999999999999999999999   577665   477776544

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.22  E-value=9.2e-12  Score=123.64  Aligned_cols=59  Identities=22%  Similarity=0.230  Sum_probs=54.7

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|+++.+++|+||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~i   62 (510)
T PRK09700          4 PYISMAGIGKSFGPVHALKSVNLTVYP---GEIHALLGENGAGKSTLMKVLSGIHEP---TKGTI   62 (510)
T ss_pred             ceEEEeeeEEEcCCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCcCC---CccEE
Confidence            469999999999988899999999999   999999999999999999999999987   56655

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=1.1e-11  Score=126.49  Aligned_cols=58  Identities=24%  Similarity=0.298  Sum_probs=53.9

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +|.++|++++|+++.+|+++||+|.+   |++++|+||||||||||+++|+|.+.|   |+|.+
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~---Ge~v~LvG~NGsGKSTLLkiL~G~~~p---d~G~I   58 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINP---GQKVGLVGKNGCGKSTLLALLKNEISA---DGGSY   58 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence            47899999999999999999999999   999999999999999999999999887   56654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=1.2e-11  Score=111.82  Aligned_cols=54  Identities=22%  Similarity=0.162  Sum_probs=50.9

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~   56 (251)
T PRK14270          3 IKMESKNLNLWYGEKQALNDINLPIYE---NKITALIGPSGCGKSTFLRCLNRMNDL   56 (251)
T ss_pred             cEEEEEEeEEEECCeeeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCc
Confidence            578999999999888899999999999   999999999999999999999998764

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.4e-11  Score=113.07  Aligned_cols=55  Identities=16%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus        23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~---Ge~~~I~G~nGsGKSTLl~~laGl~~~   77 (272)
T PRK14236         23 QTALEVRNLNLFYGDKQALFDISMRIPK---NRVTAFIGPSGCGKSTLLRCFNRMNDL   77 (272)
T ss_pred             CcEEEEEEEEEEECCeeEeeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            3479999999999888899999999999   999999999999999999999999764

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=8.9e-12  Score=115.30  Aligned_cols=58  Identities=26%  Similarity=0.292  Sum_probs=51.8

Q ss_pred             cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++++|+++.|+.     +.+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGaGKSTLl~~l~Gl~~p---~~G~i   64 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIED---GEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKI   64 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CccEE
Confidence            3889999999974     4699999999999   999999999999999999999999987   45544

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.2e-11  Score=114.30  Aligned_cols=54  Identities=17%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+
T Consensus        38 ~~l~i~~l~~~~~~~~il~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~   91 (285)
T PRK14254         38 TVIEARDLNVFYGDEQALDDVSMDIPE---NQVTAMIGPSGCGKSTFLRCINRMNDL   91 (285)
T ss_pred             ceEEEEEEEEEECCEeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCc
Confidence            479999999999888899999999999   999999999999999999999999873

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.21  E-value=9.5e-12  Score=108.60  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=55.8

Q ss_pred             cEEEcceEEEcCC------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCC
Q 023118           65 DVESGTFCDSLDG------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGT  136 (287)
Q Consensus        65 ~l~~~~l~~~~~~------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~  136 (287)
                      .++++|+++.|+.      ..+++++||++.+   |++++|+||||||||||+++|+|.+  .+   ++|.+.   ++|.
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~---Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~---~~g~   73 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKP---GELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVL---INGR   73 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEE---ECCE
Confidence            4789999999975      6799999999999   9999999999999999999999999  77   566554   3555


Q ss_pred             ch
Q 023118          137 SV  138 (287)
Q Consensus       137 ~i  138 (287)
                      ++
T Consensus        74 ~~   75 (194)
T cd03213          74 PL   75 (194)
T ss_pred             eC
Confidence            44

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1e-11  Score=114.60  Aligned_cols=58  Identities=21%  Similarity=0.264  Sum_probs=52.9

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+ ++.+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i   63 (283)
T PRK13636          5 ILKVEELNYNYSDGTHALKGININIKK---GEVTAILGGNGAGKSTLFQNLNGILKP---SSGRI   63 (283)
T ss_pred             eEEEEeEEEEeCCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CccEE
Confidence            699999999996 57899999999999   999999999999999999999999987   45543

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.21  E-value=9.9e-12  Score=123.20  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=54.5

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|++++|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p---~~G~i   61 (501)
T PRK10762          3 ALLQLKGIDKAFPGVKALSGAALNVYP---GRVMALVGENGAGKSTMMKVLTGIYTR---DAGSI   61 (501)
T ss_pred             ceEEEeeeEEEeCCeEEeeeeeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence            369999999999988899999999999   999999999999999999999999988   56654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=9.9e-12  Score=114.95  Aligned_cols=58  Identities=24%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+.     ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~iiG~NGaGKSTLl~~l~Gl~~p---~~G~i   64 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEE---GSFVALVGHTGSGKSTLMQHFNALLKP---SSGTI   64 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEE
Confidence            4789999999973     4699999999999   999999999999999999999999988   55543

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.21  E-value=1.2e-11  Score=116.75  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CccEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           63 AHDVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        63 ~~~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      .++++++|+++.|+    ...+|+++||++.+   |++++|+|+||||||||+++|+|.+.+..+.+|.+.   ++|.++
T Consensus        10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~---~~G~~i   83 (330)
T PRK09473         10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRA---GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT---FNGREI   83 (330)
T ss_pred             CceEEEeCeEEEEecCCCCEEEEeeeEEEEcC---CCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE---ECCEEC
Confidence            35799999999994    36799999999999   999999999999999999999999987433366553   345444

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.21  E-value=1.1e-11  Score=107.08  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++++|+++.|    +++++||++++   |++++|+|+||||||||+++|+|.+.+   ++|.+.   ++|.++.
T Consensus         3 ~~l~~~~l~~~~----~l~~vs~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~~   65 (182)
T cd03215           3 PVLEVRGLSVKG----AVRDVSFEVRA---GEIVGIAGLVGNGQTELAEALFGLRPP---ASGEIT---LDGKPVT   65 (182)
T ss_pred             cEEEEeccEEEe----eecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEECC
Confidence            368999999998    89999999999   999999999999999999999999988   567654   4565543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1e-11  Score=114.23  Aligned_cols=57  Identities=16%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             EEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++|+++.|++     ..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i   64 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIED---GSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSV   64 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            789999999974     3699999999999   999999999999999999999999887   55554

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=9.9e-12  Score=114.57  Aligned_cols=59  Identities=22%  Similarity=0.283  Sum_probs=53.1

Q ss_pred             ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|+.  +.+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGaGKSTLl~~i~G~~~p---~~G~i   64 (279)
T PRK13635          4 EIIRVEHISFRYPDAATYALKDVSFSVYE---GEWVAIVGHNGSGKSTLAKLLNGLLLP---EAGTI   64 (279)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEE
Confidence            36999999999964  5699999999999   999999999999999999999999988   45544

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.21  E-value=1.5e-11  Score=102.69  Aligned_cols=58  Identities=28%  Similarity=0.421  Sum_probs=52.3

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|+++.|++..+++++||++++   |++++|+|+||||||||+++|+|.+.+   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~   58 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINP---GDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVT   58 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEE
Confidence            4688999999877899999999999   999999999999999999999999988   565543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1.1e-11  Score=116.94  Aligned_cols=53  Identities=19%  Similarity=0.256  Sum_probs=49.7

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|+++|+++.|+.    ..+|+|+||++.+   |++++|+|+||||||||+++|+|++.+
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~lvG~sGsGKSTL~~~l~Gll~~   59 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQ---GEVVGIVGESGSGKSVSSLAIMGLIDY   59 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence            6899999999975    5799999999999   999999999999999999999999874

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1.2e-11  Score=116.66  Aligned_cols=60  Identities=17%  Similarity=0.142  Sum_probs=53.4

Q ss_pred             ccEEEcceEEEcC----------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLD----------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~----------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++|+++|+++.|+          ...+|+++||+|.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~   73 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLER---GKTLAVVGESGCGKSTLARLLTMIETP---TGGELY   73 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECC---CCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEE
Confidence            5799999999995          25799999999999   999999999999999999999999987   466553

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.21  E-value=1.4e-11  Score=107.25  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=52.2

Q ss_pred             ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC-ccccchhHH
Q 023118           64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY-TFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~-~fid~d~~i  129 (287)
                      +.++++|+++.|+.    +.+++++||++.+   |++++|+||||||||||+++|+|.+.+ +  +.|.+.
T Consensus         2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--~~G~i~   67 (192)
T cd03232           2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKP---GTLTALMGESGAGKTTLLDVLAGRKTAGV--ITGEIL   67 (192)
T ss_pred             cEEEEeeeEEEecCCCCceEeEEccEEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCcCCC--cceEEE
Confidence            46899999999974    6799999999999   999999999999999999999997531 2  556543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1e-11  Score=114.97  Aligned_cols=58  Identities=24%  Similarity=0.210  Sum_probs=51.9

Q ss_pred             cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |++++|+++.|+.     +.+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~---Ge~v~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   63 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKK---GSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKV   63 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcC---CCEEEEECCCCChHHHHHHHHhcCCCC---CCcEE
Confidence            4889999999963     2599999999999   999999999999999999999999988   56644

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.21  E-value=1.1e-11  Score=110.77  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +.++|++++|+++.+++++||++.+   |++++|+|+||||||||+++|+|.+.+   +.|.+
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~g~~~~---~~G~i   57 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKE---GEFFTLLGPSGCGKTTLLRLIAGFETP---TSGEI   57 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence            4689999999988999999999999   999999999999999999999999988   55644

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.21  E-value=1.2e-11  Score=118.38  Aligned_cols=52  Identities=21%  Similarity=0.303  Sum_probs=50.5

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|
T Consensus         6 l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p   57 (362)
T TIGR03258         6 IRIDHLRVAYGANTVLDDLSLEIEA---GELLALIGKSGCGKTTLLRAIAGFVKA   57 (362)
T ss_pred             EEEEEEEEEECCeEEEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            7899999999988899999999999   999999999999999999999999988

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.20  E-value=2.4e-11  Score=109.27  Aligned_cols=55  Identities=25%  Similarity=0.281  Sum_probs=53.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      ++|+++|++..|+++.+|+|+|++|++   |++.+|+||||||||||++++++.+.|.
T Consensus        30 ~li~l~~v~v~r~gk~iL~~isW~V~~---ge~W~I~G~NGsGKTTLL~ll~~~~~ps   84 (257)
T COG1119          30 PLIELKNVSVRRNGKKILGDLSWQVNP---GEHWAIVGPNGAGKTTLLSLLTGEHPPS   84 (257)
T ss_pred             ceEEecceEEEECCEeeccccceeecC---CCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence            579999999999999999999999999   9999999999999999999999999884

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.20  E-value=1.7e-11  Score=121.18  Aligned_cols=58  Identities=21%  Similarity=0.226  Sum_probs=53.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~l~G~~~p---~~G~i   60 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNA---GDSWAFVGANGSGKSALARALAGELPL---LSGER   60 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCceE
Confidence            69999999999888899999999999   999999999999999999999999987   55554

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=2.2e-11  Score=109.82  Aligned_cols=54  Identities=20%  Similarity=0.175  Sum_probs=51.0

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|+++.+|+++||++.+   |++++|+||||||||||+++|+|.+.+
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   55 (249)
T PRK14253          2 NKFNIENLDLFYGENQALKSINLPIPA---RQVTALIGPSGCGKSTLLRCLNRMNDL   55 (249)
T ss_pred             CeEEEeccEEEECCeeeeecceEEecC---CCEEEEECCCCCCHHHHHHHHHhhccc
Confidence            368999999999988899999999999   999999999999999999999998875

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.20  E-value=2.5e-11  Score=110.69  Aligned_cols=69  Identities=19%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             ccEEEcceEEEcCC---------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC
Q 023118           64 HDVESGTFCDSLDG---------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG  134 (287)
Q Consensus        64 ~~l~~~~l~~~~~~---------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~  134 (287)
                      ++++++|+++.|..         ..+++++||++.+   |+.++|||.|||||||++|+|.+++.|   .+|.++   +.
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~---ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~---f~   73 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKE---GETLGLVGESGCGKSTLGRLILGLEEP---TSGEIL---FE   73 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcC---CCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEE---Ec
Confidence            47899999999842         4799999999999   999999999999999999999999999   566665   46


Q ss_pred             CCchhhh
Q 023118          135 GTSVAQI  141 (287)
Q Consensus       135 G~~i~~~  141 (287)
                      |.++..+
T Consensus        74 g~~i~~~   80 (268)
T COG4608          74 GKDITKL   80 (268)
T ss_pred             Ccchhhc
Confidence            7665443

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.20  E-value=1.2e-11  Score=110.68  Aligned_cols=64  Identities=16%  Similarity=0.253  Sum_probs=54.7

Q ss_pred             EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|+.  ..+++++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~   66 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKP---GEVVGIVGRSGSGKSTLTKLIQRFYVP---ENGRVL---VDGHDL   66 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEE---ECCeeh
Confidence            468999999963  5799999999999   999999999999999999999999988   566654   355544

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.2e-11  Score=114.46  Aligned_cols=58  Identities=16%  Similarity=0.208  Sum_probs=52.0

Q ss_pred             cEEEcceEEEcCCe-----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGK-----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~-----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++++|+++.|++.     .+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i   68 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKK---NKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQT   68 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceE
Confidence            58999999999754     499999999999   999999999999999999999999987   45544

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.20  E-value=1.8e-11  Score=104.31  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=51.7

Q ss_pred             EEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++|+++.|+ ++.+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~   59 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKP---GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIG   59 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE
Confidence            46889999995 46799999999999   999999999999999999999999988   566553

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.20  E-value=1.3e-11  Score=126.75  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=58.8

Q ss_pred             cEEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|+..  .+|+|+|+++++   |+.|+|+|+||||||||+|+|.|.+.|   ..|.+.   .+|.++.++
T Consensus       471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~---Ge~vaIvG~SGsGKSTL~KLL~gly~p---~~G~I~---~dg~dl~~i  540 (709)
T COG2274         471 EIEFENVSFRYGPDDPPVLEDLSLEIPP---GEKVAIVGRSGSGKSTLLKLLLGLYKP---QQGRIL---LDGVDLNDI  540 (709)
T ss_pred             eEEEEEEEEEeCCCCcchhhceeEEeCC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEeHHhc
Confidence            59999999999744  699999999999   999999999999999999999999999   466654   366666554

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.3e-11  Score=113.72  Aligned_cols=59  Identities=24%  Similarity=0.322  Sum_probs=53.0

Q ss_pred             ccEEEcceEEEcCC------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDG------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|++++|++      +.+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i   67 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKK---GEFLVILGRNGSGKSTIAKHMNALLIP---SEGKV   67 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence            36999999999963      4699999999999   999999999999999999999999987   56644

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=2.5e-11  Score=109.57  Aligned_cols=53  Identities=23%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++|+++.|++..+++++||++.+   |++++|+|+||||||||+++|+|.+.|
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~   56 (252)
T PRK14272          4 LLSAQDVNIYYGDKQAVKNVNLDVQR---GTVNALIGPSGCGKTTFLRAINRMHDL   56 (252)
T ss_pred             EEEEeeeEEEECCEEeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            58899999999988999999999999   999999999999999999999999876

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.2e-11  Score=114.22  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++++|+++.|++     ..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~L~Gl~~p---~~G~i   64 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQ---GKYYAIVGQTGSGKSTLIQNINALLKP---TTGTV   64 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEE
Confidence            3789999999963     3699999999999   999999999999999999999999988   45544

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.20  E-value=4e-10  Score=96.66  Aligned_cols=155  Identities=17%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccc--cchhHHHHHhCCCchh--hhhhhhc------h----hhhhhhHHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA--DSDKYVEKLMGGTSVA--QIFKESG------E----AYFREYESKALQ  159 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi--d~d~~ie~~~~G~~i~--~~~~~~g------~----~~fr~~e~~~l~  159 (287)
                      |..|.|.|++||||||+++.|+..++..|+  +.|.++.... +....  +-+...+      +    ..+... ...+.
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~   79 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALP-LKCQDAEGGIEFDGDGGVSPGPEFRLLEGAW-YEAVA   79 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcC-hhhcccccccccCccCCcccchHHHHHHHHH-HHHHH
Confidence            789999999999999999999999877664  7777764321 11000  0000000      1    112211 12233


Q ss_pred             HhhcCCCeEEecCC-c-eEeccccHHhhcC--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118          160 KLSLVPQQVVATGG-G-AVVRPLNWRFMRQ--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK  235 (287)
Q Consensus       160 ~l~~~~~~via~gg-G-~v~~~~~~~~L~~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~  235 (287)
                      .+......||.... . .-.....+..+..  -..|||++|.+++.+|+..|+.. .|        .+      ....++
T Consensus        80 ~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~-~~--------~~------~~~~~~  144 (175)
T cd00227          80 AMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDR-VP--------GQ------ARKQAR  144 (175)
T ss_pred             HHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCc-cc--------hH------HHHHHH
Confidence            34333334444321 1 1111111222222  35799999999999999876522 11        01      001111


Q ss_pred             HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      .-.+ ....|+.            |||++.|++|++++|++.+
T Consensus       145 ~~~~-~~~~dl~------------iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         145 VVHA-GVEYDLE------------VDTTHKTPIECARAIAARV  174 (175)
T ss_pred             HhcC-CCcceEE------------EECCCCCHHHHHHHHHHhc
Confidence            1111 1123443            5999999999999999876

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.20  E-value=1.7e-11  Score=107.39  Aligned_cols=58  Identities=26%  Similarity=0.300  Sum_probs=51.8

Q ss_pred             EEEcceEEEcCCe-----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDGK-----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~-----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++||++.|+..     .+|+++||++++   |++++|+||||||||||+++|+|.+.+   ++|.+.
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~---G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~   63 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPK---GELVAIVGPVGSGKSSLLSALLGELEK---LSGSVS   63 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEE
Confidence            4689999999753     699999999999   999999999999999999999999887   566553

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.20  E-value=1.6e-11  Score=113.68  Aligned_cols=68  Identities=16%  Similarity=0.249  Sum_probs=59.6

Q ss_pred             cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      |+++++|+|.|..     ..+++|+||+|++   |++++|||.||+|||||+|++.++..|   ++|.++   .+|.++.
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~---GeI~GIIG~SGAGKSTLiR~iN~Le~P---tsG~v~---v~G~di~   71 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPK---GEIFGIIGYSGAGKSTLLRLINLLERP---TSGSVF---VDGQDLT   71 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcC---CcEEEEEcCCCCcHHHHHHHHhccCCC---CCceEE---EcCEecc
Confidence            5899999999975     5799999999999   999999999999999999999999999   677775   4676665


Q ss_pred             hh
Q 023118          140 QI  141 (287)
Q Consensus       140 ~~  141 (287)
                      .+
T Consensus        72 ~l   73 (339)
T COG1135          72 AL   73 (339)
T ss_pred             cC
Confidence            54

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.20  E-value=1.3e-11  Score=110.79  Aligned_cols=57  Identities=26%  Similarity=0.333  Sum_probs=51.8

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   +.|.+
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i   57 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPT---GSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRI   57 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence            4689999999988999999999999   999999999999999999999999877   45543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.4e-11  Score=113.47  Aligned_cols=58  Identities=24%  Similarity=0.347  Sum_probs=52.3

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+.   ..+|+|+||++.+   |++++|+|+||||||||+++|+|.+.|   +.|.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   64 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQ---GEWLSIIGHNGSGKSTTVRLIDGLLEA---ESGQI   64 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEE
Confidence            6899999999963   4599999999999   999999999999999999999999987   55544

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.19  E-value=1.5e-11  Score=108.81  Aligned_cols=65  Identities=20%  Similarity=0.253  Sum_probs=55.6

Q ss_pred             EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++|++++|++  +.+++++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++.
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~~   69 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKP---GEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSIL---IDGVDIS   69 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEE---ECCEEhH
Confidence            789999999963  4799999999999   999999999999999999999999888   566554   3555443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.19  E-value=1.5e-11  Score=111.56  Aligned_cols=60  Identities=20%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc-cchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA-DSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi-d~d~~  128 (287)
                      +++++|++++| +..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+.+. ++|.+
T Consensus         4 ~l~~~~l~~~~-~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i   64 (254)
T PRK10418          4 QIELRNIALQA-AQPLVHGVSLTLQR---GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV   64 (254)
T ss_pred             EEEEeCeEEEe-ccceecceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE
Confidence            58999999999 56799999999999   999999999999999999999999877321 45544

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.19  E-value=1.7e-11  Score=125.11  Aligned_cols=59  Identities=22%  Similarity=0.238  Sum_probs=54.3

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++|+++|++++|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   |+|.+
T Consensus         2 ~~l~i~~ls~~~~~~~il~~is~~i~~---Ge~v~LvG~NGsGKSTLLriiaG~~~p---~~G~I   60 (635)
T PRK11147          2 SLISIHGAWLSFSDAPLLDNAELHIED---NERVCLVGRNGAGKSTLMKILNGEVLL---DDGRI   60 (635)
T ss_pred             cEEEEeeEEEEeCCceeEeCcEEEECC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCeEE
Confidence            369999999999988999999999999   999999999999999999999999887   55554

>PRK14531 adenylate kinase; Provisional

Probab=99.19  E-value=9.2e-10  Score=95.20  Aligned_cols=164  Identities=16%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCchhhhhh---hhchhhhhhhHHHHHH-Hhhc-CCCeE
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSVAQIFK---ESGEAYFREYESKALQ-KLSL-VPQQV  168 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i~~~~~---~~g~~~fr~~e~~~l~-~l~~-~~~~v  168 (287)
                      ..|+|+||+||||||+++.||..++..++++|+++.+.. .+.++.....   ..|...--..-..++. .+.. ....+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~   82 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW   82 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence            469999999999999999999999999999999887654 2333322111   2222110000011111 2211 11112


Q ss_pred             EecCC-ceEeccccHH-hhc----C-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh--
Q 023118          169 VATGG-GAVVRPLNWR-FMR----Q-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE--  239 (287)
Q Consensus       169 ia~gg-G~v~~~~~~~-~L~----~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~--  239 (287)
                      |-.|- ........+. .+.    . ..+|||++|++++.+|+..|+   |+  . +..+..   ..++..-.+...|  
T Consensus        83 ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~---r~--d-D~~e~i---~~Rl~~y~~~~~pv~  153 (183)
T PRK14531         83 LLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG---RA--D-DNEAVI---RNRLEVYREKTAPLI  153 (183)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---CC--C-CCHHHH---HHHHHHHHHHHHHHH
Confidence            22221 1111111111 111    1 468999999999999998764   21  1 111111   1233222223333  


Q ss_pred             -hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          240 -AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       240 -~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                       .|..-+..+          .||.+ -++++|..+|.+.+
T Consensus       154 ~~y~~~~~~~----------~id~~-~~~~~v~~~i~~~l  182 (183)
T PRK14531        154 DHYRQRGLLQ----------SVEAQ-GSIEAITERIEKVL  182 (183)
T ss_pred             HHHHhcCCEE----------EEECC-CCHHHHHHHHHHHh
Confidence             444333323          25665 48999999988764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.19  E-value=2e-11  Score=111.14  Aligned_cols=55  Identities=18%  Similarity=0.261  Sum_probs=52.3

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .++++++|++++|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|
T Consensus         8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~iaG~~~~   62 (257)
T PRK14246          8 EDVFNISRLYLYINDKAILKDITIKIPN---NSIFGIMGPSGSGKSTLLKVLNRLIEI   62 (257)
T ss_pred             hhheeeeeEEEecCCceeEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3579999999999999999999999999   999999999999999999999999887

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.9e-11  Score=113.04  Aligned_cols=55  Identities=18%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             CCccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           62 NAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        62 ~~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +.++++++|+++.|++..+|+|+||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus        36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~L~Gl~~   90 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEFEAVKKVNADILS---KYVTAIIGPSGCGKSTFLRAINRMND   90 (286)
T ss_pred             CceEEEEeeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccc
Confidence            44579999999999888899999999999   99999999999999999999999764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=1.7e-11  Score=115.33  Aligned_cols=60  Identities=15%  Similarity=0.159  Sum_probs=53.5

Q ss_pred             ccEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++.|++     ..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~L~Gl~~p---~~G~I~   84 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEK---NKIYFIIGNSGSGKSTLVTHFNGLIKS---KYGTIQ   84 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEE
Confidence            47999999999974     3599999999999   999999999999999999999999988   456543

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.19  E-value=1.3e-11  Score=110.48  Aligned_cols=64  Identities=25%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             EEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++   ..+|+++||++++   |++++|+|+||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~   67 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPP---GKTVALVGSSGCGKSTVVSLLERFYDP---TSGEIL---LDGVDI   67 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecC---CCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEE---ECCEeh
Confidence            468999999963   4699999999999   999999999999999999999999987   566554   345444

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13808 adenylate kinase; Provisional

Probab=99.19  E-value=9.2e-10  Score=103.92  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHH-HhhcCCCeEE
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQ-KLSLVPQQVV  169 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~-~l~~~~~~vi  169 (287)
                      +|+|+||+||||||+++.|+..+++.+++.|+++...+ .    |..+.+++.. |...--+.-..++. .+....    
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~----   76 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPD----   76 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhccc----
Confidence            58999999999999999999999999999999987653 1    2222333221 21111111111222 222111    


Q ss_pred             ecCCceEec--cccHH-------hhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCC-cCCCCcchhhHHHHHHHHHH
Q 023118          170 ATGGGAVVR--PLNWR-------FMR-----QGITVFLNVPLDALARRIAAVGTDSFPL-LDYDSADSYTKAFTALSALS  234 (287)
Q Consensus       170 a~ggG~v~~--~~~~~-------~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPl-l~~~~~~~~~~~~~~l~~l~  234 (287)
                       +..|.|++  |.+..       +|.     -.++|||++|++++.+|+..|....+.- ......+..+....+| +.|
T Consensus        77 -~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL-~~Y  154 (333)
T PRK13808         77 -AANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRL-ASY  154 (333)
T ss_pred             -ccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHH-HHH
Confidence             12233333  33311       121     2579999999999999998752110000 0000011111112233 333


Q ss_pred             HHH----HhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          235 KER----SEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       235 ~~R----~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      .+.    ...|...+..+.          ||.+ .++++|.++|...|..++.
T Consensus       155 ~~~t~PLl~~Y~e~~~lv~----------IDa~-~siEEV~eeI~~~L~~~~~  196 (333)
T PRK13808        155 RAQTEPLVHYYSEKRKLLT----------VDGM-MTIDEVTREIGRVLAAVGA  196 (333)
T ss_pred             HHHhHHHHHHhhccCcEEE----------EECC-CCHHHHHHHHHHHHHHHhC
Confidence            333    245655444442          5664 5899999999999987765

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.19  E-value=2.1e-11  Score=107.07  Aligned_cols=66  Identities=23%  Similarity=0.294  Sum_probs=57.2

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      .++++|++++|++  ..+++++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.   ++|.++.
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~~   73 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKA---GEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIE---IDGIDIS   73 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEE---ECCEEhH
Confidence            5899999999975  4799999999999   999999999999999999999999888   566654   4565553

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.19  E-value=1.6e-11  Score=116.06  Aligned_cols=66  Identities=17%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             ccEEEcceEEEcCC-------------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHH
Q 023118           64 HDVESGTFCDSLDG-------------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVE  130 (287)
Q Consensus        64 ~~l~~~~l~~~~~~-------------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie  130 (287)
                      ++|+++||++.|+.             ..+++|+||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+. 
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~-   79 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYE---GETLGVVGESGCGKSTFARAIIGLVKA---TDGEVA-   79 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEE-
Confidence            47999999999962             5699999999999   999999999999999999999999987   566553 


Q ss_pred             HHhCCCch
Q 023118          131 KLMGGTSV  138 (287)
Q Consensus       131 ~~~~G~~i  138 (287)
                        ++|.++
T Consensus        80 --~~G~~i   85 (331)
T PRK15079         80 --WLGKDL   85 (331)
T ss_pred             --ECCEEC
Confidence              345444

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=1.4e-11  Score=114.11  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=51.6

Q ss_pred             EEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++|+++.|+.     ..+|+|+||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   64 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPS---GSYVAIIGHTGSGKSTLLQHLNGLLQP---TSGTV   64 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEE
Confidence            789999999964     4699999999999   999999999999999999999999987   45544

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.19  E-value=1.6e-11  Score=126.12  Aligned_cols=68  Identities=22%  Similarity=0.315  Sum_probs=59.2

Q ss_pred             cEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||+++|+  +..+|+|+||++++   |+.++|+|+||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~---Ge~vaIvG~sGsGKSTLlklL~gl~~p---~~G~I~---idg~~i~~~  520 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEP---GEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVF---YDGQDLAGL  520 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEE---ECCEEcCcC
Confidence            489999999995  46799999999999   999999999999999999999999999   566664   467666554

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.19  E-value=1.5e-11  Score=109.79  Aligned_cols=64  Identities=27%  Similarity=0.390  Sum_probs=54.5

Q ss_pred             EEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|+ +..+++++||++.+   |++++|+||||||||||+++|+|.+.+   +.|.+.   ++|.++
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~---~~g~~~   65 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPA---GKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSIL---IDGQDI   65 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEE---ECCEEh
Confidence            46899999995 56799999999999   999999999999999999999999987   566553   345444

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.18  E-value=1.8e-11  Score=121.41  Aligned_cols=59  Identities=24%  Similarity=0.259  Sum_probs=54.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I   61 (501)
T PRK11288          3 PYLSFDGIGKTFPGVKALDDISFDCRA---GQVHALMGENGAGKSTLLKILSGNYQP---DAGSI   61 (501)
T ss_pred             ceEEEeeeEEEECCEEEEeeeeEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCCEE
Confidence            469999999999988899999999999   999999999999999999999999887   56654

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=4.7e-11  Score=108.91  Aligned_cols=55  Identities=24%  Similarity=0.187  Sum_probs=51.6

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+++++|+++.|+++.+|+++||++.+   |++++|+|+||||||||+++|+|.+.|
T Consensus        14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   68 (265)
T PRK14252         14 QQKSEVNKLNFYYGGYQALKNINMMVHE---KQVTALIGPSGCGKSTFLRCFNRMHDL   68 (265)
T ss_pred             CceEEEEEEEEEECCeeeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcccCC
Confidence            4579999999999988899999999999   999999999999999999999999865

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.18  E-value=2.3e-11  Score=122.25  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|+ ++.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~---Ge~~~iiG~NGsGKSTLlk~i~G~~~p---~~G~i   64 (556)
T PRK11819          5 YIYTMNRVSKVVPPKKQILKDISLSFFP---GAKIGVLGLNGAGKSTLLRIMAGVDKE---FEGEA   64 (556)
T ss_pred             EEEEEeeEEEEeCCCCeeeeCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence            4799999999998 78899999999999   999999999999999999999999887   45543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.9e-11  Score=120.18  Aligned_cols=67  Identities=28%  Similarity=0.347  Sum_probs=60.2

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      .++++++|++|+|+..++|+++||++.+   |++.+|+|.||+|||||.|+|+|.+.|   |+|.+.   ++|..+
T Consensus         6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~---GEV~aL~GeNGAGKSTLmKiLsGv~~p---~~G~I~---~~G~~~   72 (500)
T COG1129           6 PPLLELRGISKSFGGVKALDGVSLTVRP---GEVHALLGENGAGKSTLMKILSGVYPP---DSGEIL---IDGKPV   72 (500)
T ss_pred             cceeeeecceEEcCCceeeccceeEEeC---ceEEEEecCCCCCHHHHHHHHhCcccC---CCceEE---ECCEEc
Confidence            3579999999999999999999999999   999999999999999999999999999   788775   455433

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.18  E-value=2e-11  Score=125.70  Aligned_cols=68  Identities=25%  Similarity=0.354  Sum_probs=59.9

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|+ ++.+|+|+||++++   |+.++|+|+||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~---G~~vaIvG~SGsGKSTLlklL~gl~~p---~~G~I~---idg~~i~~~  541 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKM---NSKTTIVGMSGSGKSTLAKLLVGFFQA---RSGEIL---LNGFSLKDI  541 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCcEEE---ECCEEHHHc
Confidence            589999999997 46799999999999   999999999999999999999999999   566664   477777654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=3.6e-11  Score=108.69  Aligned_cols=54  Identities=19%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|+++.+|+++||++.+   |++++|+|+||||||||+++|+|.+.|
T Consensus         3 ~~l~~~~l~~~~~~~~il~~~s~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~   56 (251)
T PRK14249          3 PKIKIRGVNFFYHKHQVLKNINMDFPE---RQITAIIGPSGCGKSTLLRALNRMNDI   56 (251)
T ss_pred             ceEEEEEEEEEECCeeEecceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCc
Confidence            368999999999988899999999999   999999999999999999999999887

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=2.5e-11  Score=121.13  Aligned_cols=58  Identities=21%  Similarity=0.275  Sum_probs=53.1

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+++.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+
T Consensus         1 ml~i~~ls~~~~~~~il~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~Gl~~p---~~G~i   58 (530)
T PRK15064          1 MLSTANITMQFGAKPLFENISVKFGG---GNRYGLIGANGCGKSTFMKILGGDLEP---SAGNV   58 (530)
T ss_pred             CEEEEEEEEEeCCcEeEeCCEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence            47899999999988899999999999   999999999999999999999999877   45543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.18  E-value=1.1e-11  Score=114.45  Aligned_cols=63  Identities=19%  Similarity=0.284  Sum_probs=58.2

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT  136 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~  136 (287)
                      ++.++++++.|+...+++|++++|+.   |+.++|.|||||||||++++|||++.|   |.|.++   ++|.
T Consensus         2 ~i~i~~~~~~~~~~~a~~di~l~i~~---Ge~vaLlGpSGaGKsTlLRiIAGLe~p---~~G~I~---~~~~   64 (345)
T COG1118           2 SIRINNVKKRFGAFGALDDISLDIKS---GELVALLGPSGAGKSTLLRIIAGLETP---DAGRIR---LNGR   64 (345)
T ss_pred             ceeehhhhhhcccccccccceeeecC---CcEEEEECCCCCcHHHHHHHHhCcCCC---CCceEE---ECCE
Confidence            47899999999999999999999999   999999999999999999999999999   788775   5565

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.17  E-value=2.5e-11  Score=103.95  Aligned_cols=151  Identities=21%  Similarity=0.311  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhh---hHHHHHHHhhcCCCeEEecC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFRE---YESKALQKLSLVPQQVVATG  172 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~---~e~~~l~~l~~~~~~via~g  172 (287)
                      .|+|.|.||+||||+.+.|+ .+++.++...+++.+.  |.     +.  +.+.-|.   .+.+.++....   ..+..+
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~--~~-----~~--~~de~r~s~~vD~d~~~~~le---~~~~~~   68 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN--GL-----YT--EYDELRKSVIVDVDKLRKRLE---ELLREG   68 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc--CC-----ee--ccCCccceEEeeHHHHHHHHH---HHhccC
Confidence            68999999999999999999 9999999999887443  11     00  1110000   01111111110   011112


Q ss_pred             CceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEecc
Q 023118          173 GGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLL  251 (287)
Q Consensus       173 gG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~  251 (287)
                      +++ .....-.++. -.++|-|.++|+.+.+|+..||...-....+-  +  .   +.+.-.+.+=.+.+   +..+   
T Consensus        69 ~~I-vd~H~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENv--e--A---Ei~~vi~~EA~E~~---~~v~---  134 (180)
T COG1936          69 SGI-VDSHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENV--E--A---EILDVILIEAVERF---EAVI---  134 (180)
T ss_pred             CeE-eechhhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHH--H--H---HHHHHHHHHHHHhc---CceE---
Confidence            222 2223334455 37899999999999999999875432233221  1  1   12222222222222   2222   


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          252 NLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                             .+||++.+|+++++.|++.+..
T Consensus       135 -------evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         135 -------EVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             -------EEECCCCCHHHHHHHHHHHHcc
Confidence                   2699999999999999999883

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.17  E-value=1.5e-11  Score=110.73  Aligned_cols=58  Identities=24%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+|+||+..+++|+||++++   |+..+++|+||+||||.+++|.+.+.|   +.|.+
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~---G~i~GllG~NGAGKTTtfRmILglle~---~~G~I   59 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPP---GEIFGLLGPNGAGKTTTFRMILGLLEP---TEGEI   59 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecC---CeEEEeecCCCCCccchHHHHhccCCc---cCceE
Confidence            58999999999999999999999999   999999999999999999999999999   56655

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.17  E-value=2.9e-11  Score=121.58  Aligned_cols=68  Identities=25%  Similarity=0.409  Sum_probs=60.9

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|++  ..+|+|+|+++++   |+.++|+|+||||||||+++|+|.+.|   +.|.+.   ++|.++.++
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~---G~~~aIvG~sGsGKSTLl~ll~gl~~p---~~G~I~---i~g~~i~~~  410 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPA---GKTVALVGRSGSGKSTIANLLTRFYDI---DEGEIL---LDGHDLRDY  410 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCceEE---ECCEEhhhc
Confidence            4999999999964  5799999999999   999999999999999999999999999   677765   578887765

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.17  E-value=4.9e-11  Score=103.31  Aligned_cols=60  Identities=27%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      .|+++.|++..++++. +++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|..+
T Consensus         4 ~~l~~~~~~~~~l~~~-~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~i   63 (177)
T cd03222           4 PDCVKRYGVFFLLVEL-GVVKE---GEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDE---WDGITP   63 (177)
T ss_pred             CCeEEEECCEEEEccC-cEECC---CCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEE---ECCEEE
Confidence            5889999999999884 89999   999999999999999999999999988   677664   455443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.17  E-value=1.8e-11  Score=105.16  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=64.1

Q ss_pred             cEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      +|+++++++..+    ...||+++++.|++   |+.++||||||||||||+-+|||+..+   ++|++.   ..|+++..
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~---Ge~vaiVG~SGSGKSTLl~vlAGLd~~---ssGeV~---l~G~~L~~   76 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKR---GETVAIVGPSGSGKSTLLAVLAGLDDP---SSGEVR---LLGQPLHK   76 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecC---CceEEEEcCCCCcHHhHHHHHhcCCCC---CCceEE---EcCcchhh
Confidence            799999999886    35799999999999   999999999999999999999999999   677764   35887766


Q ss_pred             hhhhhchhhhhh
Q 023118          141 IFKESGEAYFRE  152 (287)
Q Consensus       141 ~~~~~g~~~fr~  152 (287)
                      + .+++...||.
T Consensus        77 l-dEd~rA~~R~   87 (228)
T COG4181          77 L-DEDARAALRA   87 (228)
T ss_pred             c-CHHHHHHhhc
Confidence            6 3334444443

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.17  E-value=2.4e-11  Score=125.18  Aligned_cols=68  Identities=24%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|++  +.+|+|+||++++   |+.++|+|+||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~---Ge~vaIvG~sGsGKSTLlklL~gl~~p---~~G~I~---idg~~i~~~  546 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQP---GQRVALVGGSGSGKSTIAKLVAGLYQP---WSGEIL---FDGIPREEI  546 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEeHHHC
Confidence            5899999999974  5799999999999   999999999999999999999999999   566554   366666543

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.17  E-value=9.7e-12  Score=110.90  Aligned_cols=58  Identities=26%  Similarity=0.292  Sum_probs=53.3

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +.++++++.|+++++|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~   80 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPR---GERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVT   80 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            7789999999999999999999999   999999999999999999999999887   566553

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.17  E-value=2.3e-11  Score=108.73  Aligned_cols=57  Identities=16%  Similarity=0.107  Sum_probs=50.2

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|+++.|++..  .++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 ~l~~~~l~~~~~~~~--~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~   57 (232)
T PRK10771          1 MLKLTDITWLYHHLP--MRFDLTVER---GERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLT   57 (232)
T ss_pred             CeEEEEEEEEECCcc--ceeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE
Confidence            478999999998643  389999999   999999999999999999999999987   566553

>PLN02200 adenylate kinase family protein

Probab=99.16  E-value=2.7e-09  Score=96.31  Aligned_cols=168  Identities=15%  Similarity=0.188  Sum_probs=93.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCc-----hhhhhhhhchhhhhhhHHHHHH-HhhcC-CC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTS-----VAQIFKESGEAYFREYESKALQ-KLSLV-PQ  166 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~-----i~~~~~~~g~~~fr~~e~~~l~-~l~~~-~~  166 (287)
                      ..+|+|+|++||||||+++.|+..++..++++|+++.+...+.+     +.+.. ..|...--......+. .+... .+
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~-~~G~~vp~e~~~~~l~~~l~~~~~~  121 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTI-KEGKIVPSEVTVKLIQKEMESSDNN  121 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHH-HcCCCCcHHHHHHHHHHHHhcCCCC
Confidence            46889999999999999999999999999999999876542221     11111 1122111111112222 22221 12


Q ss_pred             eEEecCCceEeccccHHhhc------CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-HH-
Q 023118          167 QVVATGGGAVVRPLNWRFMR------QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-RS-  238 (287)
Q Consensus       167 ~via~ggG~v~~~~~~~~L~------~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-R~-  238 (287)
                      .++-.|  .+........+.      -..+|||++|++.+.+|+..|.. .|+-   ++.+..   ..++ +.|.+ .. 
T Consensus       122 ~~ILDG--~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-~r~d---d~~e~~---~~Rl-~~y~~~~~p  191 (234)
T PLN02200        122 KFLIDG--FPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-GRVD---DNIDTI---KKRL-KVFNALNLP  191 (234)
T ss_pred             eEEecC--CcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC-CCCC---CCHHHH---HHHH-HHHHHHHHH
Confidence            233333  111111122221      25789999999999999987642 2321   111111   1222 22222 22 


Q ss_pred             --hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          239 --EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       239 --~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                        ..|+..+..+          .||.+. +|++|.+.|.+.+...+.
T Consensus       192 v~~~y~~~~~~~----------~IDa~~-~~eeV~~~v~~~l~~~~~  227 (234)
T PLN02200        192 VIDYYSKKGKLY----------TINAVG-TVDEIFEQVRPIFAACEA  227 (234)
T ss_pred             HHHHHHhcCCEE----------EEECCC-CHHHHHHHHHHHHHHcCC
Confidence              3454433222          268775 999999999999887654

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.16  E-value=1.1e-11  Score=108.83  Aligned_cols=58  Identities=28%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             cEEEcceEEEcCCee-eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKW-LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~-il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |+++.+++|+|+..+ +++|+||+++.   |++++|.|+||+||||++++||.+|.|   |.|.+
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~---Gei~GlLG~NGAGKTT~LRmiatlL~P---~~G~v   59 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEE---GEITGLLGENGAGKTTLLRMIATLLIP---DSGKV   59 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEecc---ceEEEEEcCCCCCchhHHHHHHHhccC---CCceE
Confidence            589999999999865 99999999999   999999999999999999999999999   66655

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.15  E-value=2.9e-11  Score=109.92  Aligned_cols=60  Identities=23%  Similarity=0.311  Sum_probs=53.7

Q ss_pred             ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ..++++|+++.|++  ..+++++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+.
T Consensus        18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~   79 (257)
T cd03288          18 GEIKIHDLCVRYENNLKPVLKHVKAYIKP---GQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIV   79 (257)
T ss_pred             ceEEEEEEEEEeCCCCCcceeEEEEEEcC---CCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEE
Confidence            36899999999975  5799999999999   999999999999999999999999877   566553

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.15  E-value=3.3e-11  Score=121.13  Aligned_cols=68  Identities=26%  Similarity=0.329  Sum_probs=60.4

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|+++.|+ ++++++|+||++++   |+.++|+||+||||||+.++|++.+.|   +.|.+.   .+|.++.++
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~---Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~---idg~dI~~i  396 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEP---GEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEIL---IDGIDIRDI  396 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEE---ECCEehhhc
Confidence            499999999998 68999999999999   999999999999999999999999999   566654   367777665

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.15  E-value=3e-11  Score=106.29  Aligned_cols=62  Identities=23%  Similarity=0.246  Sum_probs=52.6

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|++...  ++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 i~~~~l~~~~~~~~~--~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~---~~g~~~   62 (211)
T cd03298           1 VRLDKIRFSYGEQPM--HFDLTFAQ---GEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVL---INGVDV   62 (211)
T ss_pred             CEEEeEEEEeCCEec--ceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEc
Confidence            468999999987543  99999999   999999999999999999999999988   566654   456544

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.15  E-value=1.3e-11  Score=113.06  Aligned_cols=56  Identities=18%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ..+|+++.|+...+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~L~Gl~~p---~~G~i   81 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVRE---GEIFVIMGLSGSGKSTLLRCINRLIEP---TSGKV   81 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEE
Confidence            567999999999999999999999   999999999999999999999999987   55544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=2.8e-11  Score=111.63  Aligned_cols=55  Identities=24%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .+++++|+++.|++  ..+++++||++.+   |++++|+||||||||||+++|+|.+.|.
T Consensus         4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~---Ge~~~I~G~nGaGKSTLl~~l~G~~~p~   60 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKPALNDISFSIPR---GSWTALIGHNGSGKSTISKLINGLLLPD   60 (282)
T ss_pred             ceEEEEEEEEEcCCCCccceeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence            36899999999964  4699999999999   9999999999999999999999999874

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.15  E-value=3.6e-11  Score=119.73  Aligned_cols=68  Identities=24%  Similarity=0.311  Sum_probs=60.1

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|++  +++|+|+|+++++   |+.++|+|++|||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~I~---~~g~~i~~~  389 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPP---GERVALVGPSGAGKSTLLNLLLGFVDP---TEGSIA---VNGVPLADA  389 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEehhhC
Confidence            5899999999975  4699999999999   999999999999999999999999999   567665   478777665

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.15  E-value=3.4e-10  Score=102.45  Aligned_cols=154  Identities=21%  Similarity=0.305  Sum_probs=90.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118           97 LFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT  171 (287)
Q Consensus        97 i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~  171 (287)
                      |+|+|++||||||+++.|+..+.     ..+++.|.+.+...       .+...++..+|......++........||..
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~-------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D   74 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP-------VWKEKYEEFIRDSTLYLIKTALKNKYSVIVD   74 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH-------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            78999999999999999998763     23455665543221       0122345566666666666655545557766


Q ss_pred             CCceEec--cccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh--h
Q 023118          172 GGGAVVR--PLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA--N  243 (287)
Q Consensus       172 ggG~v~~--~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~--~  243 (287)
                      ++.....  ...+...+. +   .+|||++|++.+.+|...++.   +.     .+   +.+..+.+.|+...+.|.  .
T Consensus        75 ~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~---~~-----~~---~~i~~l~~r~e~p~~~~~wd~  143 (249)
T TIGR03574        75 DTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE---KI-----PN---EVIKDMYEKFDEPGTKYSWDL  143 (249)
T ss_pred             ccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC---CC-----CH---HHHHHHHHhhCCCCCCCCccC
Confidence            6532111  111122222 3   689999999999999876532   11     11   112233333333334443  2


Q ss_pred             CCeEEeccccccccccccCCC-CCHHHHHHHHHHHHHH
Q 023118          244 ADATVSLLNLAACIGLKDVLD-ITPTTIAMEVLVQAQK  280 (287)
Q Consensus       244 ad~~v~~~~~a~~~~~idt~~-~t~~eva~~i~~~i~~  280 (287)
                      ++++|            |++. .+++++++.|++.+..
T Consensus       144 ~~~~v------------d~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       144 PDLTI------------DTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             ceEEe------------cCCCCCCHHHHHHHHHHHhhc
Confidence            55554            5654 6889999999988764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK14526 adenylate kinase; Provisional

Probab=99.15  E-value=2.2e-09  Score=95.48  Aligned_cols=107  Identities=20%  Similarity=0.317  Sum_probs=65.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-----CCchhhhhhhhchhhhhhhHHHHHHH-hhcCCCeEE
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-----GTSVAQIFKESGEAYFREYESKALQK-LSLVPQQVV  169 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-----G~~i~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~vi  169 (287)
                      .|+|+||+||||||+++.|++.+++.++++|+++.+...     |..+.+++. .|.-.--..-..++.+ +....    
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~~----   76 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTIK----   76 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhccc----
Confidence            488999999999999999999999999999999876542     233444432 2221111111122222 22111    


Q ss_pred             ecCCceEec--cccHH---hhc----CCcEEEEecCHHHHHHHHhhcC
Q 023118          170 ATGGGAVVR--PLNWR---FMR----QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       170 a~ggG~v~~--~~~~~---~L~----~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                       +..|.+++  |.+..   .|.    .-.+|+|++|.+++.+|+..|.
T Consensus        77 -~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~  123 (211)
T PRK14526         77 -NNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRR  123 (211)
T ss_pred             -ccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence             12333332  33322   222    2357889999999999998763

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3.7e-11  Score=108.58  Aligned_cols=51  Identities=16%  Similarity=0.131  Sum_probs=48.3

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      -+++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|...
T Consensus         6 ~~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~i~G~~~   56 (251)
T PRK14244          6 ASVKNLNLWYGSKQILFDINLDIYK---REVTAFIGPSGCGKSTFLRCFNRMND   56 (251)
T ss_pred             EEeeeEEEEECCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4689999999888899999999999   99999999999999999999999976

>PRK02496 adk adenylate kinase; Provisional

Probab=99.15  E-value=1.9e-09  Score=92.87  Aligned_cols=162  Identities=18%  Similarity=0.234  Sum_probs=89.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCch----hhhhhhhchhhhhhhHHHHHHH-hhcC--CC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSV----AQIFKESGEAYFREYESKALQK-LSLV--PQ  166 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i----~~~~~~~g~~~fr~~e~~~l~~-l~~~--~~  166 (287)
                      .+++|+||+||||||+++.|+..++..+++.|+++.+... +..+    ..++ ..|..........++.+ +...  ..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~   80 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN   80 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence            3589999999999999999999999999999998876542 2222    1121 22332222222333332 2211  12


Q ss_pred             eEEecCC-ceEeccccHH-hhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-HH
Q 023118          167 QVVATGG-GAVVRPLNWR-FMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-RS  238 (287)
Q Consensus       167 ~via~gg-G~v~~~~~~~-~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-R~  238 (287)
                      .++..|- .++.....+. .+.     ...+|||++|.+.+.+|+..++   ++  . ...+    .+.+..+.|.+ -.
T Consensus        81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---~~--d-d~~~----~~~~r~~~y~~~~~  150 (184)
T PRK02496         81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG---RK--D-DTEE----VIRRRLEVYREQTA  150 (184)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---CC--C-CCHH----HHHHHHHHHHHHHH
Confidence            2333332 1111111111 111     2578999999999999998764   21  1 1111    11222222222 11


Q ss_pred             h---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          239 E---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       239 ~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      |   .|+..+..+          .||.+. ++++|.++|...+
T Consensus       151 ~v~~~~~~~~~~~----------~Ida~~-~~~~V~~~i~~~l  182 (184)
T PRK02496        151 PLIDYYRDRQKLL----------TIDGNQ-SVEAVTTELKAAL  182 (184)
T ss_pred             HHHHHHHhcCCEE----------EEECCC-CHHHHHHHHHHHh
Confidence            2   444323222          267775 8999999998765

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.14  E-value=1.7e-09  Score=95.77  Aligned_cols=107  Identities=16%  Similarity=0.261  Sum_probs=66.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-----chhhhhhhhchhhhhhhHHHHHHH-hhcCCCeEE
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-----SVAQIFKESGEAYFREYESKALQK-LSLVPQQVV  169 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-----~i~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~vi  169 (287)
                      +|+|+|++||||||+++.||..+++.+++.|+++.+...+.     .+.+++. .|..........++.+ +....    
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~----   76 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPD----   76 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccC----
Confidence            58999999999999999999999999999999987654222     2223322 2322222222333332 22211    


Q ss_pred             ecCCceEec--cccH---Hhh----c-----CCcEEEEecCHHHHHHHHhhcC
Q 023118          170 ATGGGAVVR--PLNW---RFM----R-----QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       170 a~ggG~v~~--~~~~---~~L----~-----~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                       ++.|.|++  |.+.   ..|    .     -..+|||++|.+.+.+|+..|.
T Consensus        77 -~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  128 (215)
T PRK00279         77 -CKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR  128 (215)
T ss_pred             -ccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence             12233333  2221   223    1     1378999999999999998764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.14  E-value=3.3e-11  Score=119.37  Aligned_cols=53  Identities=30%  Similarity=0.391  Sum_probs=50.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|
T Consensus         1 ~l~i~~l~~~~~~~~il~~isl~i~~---Ge~~~liG~nGsGKSTLl~~i~G~~~~   53 (500)
T TIGR02633         1 LLEMKGIVKTFGGVKALDGIDLEVRP---GECVGLCGENGAGKSTLMKILSGVYPH   53 (500)
T ss_pred             CEEEEeEEEEeCCeEeecceEEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            47899999999988899999999999   999999999999999999999999875

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=6.3e-11  Score=107.93  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=50.8

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++|+++.|++..+|+|+||++++   |++++|+|+||||||||+++|+|.+.+
T Consensus         7 ~l~~~nl~~~~~~~~il~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~   59 (261)
T PRK14258          7 AIKVNNLSFYYDTQKILEGVSMEIYQ---SKVTAIIGPSGCGKSTFLKCLNRMNEL   59 (261)
T ss_pred             eEEEeeEEEEeCCeeEeeceEEEEcC---CcEEEEECCCCCCHHHHHHHHhcccCC
Confidence            58999999999888899999999999   999999999999999999999999876

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=4.4e-11  Score=111.85  Aligned_cols=58  Identities=26%  Similarity=0.334  Sum_probs=51.7

Q ss_pred             cEEEcceEEEcCCe-----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGK-----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~-----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +|+++|+++.|++.     .+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   +.|.+
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~---Ge~v~iiG~nGsGKSTLl~~L~Gl~~p---~~G~i   64 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQ---GEFIAIIGQTGSGKTTFIEHLNALLLP---DTGTI   64 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEE
Confidence            38899999999742     599999999999   999999999999999999999999988   45544

>PRK04040 adenylate kinase; Provisional

Probab=99.14  E-value=2.4e-09  Score=93.54  Aligned_cols=121  Identities=14%  Similarity=0.178  Sum_probs=70.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHh--CCCch-hhhhhhhchh---hhhhhHHHHHHHhhcCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLM--GGTSV-AQIFKESGEA---YFREYESKALQKLSLVP  165 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~--~G~~i-~~~~~~~g~~---~fr~~e~~~l~~l~~~~  165 (287)
                      ...|+|+|++||||||+++.|+..+  ++.|++.|+++....  .|... .+-+..-...   .++..-.+.+++... .
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~-~   80 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAG-E   80 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhc-C
Confidence            4689999999999999999999999  899999998864432  23211 1111111111   111112222233222 2


Q ss_pred             CeEEecCCceEecccc-H--------HhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCc
Q 023118          166 QQVVATGGGAVVRPLN-W--------RFMRQGITVFLNVPLDALARRIAAVGTDSFPLL  215 (287)
Q Consensus       166 ~~via~ggG~v~~~~~-~--------~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll  215 (287)
                      ..++-.|..++.++.. |        +.+....+|||.+||+.+.+|......+.|+..
T Consensus        81 ~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~e  139 (188)
T PRK04040         81 GPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVE  139 (188)
T ss_pred             CCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCC
Confidence            2355556544443331 1        223336789999999999999775323345543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.14  E-value=5.5e-11  Score=105.16  Aligned_cols=54  Identities=22%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +.++++||++.||++.+|+++|+++++   +++.+|||||||||||++|.+......
T Consensus         6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~---~~VTAlIGPSGcGKST~LR~lNRmndl   59 (253)
T COG1117           6 PAIEVRDLNLYYGDKHALKDINLDIPK---NKVTALIGPSGCGKSTLLRCLNRMNDL   59 (253)
T ss_pred             ceeEecceeEEECchhhhccCceeccC---CceEEEECCCCcCHHHHHHHHHhhccc
Confidence            468999999999999999999999999   999999999999999999999876544

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.14  E-value=4.3e-11  Score=123.54  Aligned_cols=68  Identities=25%  Similarity=0.301  Sum_probs=59.3

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||+++|++   ..+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~---Ge~vaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~---idg~~i~~~  548 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHP---GEVVALVGPSGSGKSTVAALLQNLYQP---TGGQVL---LDGVPLVQY  548 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEE---ECCEEHHhc
Confidence            5999999999963   4699999999999   999999999999999999999999999   566664   467766654

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.14  E-value=3.3e-11  Score=105.42  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=50.9

Q ss_pred             ccEEEcceEEEcCCee--eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           64 HDVESGTFCDSLDGKW--LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~--il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .++.+++++.+|+++.  +|+|+|+++.+   |+.++++||||||||||++++||...|.
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~---ge~vv~lGpSGcGKTTLLnl~AGf~~P~   58 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIAS---GELVVVLGPSGCGKTTLLNLIAGFVTPS   58 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecC---CCEEEEEcCCCccHHHHHHHHhcCcCcc
Confidence            3577899999998776  99999999999   9999999999999999999999999883

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=3e-11  Score=116.93  Aligned_cols=45  Identities=20%  Similarity=0.392  Sum_probs=40.3

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus        41 ~~~L~~isl~i~~---Gei~~LvG~NGsGKSTLLr~I~Gl~~p---~sG~I   85 (400)
T PRK10070         41 SLGVKDASLAIEE---GEIFVIMGLSGSGKSTMVRLLNRLIEP---TRGQV   85 (400)
T ss_pred             eEEEEeEEEEEcC---CCEEEEECCCCchHHHHHHHHHcCCCC---CCCEE
Confidence            3489999999999   999999999999999999999999988   45543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.13  E-value=6.7e-11  Score=120.80  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ..+++++|+++.|++..+|+++||+|.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       310 ~~~l~~~~l~~~y~~~~il~~isl~i~~---Ge~~~l~G~NGsGKSTLlk~l~G~~~p---~~G~i  369 (638)
T PRK10636        310 NPLLKMEKVSAGYGDRIILDSIKLNLVP---GSRIGLLGRNGAGKSTLIKLLAGELAP---VSGEI  369 (638)
T ss_pred             CceEEEEeeEEEeCCeeeeccceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeE
Confidence            3479999999999988999999999999   999999999999999999999999877   45543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.13  E-value=5e-11  Score=118.92  Aligned_cols=59  Identities=25%  Similarity=0.315  Sum_probs=55.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++|.++|+++.|+++.+|+++|+++.+   |++|+|||+||||||||+|+|+|.+.|   ++|.+
T Consensus         2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~---G~riGLvG~NGaGKSTLLkilaG~~~~---~~G~i   60 (530)
T COG0488           2 SMITLENLSLAYGDRPLLENVSLTLNP---GERIGLVGRNGAGKSTLLKILAGELEP---DSGEV   60 (530)
T ss_pred             ceEEEeeeEEeeCCceeecCCcceeCC---CCEEEEECCCCCCHHHHHHHHcCCCcC---CCCeE
Confidence            478999999999999999999999999   999999999999999999999999988   67765

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.13  E-value=2.3e-10  Score=95.21  Aligned_cols=109  Identities=28%  Similarity=0.397  Sum_probs=71.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCCccccchhHHHH-----HhCCCchhhhhhhhchhhhhhhHHHHHHHhh-cCCCeEEe
Q 023118           97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEK-----LMGGTSVAQIFKESGEAYFREYESKALQKLS-LVPQQVVA  170 (287)
Q Consensus        97 i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~-----~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~-~~~~~via  170 (287)
                      +.|+|++||||||+++.|+..++..++|+|.+...     +..|....+   ...+.+++.......+.+. .....|+.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~vVid   78 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLND---EDRWPWLQALTDALLAKLASAGEGVVVA   78 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCc---cchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            78999999999999999999999999999998753     233443322   1234444544444444443 33344555


Q ss_pred             cCCceEeccccHHhhcC------CcEEEEecCHHHHHHHHhhcCCCC
Q 023118          171 TGGGAVVRPLNWRFMRQ------GITVFLNVPLDALARRIAAVGTDS  211 (287)
Q Consensus       171 ~ggG~v~~~~~~~~L~~------g~~I~L~~~~e~l~~Ri~~~~~~~  211 (287)
                      ++.   .....+..+..      -.+|||++|++++.+|+..|..+.
T Consensus        79 ~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~  122 (150)
T cd02021          79 CSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHF  122 (150)
T ss_pred             ecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccCC
Confidence            443   23333433332      258999999999999998875443

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.13  E-value=4.6e-11  Score=120.43  Aligned_cols=68  Identities=21%  Similarity=0.347  Sum_probs=59.4

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|+++.|++  +.+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   ++|.+.   .+|.++.++
T Consensus       338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~---G~~~aivG~sGsGKSTL~~ll~g~~~p---~~G~I~---i~g~~i~~~  407 (574)
T PRK11160        338 SLTLNNVSFTYPDQPQPVLKGLSLQIKA---GEKVALLGRTGCGKSTLLQLLTRAWDP---QQGEIL---LNGQPIADY  407 (574)
T ss_pred             eEEEEEEEEECCCCCCcceecceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEEhhhC
Confidence            5999999999964  4699999999999   999999999999999999999999998   677664   467766554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.13  E-value=5.3e-11  Score=119.48  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=53.7

Q ss_pred             ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|++++|+ ++++|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~~i~~~nls~~~~~~~~il~~is~~i~~---Ge~~~liG~NGsGKSTLl~~i~G~~~p---~~G~i   62 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKEILKDISLSFFP---GAKIGVLGLNGAGKSTLLRIMAGVDKE---FNGEA   62 (552)
T ss_pred             EEEEEeeEEEecCCCCeeecCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence            3689999999998 77899999999999   999999999999999999999999887   45544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK08233 hypothetical protein; Provisional

Probab=99.13  E-value=8.9e-10  Score=93.92  Aligned_cols=167  Identities=16%  Similarity=0.143  Sum_probs=83.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC-CccccchhHHHHHhCCCchhhhhhhhchh---hhhhhHHHHHHHhhcCC--Ce
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD-YTFADSDKYVEKLMGGTSVAQIFKESGEA---YFREYESKALQKLSLVP--QQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~-~~fid~d~~ie~~~~G~~i~~~~~~~g~~---~fr~~e~~~l~~l~~~~--~~  167 (287)
                      +..|+|.|++||||||+++.|++.++ ...+-.|.+.... ....+..... .+..   .....-...++.+....  ..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN-CPEDICKWID-KGANYSEWVLTPLIKDIQELIAKSNVDY   80 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc-Cchhhhhhhh-ccCChhhhhhHHHHHHHHHHHcCCCceE
Confidence            67899999999999999999999886 2222222211000 0001111100 0110   00001111233222222  23


Q ss_pred             EEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh--CC
Q 023118          168 VVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN--AD  245 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~--ad  245 (287)
                      ++..|......+.....  -..+|||++|++++.+|+..|... .+     ..+.   ....+...+..+.|.|..  .+
T Consensus        81 vivd~~~~~~~~~~~~~--~d~~i~l~~~~~~~~~R~~~R~~~-~~-----~~~~---~~~~~~~~~~~~~~~y~~~~~~  149 (182)
T PRK08233         81 IIVDYPFAYLNSEMRQF--IDVTIFIDTPLDIAMARRILRDFK-ED-----TGNE---IHNDLKHYLNYARPLYLEALHT  149 (182)
T ss_pred             EEEeeehhhccHHHHHH--cCEEEEEcCCHHHHHHHHHHHHhh-hc-----cccc---hhhHHHHHHHHHHHHHHHHhhc
Confidence            44333221111111111  268999999999998886654311 11     0111   124466666777787765  11


Q ss_pred             eEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          246 ATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       246 ~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      ..    .-+  ..+||++ .++++++++|...+..
T Consensus       150 ~~----~~~--~~vId~~-~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        150 VK----PNA--DIVLDGA-LSVEEIINQIEEELYR  177 (182)
T ss_pred             Cc----cCC--eEEEcCC-CCHHHHHHHHHHHHHh
Confidence            10    000  0125654 7999999999988764

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.13  E-value=4.6e-11  Score=122.81  Aligned_cols=68  Identities=21%  Similarity=0.332  Sum_probs=58.4

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|++  ..+|+|+||++++   |+.++|+|+||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~---G~~iaIvG~sGsGKSTLlklL~gl~~p---~~G~I~---idg~~l~~~  532 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRP---GEKVAIIGRIGSGKSTLLKLLLGLYQP---TEGSVL---LDGVDIRQI  532 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEEhhhC
Confidence            4899999999963  5699999999999   999999999999999999999999999   566554   466666543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.13  E-value=4.8e-11  Score=120.43  Aligned_cols=67  Identities=19%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .++++|+++.|++ ..+|+|+||++++   |+.++|+|+||||||||+++|+|.+.|   ++|.+.   ++|.++.+
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~---Ge~iaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~---idg~~i~~  407 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPS---RGFVALVGHTGSGKSTLASLLMGYYPL---TEGEIR---LDGRPLSS  407 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCceEE---ECCEEhhh
Confidence            4899999999964 5699999999999   999999999999999999999999999   566554   35665544

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.13  E-value=4.1e-11  Score=110.23  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+.   ..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i   64 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITK---GEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKV   64 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEE
Confidence            6899999999974   3599999999999   999999999999999999999999987   45544

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.12  E-value=7.3e-10  Score=107.19  Aligned_cols=159  Identities=22%  Similarity=0.273  Sum_probs=93.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-C-Cchhhhhhhhchh----------------hhhhhHHH-
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-G-TSVAQIFKESGEA----------------YFREYESK-  156 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G-~~i~~~~~~~g~~----------------~fr~~e~~-  156 (287)
                      .|+|+|..||||||++++|+. +|++++|+|.+..+.+. | ..+.+++...|..                .|++.+.. 
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~   81 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARA   81 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            699999999999999999998 79999999999877652 2 2334555555665                55544332 


Q ss_pred             HHHHhhcCCCeEE--------ecCCceEeccccHHhhc-C------CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcc
Q 023118          157 ALQKLSLVPQQVV--------ATGGGAVVRPLNWRFMR-Q------GITVFLNVPLDALARRIAAVGTDSFPLLDYDSAD  221 (287)
Q Consensus       157 ~l~~l~~~~~~vi--------a~ggG~v~~~~~~~~L~-~------g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~  221 (287)
                      .+..+.  ++.|.        .++++.+.-. +..+|. .      ..+||+++|++.+.+|+..+    |++..     
T Consensus        82 ~le~i~--hP~I~~~i~~~i~~~~~~~vvv~-eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~r----Rg~s~-----  149 (395)
T PRK03333         82 VLNGIV--HPLVGARRAELIAAAPEDAVVVE-DIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQ----RGMAE-----  149 (395)
T ss_pred             HHHHhh--hHHHHHHHHHHHHhcCCCCEEEE-EeeeeecCCchhhCCEEEEEECCHHHHHHHHHhc----CCCCH-----
Confidence            111110  11111        1222212111 112221 1      47899999999999999763    22211     


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          222 SYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       222 ~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                        .++...+...+ ..++.-+.||++|            |++ .+++++..++.+.++.++.
T Consensus       150 --~~a~~ri~~Q~-~~e~k~~~AD~vI------------dN~-~s~e~l~~~v~~~l~~~~~  195 (395)
T PRK03333        150 --ADARARIAAQA-SDEQRRAVADVWL------------DNS-GTPDELVEAVRALWADRLL  195 (395)
T ss_pred             --HHHHHHHHhcC-ChHHHHHhCCEEE------------ECC-CCHHHHHHHHHHHHHHHHh
Confidence              01111221110 1112222378776            543 4899999999999887765

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.12  E-value=7.6e-11  Score=120.29  Aligned_cols=54  Identities=30%  Similarity=0.357  Sum_probs=51.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|
T Consensus       318 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~l~G~~~p  371 (635)
T PRK11147        318 IVFEMENVNYQIDGKQLVKDFSAQVQR---GDKIALIGPNGCGKTTLLKLMLGQLQA  371 (635)
T ss_pred             ceEEEeeeEEEECCeEEEcCcEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            479999999999988899999999999   999999999999999999999999876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.12  E-value=1.7e-11  Score=125.70  Aligned_cols=149  Identities=15%  Similarity=0.160  Sum_probs=110.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh-hhhhhhchhhhhhhHHHHHHHhhc-CCCeEEec
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA-QIFKESGEAYFREYESKALQKLSL-VPQQVVAT  171 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~-~~~~~~g~~~fr~~e~~~l~~l~~-~~~~via~  171 (287)
                      .-.+.++|.+|+||||+++.|+..+++.++|++.+..... +..+. +.+...++..|+..|..++..++. ....++++
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~-rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~  293 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAY-RRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKT  293 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchh-HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4578899999999999999999999999999998876555 44554 345566778888888887777664 34557788


Q ss_pred             CCceEeccccHHhhcC----------C-----cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          172 GGGAVVRPLNWRFMRQ----------G-----ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       172 ggG~v~~~~~~~~L~~----------g-----~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                      ||++|.+..|+..++.          |     .+|||.+ .....+|+...  ..||.+...  +.+++..+++.++++.
T Consensus       294 GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~-vc~~~~~i~~n--i~r~~~~~~--~~~e~~~~~~~~~~~~  368 (664)
T PTZ00322        294 DGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV-VNNNSETIRRN--VLRAKEMFP--GAPEDFVDRYYEVIEQ  368 (664)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE-eCCCHHHHHHH--HHHHHhcCC--CCHHHHHHHHHHHHHH
Confidence            9999999877654331          2     5899997 66666666432  235555432  2455666889999999


Q ss_pred             HHhhhhhCCeEE
Q 023118          237 RSEAYANADATV  248 (287)
Q Consensus       237 R~~~Y~~ad~~v  248 (287)
                      |.+.|+.++..+
T Consensus       369 ~~~~Ye~~~~~~  380 (664)
T PTZ00322        369 LEAVYKSLNPVT  380 (664)
T ss_pred             HHhhcccCCccc
Confidence            999999877554

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.12  E-value=4.1e-11  Score=107.48  Aligned_cols=56  Identities=25%  Similarity=0.345  Sum_probs=50.3

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |+++|+++.|++. +++++||++.+   |++++|+|+||||||||+++|+|.+.|   +.|.+
T Consensus         1 l~~~~l~~~~~~~-~l~~is~~i~~---Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v   56 (235)
T cd03299           1 LKVENLSKDWKEF-KLKNVSLEVER---GDYFVILGPTGSGKSVLLETIAGFIKP---DSGKI   56 (235)
T ss_pred             CeeEeEEEEeCCc-eeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCC---CceEE
Confidence            4688999999764 89999999999   999999999999999999999999888   55544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=7.1e-11  Score=117.91  Aligned_cols=59  Identities=27%  Similarity=0.340  Sum_probs=54.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       318 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~i~G~~~p---~~G~i  376 (530)
T PRK15064        318 NALEVENLTKGFDNGPLFKNLNLLLEA---GERLAIIGENGVGKTTLLRTLVGELEP---DSGTV  376 (530)
T ss_pred             ceEEEEeeEEeeCCceeecCcEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEE
Confidence            479999999999988899999999999   999999999999999999999999887   55654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=5.5e-11  Score=111.00  Aligned_cols=52  Identities=19%  Similarity=0.200  Sum_probs=50.0

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++.++|+++.|++..+|+++||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus        45 ~l~i~nl~~~~~~~~iL~~is~~i~~---Ge~~~IvG~nGsGKSTLl~~L~Gl~~   96 (305)
T PRK14264         45 KLSVEDLDVYYGDDHALKGVSMDIPE---KSVTALIGPSGCGKSTFLRCLNRMND   96 (305)
T ss_pred             eEEEEEEEEEeCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccc
Confidence            68999999999988899999999999   99999999999999999999999985

>PRK14527 adenylate kinase; Provisional

Probab=99.11  E-value=3.4e-09  Score=92.12  Aligned_cols=166  Identities=21%  Similarity=0.239  Sum_probs=88.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCchhhhhh---hhchhhhhhhHHHHHHH-hhcCC-Ce
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSVAQIFK---ESGEAYFREYESKALQK-LSLVP-QQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i~~~~~---~~g~~~fr~~e~~~l~~-l~~~~-~~  167 (287)
                      +..|+|+||+||||||+++.|+..++...++.|+++..... +.++.....   ..|...-...-..++.+ +...+ ..
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~~   85 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPVR   85 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCc
Confidence            78999999999999999999999999999999999866542 333322111   11111100111222222 22211 22


Q ss_pred             EEecCCceEeccccHHhh----c----C-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-H
Q 023118          168 VVATGGGAVVRPLNWRFM----R----Q-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-R  237 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L----~----~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-R  237 (287)
                      +|-.|  .+-+......+    .    . ..+|||++|.+++.+|+..|...     .....+.. +...+-.+.|.+ -
T Consensus        86 ~VlDG--fpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~-----~~r~dd~~-~~~~~R~~~y~~~~  157 (191)
T PRK14527         86 VIFDG--FPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ-----EGRSDDNE-ETVRRRQQVYREQT  157 (191)
T ss_pred             EEEcC--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc-----CCCCCCCH-HHHHHHHHHHHHHh
Confidence            33333  21111111111    1    1 35799999999999999876421     11111111 111211222222 2


Q ss_pred             Hh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          238 SE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       238 ~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      .|   .|+.-+..+.          ||.+ -++++|.++|...+
T Consensus       158 ~~v~~~y~~~~~~~~----------id~~-~~~~~v~~~i~~~l  190 (191)
T PRK14527        158 QPLVDYYEARGHLKR----------VDGL-GTPDEVYARILKAL  190 (191)
T ss_pred             HHHHHHHHhcCCEEE----------EECC-CCHHHHHHHHHHhh
Confidence            22   4544233332          5765 48999999888764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.11  E-value=4.3e-11  Score=106.52  Aligned_cols=59  Identities=24%  Similarity=0.261  Sum_probs=51.8

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC---CccccchhHH
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD---YTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~---~~fid~d~~i  129 (287)
                      +++++|+++.|..    +++++++||++.+   |++++|+||||||||||+++|+|.+.   +   ++|.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~---~~G~i~   68 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVES---GQVMAILGSSGSGKTTLLDAISGRVEGGGT---TSGQIL   68 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcC---CeEEEEECCCCCCHHHHHHHHhCccCCCCC---CceEEE
Confidence            4679999999953    5799999999999   99999999999999999999999987   5   555543

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.11  E-value=5.7e-11  Score=119.01  Aligned_cols=67  Identities=22%  Similarity=0.364  Sum_probs=58.6

Q ss_pred             cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .++++|++++|++ ..+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++.+
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~---G~~~aivG~sGsGKSTL~~ll~g~~~~---~~G~i~---~~g~~~~~  389 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKR---GELLFLIGGNGSGKSTLAMLLTGLYQP---QSGEIL---LDGKPVTA  389 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEECCC
Confidence            4899999999964 5699999999999   999999999999999999999999988   677664   46766654

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.11  E-value=6.8e-11  Score=107.92  Aligned_cols=54  Identities=15%  Similarity=0.046  Sum_probs=50.9

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+.++++++.|++..+|+++||++++   |++++|+|+||||||||+++|+|.+.|
T Consensus         7 ~~~~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (261)
T PRK14263          7 IVMDCKLDKIFYGNFMAVRDSHVPIRK---NEITGFIGPSGCGKSTVLRSLNRMNDL   60 (261)
T ss_pred             ceEEEEeEEEEeCCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHccccc
Confidence            358899999999998999999999999   999999999999999999999999875

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.11  E-value=6.4e-11  Score=118.20  Aligned_cols=54  Identities=19%  Similarity=0.236  Sum_probs=50.3

Q ss_pred             ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|+.    ..+|+++||++.+   |++++|+||||||||||+++|+|.+.+
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~---Ge~~~iiG~nGsGKSTLl~~i~G~~~~   61 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEA---GETLALVGESGSGKSVTALSILRLLPS   61 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeC---CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            47999999999963    5799999999999   999999999999999999999999976

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.11  E-value=5.5e-11  Score=105.20  Aligned_cols=63  Identities=17%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             EEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           67 ESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        67 ~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      .+.|+.+.|+ ...+++++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~   65 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPT---GQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVH---WSNKNE   65 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEE---ECCccc
Confidence            4678899996 56799999999999   999999999999999999999999987   567654   455544

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.10  E-value=7e-11  Score=119.21  Aligned_cols=67  Identities=27%  Similarity=0.371  Sum_probs=57.5

Q ss_pred             cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .++++|++++|++ ..+|+|+|+++++   |+.++|+|+||||||||+++|+|.+.|   +.|.+.   .+|.++.+
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~---G~~v~IvG~sGsGKSTLl~lL~gl~~p---~~G~I~---i~g~~i~~  401 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKP---GQTVAIVGPTGAGKSTLINLLQRVFDP---QSGRIL---IDGTDIRT  401 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEE---ECCEEhhh
Confidence            4899999999964 5799999999999   999999999999999999999999999   566553   35655544

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.10  E-value=2.7e-09  Score=93.34  Aligned_cols=38  Identities=29%  Similarity=0.495  Sum_probs=34.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      ..|+|+|++||||||+++.|+. +|++++|+|.+..+.+
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~   40 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVV   40 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHh
Confidence            4799999999999999999998 8999999999977665

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=4.7e-11  Score=103.61  Aligned_cols=66  Identities=23%  Similarity=0.298  Sum_probs=58.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      +++.+|++-.-++..+|.++||++.+   |+.+.|.||||||||||+|+|||++.|   ++|.+.   +.|..+.
T Consensus         2 ~L~a~~L~~~R~e~~lf~~L~f~l~~---Ge~~~i~G~NG~GKTtLLRilaGLl~p---~~G~v~---~~~~~i~   67 (209)
T COG4133           2 MLEAENLSCERGERTLFSDLSFTLNA---GEALQITGPNGAGKTTLLRILAGLLRP---DAGEVY---WQGEPIQ   67 (209)
T ss_pred             cchhhhhhhccCcceeecceeEEEcC---CCEEEEECCCCCcHHHHHHHHHcccCC---CCCeEE---ecCCCCc
Confidence            46788998888999999999999999   999999999999999999999999999   788776   4454443

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.10  E-value=6.7e-11  Score=119.22  Aligned_cols=67  Identities=25%  Similarity=0.287  Sum_probs=56.2

Q ss_pred             cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||++.| +++.+|+|+||++++   |+.++|+|+||||||||+++|+|.+ |   +.|.+.   .+|.++.++
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~---G~~vaIvG~SGsGKSTL~~lL~g~~-p---~~G~I~---i~g~~i~~~  416 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPA---GQRIALVGPSGAGKTSLLNALLGFL-P---YQGSLK---INGIELREL  416 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCC-C---CCcEEE---ECCEecccC
Confidence            48999999655 567899999999999   9999999999999999999999999 7   455553   367666554

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.10  E-value=8.6e-11  Score=116.11  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=50.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.
T Consensus       259 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~G~~~  311 (490)
T PRK10938        259 PRIVLNNGVVSYNDRPILHNLSWQVNP---GEHWQIVGPNGAGKSTLLSLITGDHP  311 (490)
T ss_pred             ceEEEeceEEEECCeeEEeeceEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            479999999999988899999999999   99999999999999999999999764

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.10  E-value=5.7e-11  Score=104.82  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=52.8

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++|+++.|+.  .++++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 ~~~~~l~~~~~~--~~~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   62 (213)
T TIGR01277         1 LALDKVRYEYEH--LPMEFDLNVAD---GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIK---VNDQSH   62 (213)
T ss_pred             CeEEeeeEEeCC--cceeeEEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEc
Confidence            468999999974  56899999999   999999999999999999999999988   567654   456544

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.09  E-value=8.9e-11  Score=116.86  Aligned_cols=57  Identities=25%  Similarity=0.384  Sum_probs=51.4

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~  128 (287)
                      ++++|++++|+++.+|+++||++.+   |++++|+||||||||||+++|+|.+  .|   ++|.+
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i   59 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEE---GEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRI   59 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEE
Confidence            4789999999888899999999999   9999999999999999999999997  45   55554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.09  E-value=9.3e-11  Score=105.90  Aligned_cols=59  Identities=29%  Similarity=0.394  Sum_probs=53.5

Q ss_pred             ccEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++++++.|++. .+++++|+++.+   |+.++|+|+||||||||+++|+|++.|.   +|.+
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~---Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v   61 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEK---GERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEV   61 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEE
Confidence            468999999999764 899999999999   9999999999999999999999999994   5554

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.09  E-value=5.4e-11  Score=110.79  Aligned_cols=50  Identities=22%  Similarity=0.209  Sum_probs=44.9

Q ss_pred             EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +.|+++.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         1 k~y~~~~~l~~vs~~i~~---Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i   50 (302)
T TIGR01188         1 KVYGDFKAVDGVNFKVRE---GEVFGFLGPNGAGKTTTIRMLTTLLRP---TSGTA   50 (302)
T ss_pred             CeeCCeeEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            467778899999999999   999999999999999999999999988   55543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.08  E-value=1e-10  Score=117.20  Aligned_cols=67  Identities=27%  Similarity=0.382  Sum_probs=56.8

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .++++|++++|++  ..+|+|+||++++   |++++|+|+||||||||+++|+|.+.|   ++|.+.   .+|.++.+
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~---G~~v~IvG~sGsGKSTLl~lL~gl~~~---~~G~I~---i~g~~i~~  398 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEP---GETVALVGRSGSGKSTLVNLIPRFYEP---DSGQIL---LDGHDLAD  398 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEE---ECCEeHHh
Confidence            4899999999964  5699999999999   999999999999999999999999998   555553   35555443

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.08  E-value=6.4e-11  Score=117.08  Aligned_cols=56  Identities=23%  Similarity=0.227  Sum_probs=50.8

Q ss_pred             EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~---Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~   56 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRP---HSIHALMGENGAGKSTLLKCLFGIYQK---DSGSIL   56 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CceEEE
Confidence            46899999988899999999999   999999999999999999999999987   566553

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.08  E-value=1.1e-10  Score=117.19  Aligned_cols=59  Identities=19%  Similarity=0.314  Sum_probs=54.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       323 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~i~G~~~p---~~G~i  381 (556)
T PRK11819        323 KVIEAENLSKSFGDRLLIDDLSFSLPP---GGIVGIIGPNGAGKSTLFKMITGQEQP---DSGTI  381 (556)
T ss_pred             eEEEEEeEEEEECCeeeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEE
Confidence            479999999999988999999999999   999999999999999999999999877   55554

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.08  E-value=2.3e-10  Score=111.40  Aligned_cols=87  Identities=22%  Similarity=0.309  Sum_probs=67.5

Q ss_pred             cccccccCCCcCCCCCCCccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           46 RHRTLNLVPAHVSKDSNAHDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ....+..-..|..-..+..-++++||++.|+ ++++|+|+||++.|   |+.++|+||||+||||++++|-+....   .
T Consensus       518 ee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~p---GktvAlVG~SGaGKSTimRlLfRffdv---~  591 (790)
T KOG0056|consen  518 EEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQP---GKTVALVGPSGAGKSTIMRLLFRFFDV---N  591 (790)
T ss_pred             cCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecC---CcEEEEECCCCCchhHHHHHHHHHhhc---c
Confidence            3334444445554444555699999999996 68899999999999   999999999999999999999988776   4


Q ss_pred             chhHHHHHhCCCchhhh
Q 023118          125 SDKYVEKLMGGTSVAQI  141 (287)
Q Consensus       125 ~d~~ie~~~~G~~i~~~  141 (287)
                      +|.+.   .+|++|...
T Consensus       592 sGsI~---iDgqdIrnv  605 (790)
T KOG0056|consen  592 SGSIT---IDGQDIRNV  605 (790)
T ss_pred             CceEE---EcCchHHHH
Confidence            66553   367776554

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.08  E-value=6.2e-11  Score=102.71  Aligned_cols=55  Identities=27%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             cCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           75 LDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        75 ~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      |++..+|+++||++.+   |++++|+||||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         2 ~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~   56 (190)
T TIGR01166         2 PGGPEVLKGLNFAAER---GEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVL---IDGEPL   56 (190)
T ss_pred             CCccceecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEE---ECCEEc
Confidence            3566799999999999   999999999999999999999999988   566654   456544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR01351 adk adenylate kinases

Probab=99.08  E-value=5.6e-09  Score=92.14  Aligned_cols=106  Identities=19%  Similarity=0.280  Sum_probs=64.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-----chhhhhhhhchhhhhhhHHHHHH-HhhcC---CCe
Q 023118           97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-----SVAQIFKESGEAYFREYESKALQ-KLSLV---PQQ  167 (287)
Q Consensus        97 i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-----~i~~~~~~~g~~~fr~~e~~~l~-~l~~~---~~~  167 (287)
                      |+|+||+||||||+++.|+..+++.+++.|+++.+.....     .+.++. ..|...--..-..++. .+...   ...
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~-~~g~~vp~~~~~~l~~~~i~~~~~~~~~   80 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYM-EKGELVPDEIVNQLVKERLTQNQDNENG   80 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence            8899999999999999999999999999999987654221     122221 1222110011112222 22221   122


Q ss_pred             EEecCCceEeccccH---Hhhc------CCcEEEEecCHHHHHHHHhhcC
Q 023118          168 VVATGGGAVVRPLNW---RFMR------QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       168 via~ggG~v~~~~~~---~~L~------~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      +|-.|-     |.++   +.|.      -..+|||++|.+++.+|+..|.
T Consensus        81 ~ilDGf-----Prt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        81 FILDGF-----PRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             EEEeCC-----CCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence            333331     2332   2221      2579999999999999998763

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.07  E-value=1.2e-10  Score=116.90  Aligned_cols=68  Identities=24%  Similarity=0.319  Sum_probs=58.1

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|++   +.+|+|+||++++   |+.++|+|+||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~---Ge~i~IvG~sGsGKSTLlklL~gl~~p---~~G~I~---i~g~~i~~~  407 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRP---GETVALVGPSGAGKSTLFQLLLRFYDP---QSGRIL---LDGVDLRQL  407 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEE---ECCEEHHhc
Confidence            4899999999963   5699999999999   999999999999999999999999998   456553   366666544

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14528 adenylate kinase; Provisional

Probab=99.07  E-value=7.5e-09  Score=89.98  Aligned_cols=161  Identities=14%  Similarity=0.192  Sum_probs=88.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCch----hhhhhhhchhhhhhhHHHHH-HHhhcC--CC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSV----AQIFKESGEAYFREYESKAL-QKLSLV--PQ  166 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i----~~~~~~~g~~~fr~~e~~~l-~~l~~~--~~  166 (287)
                      ..|.|+||+||||||+++.|+..+++++++.|+++.... .|..+    ..++ ..|.-.-...-...+ +.+...  ..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~-~~g~lvp~~~~~~~~~~~l~~~~~~~   80 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYM-DAGDLVPDSVVIGIIKDRIREADCKN   80 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHH-hCCCccCHHHHHHHHHHHHhCcCccC
Confidence            468999999999999999999999999999999986654 22221    2221 122111000001111 222221  11


Q ss_pred             eEEecCCceEeccccH------H-hhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118          167 QVVATGGGAVVRPLNW------R-FMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS  234 (287)
Q Consensus       167 ~via~ggG~v~~~~~~------~-~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~  234 (287)
                      .++-.|     .|.+.      . .+.     -..+|||++|.+.+.+|+..|...     .....|..+....++..-.
T Consensus        81 g~viDG-----~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~-----~gr~dd~~e~i~~Rl~~y~  150 (186)
T PRK14528         81 GFLLDG-----FPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI-----EGRADDNEATIKNRLDNYN  150 (186)
T ss_pred             cEEEeC-----CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-----cCCCCCCHHHHHHHHHHHH
Confidence            122222     12222      1 221     257899999999999999875321     1111122222233444433


Q ss_pred             HHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHH
Q 023118          235 KERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQ  277 (287)
Q Consensus       235 ~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~  277 (287)
                      ....|   .|+..+..+.          ||.+ .++++|...|...
T Consensus       151 ~~~~pv~~~y~~~~~~~~----------i~~~-~~~~~v~~~~~~~  185 (186)
T PRK14528        151 KKTLPLLDFYAAQKKLSQ----------VNGV-GSLEEVTSLIQKE  185 (186)
T ss_pred             HHhHHHHHHHHhCCCEEE----------EECC-CCHHHHHHHHHHh
Confidence            34444   5554444442          5655 4899999887654

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.07  E-value=1.1e-10  Score=111.13  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ||++ |++++|++..+  ++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         1 ~l~~-~l~k~~~~~~~--~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~iaGl~~p---~~G~I   55 (352)
T PRK11144          1 MLEL-NFKQQLGDLCL--TVNLTLPA---QGITAIFGRSGAGKTSLINAISGLTRP---QKGRI   55 (352)
T ss_pred             CeEE-EEEEEeCCEEE--EEEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            4677 99999987653  89999999   999999999999999999999999988   56654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.07  E-value=1.3e-10  Score=116.70  Aligned_cols=59  Identities=19%  Similarity=0.303  Sum_probs=54.3

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       321 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p---~~G~i  379 (552)
T TIGR03719       321 KVIEAENLSKGFGDKLLIDDLSFKLPP---GGIVGVIGPNGAGKSTLFRMITGQEQP---DSGTI  379 (552)
T ss_pred             eEEEEeeEEEEECCeeeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCeEE
Confidence            479999999999988899999999999   999999999999999999999999887   45544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.07  E-value=1.1e-10  Score=117.22  Aligned_cols=68  Identities=19%  Similarity=0.324  Sum_probs=59.0

Q ss_pred             cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      .++++|++++|++     ..+|+|+||++++   |+.++|+||||||||||+++|++.+.|   +.|.+.   .+|.++.
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~---G~~~aivG~sGsGKSTl~~ll~g~~~p---~~G~i~---~~g~~i~  407 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQ---GDIVFIVGENGCGKSTLAKLFCGLYIP---QEGEIL---LDGAAVS  407 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEECC
Confidence            4899999999974     2599999999999   999999999999999999999999999   677665   4677665


Q ss_pred             hh
Q 023118          140 QI  141 (287)
Q Consensus       140 ~~  141 (287)
                      ++
T Consensus       408 ~~  409 (555)
T TIGR01194       408 AD  409 (555)
T ss_pred             CC
Confidence            44

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.07  E-value=1.2e-10  Score=116.49  Aligned_cols=68  Identities=21%  Similarity=0.285  Sum_probs=58.3

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|++  +.+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~---~~g~~i~~~  385 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQA---GEALAIIGPSGSGKSTLARLIVGIWPP---TSGSVR---LDGADLKQW  385 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEehhhC
Confidence            5999999999953  5799999999999   999999999999999999999999988   566554   367666543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.06  E-value=1.3e-10  Score=119.49  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=58.3

Q ss_pred             cEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|+  +..+|+++||++++   |+.++|+|+||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~---G~~vaivG~sGsGKSTL~~ll~g~~~p---~~G~I~---idg~~i~~~  524 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKP---GEFIGIVGPSGSGKSTLTKLLQRLYTP---QHGQVL---VDGVDLAIA  524 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEehhhC
Confidence            489999999995  35699999999999   999999999999999999999999998   566654   466666543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.06  E-value=2.3e-10  Score=116.56  Aligned_cols=54  Identities=19%  Similarity=0.183  Sum_probs=50.4

Q ss_pred             ccEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|+    +..+|+++||++.+   |++++|+|+||||||||+++|+|.+.|
T Consensus        11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~---Ge~~~lvG~nGsGKSTLl~~l~Gll~p   68 (623)
T PRK10261         11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQR---GETLAIVGESGSGKSVTALALMRLLEQ   68 (623)
T ss_pred             ceEEEeceEEEecCCCCceeEEEeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence            4799999999996    35799999999999   999999999999999999999999987

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.05  E-value=3.4e-09  Score=91.35  Aligned_cols=107  Identities=21%  Similarity=0.261  Sum_probs=64.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-----chhhhhhhhchhhhhhhHHHHHHH-hhcCCCeEE
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-----SVAQIFKESGEAYFREYESKALQK-LSLVPQQVV  169 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-----~i~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~vi  169 (287)
                      +|+|+|++||||||+++.|+..++..+++.|+++.+...+.     .+.+++.. |...-......++.. +....    
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~----   75 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPD----   75 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhccc----
Confidence            38999999999999999999999999999999986654221     22222211 221111111222222 22211    


Q ss_pred             ecCCceEec--cccH---Hhh----c----CCcEEEEecCHHHHHHHHhhcC
Q 023118          170 ATGGGAVVR--PLNW---RFM----R----QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       170 a~ggG~v~~--~~~~---~~L----~----~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                       .+.|.|.+  |.+.   ..+    .    ...+|||++|.+++.+|+..+.
T Consensus        76 -~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  126 (194)
T cd01428          76 -CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR  126 (194)
T ss_pred             -ccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence             12233332  1221   112    1    2578999999999999998875

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.05  E-value=1.4e-10  Score=118.16  Aligned_cols=60  Identities=20%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             ccEEEcceEEEcC-----------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLD-----------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~-----------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++.|+           ...+|+++||+|.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~lvG~nGsGKSTLlk~i~Gl~~p---~~G~I~  382 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWP---GETLSLVGESGSGKSTTGRALLRLVES---QGGEII  382 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCcEEE
Confidence            4799999999996           14699999999999   999999999999999999999999987   455553

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.7e-10  Score=113.34  Aligned_cols=67  Identities=25%  Similarity=0.395  Sum_probs=59.0

Q ss_pred             cEEEcceEEEcCCee-eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDGKW-LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~-il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||++.|++++ +|+++||+|++   |+.++|+|+|||||||++|+|-+.+.+   ++..++    +|+++.++
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~k---GekVaIvG~nGsGKSTilr~LlrF~d~---sG~I~I----dG~dik~~  418 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPK---GEKVAIVGSNGSGKSTILRLLLRFFDY---SGSILI----DGQDIKEV  418 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecC---CCEEEEECCCCCCHHHHHHHHHHHhcc---CCcEEE----CCeeHhhh
Confidence            399999999999766 99999999999   999999999999999999999998875   444445    78888776

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.05  E-value=9.9e-11  Score=116.23  Aligned_cols=61  Identities=15%  Similarity=0.077  Sum_probs=53.2

Q ss_pred             ccEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .+++++|+++.|+   +..+++++||++.+   |++++|+|+||||||||+++|+|.+.|+  ++|.+.
T Consensus       258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--~~G~i~  321 (506)
T PRK13549        258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRR---GEILGIAGLVGAGRTELVQCLFGAYPGR--WEGEIF  321 (506)
T ss_pred             ceEEEecCccccccccccccccceeeEEcC---CcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCcEEE
Confidence            4799999999993   45799999999999   9999999999999999999999998743  455543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.04  E-value=1.7e-10  Score=97.39  Aligned_cols=69  Identities=22%  Similarity=0.243  Sum_probs=60.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++.++||+...+++.+|-++|++|.+   |+++.|+||||||||||+..++|.+.+.|--+|.+.   .+++.+.
T Consensus         2 ~l~l~nvsl~l~g~cLLa~~n~Tia~---GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~---l~~~~l~   70 (213)
T COG4136           2 MLCLKNVSLRLPGSCLLANVNFTIAK---GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELW---LNEQRLD   70 (213)
T ss_pred             ceeeeeeeecCCCceEEEeeeEEecC---CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEE---ECCeecc
Confidence            57899999999999999999999999   999999999999999999999999999987777664   3454443

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.04  E-value=1.2e-08  Score=91.90  Aligned_cols=109  Identities=18%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCchhhhh---hhhch----hhhhhhHHHHHHHhhc-C
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSVAQIF---KESGE----AYFREYESKALQKLSL-V  164 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i~~~~---~~~g~----~~fr~~e~~~l~~l~~-~  164 (287)
                      ...|+|+||+||||||+++.||..+++.++++|+++.+... +.++....   ...|.    +..-..-.+.+.++.. .
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~   85 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDC   85 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcccc
Confidence            35699999999999999999999999999999999977652 22332221   11221    2222122222222111 1


Q ss_pred             CCeEEecCCceEeccccHH---hhc----CCcEEEEecCHHHHHHHHhhc
Q 023118          165 PQQVVATGGGAVVRPLNWR---FMR----QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       165 ~~~via~ggG~v~~~~~~~---~L~----~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      ...++-.|     .|.+..   .|.    -..+|+|++|.+.+.+|+..|
T Consensus        86 ~~g~iLDG-----fPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R  130 (229)
T PTZ00088         86 FKGFILDG-----FPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGR  130 (229)
T ss_pred             CceEEEec-----CCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcC
Confidence            12222222     133322   222    257899999999999999876

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.04  E-value=1.7e-10  Score=116.60  Aligned_cols=66  Identities=23%  Similarity=0.268  Sum_probs=56.4

Q ss_pred             cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      .++++|++++|++ ..+++++||++++   |+.++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++.
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~---~~g~~~~  400 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKA---GQTVAIVGPTGAGKTTLINLLQRVYDP---TVGQIL---IDGIDIN  400 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHccCCCC---CCCEEE---ECCEEhh
Confidence            5899999999975 5799999999999   999999999999999999999999988   566553   3454443

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.04  E-value=1.9e-10  Score=115.84  Aligned_cols=66  Identities=17%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      .+++++++++|+.  ..+|+++||++++   |++++|+||||||||||+++|+|.+.|   +.|.+.   .+|.++.
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~---G~~~~ivG~sGsGKSTLl~ll~g~~~p---~~G~i~---~~g~~~~  380 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKP---GQMLGICGPTGSGKSTLLSLIQRHFDV---SEGDIR---FHDIPLT  380 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEE---ECCEEHh
Confidence            4899999999963  5699999999999   999999999999999999999999988   566553   3455443

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.04  E-value=1.7e-11  Score=107.49  Aligned_cols=60  Identities=25%  Similarity=0.295  Sum_probs=56.5

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +.+..+|+.|+|+.+.+++++||++++   |++++|.||||+||||..-++.|+..|   |+|.++
T Consensus         3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~---GEiVGLLGPNGAGKTT~Fymi~Glv~~---d~G~i~   62 (243)
T COG1137           3 STLVAENLAKSYKKRKVVNDVSLEVNS---GEIVGLLGPNGAGKTTTFYMIVGLVRP---DSGKIL   62 (243)
T ss_pred             cEEEehhhhHhhCCeeeeeeeeEEEcC---CcEEEEECCCCCCceeEEEEEEEEEec---CCceEE
Confidence            468999999999999999999999999   999999999999999999999999999   788774

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.04  E-value=1e-08  Score=90.32  Aligned_cols=37  Identities=32%  Similarity=0.561  Sum_probs=32.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      .|+|+|.+||||||+++.|+. +|..++|+|.+..+.+
T Consensus         3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~   39 (200)
T PRK14734          3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIV   39 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHH
Confidence            699999999999999999997 7999999998754443

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.04  E-value=2.6e-10  Score=107.81  Aligned_cols=54  Identities=20%  Similarity=0.181  Sum_probs=49.5

Q ss_pred             ccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++|++++|.  ...+|+++||++.+   |++++|+|++|||||||+++|+|...+
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~---Ge~v~IvG~~GsGKSTLl~~L~g~~~~  134 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKR---NKVTAFIGPSGCGKSTFLRNLNQLNDL  134 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccccc
Confidence            3799999999995  45799999999999   999999999999999999999998753

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.04  E-value=1.2e-10  Score=115.45  Aligned_cols=61  Identities=15%  Similarity=0.096  Sum_probs=53.1

Q ss_pred             ccEEEcceEEEc---CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSL---DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~---~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .+++++|+++.|   ++..+++++||++.+   |++++|+||||||||||+++|+|.+.|+  ++|.+.
T Consensus       256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~  319 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRKRVDDVSFSLRR---GEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVF  319 (500)
T ss_pred             ceEEEeCCcccccccccccccccceeEEeC---CcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEE
Confidence            479999999999   346799999999999   9999999999999999999999999853  455543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.7e-10  Score=112.88  Aligned_cols=68  Identities=19%  Similarity=0.237  Sum_probs=59.9

Q ss_pred             cEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .+..+|+++.|++. ++++++||++++   |+.++|+|+||||||||+++|+|.+.+   +.|.+.   ++|.++.++
T Consensus       320 ei~~~~l~~~y~~g~~~l~~l~~t~~~---g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~---vng~~l~~l  388 (559)
T COG4988         320 EISLENLSFRYPDGKPALSDLNLTIKA---GQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIR---VNGIDLRDL  388 (559)
T ss_pred             eeeecceEEecCCCCcccCCceeEecC---CcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEE---ECCcccccc
Confidence            45667999999754 899999999999   999999999999999999999999998   677775   578877766

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.03  E-value=2.4e-10  Score=113.85  Aligned_cols=61  Identities=21%  Similarity=0.236  Sum_probs=53.5

Q ss_pred             CccEEEcceEEEcC-----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           63 AHDVESGTFCDSLD-----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        63 ~~~l~~~~l~~~~~-----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .++++++|+++.|+     ...+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~Gl~~p---~~G~i~  342 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKE---GEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVN  342 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE
Confidence            34799999999994     25799999999999   999999999999999999999999987   455543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK08118 topology modulation protein; Reviewed

Probab=99.03  E-value=2.7e-09  Score=91.34  Aligned_cols=96  Identities=20%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      ..|.|+||+||||||+++.|+..++.++++.|.++... +....       .    +......++++...+. .|-.|..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-~w~~~-------~----~~~~~~~~~~~~~~~~-wVidG~~   68 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-NWEGV-------P----KEEQITVQNELVKEDE-WIIDGNY   68 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-CCcCC-------C----HHHHHHHHHHHhcCCC-EEEeCCc
Confidence            46999999999999999999999999999999887221 01111       0    1112223444444444 4445531


Q ss_pred             eEeccccH-Hhhc-CCcEEEEecCHHHHHHHHhhc
Q 023118          175 AVVRPLNW-RFMR-QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       175 ~v~~~~~~-~~L~-~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      .    ..+ ..+. ...+|||++|.+.+..|+..|
T Consensus        69 ~----~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R   99 (167)
T PRK08118         69 G----GTMDIRLNAADTIIFLDIPRTICLYRAFKR   99 (167)
T ss_pred             c----hHHHHHHHhCCEEEEEeCCHHHHHHHHHHH
Confidence            1    111 1222 378999999999999998765

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.03  E-value=2.1e-10  Score=113.61  Aligned_cols=67  Identities=22%  Similarity=0.290  Sum_probs=58.3

Q ss_pred             CCccEEEcceEEEcCC-----------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHH
Q 023118           62 NAHDVESGTFCDSLDG-----------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVE  130 (287)
Q Consensus        62 ~~~~l~~~~l~~~~~~-----------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie  130 (287)
                      ..++++++|+++.|..           ..+++++||++.+   |++++|||.|||||||++|+|+|++.|   ++|.++ 
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~---GE~lglVGeSGsGKSTlar~i~gL~~P---~~G~i~-  349 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE---GETLGLVGESGSGKSTLARILAGLLPP---SSGSII-  349 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE-
Confidence            4468999999999972           3689999999999   999999999999999999999999999   677765 


Q ss_pred             HHhCCCc
Q 023118          131 KLMGGTS  137 (287)
Q Consensus       131 ~~~~G~~  137 (287)
                        +.|.+
T Consensus       350 --~~g~~  354 (539)
T COG1123         350 --FDGQD  354 (539)
T ss_pred             --EeCcc
Confidence              45654

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.03  E-value=2.7e-10  Score=105.47  Aligned_cols=57  Identities=25%  Similarity=0.371  Sum_probs=50.5

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ..++++|+++.  ...+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus        38 ~~l~i~nls~~--~~~vL~~vs~~i~~---Ge~~~liG~NGsGKSTLl~~I~Gl~~p---~~G~I   94 (282)
T cd03291          38 NNLFFSNLCLV--GAPVLKNINLKIEK---GEMLAITGSTGSGKTSLLMLILGELEP---SEGKI   94 (282)
T ss_pred             CeEEEEEEEEe--cccceeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence            46999999986  46799999999999   999999999999999999999999887   45543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.03  E-value=2.8e-10  Score=95.65  Aligned_cols=62  Identities=23%  Similarity=0.327  Sum_probs=53.3

Q ss_pred             EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++.|.+..+++++++++.+   |++++|+|+||||||||+++|++.+.+   +.|.+.   ++|..+
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~---g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~---~~~~~~   63 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKA---GEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEIL---IDGKDI   63 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEE---ECCEEc
Confidence            57899999888899999999999   999999999999999999999999987   566554   345443

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.03  E-value=2.2e-10  Score=105.74  Aligned_cols=51  Identities=24%  Similarity=0.322  Sum_probs=47.8

Q ss_pred             EEEcceEEEc--CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           66 VESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        66 l~~~~l~~~~--~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++|+++.|  +...+|+++||+|.+   |++++|+|++|||||||+++|++.+.
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~---Ge~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISP---GQRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhhhcC
Confidence            7899999999  456799999999999   99999999999999999999999985

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.03  E-value=1.6e-10  Score=115.32  Aligned_cols=59  Identities=22%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             ccEEEcceEEEcC-----------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLD-----------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~-----------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++.|+           +..+|+++||++.+   |++++|+||||||||||+++|+|.+ +   ++|.+.
T Consensus       274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLlk~l~Gl~-~---~~G~i~  343 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRP---GETLGLVGESGSGKSTTGLALLRLI-N---SQGEIW  343 (529)
T ss_pred             CcccccCcEEEeecCccccccccccceeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHhCcC-C---CCcEEE
Confidence            4799999999995           35799999999999   9999999999999999999999987 3   355543

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.02  E-value=2.1e-10  Score=103.21  Aligned_cols=47  Identities=26%  Similarity=0.390  Sum_probs=43.8

Q ss_pred             CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ...++|+|+||++.+   |+.++|+|+||||||||+|+|||.+.|   |+|.+
T Consensus        38 ~~~~aL~disf~i~~---Ge~vGiiG~NGaGKSTLlkliaGi~~P---t~G~v   84 (249)
T COG1134          38 AEFWALKDISFEIYK---GERVGIIGHNGAGKSTLLKLIAGIYKP---TSGKV   84 (249)
T ss_pred             ceEEEecCceEEEeC---CCEEEEECCCCCcHHHHHHHHhCccCC---CCceE
Confidence            356899999999999   999999999999999999999999999   78876

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.02  E-value=1.1e-08  Score=90.49  Aligned_cols=162  Identities=16%  Similarity=0.206  Sum_probs=93.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-chhhhhhhhchhhh---------------hhhHH-HH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-SVAQIFKESGEAYF---------------REYES-KA  157 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-~i~~~~~~~g~~~f---------------r~~e~-~~  157 (287)
                      -.|+|+|..||||||+++.++..+|.+++|+|.+..+.+... -+..++...|.+.+               ...+. ..
T Consensus         7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~~   86 (204)
T PRK14733          7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKKW   86 (204)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHHH
Confidence            479999999999999999999989999999999987776332 23445555555544               11110 01


Q ss_pred             H-------------HHhhcCC-CeEEecCCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcch
Q 023118          158 L-------------QKLSLVP-QQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADS  222 (287)
Q Consensus       158 l-------------~~l~~~~-~~via~ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~  222 (287)
                      +             +.+.... ..++......  .+..+..-. =..+|++++|.+.+.+|+..|.+-.           
T Consensus        87 Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL--~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s-----------  153 (204)
T PRK14733         87 LEDYLHPVINKEIKKQVKESDTVMTIVDIPLL--GPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKN-----------  153 (204)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCCCeEEEEechh--hhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCC-----------
Confidence            1             1111111 1121111110  011110000 1468999999999999998764211           


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          223 YTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       223 ~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                      .+++..++...+. .+..-+.||++|            |+++.+.++.-.++.+.+++.+
T Consensus       154 ~~~a~~ri~~Q~~-~eek~~~aD~VI------------~N~g~~~~~l~~~~~~~~~~~~  200 (204)
T PRK14733        154 RQQAVAFINLQIS-DKEREKIADFVI------------DNTELTDQELESKLITTINEIT  200 (204)
T ss_pred             HHHHHHHHHhCCC-HHHHHHhCCEEE------------ECcCCCHHHHHHHHHHHHHHHH
Confidence            1122233322221 122223488875            6777688998888888887653

>PLN02459 probable adenylate kinase

Probab=99.02  E-value=1.3e-08  Score=93.08  Aligned_cols=109  Identities=18%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHH-HhhcCCCeE
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQ-KLSLVPQQV  168 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~-~l~~~~~~v  168 (287)
                      .+|+|+||+||||||+++.|+..+++.++++|+++.+.. .+..    +..+. ..|.-.=-..-..+++ ++.....  
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~-~~G~lVPdeiv~~ll~~~l~~~~~--  106 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIV-NQGKLVPDEIIFSLLSKRLEAGEE--  106 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHH-HcCCccCHHHHHHHHHHHHhcccc--
Confidence            568899999999999999999999999999999986654 2222    22221 2222111111112222 2221100  


Q ss_pred             EecCCceEec--cccHH---hhc---C-CcEEEEecCHHHHHHHHhhc
Q 023118          169 VATGGGAVVR--PLNWR---FMR---Q-GITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       169 ia~ggG~v~~--~~~~~---~L~---~-g~~I~L~~~~e~l~~Ri~~~  207 (287)
                       ....|.+++  |.+..   .|.   . ..+|+|++|.+++.+|+..|
T Consensus       107 -~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR  153 (261)
T PLN02459        107 -EGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGR  153 (261)
T ss_pred             -cCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhcc
Confidence             011233332  44432   222   2 67999999999999999876

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.01  E-value=3.4e-10  Score=113.01  Aligned_cols=63  Identities=25%  Similarity=0.306  Sum_probs=56.3

Q ss_pred             CCCccEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           61 SNAHDVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        61 ~~~~~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .+..+++++|+++.|++ +.+++++||.+.+   |++|+|+||||+|||||+|+|++.+++   ++|.+.
T Consensus       317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~---g~riaiiG~NG~GKSTLlk~l~g~~~~---~~G~v~  380 (530)
T COG0488         317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDR---GDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVK  380 (530)
T ss_pred             CCCeeEEEeccccccCCCceeecCceEEecC---CCEEEEECCCCCCHHHHHHHHhhhccc---CCceEE
Confidence            44568999999999965 6899999999999   999999999999999999999999998   466553

>TIGR00152 dephospho-CoA kinase

Probab=99.01  E-value=7e-09  Score=89.91  Aligned_cols=38  Identities=34%  Similarity=0.575  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      .|+|+|.+||||||+++.|+...+++++|+|.+..+.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~   38 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVV   38 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHH
Confidence            38999999999999999999987799999999976655

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.00  E-value=2.2e-08  Score=85.55  Aligned_cols=167  Identities=16%  Similarity=0.199  Sum_probs=104.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc-CCccccchhHHHH---HhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYVEK---LMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVA  170 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l-~~~fid~d~~ie~---~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via  170 (287)
                      ..++|+|.+|+||||+++.+.+.+ ....+..|++.-+   ..+.....+..+..-.+..+....++.+.+..+...++.
T Consensus         5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iiv   84 (189)
T COG2019           5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIV   84 (189)
T ss_pred             eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEE
Confidence            689999999999999999999999 7777888877322   222223333333444555566666667776665543444


Q ss_pred             cCCceEecccc---------HHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH-HHHhh
Q 023118          171 TGGGAVVRPLN---------WRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK-ERSEA  240 (287)
Q Consensus       171 ~ggG~v~~~~~---------~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~-~R~~~  240 (287)
                      .+.+++-.|..         ...|...++|.|.++|+.++.|-.++....|+....          +++.+..+ .|...
T Consensus        85 DtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~----------e~i~eHqe~nR~aA  154 (189)
T COG2019          85 DTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESV----------EEIREHQEMNRAAA  154 (189)
T ss_pred             eccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccH----------HHHHHHHHHHHHHH
Confidence            44444433321         233445788999999999888866554455654331          33333333 34444


Q ss_pred             hhh---CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          241 YAN---ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       241 Y~~---ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      |..   ..++|.         ++...+-.|++.+.+|+..|+.
T Consensus       155 ~a~A~~~gatVk---------IV~n~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         155 MAYAILLGATVK---------IVENHEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             HHHHHHhCCeEE---------EEeCCCCCHHHHHHHHHHHHhc
Confidence            332   345553         2556677999999999988763

>PLN03073 ABC transporter F family; Provisional

Probab=99.00  E-value=3.8e-10  Score=116.58  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=53.4

Q ss_pred             ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|+ ...+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~---Ge~i~LvG~NGsGKSTLLk~L~Gll~p---~~G~I  566 (718)
T PLN03073        507 PIISFSDASFGYPGGPLLFKNLNFGIDL---DSRIAMVGPNGIGKSTILKLISGELQP---SSGTV  566 (718)
T ss_pred             ceEEEEeeEEEeCCCCeeEeccEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCceE
Confidence            5799999999996 45799999999999   999999999999999999999999988   55554

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.00  E-value=1.8e-10  Score=99.38  Aligned_cols=61  Identities=21%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .+.+.+.++++.|+...-.+++||++.|   |+..+|+|.||||||||++.|++.+.|   |.|.+.
T Consensus         4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~P---GeVLgiVGESGSGKtTLL~~is~rl~p---~~G~v~   64 (258)
T COG4107           4 KPLLSVSGLSKLYGPGKGCRDVSFDLYP---GEVLGIVGESGSGKTTLLKCISGRLTP---DAGTVT   64 (258)
T ss_pred             CcceeehhhhhhhCCCcCccccceeecC---CcEEEEEecCCCcHHhHHHHHhcccCC---CCCeEE
Confidence            4689999999999998899999999999   999999999999999999999999999   777664

>PRK14529 adenylate kinase; Provisional

Probab=99.00  E-value=1.7e-08  Score=90.49  Aligned_cols=106  Identities=19%  Similarity=0.299  Sum_probs=66.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCch----hhhhhhhchhhhhhhHHHHHHH-hhcCCCeEE
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSV----AQIFKESGEAYFREYESKALQK-LSLVPQQVV  169 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i----~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~vi  169 (287)
                      +|+|+||+||||||+++.|+..++..++++|+++.+... |..+    .++. ..|.-..-+.-..++.+ +....    
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~----   76 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDG----   76 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccC----
Confidence            589999999999999999999999999999999876542 2222    2222 23333322222233332 22211    


Q ss_pred             ecCCceEec--cccHH-------hhc-----CCcEEEEecCHHHHHHHHhhcC
Q 023118          170 ATGGGAVVR--PLNWR-------FMR-----QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       170 a~ggG~v~~--~~~~~-------~L~-----~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                        ..|.+++  |.+..       .+.     -..+|+|++|.+++.+|+..|.
T Consensus        77 --~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~  127 (223)
T PRK14529         77 --KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR  127 (223)
T ss_pred             --CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence              1233332  33322       121     1578999999999999999863

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.00  E-value=2e-10  Score=114.16  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=54.7

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|+++.|+  .+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus       264 ~~l~~~~l~~~~~--~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---~~G~I~---~~g~~~  327 (510)
T PRK09700        264 TVFEVRNVTSRDR--KKVRDISFSVCR---GEILGFAGLVGSGRTELMNCLFGVDKR---AGGEIR---LNGKDI  327 (510)
T ss_pred             cEEEEeCccccCC--CcccceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCcC---CCCeEE---ECCEEC
Confidence            4799999998874  389999999999   999999999999999999999999988   566664   345443

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.00  E-value=3e-10  Score=108.19  Aligned_cols=51  Identities=22%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             ceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           70 TFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        70 ~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |++++|++..+  ++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~l~~~~~~~~~--~isl~i~~---Gei~~l~G~nGsGKSTLl~~iaGl~~p---~~G~I   54 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPG---QGVTAIFGRSGSGKTTLIRLIAGLTRP---DEGEI   54 (354)
T ss_pred             EEEEEECCEEE--EEEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            78999987664  89999999   999999999999999999999999987   56654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.00  E-value=3e-10  Score=101.99  Aligned_cols=51  Identities=27%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +.|+...+|+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus        29 ~~~~~~~il~~vs~~i~~---Ge~~~i~G~NGsGKSTLl~~i~Gl~~p---~~G~i~   79 (236)
T cd03267          29 RKYREVEALKGISFTIEK---GEIVGFIGPNGAGKTTTLKILSGLLQP---TSGEVR   79 (236)
T ss_pred             cccCCeeeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEE
Confidence            677888899999999999   999999999999999999999999988   566554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.00  E-value=1.1e-09  Score=111.72  Aligned_cols=156  Identities=17%  Similarity=0.200  Sum_probs=94.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      +..|.+.|++||||||+++.|+..+     ++.|+|+|.+-.....+....+   ......++.. .++.+.+......|
T Consensus       460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~---~~r~~~~~~l-~~~a~~~~~~G~~V  535 (632)
T PRK05506        460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSD---ADRVENIRRV-AEVARLMADAGLIV  535 (632)
T ss_pred             cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCH---HHHHHHHHHH-HHHHHHHHhCCCEE
Confidence            7899999999999999999999886     3578999987633222211111   1112222222 11222222222223


Q ss_pred             EecCCceEeccccHHh----hcC-C-cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118          169 VATGGGAVVRPLNWRF----MRQ-G-ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA  242 (287)
Q Consensus       169 ia~ggG~v~~~~~~~~----L~~-g-~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~  242 (287)
                      +.. ... .....++.    +.+ + .+|||++|++.+.+|.      .||++.....       +.+..++..|.++|.
T Consensus       536 ivd-a~~-~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~------~r~L~~~~~~-------~~l~~l~~~r~~y~~  600 (632)
T PRK05506        536 LVS-FIS-PFREERELARALHGEGEFVEVFVDTPLEVCEARD------PKGLYAKARA-------GEIKNFTGIDSPYEA  600 (632)
T ss_pred             EEE-CCC-CCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC------Ccchhhhccc-------cccccccccccCCCC
Confidence            332 111 11122222    222 3 6799999999999992      3787753221       235566777888553


Q ss_pred             -h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          243 -N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       243 -~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                       . ++++            ||+++.++++++++|++++..
T Consensus       601 P~~a~~~------------Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        601 PENPELR------------LDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             CCCCeEE------------EeCCCCCHHHHHHHHHHHHHH
Confidence             3 5665            488889999999999999864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.99  E-value=1.7e-09  Score=94.28  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc---CCccccchhHH
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL---DYTFADSDKYV  129 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d~~i  129 (287)
                      .|+|+|++||||||+++.|++.+   ...++..|.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            48999999999999999999987   24456666654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PLN03073 ABC transporter F family; Provisional

Probab=98.99  E-value=5.4e-10  Score=115.50  Aligned_cols=52  Identities=29%  Similarity=0.332  Sum_probs=49.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+|.++|++++|++..+|+++||+|.+   |++++|||+||||||||+++|+|..
T Consensus       176 ~~I~i~nls~~y~~~~ll~~isl~i~~---Ge~~gLvG~NGsGKSTLLr~l~g~~  227 (718)
T PLN03073        176 KDIHMENFSISVGGRDLIVDASVTLAF---GRHYGLVGRNGTGKTTFLRYMAMHA  227 (718)
T ss_pred             eeEEEceEEEEeCCCEEEECCEEEECC---CCEEEEECCCCCCHHHHHHHHcCCC
Confidence            479999999999988899999999999   9999999999999999999999854

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.98  E-value=2e-10  Score=109.92  Aligned_cols=50  Identities=22%  Similarity=0.391  Sum_probs=45.2

Q ss_pred             EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |.|+++.+++|+||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         1 ~~~~~~~~l~~vs~~i~~---Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I   50 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAK---GEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQI   50 (363)
T ss_pred             CccCCceeEEeeEEEEcC---CCEEEEECCCCChHHHHHHHHhCCCCC---CceEE
Confidence            467888899999999999   999999999999999999999999988   45544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.98  E-value=2.9e-08  Score=87.85  Aligned_cols=37  Identities=27%  Similarity=0.467  Sum_probs=32.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL  132 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~  132 (287)
                      -.|+|+|++||||||++++|++ +|+..+|+|.+..+.
T Consensus         6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~   42 (208)
T PRK14731          6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKEL   42 (208)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHH
Confidence            4689999999999999999997 899999999775444

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.97  E-value=6.5e-10  Score=110.56  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=53.0

Q ss_pred             ccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|++   +.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   +.|.+
T Consensus        20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~---GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI   81 (549)
T PRK13545         20 PFDKLKDLFFRSKDGEYHYALNNISFEVPE---GEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTV   81 (549)
T ss_pred             ceeEEEEEEEecCCCccceEEeeeEEEEeC---CCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            47999999999976   4699999999999   999999999999999999999999987   45544

>PLN03232 ABC transporter C family member; Provisional

Probab=98.96  E-value=4.9e-10  Score=123.92  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=59.7

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||+++|+.  .++|+|+||++++   |+.|+|+|++|||||||+++|.+.+.|   +.|.+.   .+|.++.++
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~---GekvaIVG~SGSGKSTL~~lL~rl~~p---~~G~I~---IdG~di~~i 1303 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSP---SEKVGVVGRTGAGKSSMLNALFRIVEL---EKGRIM---IDDCDVAKF 1303 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcC---CCceEE---ECCEEhhhC
Confidence            5999999999953  4799999999999   999999999999999999999999999   567664   477777655

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.96  E-value=4.9e-10  Score=118.95  Aligned_cols=68  Identities=29%  Similarity=0.424  Sum_probs=57.8

Q ss_pred             ccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ..++++||+|+|..   ..+|+++||.+++   |+.++|||||||||||+.++|.+.+.|   +.|.+.   .+|.++.+
T Consensus       349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~---G~~valVG~SGsGKST~i~LL~RfydP---~~G~V~---idG~di~~  419 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPS---GQTVALVGPSGSGKSTLIQLLARFYDP---TSGEVL---IDGEDIRN  419 (1228)
T ss_pred             cceEEEEEEecCCCCCcchhhCCeEEEeCC---CCEEEEECCCCCCHHHHHHHHHHhcCC---CCceEE---EcCccchh
Confidence            36999999999974   4699999999999   999999999999999999999999999   455553   34555544

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.96  E-value=6.2e-10  Score=122.74  Aligned_cols=53  Identities=25%  Similarity=0.150  Sum_probs=49.9

Q ss_pred             cEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .++++||+|+|.   +.++|+++||++++   |++++|+|+||||||||+++|.+.+.|
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~---G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDS---KKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcC---CCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            499999999995   35799999999999   999999999999999999999999988

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.96  E-value=5.5e-10  Score=101.92  Aligned_cols=53  Identities=28%  Similarity=0.285  Sum_probs=47.1

Q ss_pred             cceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           69 GTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        69 ~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+.. .+++++++ +.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~---Ge~~~IvG~nGsGKSTLlk~l~Gl~~p---~~G~I   57 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PRE---GQVLGLVGPNGIGKSTALKILAGKLKP---NLGKF   57 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CCceE
Confidence            4788999765 59999994 889   999999999999999999999999998   57765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.95  E-value=5.3e-08  Score=83.56  Aligned_cols=23  Identities=39%  Similarity=0.663  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|.|++||||||+++.|++.+
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l   24 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERL   24 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999988

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.95  E-value=6.9e-10  Score=97.89  Aligned_cols=60  Identities=18%  Similarity=0.195  Sum_probs=49.8

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +.. +|+++|+++.+  |+||++.+    ++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         2 ~~~-~l~~~~~~~~~--~vsl~i~~----e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   61 (214)
T cd03297           2 LCV-DIEKRLPDFTL--KIDFDLNE----EVTGIFGASGAGKSTLLRCIAGLEKP---DGGTIV---LNGTVL   61 (214)
T ss_pred             cee-eeeEecCCeee--CceEEEcc----eeEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEec
Confidence            344 89999998766  99999984    89999999999999999999999987   566654   355544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.95  E-value=3.7e-09  Score=86.62  Aligned_cols=110  Identities=23%  Similarity=0.263  Sum_probs=65.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh-hhhhchhhhhhhHHHHHHHh-hcCCCeEEecCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI-FKESGEAYFREYESKALQKL-SLVPQQVVATGG  173 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~-~~~~g~~~fr~~e~~~l~~l-~~~~~~via~gg  173 (287)
                      .|.++||+||||||+++.|++.+++.+++.|.+..... +...... +...........-...++.. ......|+..+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~   79 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLA-GEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN   79 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHC-CSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHc-ccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc
Confidence            47899999999999999999999999999999987665 3221111 00011111222222334333 333333443222


Q ss_pred             ceEeccccHHhh----c-CC---cEEEEecCHHHHHHHHhhcCC
Q 023118          174 GAVVRPLNWRFM----R-QG---ITVFLNVPLDALARRIAAVGT  209 (287)
Q Consensus       174 G~v~~~~~~~~L----~-~g---~~I~L~~~~e~l~~Ri~~~~~  209 (287)
                         .....+..+    + .|   .+|||++|.+++.+|+..|..
T Consensus        80 ---~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~  120 (143)
T PF13671_consen   80 ---LSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR  120 (143)
T ss_dssp             ----SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred             ---CCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence               222333222    2 24   579999999999999988753

...

>PLN03130 ABC transporter C family member; Provisional

Probab=98.95  E-value=5.7e-10  Score=124.06  Aligned_cols=68  Identities=13%  Similarity=0.251  Sum_probs=58.5

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||+++|..  ..+|+|+||++++   |++|+|+|++|||||||+++|.+.+.|   +.|.+.   .+|.++.++
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~---GekVaIVGrSGSGKSTLl~lL~rl~~p---~~G~I~---IDG~dI~~i 1306 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISP---SEKVGIVGRTGAGKSSMLNALFRIVEL---ERGRIL---IDGCDISKF 1306 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCcCCC---CCceEE---ECCEecccC
Confidence            5999999999963  4699999999999   999999999999999999999999998   566654   366666543

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.95  E-value=6.2e-10  Score=103.65  Aligned_cols=69  Identities=19%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC-C-ccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD-Y-TFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~-~-~fid~d~~ie~~~~G~~i  138 (287)
                      +++++||+..|..    ..+++|+||++.+   |++++|||.|||||||+++.|.+++. + ..+.+|.++   ++|.++
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~---GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~---f~g~~l   74 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKK---GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL---FDGKDL   74 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcC---CcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE---ECCccc
Confidence            3789999988842    5799999999999   99999999999999999999999997 3 466676664   466654


Q ss_pred             h
Q 023118          139 A  139 (287)
Q Consensus       139 ~  139 (287)
                      .
T Consensus        75 ~   75 (316)
T COG0444          75 L   75 (316)
T ss_pred             c
Confidence            3

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.94  E-value=6.9e-10  Score=108.06  Aligned_cols=66  Identities=24%  Similarity=0.266  Sum_probs=60.9

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ..+++.+++|.|++..+++++||++.+   |++-+|.|.||+|||||+++|.|.+.|   |+|.++   ++|+.+
T Consensus         3 ~~l~~~~itK~f~~~~And~V~l~v~~---GeIHaLLGENGAGKSTLm~iL~G~~~P---~~GeI~---v~G~~v   68 (501)
T COG3845           3 PALEMRGITKRFPGVVANDDVSLSVKK---GEIHALLGENGAGKSTLMKILFGLYQP---DSGEIR---VDGKEV   68 (501)
T ss_pred             ceEEEeccEEEcCCEEecCceeeeecC---CcEEEEeccCCCCHHHHHHHHhCcccC---CcceEE---ECCEEe
Confidence            358999999999999999999999999   999999999999999999999999999   788886   567654

>PTZ00243 ABC transporter; Provisional

Probab=98.93  E-value=7.3e-10  Score=122.88  Aligned_cols=68  Identities=15%  Similarity=0.151  Sum_probs=59.3

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .|+++||+++|.+  ..+|+|+||+|++   |+.|+|+|++|||||||+++|.+.+.+   ++|.+.   .+|.++.++
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~---GekVaIVGrTGSGKSTLl~lLlrl~~p---~~G~I~---IDG~di~~i 1377 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAP---REKVGIVGRTGSGKSTLLLTFMRMVEV---CGGEIR---VNGREIGAY 1377 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEEcccC
Confidence            5999999999964  4599999999999   999999999999999999999999998   567664   467776554

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.93  E-value=9.3e-10  Score=121.33  Aligned_cols=59  Identities=17%  Similarity=0.224  Sum_probs=53.5

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .++++||+++|+.   .++|+++||++++   |++++|+||||||||||+++|++.+.|   +.|.+.
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~---Ge~vaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~  443 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTE---GKTYAFVGESGCGKSTILKLIERLYDP---TEGDII  443 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcC---CCEEEEECCCCCCHHHHHHHHHHhccC---CCCeEE
Confidence            5899999999974   3699999999999   999999999999999999999999999   566654

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.92  E-value=3.3e-08  Score=86.72  Aligned_cols=39  Identities=31%  Similarity=0.477  Sum_probs=35.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      ..|+|+|++||||||+++.|+..+|.+++|+|.+..+.+
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~   40 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREAL   40 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHH
Confidence            369999999999999999999998999999999976654

>PLN02165 adenylate isopentenyltransferase

Probab=98.91  E-value=3.2e-09  Score=100.16  Aligned_cols=113  Identities=19%  Similarity=0.393  Sum_probs=79.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH--------------HHHHhCCCc---hhhhhhhhch---hhhhhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY--------------VEKLMGGTS---VAQIFKESGE---AYFREY  153 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~--------------ie~~~~G~~---i~~~~~~~g~---~~fr~~  153 (287)
                      |..|+|+||+|||||||+..||+.++..++++|.+              .++.. |.+   +..+....+.   ..|++.
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~-gv~Hhli~~~~~~~~~~sv~~F~~~  121 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRR-GVPHHLLGELNPDDGELTASEFRSL  121 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHc-CCChhhhheeccccceeeHHHHHHH
Confidence            88999999999999999999999999999999988              33332 444   3223222222   677777


Q ss_pred             HHHHHHHhhcCCCeEEecCCce-----Eec----cccHHh----------hc-CCcEEEEecCHHHHHHHHhhc
Q 023118          154 ESKALQKLSLVPQQVVATGGGA-----VVR----PLNWRF----------MR-QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       154 e~~~l~~l~~~~~~via~ggG~-----v~~----~~~~~~----------L~-~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      ....++++......+|.+||+-     ++.    |.....          ++ ...++||+.+.+.+.+||..|
T Consensus       122 a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~R  195 (334)
T PLN02165        122 ASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKR  195 (334)
T ss_pred             HHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHH
Confidence            7778888776666778888742     111    111000          11 235789999999999999875

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.91  E-value=1.3e-09  Score=99.82  Aligned_cols=40  Identities=30%  Similarity=0.448  Sum_probs=38.1

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|
T Consensus        37 ~~il~~is~~i~~---Ge~~~liG~NGsGKSTLlk~L~Gl~~p   76 (264)
T PRK13546         37 FFALDDISLKAYE---GDVIGLVGINGSGKSTLSNIIGGSLSP   76 (264)
T ss_pred             eEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            4589999999999   999999999999999999999999887

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.91  E-value=9.5e-10  Score=121.86  Aligned_cols=68  Identities=21%  Similarity=0.339  Sum_probs=59.7

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||+++|+.  ..+|+|+||++++   |+.|+|+|++|||||||+++|.+.+.+   +.|.+.   .+|.++.++
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~---GekiaIVGrTGsGKSTL~~lL~rl~~~---~~G~I~---IdG~dI~~i 1353 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHG---GEKVGIVGRTGAGKSSLTLGLFRINES---AEGEII---IDGLNIAKI 1353 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCccC---CCCeEE---ECCEEcccc
Confidence            5999999999964  4699999999999   999999999999999999999999998   566664   477777655

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN02422 dephospho-CoA kinase

Probab=98.91  E-value=4.8e-08  Score=88.16  Aligned_cols=37  Identities=27%  Similarity=0.444  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      .|+|+|..||||||+++.|+ .+|..++|+|.+..+.+
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~   39 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVL   39 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHH
Confidence            69999999999999999999 57999999999966654

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.91  E-value=2e-08  Score=87.75  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      |+.|+|+||+|||||||++.|++.++
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            99999999999999999999999875

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.90  E-value=1.7e-08  Score=93.27  Aligned_cols=115  Identities=18%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc-CCccccchhHHHHHhCCCchhhh-hhhhchhhhhhhHHHHHHHhhcC-CCeEEec
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYVEKLMGGTSVAQI-FKESGEAYFREYESKALQKLSLV-PQQVVAT  171 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l-~~~fid~d~~ie~~~~G~~i~~~-~~~~g~~~fr~~e~~~l~~l~~~-~~~via~  171 (287)
                      ..|.++|++||||||+++.|+..+ ++.+++.|.+.+..........+ +...++...+......+...... ...|+.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~   82 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISD   82 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence            578899999999999999999999 89999999987655422111111 11112222332333333333222 3334433


Q ss_pred             CCceEeccccHHhh-cC-C---cEEEEecCHHHHHHHHhhcCC
Q 023118          172 GGGAVVRPLNWRFM-RQ-G---ITVFLNVPLDALARRIAAVGT  209 (287)
Q Consensus       172 ggG~v~~~~~~~~L-~~-g---~~I~L~~~~e~l~~Ri~~~~~  209 (287)
                      ..........+..+ +. +   .+|||++|.+.+.+|+..|+.
T Consensus        83 ~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~  125 (300)
T PHA02530         83 TNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE  125 (300)
T ss_pred             CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc
Confidence            33322222223222 22 3   269999999999999998753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.90  E-value=3.8e-10  Score=92.09  Aligned_cols=51  Identities=31%  Similarity=0.478  Sum_probs=43.2

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      |+++|+++.+   |++++|+|+||||||||+++|+|...+   +.|.+.   ++|.++..
T Consensus         1 L~~v~~~i~~---g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~---~~~~~~~~   51 (137)
T PF00005_consen    1 LKNVSLEIKP---GEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSIL---INGKDISD   51 (137)
T ss_dssp             EEEEEEEEET---TSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEE---ETTEEGTT
T ss_pred             CCceEEEEcC---CCEEEEEccCCCccccceeeecccccc---cccccc---cccccccc
Confidence            6899999999   999999999999999999999999888   566654   35655543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.90  E-value=1e-09  Score=97.33  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=39.9

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+|+|+||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         1 ~vl~~vs~~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~~---~sG~i   44 (213)
T PRK15177          1 VVLDKTDFVMGY---HEHIGILAAPGSGKTTLTRLLCGLDAP---DEGDF   44 (213)
T ss_pred             CeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCccC---CCCCE
Confidence            378999999999   999999999999999999999999877   56654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.90  E-value=1.7e-09  Score=111.01  Aligned_cols=58  Identities=22%  Similarity=0.298  Sum_probs=52.1

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++++|+++.|+ +..+++++||++++   |++++|+||||||||||+++|+|.+.+   ++|.+
T Consensus       451 ~i~~~nv~~~~~~~~~il~~isl~i~~---Ge~~~IvG~nGsGKSTLl~lL~Gl~~~---~~G~i  509 (659)
T TIGR00954       451 GIKFENIPLVTPNGDVLIESLSFEVPS---GNHLLICGPNGCGKSSLFRILGELWPV---YGGRL  509 (659)
T ss_pred             eEEEEeeEEECCCCCeeeecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeE
Confidence            599999999994 56799999999999   999999999999999999999999876   45544

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.89  E-value=9.6e-08  Score=83.98  Aligned_cols=159  Identities=17%  Similarity=0.148  Sum_probs=87.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCch-hhhhhhhchhhhhhh----------------HH-HH
Q 023118           97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSV-AQIFKESGEAYFREY----------------ES-KA  157 (287)
Q Consensus        97 i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i-~~~~~~~g~~~fr~~----------------e~-~~  157 (287)
                      |+|+|++||||||++++|++ +|..++|+|.+....+. |..+ ..+....|...+...                +. ..
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~   80 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA   80 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence            79999999999999999987 58999999998655542 3322 222222333332110                00 01


Q ss_pred             HHHh-------------h--cCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcch
Q 023118          158 LQKL-------------S--LVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADS  222 (287)
Q Consensus       158 l~~l-------------~--~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~  222 (287)
                      +.++             .  .....++......  .+..+..+. ..+||+++|++.+.+|+..|++.+           
T Consensus        81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL--~E~~~~~~~-D~vi~V~a~~e~r~~RL~~R~g~s-----------  146 (196)
T PRK14732         81 LNELIHPLVRKDFQKILQTTAEGKLVIWEVPLL--FETDAYTLC-DATVTVDSDPEESILRTISRDGMK-----------  146 (196)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeee--eEcCchhhC-CEEEEEECCHHHHHHHHHHcCCCC-----------
Confidence            1111             0  0111222222211  122222111 578999999999999998763211           


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          223 YTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       223 ~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      .+++..++...+ ...+.-+.||++|            ++++ ++++...++.+.++++++.
T Consensus       147 ~e~a~~ri~~Q~-~~~~k~~~aD~vI------------~N~~-~~~~l~~~v~~l~~~~~~~  194 (196)
T PRK14732        147 KEDVLARIASQL-PITEKLKRADYIV------------RNDG-NREGLKEECKILYSTLLKK  194 (196)
T ss_pred             HHHHHHHHHHcC-CHHHHHHhCCEEE------------ECCC-CHHHHHHHHHHHHHHHHHh
Confidence            112223332211 1112222388776            4544 8999999999888887764

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.89  E-value=1.3e-09  Score=111.58  Aligned_cols=58  Identities=28%  Similarity=0.288  Sum_probs=52.4

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+.    ..+|+++||++.+   |++++|+|+||||||||+++|+|.+.+   ++|.+
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i   65 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYA---GEMVAIVGASGSGKSTLMNILGCLDKP---TSGTY   65 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEE
Confidence            6999999999953    4799999999999   999999999999999999999999987   55544

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.89  E-value=7.9e-10  Score=109.34  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .+++++|+++.+  ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus       249 ~~i~~~~l~~~~--~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~  306 (491)
T PRK10982        249 VILEVRNLTSLR--QPSIRDVSFDLHK---GEILGIAGLVGAKRTDIVETLFGIREK---SAGTIT  306 (491)
T ss_pred             cEEEEeCccccc--CcccceeeEEEeC---CcEEEEecCCCCCHHHHHHHHcCCCcC---CccEEE
Confidence            479999999874  4599999999999   999999999999999999999999988   566554

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.88  E-value=7.9e-10  Score=96.04  Aligned_cols=76  Identities=22%  Similarity=0.331  Sum_probs=60.3

Q ss_pred             ccEEEcceEEEcCC---------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC
Q 023118           64 HDVESGTFCDSLDG---------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG  134 (287)
Q Consensus        64 ~~l~~~~l~~~~~~---------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~  134 (287)
                      +.++++|++|.|-.         ..+++.+||+++.   |+.++|+|.||||||||+|+|+|...|+   +|.+.   ++
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~---~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il---~n   73 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLRE---GQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEIL---IN   73 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecC---CcEEEEEccCCCcHhHHHHHHhcccCCC---CceEE---EC
Confidence            46899999988842         3589999999999   9999999999999999999999999994   66665   46


Q ss_pred             CCchhhhhhhhchhhhhhh
Q 023118          135 GTSVAQIFKESGEAYFREY  153 (287)
Q Consensus       135 G~~i~~~~~~~g~~~fr~~  153 (287)
                      |..+     ++|.-.||..
T Consensus        74 ~~~L-----~~~Dy~~R~k   87 (267)
T COG4167          74 DHPL-----HFGDYSFRSK   87 (267)
T ss_pred             Cccc-----cccchHhhhh
Confidence            6554     2344455543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.88  E-value=1.4e-09  Score=94.39  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=48.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++.+.+|.+.|+..+.  .+++.|+.   |++++|+||||+|||||+++|||...|   .+|.+.
T Consensus         1 ~l~L~~V~~~y~~~~~--~fdl~v~~---ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~   57 (231)
T COG3840           1 MLALDDVRFSYGHLPM--RFDLTVPA---GEIVAILGPSGAGKSTLLNLIAGFETP---ASGEIL   57 (231)
T ss_pred             CccccceEEeeCcceE--EEEEeecC---CcEEEEECCCCccHHHHHHHHHhccCC---CCceEE
Confidence            3568899999986554  56788999   999999999999999999999999999   566553

>PRK13409 putative ATPase RIL; Provisional

Probab=98.87  E-value=2.5e-09  Score=108.40  Aligned_cols=58  Identities=29%  Similarity=0.386  Sum_probs=52.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.|++. .|+++|+++.+   |++++|+||||||||||+++|+|.+.|   +.|.+
T Consensus       339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~---Geiv~l~G~NGsGKSTLlk~L~Gl~~p---~~G~I  396 (590)
T PRK13409        339 TLVEYPDLTKKLGDF-SLEVEGGEIYE---GEVIGIVGPNGIGKTTFAKLLAGVLKP---DEGEV  396 (590)
T ss_pred             eEEEEcceEEEECCE-EEEecceEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence            479999999999875 48999999999   999999999999999999999999987   55544

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.86  E-value=2.2e-08  Score=86.59  Aligned_cols=154  Identities=23%  Similarity=0.330  Sum_probs=83.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcc--ccchhHHHHHhCCCchhhh-hh-----hhchhhhhhhHHH---HHHHhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTF--ADSDKYVEKLMGGTSVAQI-FK-----ESGEAYFREYESK---ALQKLS  162 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~f--id~d~~ie~~~~G~~i~~~-~~-----~~g~~~fr~~e~~---~l~~l~  162 (287)
                      |++|+|-|+|-|||||+++.|...+.-+|  +..|.++..+..+...... +.     ..+...++.....   .++.++
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a   80 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA   80 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999998776  5667776533211111000 00     0112344444433   334444


Q ss_pred             cCCCeEEecCCceEecc----ccH-HhhcC--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118          163 LVPQQVVATGGGAVVRP----LNW-RFMRQ--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK  235 (287)
Q Consensus       163 ~~~~~via~ggG~v~~~----~~~-~~L~~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~  235 (287)
                      .....||..+  ++..+    +.| ++|..  -.+|-+.+|++++.+|=..|++  |+.-.           .+     .
T Consensus        81 ~aG~~VIvD~--v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgD--R~~G~-----------a~-----~  140 (174)
T PF07931_consen   81 RAGNNVIVDD--VFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGD--RPIGL-----------AA-----W  140 (174)
T ss_dssp             HTT-EEEEEE----TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTS--SSTTH-----------HH-----H
T ss_pred             hCCCCEEEec--CccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCC--cchHH-----------HH-----H
Confidence            4555566542  12222    123 33432  2568889999999999988874  54321           00     0


Q ss_pred             HHHhhhh--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          236 ERSEAYA--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       236 ~R~~~Y~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      +-+..|+  .+|+.|            ||+.+||+|.|+.|++.++
T Consensus       141 q~~~Vh~~~~YDleV------------DTs~~sp~ecA~~I~~~~~  174 (174)
T PF07931_consen  141 QAEHVHEGGRYDLEV------------DTSATSPEECAREILARLE  174 (174)
T ss_dssp             HTTGGGTT---SEEE------------ETTSS-HHHHHHHHHTT--
T ss_pred             HHhhcccCCCCCEEE------------ECCCCCHHHHHHHHHHHhC
Confidence            1112333  367765            9999999999999998763

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.86  E-value=1.9e-09  Score=114.58  Aligned_cols=68  Identities=28%  Similarity=0.356  Sum_probs=57.5

Q ss_pred             cEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      -++++||+|.|.   +.++|+|+|+++++   |+.++|||||||||||+..+|-+.++|   +.|.+.   .+|.++.++
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~---GqTvALVG~SGsGKSTvI~LLeRfYdp---~~G~V~---IDg~dik~l 1057 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRA---GQTVALVGPSGSGKSTVISLLERFYDP---DAGKVK---IDGVDIKDL 1057 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecC---CCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEE---ECCcccccC
Confidence            499999999997   45699999999999   999999999999999999999999988   566553   245555443

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.85  E-value=1.2e-09  Score=105.13  Aligned_cols=54  Identities=15%  Similarity=0.177  Sum_probs=47.6

Q ss_pred             cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++.+.||...+|+|+||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+
T Consensus        28 ~~~~~~~g~~~~l~~vsf~i~~---Gei~~I~G~nGsGKSTLlr~L~Gl~~p---~~G~I   81 (382)
T TIGR03415        28 EEILDETGLVVGVANASLDIEE---GEICVLMGLSGSGKSSLLRAVNGLNPV---SRGSV   81 (382)
T ss_pred             HHHHHhhCCEEEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEE
Confidence            3466788888999999999999   999999999999999999999999988   45543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PLN03211 ABC transporter G-25; Provisional

Probab=98.85  E-value=1.2e-09  Score=112.06  Aligned_cols=51  Identities=20%  Similarity=0.270  Sum_probs=47.3

Q ss_pred             EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+|++++|+++.+|+|+|+++++   |+.++|+||||||||||+++|+|.+.+
T Consensus        70 ~~~~l~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpnGaGKSTLL~iLaG~~~~  120 (659)
T PLN03211         70 KISDETRQIQERTILNGVTGMASP---GEILAVLGPSGSGKSTLLNALAGRIQG  120 (659)
T ss_pred             ccccccccCCCCeeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            356788899888999999999999   999999999999999999999999876

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.85  E-value=2e-09  Score=120.89  Aligned_cols=59  Identities=22%  Similarity=0.284  Sum_probs=53.8

Q ss_pred             ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|++  +.+|+++||.+++   |++++|+|||||||||++|+|+|.+.|   ++|.+
T Consensus      1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~---GEi~gLLG~NGAGKTTLlkmL~Gll~p---tsG~I 1996 (2272)
T TIGR01257      1936 DILRLNELTKVYSGTSSPAVDRLCVGVRP---GECFGLLGVNGAGKTTTFKMLTGDTTV---TSGDA 1996 (2272)
T ss_pred             ceEEEEEEEEEECCCCceEEEeeEEEEcC---CcEEEEECCCCCcHHHHHHHHhCCCCC---CccEE
Confidence            47999999999985  6799999999999   999999999999999999999999988   55554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.85  E-value=2.9e-08  Score=87.30  Aligned_cols=36  Identities=31%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC---CccccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD---YTFADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~---~~fid~d~~i  129 (287)
                      +..|+|+|++|||||||++.|++.++   ..+++.|.++
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~   44 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY   44 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence            67999999999999999999999883   3456777664

>PLN02842 nucleotide kinase

Probab=98.84  E-value=9.5e-08  Score=94.66  Aligned_cols=173  Identities=15%  Similarity=0.097  Sum_probs=90.5

Q ss_pred             EEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHHHhhcC----CCeEE
Q 023118           99 LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQKLSLV----PQQVV  169 (287)
Q Consensus        99 LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~~l~~~----~~~vi  169 (287)
                      |+|++||||||+++.|+..++..++++|+++.... ++.+    +.+++ ..|...-...-..++.+-...    ...+|
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l-~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFM-NSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            79999999999999999999999999999876543 2322    33332 222111000111111111111    11122


Q ss_pred             ecCCceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCC-----------CCCCc-------CCCCcchhhHH
Q 023118          170 ATGGGAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTD-----------SFPLL-------DYDSADSYTKA  226 (287)
Q Consensus       170 a~ggG~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~-----------~RPll-------~~~~~~~~~~~  226 (287)
                      ..|  .+.+....+.|.     -.++|||++|.+.+.+|+..|...           ..|..       .....|..+..
T Consensus        81 LDG--fPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~I  158 (505)
T PLN02842         81 LDG--YPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKV  158 (505)
T ss_pred             EeC--CCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHH
Confidence            222  111111122232     257999999999999998765311           01110       11112232222


Q ss_pred             HHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          227 FTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       227 ~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      ..+|..-.+.-.|+...+...+         -.||.+. ++++|.++|...+.+.+.+
T Consensus       159 kkRL~~Y~~~t~pIl~~Y~~rl---------~~IDAsq-s~EeVfeeI~~iL~~~L~~  206 (505)
T PLN02842        159 KARLQIYKKNAEAILSTYSDIM---------VKIDGNR-PKEVVFEEISSLLSQIQKD  206 (505)
T ss_pred             HHHHHHHHHHhhhHHHhcCcEE---------EEEECCC-CHHHHHHHHHHHHHHHHhh
Confidence            2333222222223333221111         1267664 8999999999999988764

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.84  E-value=4.7e-09  Score=100.21  Aligned_cols=82  Identities=20%  Similarity=0.300  Sum_probs=66.7

Q ss_pred             cEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhh
Q 023118           65 DVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFK  143 (287)
Q Consensus        65 ~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~  143 (287)
                      -+|++|+.+.|.+. --+.++|+++++   |+.++|+|.|||||||++++|.|+..|   ++|.+.   ++|.++..-  
T Consensus       322 ~lelrnvrfay~~~~FhvgPiNl~ikr---GelvFliG~NGsGKST~~~LLtGL~~P---qsG~I~---ldg~pV~~e--  390 (546)
T COG4615         322 TLELRNVRFAYQDNAFHVGPINLTIKR---GELVFLIGGNGSGKSTLAMLLTGLYQP---QSGEIL---LDGKPVSAE--  390 (546)
T ss_pred             ceeeeeeeeccCcccceecceeeEEec---CcEEEEECCCCCcHHHHHHHHhcccCC---CCCcee---ECCccCCCC--
Confidence            48999999999755 568999999999   999999999999999999999999999   688776   688877543  


Q ss_pred             hhchhhhhhhHHHHHH
Q 023118          144 ESGEAYFREYESKALQ  159 (287)
Q Consensus       144 ~~g~~~fr~~e~~~l~  159 (287)
                        ..+.||..-..+..
T Consensus       391 --~ledYR~LfSavFs  404 (546)
T COG4615         391 --QLEDYRKLFSAVFS  404 (546)
T ss_pred             --CHHHHHHHHHHHhh
Confidence              44555555444433

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.83  E-value=1.7e-09  Score=96.82  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=38.7

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      |+++||++.+   |++++|+|+||||||||+++|+|.+.|   ++|.+.
T Consensus         1 l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~   43 (230)
T TIGR01184         1 LKGVNLTIQQ---GEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVI   43 (230)
T ss_pred             CCceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE
Confidence            5789999999   999999999999999999999999987   566553

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.83  E-value=3e-09  Score=105.58  Aligned_cols=69  Identities=23%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc-cccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT-FADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~-fid~d~~ie~~~~G~~i  138 (287)
                      ++|+++||+..|..    ..+++|+||++.+   |+.++|+|.|||||||+++.|.|.+.+. -+.+|.++   ++|.++
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~---GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~---~~g~dl   77 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEP---GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI---LDGRDL   77 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecC---CcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE---ECCcch
Confidence            37999999999852    3699999999999   9999999999999999999999999886 34466664   455543

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.83  E-value=2e-09  Score=96.20  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++||++++   |++++|+||||||||||+++|+|.+.|
T Consensus         1 ~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   38 (230)
T TIGR02770         1 LVQDLNLSLKR---GEVLALVGESGSGKSLTCLAILGLLPP   38 (230)
T ss_pred             CccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57899999999   999999999999999999999999886

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.82  E-value=1.6e-09  Score=93.88  Aligned_cols=60  Identities=17%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ..++++|+.|+||...+|+++|++...   |+.|.|||.|||||||+++.|.-+..|   +.|.+.
T Consensus         5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~---GdVisIIGsSGSGKSTfLRCiN~LE~P---~~G~I~   64 (256)
T COG4598           5 NALEVEDLHKRYGEHEVLKGVSLQANA---GDVISIIGSSGSGKSTFLRCINFLEKP---SAGSIR   64 (256)
T ss_pred             cceehhHHHhhcccchhhcceeeecCC---CCEEEEecCCCCchhHHHHHHHhhcCC---CCceEE
Confidence            358999999999999999999999999   999999999999999999999888888   677664

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.81  E-value=1.9e-09  Score=94.46  Aligned_cols=60  Identities=20%  Similarity=0.204  Sum_probs=55.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .++++++++.+||+-.+++++||++.+   |+.=+||||||+||||++-.|.|...|   +.|.++
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~---Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~   63 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDP---GELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVL   63 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecC---CeEEEEECCCCCCceeeeeeecccCCC---CcceEE
Confidence            469999999999999999999999999   999999999999999999999999999   455544

>PRK13973 thymidylate kinase; Provisional

Probab=98.81  E-value=1.7e-07  Score=83.12  Aligned_cols=173  Identities=18%  Similarity=0.205  Sum_probs=87.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhcc---CCccccc--------hhHHHHHhCCCchhhhhhhhchhhhhhh-----HHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDAL---DYTFADS--------DKYVEKLMGGTSVAQIFKESGEAYFREY-----ESK  156 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l---~~~fid~--------d~~ie~~~~G~~i~~~~~~~g~~~fr~~-----e~~  156 (287)
                      +|..|+|-|+.||||||+++.|+..|   |..++.+        +..+.+...+.....+-.....-.|...     +..
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~   81 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV   81 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999   6665544        5555554422110000000000111111     111


Q ss_pred             HHHHhhcCCCeEEecCC--------ceEe-ccccH-Hhh--------cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCC
Q 023118          157 ALQKLSLVPQQVVATGG--------GAVV-RPLNW-RFM--------RQGITVFLNVPLDALARRIAAVGTDSFPLLDYD  218 (287)
Q Consensus       157 ~l~~l~~~~~~via~gg--------G~v~-~~~~~-~~L--------~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~  218 (287)
                      +...+.. ...|++..-        |... -+..| ..+        .-..+|||++|+++..+|+..|+....      
T Consensus        82 i~~~l~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~------  154 (213)
T PRK13973         82 IRPALAR-GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDT------  154 (213)
T ss_pred             HHHHHHC-CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCc------
Confidence            2222322 223333210        1100 01111 111        126799999999999999987642110      


Q ss_pred             CcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          219 SADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       219 ~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                       .+.+++   .-.+.+.++...|.+ ++.-      .....+||.+ .++++|..+|...+.+++.
T Consensus       155 -~~~~e~---~~~~~~~~~~~~y~~l~~~~------~~~~~~Ida~-~~~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        155 -PDRFEK---EDLAFHEKRREAFLQIAAQE------PERCVVIDAT-ASPEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             -cCchhh---chHHHHHHHHHHHHHHHHhC------CCcEEEEcCC-CCHHHHHHHHHHHHHHHHh
Confidence             011110   001122233344443 2100      0001136876 4999999999999987654

>PRK13409 putative ATPase RIL; Provisional

Probab=98.80  E-value=4.9e-09  Score=106.29  Aligned_cols=52  Identities=25%  Similarity=0.189  Sum_probs=46.9

Q ss_pred             ceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           70 TFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        70 ~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++||. ..+|++++ .+.+   |++++|+||||||||||+++|+|.+.|   +.|.+
T Consensus        78 ~~~~~yg~~~~~L~~l~-~i~~---Gev~gLvG~NGaGKSTLlkiL~G~l~p---~~G~i  130 (590)
T PRK13409         78 EPVHRYGVNGFKLYGLP-IPKE---GKVTGILGPNGIGKTTAVKILSGELIP---NLGDY  130 (590)
T ss_pred             CceEEecCCceeEecCC-cCCC---CCEEEEECCCCCCHHHHHHHHhCCccC---CCccc
Confidence            48999986 46999999 8999   999999999999999999999999998   56665

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.79  E-value=9.1e-08  Score=83.11  Aligned_cols=26  Identities=35%  Similarity=0.560  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +|..|+|.|++||||||+++.|+..+
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999999865

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.78  E-value=3.1e-09  Score=105.42  Aligned_cols=55  Identities=20%  Similarity=0.243  Sum_probs=48.8

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|+++     .+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus       256 ~~l~~~~l~~-----~~l~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~G~~~p---~~G~I~  310 (501)
T PRK10762        256 VRLKVDNLSG-----PGVNDVSFTLRK---GEILGVSGLMGAGRTELMKVLYGALPR---TSGYVT  310 (501)
T ss_pred             cEEEEeCccc-----CCcccceEEEcC---CcEEEEecCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            4689999985     379999999999   999999999999999999999999987   566653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.78  E-value=3.1e-09  Score=105.47  Aligned_cols=55  Identities=16%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .+++++++..    .+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus       257 ~l~~~~~~~~----~~l~~isl~i~~---Ge~~~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~  311 (501)
T PRK11288        257 RLRLDGLKGP----GLREPISFSVRA---GEIVGLFGLVGAGRSELMKLLYGATRR---TAGQVY  311 (501)
T ss_pred             EEEEeccccC----CcccceeEEEeC---CcEEEEEcCCCCCHHHHHHHHcCCCcC---CCceEE
Confidence            5888998732    489999999999   999999999999999999999999977   556554

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.77  E-value=4.9e-09  Score=117.88  Aligned_cols=59  Identities=22%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             ccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ..++++|+++.|+  ++.+++++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~---Gei~aLLG~NGAGKSTLLkiLaGLl~P---tsG~I  987 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRPAVDRLNITFYE---NQITAFLGHNGAGKTTTLSILTGLLPP---TSGTV  987 (2272)
T ss_pred             ceEEEEeEEEEecCCCceEEEeeEEEEcC---CcEEEEECCCCChHHHHHHHHhcCCCC---CceEE
Confidence            3699999999995  57899999999999   999999999999999999999999988   45544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.76  E-value=6.5e-09  Score=115.08  Aligned_cols=66  Identities=23%  Similarity=0.274  Sum_probs=55.8

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .++++||+++|+.  ..+|+|+||+|++   |+.|+|+|++|||||||+++|.+.+.    .+|.+.   .+|.++.+
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~---GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~---IdG~di~~ 1284 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEG---GQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQ---IDGVSWNS 1284 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEE---ECCEEccc
Confidence            5999999999963  6799999999999   99999999999999999999999974    345543   36666554

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.75  E-value=1.8e-07  Score=82.63  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .+..|+|+||+|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3889999999999999999999754

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.75  E-value=9.1e-09  Score=88.55  Aligned_cols=62  Identities=23%  Similarity=0.328  Sum_probs=53.5

Q ss_pred             cEEEcceEEEcC-----C--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118           65 DVESGTFCDSLD-----G--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL  132 (287)
Q Consensus        65 ~l~~~~l~~~~~-----~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~  132 (287)
                      .+.++|++|+|-     +  -+++.++||+++.   |+|++|-||||+||||++|.|.+-+.+   |+|.+..+.
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~a---GECvvL~G~SG~GKStllr~LYaNY~~---d~G~I~v~H   72 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNA---GECVVLHGPSGSGKSTLLRSLYANYLP---DEGQILVRH   72 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecC---ccEEEeeCCCCCcHHHHHHHHHhccCC---CCceEEEEe
Confidence            478899988882     2  3689999999999   999999999999999999999998888   888875333

>PRK13974 thymidylate kinase; Provisional

Probab=98.75  E-value=7.3e-07  Score=79.00  Aligned_cols=27  Identities=41%  Similarity=0.511  Sum_probs=25.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .|.+|+|.|+.||||||+++.|++.+.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999998874

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.75  E-value=6e-09  Score=94.31  Aligned_cols=46  Identities=30%  Similarity=0.333  Sum_probs=41.2

Q ss_pred             EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +++||++.    .+|+++||++.+   |++++|+|+||||||||+++|+|.+.
T Consensus         2 ~~~~l~~~----~~l~~vsl~i~~---Gei~~l~G~nGsGKSTLl~~l~Gl~~   47 (248)
T PRK03695          2 QLNDVAVS----TRLGPLSAEVRA---GEILHLVGPNGAGKSTLLARMAGLLP   47 (248)
T ss_pred             cccccchh----ceecceEEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            46777765    289999999999   99999999999999999999999873

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.74  E-value=9.9e-09  Score=100.45  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=49.7

Q ss_pred             CccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           63 AHDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        63 ~~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      ...+.++++++.-.  ++++++++||++.+   |+.++||||||||||||+|+|.|...|.
T Consensus       332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~---G~~lgIIGPSgSGKSTLaR~lvG~w~p~  389 (580)
T COG4618         332 QGALSVERLTAAPPGQKKPILKGISFALQA---GEALGIIGPSGSGKSTLARLLVGIWPPT  389 (580)
T ss_pred             CceeeEeeeeecCCCCCCcceecceeEecC---CceEEEECCCCccHHHHHHHHHcccccC
Confidence            34799999987553  46799999999999   9999999999999999999999999883

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.74  E-value=4.7e-09  Score=104.49  Aligned_cols=54  Identities=20%  Similarity=0.246  Sum_probs=47.8

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++     .+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       267 ~~l~~~~l~~-----~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~i~Gl~~p---~~G~i  320 (510)
T PRK15439        267 PVLTVEDLTG-----EGFRNISLEVRA---GEILGLAGVVGAGRTELAETLYGLRPA---RGGRI  320 (510)
T ss_pred             ceEEEeCCCC-----CCccceeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CCcEE
Confidence            4799999984     269999999999   999999999999999999999999887   45555

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.73  E-value=4.2e-09  Score=93.51  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=57.3

Q ss_pred             cEEEcceEEEcC-----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLD-----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~-----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      |+++.|+.+.|.     ++++|.++|+++..   |+++.|+|.||+||||+++.|||.+.+   |+|.+.   .+|.+++
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~---g~FvtViGsNGAGKSTlln~iaG~l~~---t~G~I~---Idg~dVt   71 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAE---GDFVTVIGSNGAGKSTLLNAIAGDLKP---TSGQIL---IDGVDVT   71 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecC---CceEEEEcCCCccHHHHHHHhhCcccc---CCceEE---ECceecc
Confidence            356677777664     46799999999999   999999999999999999999999999   788775   4677776


Q ss_pred             hh
Q 023118          140 QI  141 (287)
Q Consensus       140 ~~  141 (287)
                      ..
T Consensus        72 k~   73 (263)
T COG1101          72 KK   73 (263)
T ss_pred             cC
Confidence            54

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.72  E-value=9.3e-09  Score=113.17  Aligned_cols=61  Identities=18%  Similarity=0.204  Sum_probs=51.7

Q ss_pred             cEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++||++.|+    ++.+|+|+|+.+++   |+.++|+||||||||||+++|+|.+.+...++|.+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I  823 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKP---GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR  823 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence            578999999984    46799999999999   99999999999999999999999986322244443

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.72  E-value=3.6e-07  Score=80.50  Aligned_cols=167  Identities=11%  Similarity=0.101  Sum_probs=87.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh--hh-------hhhch----hh---hhhhHH--
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ--IF-------KESGE----AY---FREYES--  155 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~--~~-------~~~g~----~~---fr~~e~--  155 (287)
                      +..|+|.|++|+||||+++.|+..+++.++-+++++.+...+..-.+  +.       +..+.    ..   |...-.  
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v   82 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAI   82 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence            67899999999999999999999999988666666555432211111  00       00111    00   111101  


Q ss_pred             -----HHHHHhhcCCCeEEecCCceEeccccHHhhc--CCcEEEEec-CHHHHHHHHhhcCCCCCCCcCCCCcchhhHHH
Q 023118          156 -----KALQKLSLVPQQVVATGGGAVVRPLNWRFMR--QGITVFLNV-PLDALARRIAAVGTDSFPLLDYDSADSYTKAF  227 (287)
Q Consensus       156 -----~~l~~l~~~~~~via~ggG~v~~~~~~~~L~--~g~~I~L~~-~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~  227 (287)
                           .+++.+......++..|-  -..+..+....  ....+||.+ +++.+.+|+..|+..   .-....+..|.+.+
T Consensus        83 ~~~L~~va~~~l~~G~sVIvEgv--~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~---~~~~~p~~~~~~~~  157 (197)
T PRK12339         83 MPGINRVIRRALLNGEDLVIESL--YFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINY---THKNSPGKRLAEHL  157 (197)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEec--CcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhc---ccCCCcHHHHHHHH
Confidence                 112222222333444431  12222222221  234567765 688888999876521   11112234566666


Q ss_pred             HHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          228 TALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       228 ~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      .++..+.+.=...=++.++.+           ||+.  +.++.++.+++.+
T Consensus       158 ~~ir~i~~~l~~~a~~~~i~~-----------i~~~--~~~~~~~~~~~~~  195 (197)
T PRK12339        158 PEYRTIMDYSIADARGYNIKV-----------IDTD--NYREARNPLLDPI  195 (197)
T ss_pred             HHHHHHHHHHHHHHHHcCCCe-----------ecCc--cHHHHHHHHHHHh
Confidence            666665443333333345554           4444  5677777777654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.72  E-value=1.1e-08  Score=88.45  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=33.7

Q ss_pred             CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118           77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      ...+|+++||++.+   |+.++|+||||||||||++++.
T Consensus         7 ~~~~l~~isl~i~~---G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238           7 NVHNLQNLDVSIPL---NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             eeeeecceEEEEcC---CCEEEEECCCCCCHHHHHHHHh
Confidence            35689999999999   9999999999999999999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.69  E-value=2.4e-07  Score=79.82  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      .|+|+|++||||||+++.|+. +|++++|+|.+..+.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~   37 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVY   37 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhh
Confidence            489999999999999999999 8999999999977664

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.69  E-value=7.5e-07  Score=78.84  Aligned_cols=83  Identities=20%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDIT  266 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t  266 (287)
                      .+.|||+++.+.+.+||..|+   ||...... +++...++.+...|...-..|.. .++.|+..         ..+-..
T Consensus       128 dllIyLd~~~e~~l~RI~~Rg---R~~E~~~~-~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~---------~~D~~~  194 (216)
T COG1428         128 DLLIYLDASLETLLRRIAKRG---RPFEIDNF-DENKDYLKDLHRRYDDWFENYDACPVLGIDGD---------SIDFVN  194 (216)
T ss_pred             CEEEEEeCCHHHHHHHHHHhC---CCcccccc-cchHHHHHHHHHHHHHHHHhcccCCeeeeccc---------eecccC
Confidence            578999999999999999876   77775433 23223355555555555555543 34555322         222234


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 023118          267 PTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       267 ~~eva~~i~~~i~~~l~  283 (287)
                      .++-.+.++..|...++
T Consensus       195 ~~~d~~~v~~~I~~~~~  211 (216)
T COG1428         195 NEQDLEKVLDQILAKLK  211 (216)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            45666666666665554

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.68  E-value=2.4e-08  Score=79.67  Aligned_cols=34  Identities=26%  Similarity=0.530  Sum_probs=31.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +|+|+|++||||||+++.|+..++..+++.|.++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            5899999999999999999999999999999953

...

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.66  E-value=6.4e-07  Score=79.74  Aligned_cols=70  Identities=14%  Similarity=0.242  Sum_probs=45.2

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHH-Hhhhhh-CCeEEeccccccccccccCC-C
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKER-SEAYAN-ADATVSLLNLAACIGLKDVL-D  264 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R-~~~Y~~-ad~~v~~~~~a~~~~~idt~-~  264 (287)
                      .++|||++|++.+.+|+..|+   ++.... -...|   ++.+.+.|+++ .+.|.. +++.+           +|.+ .
T Consensus       144 d~~i~l~~~~~~~~~Ri~~R~---~~~e~~-~~~~y---l~~l~~~y~~~~~~~~~~~~~~i~-----------id~~~~  205 (219)
T cd02030         144 HLVIYLDVPVPEVQKRIKKRG---DPHEMK-VTSAY---LQDIENAYKKTFLPEISEHSEVLQ-----------YDWTEA  205 (219)
T ss_pred             CEEEEEeCCHHHHHHHHHHcC---Cchhhc-ccHHH---HHHHHHHHHHHHHHhhccCCCEEE-----------EeCCCh
Confidence            678999999999999998765   332221 12223   46788888777 455764 56655           5643 1


Q ss_pred             CCHHHHHHHHH
Q 023118          265 ITPTTIAMEVL  275 (287)
Q Consensus       265 ~t~~eva~~i~  275 (287)
                      .+.++|+.+|.
T Consensus       206 ~~~e~i~~~I~  216 (219)
T cd02030         206 GDTEKVVEDIE  216 (219)
T ss_pred             hhHHHHHHHHH
Confidence            35666666554

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.66  E-value=1e-06  Score=76.25  Aligned_cols=28  Identities=32%  Similarity=0.539  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|..|+|.|++||||||+++.|+..++.
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3889999999999999999999988743

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.66  E-value=3.3e-08  Score=107.07  Aligned_cols=75  Identities=16%  Similarity=0.239  Sum_probs=62.5

Q ss_pred             CCCCCC-ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC
Q 023118           58 SKDSNA-HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG  134 (287)
Q Consensus        58 ~~~~~~-~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~  134 (287)
                      .+.||. ..++++|++.+|..  ..+|+++||+|+|   |+.|+|||..|||||||+..|-++..+   ..|.+.   .+
T Consensus      1130 p~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p---~eKVGIVGRTGaGKSSL~~aLFRl~e~---~~G~I~---ID 1200 (1381)
T KOG0054|consen 1130 PPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKP---GEKVGIVGRTGAGKSSLILALFRLVEP---AEGEIL---ID 1200 (1381)
T ss_pred             CCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcC---CceEEEeCCCCCCHHHHHHHHHHhcCc---cCCeEE---Ec
Confidence            556775 37999999999964  4799999999999   999999999999999999999999988   455553   36


Q ss_pred             CCchhhh
Q 023118          135 GTSVAQI  141 (287)
Q Consensus       135 G~~i~~~  141 (287)
                      |.+|.++
T Consensus      1201 gvdI~~i 1207 (1381)
T KOG0054|consen 1201 GVDISKI 1207 (1381)
T ss_pred             Ceecccc
Confidence            6666654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.65  E-value=4.9e-07  Score=78.45  Aligned_cols=38  Identities=21%  Similarity=0.433  Sum_probs=34.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      +|.|+|||||||||+++.|+..++.+.+|+|.++....
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~   39 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI   39 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence            68999999999999999999999999999999975544

>TIGR00235 udk uridine kinase

Probab=98.64  E-value=1.8e-07  Score=82.29  Aligned_cols=35  Identities=34%  Similarity=0.456  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC---ccccchhH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY---TFADSDKY  128 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~---~fid~d~~  128 (287)
                      |..|+|+|++|||||||++.|++.++.   .++..|.+
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            899999999999999999999998863   34555554

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.63  E-value=2.1e-08  Score=91.02  Aligned_cols=47  Identities=26%  Similarity=0.244  Sum_probs=36.4

Q ss_pred             eeccccceeeccC--CCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           79 WLLKAKGREVASC--LDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        79 ~il~~~s~~i~~~--l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ..++++++++.+.  -.|++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p---~~G~i   56 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP---DEGDI   56 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCCeE
Confidence            3556666666520  02999999999999999999999999987   56654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.63  E-value=4.7e-07  Score=80.06  Aligned_cols=38  Identities=34%  Similarity=0.549  Sum_probs=34.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL  132 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~  132 (287)
                      ...|+|+|..||||||++++++. +|++.+|+|.++.+.
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~   39 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREV   39 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHH
Confidence            35799999999999999999999 999999999997644

>PRK07261 topology modulation protein; Provisional

Probab=98.62  E-value=7.2e-08  Score=82.76  Aligned_cols=97  Identities=19%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      .|+|+|++|||||||++.|+..+++++++.|.+.   + .....    ....+.+..    .+.++..... .|..|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~---~-~~~~~----~~~~~~~~~----~~~~~~~~~~-wIidg~~~   68 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH---F-QPNWQ----ERDDDDMIA----DISNFLLKHD-WIIDGNYS   68 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE---e-ccccc----cCCHHHHHH----HHHHHHhCCC-EEEcCcch
Confidence            6899999999999999999999999999998775   2 11110    111111111    1222333233 44444311


Q ss_pred             EeccccHHhhc-CCcEEEEecCHHHHHHHHhhc
Q 023118          176 VVRPLNWRFMR-QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       176 v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                        .......+. ...+|||+.|.+.+..|+..|
T Consensus        69 --~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR   99 (171)
T PRK07261         69 --WCLYEERMQEADQIIFLNFSRFNCLYRAFKR   99 (171)
T ss_pred             --hhhHHHHHHHCCEEEEEcCCHHHHHHHHHHH
Confidence              101012222 378999999999999998765

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.61  E-value=1.8e-06  Score=78.49  Aligned_cols=38  Identities=32%  Similarity=0.414  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      .|+|.|..||||||++++|...+|.+.||+|.+..+.+
T Consensus         3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~   40 (244)
T PTZ00451          3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQ   40 (244)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence            69999999999999999999888999999999966654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.60  E-value=1.8e-08  Score=92.16  Aligned_cols=44  Identities=25%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++|+||+|++   |++++++|+||+||||++|+|.|.+.|   ++|.+
T Consensus        38 ~AVqdisf~IP~---G~ivgflGaNGAGKSTtLKmLTGll~p---~~G~v   81 (325)
T COG4586          38 EAVQDISFEIPK---GEIVGFLGANGAGKSTTLKMLTGLLLP---TSGKV   81 (325)
T ss_pred             hhhheeeeecCC---CcEEEEEcCCCCcchhhHHHHhCcccc---CCCeE
Confidence            489999999999   999999999999999999999999999   56654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.60  E-value=3.6e-08  Score=78.64  Aligned_cols=35  Identities=23%  Similarity=0.155  Sum_probs=33.1

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      ..+|++++|++.+   |+.++|+||||||||||++++.
T Consensus         2 ~~aL~~vsl~i~~---ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           2 TTSLHGVLVDVYG---KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             ceEEEeeEEEEcC---CEEEEEEcCCCCCHHHHHHHhh
Confidence            4689999999999   9999999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.60  E-value=3e-08  Score=97.71  Aligned_cols=59  Identities=17%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             CCCCccEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           60 DSNAHDVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        60 ~~~~~~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      ..|.+++-++|++|.|.+. .++++++|.+..   +..+++|||||||||||+|++.+.+.|.
T Consensus       384 ~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~---~srvAlVGPNG~GKsTLlKl~~gdl~p~  443 (614)
T KOG0927|consen  384 KIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDL---DSRVALVGPNGAGKSTLLKLITGDLQPT  443 (614)
T ss_pred             CCCCCeEEEeccccCCCCcchhhhhhhcccCc---ccceeEecCCCCchhhhHHHHhhccccc
Confidence            3667789999999999755 799999999999   9999999999999999999999999994

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.60  E-value=1.2e-07  Score=81.81  Aligned_cols=156  Identities=19%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchhhhhhh-hchhhhhhhHHHHHHHhhcCCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVAQIFKE-SGEAYFREYESKALQKLSLVPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~~~~~~-~g~~~fr~~e~~~l~~l~~~~~~  167 (287)
                      |..|=+.|.|||||||++..|...|     ....+|+|.+-.-...+..    |.. +-.+..|+ -.++.+ +....+.
T Consensus        23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg----Fs~edR~eniRR-vaevAk-ll~daG~   96 (197)
T COG0529          23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG----FSREDRIENIRR-VAEVAK-LLADAGL   96 (197)
T ss_pred             CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC----CChHHHHHHHHH-HHHHHH-HHHHCCe
Confidence            6688899999999999999999877     2334788877522211111    111 11222221 122333 3333444


Q ss_pred             EEecCCceEecc---ccHHhhcCC--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118          168 VVATGGGAVVRP---LNWRFMRQG--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA  242 (287)
Q Consensus       168 via~ggG~v~~~---~~~~~L~~g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~  242 (287)
                      ++.+.--.+.+.   .+++.+.+|  +-||+++|++.+.+|=      ..        .-|.+++.---.-+--=+.-|+
T Consensus        97 iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD------pK--------GLYkKAr~GeI~~fTGid~pYE  162 (197)
T COG0529          97 IVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD------PK--------GLYKKARAGEIKNFTGIDSPYE  162 (197)
T ss_pred             EEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC------ch--------HHHHHHHcCCCCCCcCCCCCCC
Confidence            444432122211   123334443  4599999999999991      11        1222221100000000113455


Q ss_pred             h---CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          243 N---ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       243 ~---ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      .   .+++            +||+..++++.+++|++.+...
T Consensus       163 ~P~~Pel~------------l~t~~~~vee~v~~i~~~l~~~  192 (197)
T COG0529         163 APENPELH------------LDTDRNSVEECVEQILDLLKER  192 (197)
T ss_pred             CCCCCeeE------------eccccCCHHHHHHHHHHHHHhc
Confidence            4   3444            5899999999999999998653

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.60  E-value=7.1e-08  Score=89.98  Aligned_cols=91  Identities=18%  Similarity=0.343  Sum_probs=64.5

Q ss_pred             cEEEcceEEEcCC------------------------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDG------------------------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~------------------------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .++++|+++-||.                        ..-++|+||+++.   |++.+|+|.||||||||.++|.++..|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~---GeIfViMGLSGSGKSTLvR~~NrLiep   80 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEE---GEIFVIMGLSGSGKSTLVRLLNRLIEP   80 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecC---CeEEEEEecCCCCHHHHHHHHhccCCC
Confidence            4788888888863                        1347899999999   999999999999999999999999999


Q ss_pred             ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHH-HHHHHhhcCC
Q 023118          121 TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYES-KALQKLSLVP  165 (287)
Q Consensus       121 ~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~-~~l~~l~~~~  165 (287)
                         +.|.+.   ++|.++..+ .......||.... -+.++++..+
T Consensus        81 ---t~G~il---v~g~di~~~-~~~~Lr~~Rr~~~sMVFQ~FaLlP  119 (386)
T COG4175          81 ---TRGEIL---VDGKDIAKL-SAAELRELRRKKISMVFQSFALLP  119 (386)
T ss_pred             ---CCceEE---ECCcchhcC-CHHHHHHHHhhhhhhhhhhhcccc
Confidence               577665   467776655 2222233333322 2445555443

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.59  E-value=1.7e-06  Score=79.99  Aligned_cols=69  Identities=23%  Similarity=0.301  Sum_probs=48.5

Q ss_pred             cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH---hhhhhCCeEEeccccccccccccCCCC
Q 023118          189 ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS---EAYANADATVSLLNLAACIGLKDVLDI  265 (287)
Q Consensus       189 ~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~---~~Y~~ad~~v~~~~~a~~~~~idt~~~  265 (287)
                      .+|||+++.+++.+|-.... +.-|+.....  .       +..+-.+|+   |+-+.||.+|            ||+++
T Consensus        84 ~ilFLdA~d~~LirRy~eTR-R~HPL~~~~~--~-------le~I~~Er~~L~~lr~~Ad~vI------------DTs~l  141 (284)
T PF03668_consen   84 RILFLDASDEVLIRRYSETR-RRHPLSSDGS--L-------LEAIEKERELLEPLRERADLVI------------DTSNL  141 (284)
T ss_pred             EEEEEECChHHHHHHHHhcc-CCCCCCCCCC--c-------HHHHHHHHHHHHHHHHhCCEEE------------ECCCC
Confidence            47999999999999987532 2346654321  1       223334454   6666688875            99999


Q ss_pred             CHHHHHHHHHHHHH
Q 023118          266 TPTTIAMEVLVQAQ  279 (287)
Q Consensus       266 t~~eva~~i~~~i~  279 (287)
                      ++.+.-+.|.+.+.
T Consensus       142 ~~~~Lr~~i~~~~~  155 (284)
T PF03668_consen  142 SVHQLRERIRERFG  155 (284)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999988765

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.58  E-value=3.2e-07  Score=82.10  Aligned_cols=42  Identities=26%  Similarity=0.518  Sum_probs=33.2

Q ss_pred             CeEEecCCceEeccccHHhhcC--CcEEEEecCHHHHHHHHhhc
Q 023118          166 QQVVATGGGAVVRPLNWRFMRQ--GITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       166 ~~via~ggG~v~~~~~~~~L~~--g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      ..++..|.+.......|..+..  ..+|||++|.+.+.+|+..|
T Consensus       138 ~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R  181 (229)
T PRK09270        138 RLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVAR  181 (229)
T ss_pred             CEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHH
Confidence            4567778877776667766654  68999999999999999875

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.58  E-value=5.7e-07  Score=75.67  Aligned_cols=139  Identities=20%  Similarity=0.294  Sum_probs=82.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhc---CCCeEEe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSL---VPQQVVA  170 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~---~~~~via  170 (287)
                      +..|.|.|.+|+||||++..||..+++.||+.++++.+.-    +-+-+.+ +.+-.--.|..++..|..   ..+.||.
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~----l~~gyDE-~y~c~i~DEdkv~D~Le~~m~~Gg~IVD   81 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN----LYEGYDE-EYKCHILDEDKVLDELEPLMIEGGNIVD   81 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc----chhcccc-cccCccccHHHHHHHHHHHHhcCCcEEe
Confidence            4579999999999999999999999999999999984431    1111110 001111134445555532   2233333


Q ss_pred             cCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEec
Q 023118          171 TGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL  250 (287)
Q Consensus       171 ~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~  250 (287)
                      .-|-- +.|+-|    =..+|.|.+|-+.+..|+..|+.+...+..+-  +     -+.+.-++++=.+.|.. ++++.+
T Consensus        82 yHgCd-~Fperw----fdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNi--e-----cEIfgv~~eea~eSy~~-~iV~eL  148 (176)
T KOG3347|consen   82 YHGCD-FFPERW----FDLVVVLRTPNSVLYDRLKSRGYSEKKIKENI--E-----CEIFGVVLEEARESYSP-KIVVEL  148 (176)
T ss_pred             ecccC-ccchhh----eeEEEEEecCchHHHHHHHHcCCCHHHHhhhc--c-----hHHHHHHHHHHHHHcCC-cceeec
Confidence            32211 112222    15789999999999999998875433332221  1     13455556666677754 455543

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.58  E-value=4.6e-08  Score=83.68  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |.++++++.||..++|-|++|+.+.   |+.++|.||||+|||||++.|.-+.-|   ++|.+
T Consensus         3 irv~~in~~yg~~q~lfdi~l~~~~---getlvllgpsgagkssllr~lnlle~p---~sg~l   59 (242)
T COG4161           3 IQLNGINCFYGAHQALFDITLDCPE---GETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTL   59 (242)
T ss_pred             eEEcccccccccchheeeeeecCCC---CCEEEEECCCCCchHHHHHHHHHHhCC---CCCeE
Confidence            7899999999999999999999999   999999999999999999999766666   67766

>PLN03232 ABC transporter C family member; Provisional

Probab=98.57  E-value=6e-08  Score=107.61  Aligned_cols=54  Identities=24%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .++++|+++.|+.   +.+|+|+||++++   |+.++|+||+|||||||+++|.|.+.+.
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~---Ge~vaIvG~sGSGKSTLl~lLlG~~~~~  670 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPV---GSLVAIVGGTGEGKTSLISAMLGELSHA  670 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence            5899999999963   5799999999999   9999999999999999999999999883

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.57  E-value=5e-08  Score=108.36  Aligned_cols=53  Identities=17%  Similarity=0.189  Sum_probs=49.9

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .++++|+++.|++  ..+|+|+||++++   |+.++|+||+|||||||+++|+|.+.+
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~---G~~v~IvG~~GsGKSTLl~~l~g~~~~  690 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPE---GALVAVVGQVGCGKSSLLSALLAEMDK  690 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            5999999999974  5799999999999   999999999999999999999999887

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.57  E-value=1.1e-06  Score=74.92  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=24.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |+.|+|+||+||||||+++.|++.++.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence            678999999999999999999997643

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PLN03130 ABC transporter C family member; Provisional

Probab=98.54  E-value=6.7e-08  Score=107.81  Aligned_cols=54  Identities=22%  Similarity=0.202  Sum_probs=50.2

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .++++|+++.|+.   ..+|+|+||++++   |+.++|+||+|||||||+++|.|.+.+.
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~---Ge~vaIvG~sGSGKSTLl~lLlG~~~~~  670 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPV---GSLVAIVGSTGEGKTSLISAMLGELPPR  670 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecC---CCEEEEECCCCCCHHHHHHHHHHhhccC
Confidence            5899999999963   5699999999999   9999999999999999999999999883

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.54  E-value=3.2e-06  Score=73.34  Aligned_cols=168  Identities=15%  Similarity=0.205  Sum_probs=96.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCC------CchhhhhhhhchhhhhhhHHHHHHH-hhc-CC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGG------TSVAQIFKESGEAYFREYESKALQK-LSL-VP  165 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G------~~i~~~~~~~g~~~fr~~e~~~l~~-l~~-~~  165 (287)
                      -.+|+++|.+||||-|...-|++.+++..+++|+++....+.      .-|.++.+ .|.-.=-+.-..++++ +.. ..
T Consensus         8 ~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~~~   86 (195)
T KOG3079|consen    8 PPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSSGD   86 (195)
T ss_pred             CCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhcCC
Confidence            458999999999999999999999999999999998776521      11222211 1111100111112221 111 11


Q ss_pred             -CeEEecCCceEeccccHHhh----c--CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH
Q 023118          166 -QQVVATGGGAVVRPLNWRFM----R--QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS  238 (287)
Q Consensus       166 -~~via~ggG~v~~~~~~~~L----~--~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~  238 (287)
                       ...+..|  .+-+.+++..+    .  ..+++|++++.|+..+|+..|+...+  -..++.++.   ..++..-+....
T Consensus        87 ~~~fLIDG--yPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~--R~DDn~esi---kkR~et~~~~t~  159 (195)
T KOG3079|consen   87 SNGFLIDG--YPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNS--RSDDNEESI---KKRLETYNKSTL  159 (195)
T ss_pred             CCeEEecC--CCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCC--CCCCchHHH---HHHHHHHHHcch
Confidence             1122222  22223333332    2  15899999999999999998865433  112222222   234444444444


Q ss_pred             h---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          239 E---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       239 ~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      |   .|++-+-..          -||.+ -+|++|..++...++.
T Consensus       160 Pvi~~~e~kg~l~----------~i~a~-~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  160 PVIEYYEKKGKLL----------KINAE-RSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHHHHccCcEE----------EecCC-CCHHHHHHHHHHHhhc
Confidence            4   555433222          25665 4999999999888765

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.54  E-value=1.7e-06  Score=73.72  Aligned_cols=158  Identities=22%  Similarity=0.256  Sum_probs=85.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCc--cccchhHHHHH--hC---CCch--hhhhhhhchhhhh----------hhH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYT--FADSDKYVEKL--MG---GTSV--AQIFKESGEAYFR----------EYE  154 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~--fid~d~~ie~~--~~---G~~i--~~~~~~~g~~~fr----------~~e  154 (287)
                      |..|+||||||+||-||+......+.-.  |.=.-.+|-.-  .+   ..++  .+++...++..|-          ..-
T Consensus         5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygip   84 (192)
T COG3709           5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGIP   84 (192)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccCc
Confidence            8999999999999999999887766432  11001111000  00   1111  1121111111111          111


Q ss_pred             HHHHHHhhcCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118          155 SKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS  234 (287)
Q Consensus       155 ~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~  234 (287)
                      .++-.++.. ...|++.|.-.++ |..+....+=.+|.|.++++++++|+..|+..++               +++.+.+
T Consensus        85 ~eId~wl~~-G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGREs~---------------eeI~aRL  147 (192)
T COG3709          85 AEIDLWLAA-GDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGRESR---------------EEILARL  147 (192)
T ss_pred             hhHHHHHhC-CCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhccCCH---------------HHHHHHH
Confidence            122223332 2345555543332 3333333345789999999999999998873221               3344433


Q ss_pred             HHHHhhhhh--CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          235 KERSEAYAN--ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       235 ~~R~~~Y~~--ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                       .|...|..  .|...           ||.++ .++...+..+..+.+.
T Consensus       148 -~R~a~~~~~~~dv~~-----------idNsG-~l~~ag~~ll~~l~~~  183 (192)
T COG3709         148 -ARAARYTAGPGDVTT-----------IDNSG-ELEDAGERLLALLHQD  183 (192)
T ss_pred             -HhhcccccCCCCeEE-----------EcCCC-cHHHHHHHHHHHHHhh
Confidence             35555653  45544           78876 7888888888877643

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.2e-07  Score=91.19  Aligned_cols=68  Identities=21%  Similarity=0.301  Sum_probs=58.0

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .+.+.++++.|+ .+++|+++||.+++   |+.++++|++|+||||++++|-..+.+   ++|.+.   .+|.++.+.
T Consensus       262 ~v~F~~V~F~y~~~r~iL~~isf~i~~---g~tvAiVg~SG~gKsTI~rllfRFyD~---~sG~I~---id~qdir~v  330 (497)
T COG5265         262 AVAFINVSFAYDPRRPILNGISFTIPL---GKTVAIVGESGAGKSTILRLLFRFYDV---NSGSIT---IDGQDIRDV  330 (497)
T ss_pred             eEEEEEEEeeccccchhhcCccccccC---ccEEEEEeCCCCcHHHHHHHHHHHhCC---cCceEE---EcchhHHHh
Confidence            478899999996 67899999999999   999999999999999999999998888   566654   356666554

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.53  E-value=4.8e-07  Score=78.20  Aligned_cols=147  Identities=20%  Similarity=0.271  Sum_probs=80.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhh--hh-----------------------hhchh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQI--FK-----------------------ESGEA  148 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~--~~-----------------------~~g~~  148 (287)
                      +|.|.|..|||++|+++.||+.||++|+|. .++.+..  .|.+...+  +.                       ....+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            589999999999999999999999999999 4443332  13222221  00                       01122


Q ss_pred             hhhhhHHHHHHHhhcCCCeEEecCCceEeccccHHhhcC---CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhH
Q 023118          149 YFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ---GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTK  225 (287)
Q Consensus       149 ~fr~~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~---g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~  225 (287)
                      .+.....+++.+++...++| -.|.|.     ++ .|+.   .+.|||.+|.+.+++|+..+.+           ....+
T Consensus        80 ~~~~~~~~~i~~la~~~~~V-i~GR~a-----~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~-----------~s~~~  141 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCV-IVGRCA-----NY-ILRDIPNVLHVFIYAPLEFRVERIMEREG-----------ISEEE  141 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EE-EESTTH-----HH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT-------------HHH
T ss_pred             HHHHHHHHHHHHHhccCCEE-EEecCH-----hh-hhCCCCCeEEEEEECCHHHHHHHHHHHcC-----------CCHHH
Confidence            23334445677777655443 344321     22 2332   4789999999999999986521           12234


Q ss_pred             HHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCC
Q 023118          226 AFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVL  263 (287)
Q Consensus       226 ~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~  263 (287)
                      +...+.+.=..|...|+. .+.  +..+...++.+|||+
T Consensus       142 A~~~i~~~D~~R~~~~~~~~~~--~~~d~~~YDLvint~  178 (179)
T PF13189_consen  142 AEKLIKKEDKRRRAYYKYYTGI--DWGDPSNYDLVINTS  178 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-SS---TTBGGG-SEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--CCCCchhceEEEeCc
Confidence            556666666677777766 444  235566666677775

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.52  E-value=3.2e-06  Score=73.68  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..|+|+||||||||||.+.|...+
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            7899999999999999999998765

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.50  E-value=7.1e-08  Score=94.72  Aligned_cols=52  Identities=21%  Similarity=0.398  Sum_probs=42.1

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ++|+++|+++.+   |+.++|+||||||||||++  ++.+.++  +++.+.   .+|.++..
T Consensus        20 ~vL~~Vsl~i~~---GEiv~L~G~SGsGKSTLLr--~~l~~~~--sGg~I~---ldg~~~~~   71 (504)
T TIGR03238        20 RILVKFNKELPS---SSLLFLCGSSGDGKSEILA--ENKRKFS--EGYEFF---LDATHSFS   71 (504)
T ss_pred             HHHhCCceeecC---CCEEEEECCCCCCHHHHHh--cCCCCCC--CCCEEE---ECCEECCC
Confidence            579999999999   9999999999999999999  6666664  444454   46766654

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.50  E-value=3.4e-07  Score=84.55  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCc---cccchhH
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYT---FADSDKY  128 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~---fid~d~~  128 (287)
                      .|+|+|++||||||+++.|++.+++.   .+..|.+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            47999999999999999999988642   4555544

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PLN03140 ABC transporter G family member; Provisional

Probab=98.50  E-value=1.1e-07  Score=104.96  Aligned_cols=53  Identities=23%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             cEEEcceEEEcC-------------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLD-------------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+.++||++.++             .+.+|+|+|+.+++   |+.++|+||||||||||+++|+|...+
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Gel~aL~G~sGaGKTTLL~~LaG~~~~  932 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP---GVLTALMGVSGAGKTTLMDVLAGRKTG  932 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEEC---CeEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            478899987763             34799999999999   999999999999999999999998753

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.49  E-value=7.8e-07  Score=74.22  Aligned_cols=102  Identities=19%  Similarity=0.338  Sum_probs=58.7

Q ss_pred             EEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-c----hhhhhhhhchhhhhhhHHHHHHH-hhc--CCCeEEe
Q 023118           99 LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-S----VAQIFKESGEAYFREYESKALQK-LSL--VPQQVVA  170 (287)
Q Consensus        99 LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-~----i~~~~~~~g~~~fr~~e~~~l~~-l~~--~~~~via  170 (287)
                      |+||+||||||+++.||..++..+|+.++++++..... .    +.++. ..|...=-+.-.++++. +..  ....++-
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l-~~g~~vp~~~v~~ll~~~l~~~~~~~g~il   79 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYL-DNGELVPDELVIELLKERLEQPPCNRGFIL   79 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHH-HTTSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHH-HhhccchHHHHHHHHHHHHhhhcccceeee
Confidence            78999999999999999999999999999987765221 1    22222 12222111111222222 221  1233333


Q ss_pred             cCCceEeccccHH---hhc-----C----CcEEEEecCHHHHHHHHhh
Q 023118          171 TGGGAVVRPLNWR---FMR-----Q----GITVFLNVPLDALARRIAA  206 (287)
Q Consensus       171 ~ggG~v~~~~~~~---~L~-----~----g~~I~L~~~~e~l~~Ri~~  206 (287)
                      .|-     |.+..   .+.     .    ..+|+|++|.+.+.+|+..
T Consensus        80 dGf-----Prt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   80 DGF-----PRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             ESB------SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             eec-----cccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            331     33332   111     1    4689999999999999874

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.48  E-value=7.2e-08  Score=85.83  Aligned_cols=44  Identities=25%  Similarity=0.277  Sum_probs=35.9

Q ss_pred             eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      |++++   |++++|+|+||||||||+++|+|.+.+   ++|.+.   ++|.++
T Consensus         1 l~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~   44 (223)
T TIGR03771         1 LSADK---GELLGLLGPNGAGKTTLLRAILGLIPP---AKGTVK---VAGASP   44 (223)
T ss_pred             CccCC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCccc
Confidence            46777   999999999999999999999999988   566554   345443

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.47  E-value=1.3e-06  Score=75.69  Aligned_cols=29  Identities=28%  Similarity=0.579  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      .|+|-|+.||||||+++.|+..++..++.
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~   29 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP   29 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence            38999999999999999999877765543

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.47  E-value=3e-07  Score=78.11  Aligned_cols=103  Identities=23%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchhhhhhhhc-hhhhhhhHHHHHHHhhcCCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVAQIFKESG-EAYFREYESKALQKLSLVPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~~~~~~~g-~~~fr~~e~~~l~~l~~~~~~  167 (287)
                      |-.|-|+|.+|||||||++.|...|     ...++|+|.+-.    +.+-.--|...+ ....| .-.++.+-++.....
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~----~l~~dl~fs~~dR~e~~r-r~~~~A~ll~~~G~i   76 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH----GLNADLGFSKEDREENIR-RIAEVAKLLADQGII   76 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT----TTTTT--SSHHHHHHHHH-HHHHHHHHHHHTTSE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh----ccCCCCCCCHHHHHHHHH-HHHHHHHHHHhCCCe
Confidence            7789999999999999999999887     355788888762    221110111111 12222 223334444443333


Q ss_pred             EEecCCceEeccccHHhh----cC--CcEEEEecCHHHHHHH
Q 023118          168 VVATGGGAVVRPLNWRFM----RQ--GITVFLNVPLDALARR  203 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L----~~--g~~I~L~~~~e~l~~R  203 (287)
                      ||.+. -.+ ..+.++..    .+  =+-||+++|++++.+|
T Consensus        77 vIva~-isp-~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R  116 (156)
T PF01583_consen   77 VIVAF-ISP-YREDREWARELIPNERFIEVYVDCPLEVCRKR  116 (156)
T ss_dssp             EEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred             EEEee-ccC-chHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence            44332 111 12333333    33  2569999999999999

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.46  E-value=5.5e-07  Score=71.78  Aligned_cols=22  Identities=41%  Similarity=0.652  Sum_probs=21.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcc
Q 023118           97 LFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        97 i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      |+|.|++||||||+++.|+..+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999987

...

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.45  E-value=2.4e-07  Score=91.43  Aligned_cols=54  Identities=28%  Similarity=0.266  Sum_probs=51.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .+.++|+++.|.+..+++|..|++.+   |++++|+|++||||||+++.|++...|.
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~---g~rygLiG~nG~Gkst~L~~i~~~e~P~  128 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNR---GRRYGLIGPNGSGKSTFLRAIAGREVPI  128 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecC---CceEEEEcCCCCcHhHHHHHHhcCCCCC
Confidence            58999999999999999999999999   9999999999999999999999988763

>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2

Probab=98.43  E-value=5.1e-07  Score=76.66  Aligned_cols=110  Identities=25%  Similarity=0.215  Sum_probs=66.6

Q ss_pred             hhhhhhhHHHHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhh
Q 023118          147 EAYFREYESKALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT  224 (287)
Q Consensus       147 ~~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~  224 (287)
                      .+..|..-....++++. ...+|..|.  |+|..|.+.      +.|||+++++.+++|=..      .+........| 
T Consensus        45 ~~~VR~~l~~~Qr~~a~-~~~vV~eGRDigTvVfPdA~------~KifLtAs~e~RA~RR~~------e~~~~g~~~~~-  110 (157)
T PF02224_consen   45 IPEVREALVEIQREIAK-KGGVVMEGRDIGTVVFPDAD------LKIFLTASPEVRARRRYK------ELQEKGKKVSY-  110 (157)
T ss_dssp             SHHHHHHHHHHHHHHHT-TSCEEEEESSCCCCCCTT-S------EEEEEE--HHHHHHHHHH------HHHHTT----H-
T ss_pred             CHHHHHHHHHHHHHHHH-cCCeEEecCCCceEEcCCCC------EEEEEECCHHHHHHHHHH------HHHhCCCCCCH-
Confidence            45566666777788887 455777786  888888764      899999999999999432      12222112234 


Q ss_pred             HHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHH
Q 023118          225 KAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLV  276 (287)
Q Consensus       225 ~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~  276 (287)
                         +++.+-+.+|+..-.+ .-.-+   -.|.+..+|||+++|++|+++.|++
T Consensus       111 ---e~v~~~i~~RD~~D~~R~~aPL---~~a~DAi~IDts~lti~evv~~il~  157 (157)
T PF02224_consen  111 ---EEVLEDIKERDERDSNREVAPL---KKAEDAIVIDTSNLTIEEVVEKILE  157 (157)
T ss_dssp             ---HHHHHHHHHHHHHHHCTSSS-S---S--TTSEEEETTTS-HHHHHHHHHH
T ss_pred             ---HHHHHHHHhhChhhccCccCCC---ccCCCeEEEECCCCCHHHHHHHHhC
Confidence               5566666778743332 11111   0233344599999999999999975

7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.43  E-value=1.4e-07  Score=84.44  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=30.8

Q ss_pred             CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118           76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~  111 (287)
                      .+..+|+++||++++   |++++|+|+||||||||+
T Consensus         6 ~~~~~l~~vsl~i~~---Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           6 AREHNLKNVDVDIPR---NKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             chhhccccceeecCC---CcEEEEEcCCCCCHHHHH
Confidence            356799999999999   999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.43  E-value=1.1e-07  Score=96.87  Aligned_cols=42  Identities=31%  Similarity=0.313  Sum_probs=39.1

Q ss_pred             CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++.+|+|+|+++++   |+.++|+||+|||||||+++|+|...+
T Consensus        36 ~~~~iL~~vs~~i~~---Ge~~aI~G~sGsGKSTLL~~L~g~~~~   77 (617)
T TIGR00955        36 PRKHLLKNVSGVAKP---GELLAVMGSSGAGKTTLMNALAFRSPK   77 (617)
T ss_pred             CccccccCCEEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            356799999999999   999999999999999999999998866

>PRK06696 uridine kinase; Validated

Probab=98.42  E-value=1.6e-06  Score=77.37  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|.|++||||||+++.|+..+
T Consensus        23 ~iI~I~G~sgsGKSTlA~~L~~~l   46 (223)
T PRK06696         23 LRVAIDGITASGKTTFADELAEEI   46 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999988

>PRK07933 thymidylate kinase; Validated

Probab=98.41  E-value=1.8e-05  Score=70.33  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=43.8

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCC--cCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPL--LDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDI  265 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPl--l~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~  265 (287)
                      .++|||++|++...+|+..++......  -..+....|   ++++.+.|.+.-..+......+           ||. ..
T Consensus       134 Dl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f---~~~v~~~Y~~~~~~~~~~~~~~-----------ida-~~  198 (213)
T PRK07933        134 DLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGL---QQRTGAVYAELAAQGWGGPWLV-----------VDP-DV  198 (213)
T ss_pred             CEEEEecCCHHHHHHHHHhhccccCCcccccccccHHH---HHHHHHHHHHHHHhcCCCCeEE-----------eCC-CC
Confidence            689999999999999998765311000  001111122   3344444444433321112222           677 46


Q ss_pred             CHHHHHHHHHHHH
Q 023118          266 TPTTIAMEVLVQA  278 (287)
Q Consensus       266 t~~eva~~i~~~i  278 (287)
                      ++++|.++|.+.+
T Consensus       199 ~~e~v~~~i~~~~  211 (213)
T PRK07933        199 DPAALAARLAAAL  211 (213)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

>smart00072 GuKc Guanylate kinase homologues

Probab=98.40  E-value=7.2e-06  Score=70.88  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..|+|+||+||||+|+.+.|....
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            6789999999999999999998876

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN03140 ABC transporter G family member; Provisional

Probab=98.38  E-value=1.7e-07  Score=103.69  Aligned_cols=42  Identities=29%  Similarity=0.278  Sum_probs=39.3

Q ss_pred             CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .+.+|+|+|+.+++   |+.++|+||||||||||+++|+|.+.+.
T Consensus       177 ~~~IL~~vs~~i~~---Ge~~~llGpnGSGKSTLLk~LaG~l~~~  218 (1470)
T PLN03140        177 KLTILKDASGIIKP---SRMTLLLGPPSSGKTTLLLALAGKLDPS  218 (1470)
T ss_pred             cceeccCCeEEEeC---CeEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence            36799999999999   9999999999999999999999999773

>PRK12338 hypothetical protein; Provisional

Probab=98.37  E-value=1.5e-05  Score=75.14  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=92.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh----hhh--hch-----------------hhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI----FKE--SGE-----------------AYF  150 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~----~~~--~g~-----------------~~f  150 (287)
                      ...|+|.|++||||||+++.||..++..++..++.+.+.+.|..-.++    ...  ..+                 ..|
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf   83 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGF   83 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHH
Confidence            458899999999999999999999999988444554444445322211    110  000                 011


Q ss_pred             hhhHHHH-------HHHhhcCCCeEEecCCceEeccccHHhhc---C--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCC
Q 023118          151 REYESKA-------LQKLSLVPQQVVATGGGAVVRPLNWRFMR---Q--GITVFLNVPLDALARRIAAVGTDSFPLLDYD  218 (287)
Q Consensus       151 r~~e~~~-------l~~l~~~~~~via~ggG~v~~~~~~~~L~---~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~  218 (287)
                      ...-..+       +.........+|..|-..  .|.-.....   .  -..++|..+.+...+|...|.....     .
T Consensus        84 ~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl--~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~-----r  156 (319)
T PRK12338         84 EEHASFVIPAIEKVIERAVTDSDDIVIEGVHL--VPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIK-----R  156 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEEeccc--cHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccC-----C
Confidence            1111111       111122334566665422  232222111   1  1346667899999999987642111     1


Q ss_pred             CcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          219 SADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       219 ~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                       +..|.+.+..+..+.+.=...=.+.++.             .+++.+.++.++.+++.|..+..
T Consensus       157 -~~~~l~~f~~Ir~Iq~~l~~~A~e~~Vp-------------vI~N~did~Tv~~ile~I~e~s~  207 (319)
T PRK12338        157 -GGKQLEYFRENRIIHDHLVEQAREHNVP-------------VIKNDDIDCTVKKMLSYIREVCV  207 (319)
T ss_pred             -chhhhhChHHHHHHHHHHHHhHhhCCCc-------------eeCCCcHHHHHHHHHHHHHhheE
Confidence             1134444555655544333331224444             35667899999999999987643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.36  E-value=3.6e-07  Score=101.46  Aligned_cols=45  Identities=27%  Similarity=0.341  Sum_probs=40.4

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +.+|+|+||++++   |+.++|+||+|||||||+++|+|.+.+   +.|.+
T Consensus       439 ~~~l~~i~l~i~~---G~~~~I~G~~GsGKSTLl~~l~G~~~~---~~G~i  483 (1490)
T TIGR01271       439 TPVLKNISFKLEK---GQLLAVAGSTGSGKSSLLMMIMGELEP---SEGKI  483 (1490)
T ss_pred             CcceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence            4589999999999   999999999999999999999999987   45543

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=98.36  E-value=1.7e-05  Score=70.54  Aligned_cols=29  Identities=34%  Similarity=0.611  Sum_probs=26.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      +|..|+|=|.-||||||+++.|+..+...
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~   30 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEER   30 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            48999999999999999999999987553

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=3.6e-07  Score=88.53  Aligned_cols=55  Identities=22%  Similarity=0.160  Sum_probs=51.2

Q ss_pred             ccEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           64 HDVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        64 ~~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      +++-+.+|+|.| +..+++++++|-|.-   ..+|+||||+|.|||||+++|.|.+.|.
T Consensus       585 PvLGlH~VtFgy~gqkpLFkkldFGiDm---dSRiaIVGPNGVGKSTlLkLL~Gkl~P~  640 (807)
T KOG0066|consen  585 PVLGLHDVTFGYPGQKPLFKKLDFGIDM---DSRIAIVGPNGVGKSTLLKLLIGKLDPN  640 (807)
T ss_pred             CeeecccccccCCCCCchhhcccccccc---cceeEEECCCCccHHHHHHHHhcCCCCC
Confidence            579999999999 567899999999987   8899999999999999999999999995

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.35  E-value=1.6e-06  Score=72.65  Aligned_cols=103  Identities=23%  Similarity=0.289  Sum_probs=55.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc---CC--ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL---DY--TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVA  170 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l---~~--~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via  170 (287)
                      .+.|+|++||||||+++.|++.+   ++  .++++|.+......+....   .......++... ...+.+......|+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~---~~~~~~~~~~~~-~~a~~l~~~G~~VIi   76 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFS---REDREENIRRIA-EVAKLLADAGLIVIA   76 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCC---cchHHHHHHHHH-HHHHHHHhCCCEEEE
Confidence            37899999999999999999998   43  4567777654332111111   111112222211 122333333333444


Q ss_pred             cCCceEeccccHHhhc---C---CcEEEEecCHHHHHHHH
Q 023118          171 TGGGAVVRPLNWRFMR---Q---GITVFLNVPLDALARRI  204 (287)
Q Consensus       171 ~ggG~v~~~~~~~~L~---~---g~~I~L~~~~e~l~~Ri  204 (287)
                      ....  .....+..++   +   -.+|||++|++.+.+|.
T Consensus        77 d~~~--~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~  114 (149)
T cd02027          77 AFIS--PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRD  114 (149)
T ss_pred             ccCC--CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhC
Confidence            3321  1122222221   1   24699999999999994

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.35  E-value=1.5e-06  Score=83.50  Aligned_cols=68  Identities=22%  Similarity=0.223  Sum_probs=56.5

Q ss_pred             ccEEEcceEEEcC-----------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118           64 HDVESGTFCDSLD-----------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL  132 (287)
Q Consensus        64 ~~l~~~~l~~~~~-----------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~  132 (287)
                      ++++.+++...|.           ...+++++||++.+   |+.++|||.|||||||++..|.+++.+   + |.+.   
T Consensus       275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~---gqTlGlVGESGSGKsTlG~allrL~~s---~-G~I~---  344 (534)
T COG4172         275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR---GQTLGLVGESGSGKSTLGLALLRLIPS---Q-GEIR---  344 (534)
T ss_pred             ceEEecceEEEEecCCccccccchheEEeccceeEecC---CCeEEEEecCCCCcchHHHHHHhhcCc---C-ceEE---
Confidence            4799999887772           24689999999999   999999999999999999999999987   4 5444   


Q ss_pred             hCCCchhhh
Q 023118          133 MGGTSVAQI  141 (287)
Q Consensus       133 ~~G~~i~~~  141 (287)
                      +.|.++..+
T Consensus       345 F~G~~i~~~  353 (534)
T COG4172         345 FDGQDIDGL  353 (534)
T ss_pred             ECCcccccc
Confidence            468777554

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.34  E-value=4.7e-07  Score=80.22  Aligned_cols=53  Identities=25%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +.+++.++.+.|. ..+++-|+|++++.   |.+..|+|.||+|||||+|+|+|..-
T Consensus        12 ~aievsgl~f~y~~~dP~~~Dfnldlp~---gsRcLlVGaNGaGKtTlLKiLsGKhm   65 (291)
T KOG2355|consen   12 FAIEVSGLQFKYKVSDPIFFDFNLDLPA---GSRCLLVGANGAGKTTLLKILSGKHM   65 (291)
T ss_pred             ceEEEeccEEecccCCceEEEEeeccCC---CceEEEEecCCCchhhhHHHhcCccc
Confidence            4699999999996 45799999999999   99999999999999999999998753

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.33  E-value=4.6e-06  Score=72.49  Aligned_cols=37  Identities=38%  Similarity=0.636  Sum_probs=32.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      .|+|+|..||||||++++++. +|++.+|+|.+..+.+
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~   38 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELY   38 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCT
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHh
Confidence            689999999999999999998 9999999999965554

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.29  E-value=1.5e-05  Score=68.69  Aligned_cols=26  Identities=35%  Similarity=0.496  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++.|+|+||+|||||||.+.|...++
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            78999999999999999999987654

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.28  E-value=4.1e-07  Score=100.41  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=37.0

Q ss_pred             CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+++|+|+|+.+++   |+.++|+||||||||||+++|+|.+
T Consensus        73 ~~~iL~~vs~~i~~---Ge~~aIlG~nGsGKSTLLk~LaG~~  111 (1394)
T TIGR00956        73 TFDILKPMDGLIKP---GELTVVLGRPGSGCSTLLKTIASNT  111 (1394)
T ss_pred             cceeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999   9999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	287
3nwj_A	250	Crystal Structure Of Shikimate Kinase From Arabidop		1e-51
2pt5_A	168	Crystal Structure Of Shikimate Kinase (Aq_2177) Fro		1e-12
3vaa_A	199	1.7 Angstrom Resolution Crystal Structure Of Shikim		2e-11
1kag_A	173	Crystal Structure Of The Escherichia Coli Shikimate		4e-10
1shk_A	173	The Three-dimensional Structure Of Shikimate Kinase		1e-09
1e6c_A	173	K15m Mutant Of Shikimate Kinase From Erwinia Chrysa		7e-09
3trf_A	185	Structure Of A Shikimate Kinase (Arok) From Coxiell		3e-08
1zuh_A	168	Structural Basis For Shikimate-Binding Specificity		2e-06
3n2e_A	168	Crystal Structure Of Helicobactor Pylori Shikimate		5e-06
1l4u_A	176	Crystal Structure Of Shikimate Kinase From Mycobact		7e-06
2iyq_A	184	Shikimate Kinase From Mycobacterium Tuberculosis In		7e-06
3mrs_A	168	Crystal Structure Of Shikimate Kinase Mutant (R57a)		2e-05
1via_A	175	Crystal Structure Of Shikimate Kinase Length = 175		3e-05

>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis Thaliana (Atsk2) Length = 250

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/233 (46%), Positives = 151/233 (64%), Gaps = 4/233 (1%)
Query: 57  VSKDSNAHDVESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEIL 114
           VS  +++  +E+G+   S   + + +LK K  EV   L+G+ ++LVGMMGSGKTTVG+I+
Sbjct: 9   VSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIM 68
Query: 115 SDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXXX-X 173
           + +L YTF D D  +E+ M GTSVA+IF+  GE+ FRE E++AL+KLSL           
Sbjct: 69  ARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGG 128
Query: 174 XXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLL-DYDSADSYTKAFTALSA 232
               RP+NW++M +GI+++L+VPL+ALA RIAAVGT S PLL D +S D+YT A   LS 
Sbjct: 129 GAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLST 188
Query: 233 LSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285
           +   R EAY  A A VSL N+   +G + V D+TP  IA+E   Q Q YL  +
Sbjct: 189 IWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 241

>pdb|2PT5|A Chain A, Crystal Structure Of Shikimate Kinase (Aq_2177) From Aquifex Aeolicus Vf5 Length = 168

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           ++L+G   SGK+TVG +LS +L+  F D D+ V+K   G S+ QIF++ GEAYFR+ E +
Sbjct: 3   IYLIGFXCSGKSTVGSLLSRSLNIPFYDVDEEVQK-REGLSIPQIFEKKGEAYFRKLEFE 61
Query: 157 ALQKLSLXXXXXXXXXXXXXXRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLL 215
            L+ LS                     F + +G TVF+++P +    R     +   PLL
Sbjct: 62  VLKDLSEKENVVISTGGGLGANEEALNFXKSRGTTVFIDIPFEVFLERCKD--SKERPLL 119
Query: 216 DYDSADSYTKAFTALSALSKERSEAYANADATV 248
                    +    +  L +ER + Y+ AD  V
Sbjct: 120 --------KRPLDEIKNLFEERRKIYSKADIKV 144

>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate Kinase From Bacteroides Thetaiotaomicron Length = 199

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +FL G MG+GKTT+G+  +  L+  F D D Y+E+    T V ++F E GEA FRE E  
Sbjct: 28  IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKT-VGELFTERGEAGFRELERN 86
Query: 157 ALQKLSLXXXXXXXXXXXXXXRPLNWRFM-RQGITVFLNVPLDALARRI 204
            L +++                  N  FM R G TVFLNV  D L RR+
Sbjct: 87  MLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRL 135

>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase I (Arok) Length = 173

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +FLVG MG+GK+T+G  L+  L+  F DSD+ +EK  G   V  +F   GE  FR+ E K
Sbjct: 7   IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA-DVGWVFDLEGEEGFRDREEK 65
Query: 157 ALQKLSLXX-XXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTD-SFPL 214
            + +L+                R    R   +G+ V+L   ++   +++A    D   PL
Sbjct: 66  VINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIE---KQLARTQRDKKRPL 122
Query: 215 LDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACI 257
           L  +     T     L AL+ ER+  Y   AD T+   + +A +
Sbjct: 123 LHVE-----TPPREVLEALANERNPLYEEIADVTIRTDDQSAKV 161

>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From Erwinia Chrysanthemi Length = 173

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 95  QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
           + +F+VG  G GKTTVG  L+ AL Y F D+D +++    G +VA +    G   FR  E
Sbjct: 3   EPIFMVGARGCGKTTVGRELARALGYEFVDTDIFMQH-TSGMTVADVVAAEGWPGFRRRE 61
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMR-QGITVFLNVPLDALARRIAA 206
           S+ALQ ++                  N +FMR  G  V+L  P + LA R+ A
Sbjct: 62  SEALQAVATPNRVVATGGGMVLLE-QNRQFMRAHGTVVYLFAPAEELALRLQA 113

>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi Length = 173

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 95  QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
           + +F+VG  G G TTVG  L+ AL Y F D+D +++    G +VA +    G   FR  E
Sbjct: 3   EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH-TSGMTVADVVAAEGWPGFRRRE 61
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMR-QGITVFLNVPLDALARRIAA 206
           S+ALQ ++                  N +FMR  G  V+L  P + LA R+ A
Sbjct: 62  SEALQAVATPNRVVATGGGMVLLE-QNRQFMRAHGTVVYLFAPAEELALRLQA 113

>pdb|3TRF|A Chain A, Structure Of A Shikimate Kinase (Arok) From Coxiella Burnetii Length = 185

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           ++L+G+MG+GKT+VG  L+        DSDK +EK  G   +A IF+  GEA FR  E +
Sbjct: 8   IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA-DIAWIFEMEGEAGFRRRERE 66
Query: 157 ALQKL-SLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLL 215
            ++ L  L                   +    G+ ++L   +D   +RI   G    PL 
Sbjct: 67  MIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLF 126

>pdb|1ZUH|A Chain A, Structural Basis For Shikimate-Binding Specificity Of Helicobacter Pylori Shikimate Kinase Length = 168

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 95  QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
           Q L L+G MGSGK+++ + L  AL     D+D  + + + G SV +IF+E GE  FR +E
Sbjct: 8   QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFE 66
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPL 214
              + +L                   N + +  G T +L +  + L +R+     +  PL
Sbjct: 67  KNLIDELKTLKTPHVISTGGGIVMHENLKGL--GTTFYLKMDFETLIKRLNQKEREKRPL 124
Query: 215 LD 216
           L+
Sbjct: 125 LN 126

>pdb|3N2E|A Chain A, Crystal Structure Of Helicobactor Pylori Shikimate Kinase In Complex With Nsc162535 Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 95  QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
           Q L L+G MGSGK+++ + L  AL     D+D  + + + G SV +IF+E GE  FR +E
Sbjct: 2   QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFE 60
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPL 214
              + +L                   N + +  G T +L +  + L +R+        PL
Sbjct: 61  KNLIDELKTLKTPHVISTGGGIVMHENLKGL--GTTFYLKMDFETLIKRLNQKERAKRPL 118
Query: 215 LD 216
           L+
Sbjct: 119 LN 120

>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8 Angstrom Resolution Length = 176

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 98  FLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA 157
            LVG+ GSGK+T+G  L+ AL     D+D  +E+   G S+A IF   GE  FR  E   
Sbjct: 6   VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDV 64
Query: 158 LQ 159
           ++
Sbjct: 65  VR 66

>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In Complex With Shikimate And Adp Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 98  FLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA 157
            LVG+ GSGK+T+G  L+ AL     D+D  +E+   G S+A IF   GE  FR  E   
Sbjct: 6   VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDV 64
Query: 158 LQ 159
           ++
Sbjct: 65  VR 66

>pdb|3MRS|A Chain A, Crystal Structure Of Shikimate Kinase Mutant (R57a) From Helicobacter Pylori Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 95  QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
           Q L L+G MGSGK+++ + L  AL     D+D  + + + G SV +IF+E GE  F  +E
Sbjct: 8   QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFAMFE 66
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPL 214
              + +L                   N + +  G T +L +  + L +R+     +  PL
Sbjct: 67  KNLIDELKTLKTPHVISTGGGIVMHENLKGL--GTTFYLKMDFETLIKRLNQKEREKRPL 124
Query: 215 LD 216
           L+
Sbjct: 125 LN 126

>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +  +G  GSGK+T+   L+  LD  F DSD  +E+      V++IF++  E +FRE E K
Sbjct: 7   IVFIGFXGSGKSTLARALAKDLDLVFLDSDFLIEQKF-NQKVSEIFEQKRENFFREQEQK 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	1e-79
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	6e-52
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	2e-51
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	3e-49
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	4e-49
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	5e-48
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	1e-47
1via_A	175	Shikimate kinase; structural genomics, transferase	6e-45
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	7e-44
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	3e-12
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	8e-12
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	2e-10
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	8e-10
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	1e-09
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2vli_A	183	Antibiotic resistance protein; transferase, tunica	1e-06
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	3e-05
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	1e-04
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	2e-04
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	6e-04

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Length = 250

 Score =  240 bits (615), Expect = 1e-79
 Identities = 116/238 (48%), Positives = 162/238 (68%), Gaps = 4/238 (1%)

Query: 52  LVPAHVSKDSNAHDVESGTF--CDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTT 109
           +    VS  +++  +E+G+       + + +LK K  EV   L+G+ ++LVGMMGSGKTT
Sbjct: 4   MRLRSVSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTT 63

Query: 110 VGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSL-VPQQV 168
           VG+I++ +L YTF D D  +E+ M GTSVA+IF+  GE+ FRE E++AL+KLSL   Q V
Sbjct: 64  VGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVV 123

Query: 169 VATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLL-DYDSADSYTKAF 227
           V+TGGGAV+RP+NW++M +GI+++L+VPL+ALA RIAAVGT S PLL D +S D+YT A 
Sbjct: 124 VSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAAL 183

Query: 228 TALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285
             LS +   R EAY  A A VSL N+   +G + V D+TP  IA+E   Q Q YL  +
Sbjct: 184 NRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 241

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Length = 199

 Score =  167 bits (426), Expect = 6e-52
 Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 18/188 (9%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +FL G MG+GKTT+G+  +  L+  F D D Y+E+     +V ++F E GEA FRE E  
Sbjct: 28  IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFRELERN 86

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLL 215
            L +++     V++TGGGA     N  FM + G TVFLNV  D L RR+        P+L
Sbjct: 87  MLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRI-AKQQRPIL 145

Query: 216 DYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVL 275
                D   +    +    ++R+  Y  A                +  ++         +
Sbjct: 146 QGKEDD---ELMDFIIQALEKRAPFYTQAQYIF------------NADELEDRWQIESSV 190

Query: 276 VQAQKYLN 283
            + Q+ L 
Sbjct: 191 QRLQELLE 198

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Length = 185

 Score =  166 bits (422), Expect = 2e-51
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 21/189 (11%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           ++L+G+MG+GKT+VG  L+        DSDK +EK  G   +A IF+  GEA FR  E +
Sbjct: 8   IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFRRRERE 66

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLL 215
            ++ L  +   ++ATGGG V+   N + + + G+ ++L   +D   +RI   G    PL 
Sbjct: 67  MIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLF 126

Query: 216 DYDSADSYTKAFTALSALSKERSEAY-ANADATVSLLNLAACIGLKDVLDITPTTIAMEV 274
                +S  K    L  L++ R   Y A AD                  D+ P  +A ++
Sbjct: 127 --IKNNSKEK----LQQLNEIRKPLYQAMADLVY------------PTDDLNPRQLATQI 168

Query: 275 LVQAQKYLN 283
           LV  ++  +
Sbjct: 169 LVDIKQTYS 177

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Length = 184

 Score =  160 bits (407), Expect = 3e-49
 Identities = 53/192 (27%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
             LVG+ GSGK+T+G  L+ AL     D+D  +E+   G S+A IF   GE  FR  E  
Sbjct: 5   AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ-RTGRSIADIFATDGEQEFRRIEED 63

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLD 216
            ++        V++ GGGAV  P     +     V+L +      RR    G    PLL 
Sbjct: 64  VVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTG--GNTVRPLL- 120

Query: 217 YDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVL 275
               D   K      AL  +R+  Y   A   V            D     P  +   +L
Sbjct: 121 -AGPDRAEK----YRALMAKRAPLYRRVATMRV------------DTNRRNPGAVVRHIL 163

Query: 276 VQAQKYLNSKRR 287
            + Q    S+  
Sbjct: 164 SRLQVPSPSEAA 175

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Length = 168

 Score =  159 bits (405), Expect = 4e-49
 Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 12/154 (7%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           ++L+G M SGK+TVG +LS +L+  F D D+ V+K  G  S+ QIF++ GEAYFR+ E +
Sbjct: 3   IYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFE 61

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLL 215
            L+ LS     V++TGGG         FM+  G TVF+++P +    R     +   PLL
Sbjct: 62  VLKDLSEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCK--DSKERPLL 119

Query: 216 DYDSADSYTKAFTALSALSKERSEAYANADATVS 249
                    +    +  L +ER + Y+ AD  V 
Sbjct: 120 K----RPLDE----IKNLFEERRKIYSKADIKVK 145

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Length = 173

 Score =  156 bits (398), Expect = 5e-48
 Identities = 56/156 (35%), Positives = 78/156 (50%), Gaps = 11/156 (7%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +F+VG  G G TTVG  L+ AL Y F D+D +++    G +VA +    G   FR  ES+
Sbjct: 5   IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFRRRESE 63

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSF-PL 214
           ALQ ++  P +VVATGGG V+   N +FMR  G  V+L  P + LA R+ A       P 
Sbjct: 64  ALQAVAT-PNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPT 122

Query: 215 LDYDSADSYTKAFTALSALSKERSEAYAN-ADATVS 249
           L              + A+ +ER   Y + A   V 
Sbjct: 123 LTGRPIAE------EMEAVLREREALYQDVAHYVVD 152

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Length = 173

 Score =  156 bits (396), Expect = 1e-47
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 22/181 (12%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +FLVG MG+GK+T+G  L+  L+  F DSD+ +EK  G   V  +F   GE  FR+ E K
Sbjct: 7   IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEK 65

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLL 215
            + +L+     V+ATGGG+V        +   G+ V+L   ++    R         PLL
Sbjct: 66  VINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQ--RDKKRPLL 123

Query: 216 DYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEV 274
             +     T     L AL+ ER+  Y   AD T+               D +   +A ++
Sbjct: 124 HVE-----TPPREVLEALANERNPLYEEIADVTI------------RTDDQSAKVVANQI 166

Query: 275 L 275
           +
Sbjct: 167 I 167

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Length = 175

 Score =  148 bits (377), Expect = 6e-45
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 28/192 (14%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +  +G MGSGK+T+   L+  LD  F DSD  +E+      V++IF++  E +FRE E K
Sbjct: 7   IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF-NQKVSEIFEQKRENFFREQEQK 65

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLL 215
                S   +  +ATGGG V    N   + + G  ++L    + L +R+        PL 
Sbjct: 66  MADFFSSCEKACIATGGGFV----NVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLF 121

Query: 216 DYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEV 274
             +              L  ER   Y   A+  +            ++ +     +  E+
Sbjct: 122 YDEI---------KAKKLYNERLSKYEQKANFIL------------NIENKNIDELLSEI 160

Query: 275 LVQAQKYLNSKR 286
               ++  +   
Sbjct: 161 KKVIKEGGSHHH 172

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Length = 168

 Score =  146 bits (370), Expect = 7e-44
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           L L+G MGSGK+++ + L  AL     D+D  + + + G SV +IF+E GE  FR +E  
Sbjct: 10  LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKN 68

Query: 157 ALQKLSLVPQ-QVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLL 215
            + +L  +    V++TGGG V+          G T +L +  + L +R+     +  PLL
Sbjct: 69  LIDELKTLKTPHVISTGGGIVMHENLK---GLGTTFYLKMDFETLIKRLNQKEREKRPLL 125

Query: 216 DYDSADSYTKAFTALSALSKERSEAYAN-ADATV 248
                       T    L ++R   Y   A   +
Sbjct: 126 ---------NNLTQAKELFEKRQALYEKNASFII 150

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 19/133 (14%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKY------VEKLMGGTSVAQIFKESGEAYF 150
           + L G     K+TV   LS  L Y       +       EKL       ++  E      
Sbjct: 4   IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEH--FNKLADEDNVIID 61

Query: 151 REYESKALQKLSLVPQQVVATGGGAV----VRPLNWRFMRQGITVFLNVPLDALARRIAA 206
           R   S  +                 +    +R +  +   +   V+L+     + +R+  
Sbjct: 62  RFVYSNLVYAKKFK-------DYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRV 114

Query: 207 VGTDSFPLLDYDS 219
            G +     D DS
Sbjct: 115 RGDEYIEGKDIDS 127

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 62.0 bits (150), Expect = 8e-12
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 16/146 (10%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           + L G  G GKTT+G+ L+      + +      +          + E  +    + +  
Sbjct: 14  ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY----DGYDEEYDCPILDEDRV 69

Query: 157 ALQKLSLVPQQ-VVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLL 215
             +  + + +  V+    G    P  W      I   L    + L  R+   G +   L 
Sbjct: 70  VDELDNQMREGGVIVDYHGCDFFPERWF----HIVFVLRTDTNVLYERLETRGYNEKKLT 125

Query: 216 DYDSADSYTKAFTALSALSKERSEAY 241
           D    +           L +E + +Y
Sbjct: 126 DNIQCE-------IFQVLYEEATASY 144

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 3/124 (2%)

Query: 86  REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIF--K 143
           + + +    + + ++G+ GSGKTT+   ++D     FA++D +       T    I    
Sbjct: 21  QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTD 80

Query: 144 ESGEAYFREYESKALQKLSLVPQQVVATGG-GAVVRPLNWRFMRQGITVFLNVPLDALAR 202
           E    + R        +       ++         R +          + L+ P + +  
Sbjct: 81  EDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKG 140

Query: 203 RIAA 206
           R++ 
Sbjct: 141 RMSK 144

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 55.8 bits (134), Expect = 8e-10
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 3/113 (2%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI--FKESGEAYFREYE 154
             L+G+ GSGK+ V   ++  L   F D D    +       +      +  + + +   
Sbjct: 11  YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALN 70

Query: 155 SKALQKLSLVPQQVVATGGG-AVVRPLNWRFMRQGITVFLNVPLDALARRIAA 206
             A          ++         R L          ++L    D +  R+ A
Sbjct: 71  DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKA 123

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 19/124 (15%)

Query: 96  CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYES 155
            + + G   +GKTT+ + L+  L       D + E +  G         S   + R   +
Sbjct: 7   LIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLG------WSDREWSRRVGA 60

Query: 156 KALQKLSLVPQQVVATGGGAVV------RPLNWRFMR-------QGITVFLNVPLDALAR 202
            A+  L      ++ +G   ++           R            I +      D L  
Sbjct: 61  TAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVE 120

Query: 203 RIAA 206
           RI +
Sbjct: 121 RILS 124

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 51.2 bits (122), Expect = 5e-08
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           + ++G+ GSGK++VGE +++A  Y F + D              I         R     
Sbjct: 21  IVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPL---TDDDRWPWLA 77

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQG-----ITVFLNVPLDALARRIAA 206
           A+ +     + VV +     ++      +R+        VFL+     LA R+  
Sbjct: 78  AIGERLASREPVVVSCSA--LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHH 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 41/281 (14%), Positives = 82/281 (29%), Gaps = 84/281 (29%)

Query: 29  RQQTQQHFINLNPLKLKRHRTLN----LVPAHVSKDSNAHDVESGTFCDSLDGKWLLKAK 84
           + + +Q  +       +R R  N        +VS+      +           + LL+ +
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR----------QALLELR 148

Query: 85  GREVASCLDGQCLFLVGMMGSGKTT-VGEILSDALDYTFADSDKYVEKLMGGTSVAQIFK 143
                     + + + G++GSGKT    ++               V+  M      +IF 
Sbjct: 149 --------PAKNVLIDGVLGSGKTWVALDVC----------LSYKVQCKMDF----KIF- 185

Query: 144 ESGEAY--FREYES-----KALQKLSL-VPQQVVATGGGAVVRPLNWRFMRQGITVFLNV 195
                +   +   S     + LQKL   +     +    +    L    ++  +   L  
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 196 P--------LDAL--ARRIAA--------VGTDSFPLLDYDSADSYTKAFTALSALSKER 237
                    L  +  A+   A        + T    + D+ SA + T             
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS------LDHH 294

Query: 238 SEAYANADATVSLLNLAACIGLK------DVLDITPTTIAM 272
           S      D   SL  L   +  +      +VL   P  +++
Sbjct: 295 SMTL-TPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSI 332

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 21/138 (15%)

Query: 97  LFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYES 155
           +++ G  G GKT     L + L      + ++  + L   T              +E+  
Sbjct: 8   IWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGF-------SGDPQEHPM 60

Query: 156 KALQKLSLVPQQVVATGGGAVV-----RPLNWRFMRQGIT--------VFLNVPLDALAR 202
                L  +        G  +V          R +  G+           L  PL+ +  
Sbjct: 61  WIPLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLE 120

Query: 203 RIAAVGTDSFPLLDYDSA 220
           R+   G     +   +  
Sbjct: 121 RLRRDGQPQVNVGTVEDR 138

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 15/121 (12%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYT-FADSDKYVEKLMGGTSVAQIFKESGEAYFREYES 155
             + G  G GK+T  + L+  LD + + + D     ++GG        E     ++    
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64

Query: 156 KALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGI----------TVFLNVPLDALARRIA 205
                  L+ Q  V      +  P     + Q +           + L    + L RR A
Sbjct: 65  LT--VNFLLAQNDVVLDY--IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120

Query: 206 A 206
            
Sbjct: 121 L 121

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 97  LFLVGMMGSGKTTVGEILSDALD-YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYES 155
           + + G  G+GKT++ E+++  LD +   +  K V++    T               + E 
Sbjct: 13  ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELD--THIIEEKDED 70

Query: 156 KALQKLSLVPQQVVATGGGAVVRPLNWRFMRQG---ITVFLNVPLDALARRIAA 206
           + L  +    + ++ + G  VV   +     +    + V L+   + L  R+  
Sbjct: 71  RLLDFM----EPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTK 120

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 32/152 (21%), Positives = 46/152 (30%), Gaps = 14/152 (9%)

Query: 92  LDGQCLFLVGMMGSGKTTVGEILSDALDYTFA--DSDKYVEKLMGGTSVAQIFKESGEAY 149
           L G  L L G  GSGK+T+ E L++          SD     +  G  +     +S +  
Sbjct: 7   LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHG-RIDPWLPQSHQQN 65

Query: 150 FREYE--SKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGIT----VFLNVPLDALARR 203
               +  +    + +     V+  G   VVRP               + L         R
Sbjct: 66  RMIMQIAADVAGRYAKEGYFVILDG---VVRPDWLPAFTALARPLHYIVLRTTAAEAIER 122

Query: 204 IAAVGTDSFPLLDYDSADSYTKAFTALSALSK 235
               G DS  L D          F  L A   
Sbjct: 123 CLDRGGDS--LSDPLVVADLHSQFADLGAFEH 152

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 11/128 (8%)

Query: 97  LFLVGMMGSGKTT-VGEILSDALDYTFADSDKYVEKLMGGTSVAQ-IFKESGEAYFREYE 154
           +  +G  GSGK+T   E ++    +   + D Y + +M      +  + +  E      +
Sbjct: 5   ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64

Query: 155 SKALQKL---SLVPQQVV--ATGGGAVVR-PLNWRFMRQG---ITVFLNVPLDALARRIA 205
               + +       + V+   T      R          G        +VP   L +R +
Sbjct: 65  FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124

Query: 206 AVGTDSFP 213
             GT + P
Sbjct: 125 KRGTKAVP 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	100.0
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.97
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.95
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.92
1via_A	175	Shikimate kinase; structural genomics, transferase	99.91
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.91
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.91
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.88
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.86
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.83
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.8
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.75
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.75
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.75
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.71
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.7
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.69
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.69
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.69
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.68
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.68
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.67
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.66
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.66
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.66
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.65
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.65
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.65
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.65
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.64
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.62
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.62
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.62
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.61
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.61
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.61
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.61
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.59
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.59
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.59
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.59
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.58
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.56
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.56
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.52
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.5
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.5
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.49
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.47
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.46
1g6h_A	257	High-affinity branched-chain amino acid transport	99.45
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.45
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.45
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.44
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.42
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.42
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.42
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.42
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.42
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.41
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.41
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.41
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.41
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.4
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.4
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.4
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.4
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.39
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.39
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.39
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.38
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.38
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.38
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.38
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.38
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.38
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.37
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.37
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.37
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.37
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.36
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.36
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.36
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.36
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.35
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.35
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.35
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.35
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.33
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.33
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.33
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.33
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.32
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.32
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.31
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.31
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.3
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.3
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.29
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.29
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.29
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.28
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.28
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.27
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.24
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.22
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.21
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.21
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.21
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.21
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.2
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.19
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.19
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.18
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.18
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.17
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.16
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.14
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.14
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.14
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.14
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.13
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.13
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.12
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.09
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.09
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.08
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.07
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.06
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.05
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.05
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.01
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.0
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.99
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.95
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.94
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.94
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.93
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.93
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.91
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.91
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.89
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.88
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.87
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.87
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.86
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.86
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.84
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.83
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.83
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.81
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.78
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.76
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.74
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.74
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.74
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.72
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.72
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.7
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.7
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.7
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.69
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.62
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.57
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.57
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.55
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.52
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.5
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.5
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.49
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.49
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.48
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.48
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.46
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.45
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.45
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.44
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.43
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.43
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.4
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.38
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.37
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.36
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.36
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.33
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.31
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.31
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.29
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.27
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.23
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.22
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.22
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.19
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.18
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.14
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.12
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.12
2og2_A	359	Putative signal recognition particle receptor; nuc	98.11
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.1
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.08
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.06
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.06
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.05
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.03
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.02
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.02
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.01
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.01
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.97
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.96
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.95
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.95
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.95
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.94
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.91
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.91
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.91
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.9
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.9
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.88
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.85
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.83
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.83
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.79
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.79
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.78
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.77
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.76
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.74
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.73
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.73
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.71
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.7
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.68
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.67
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.65
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.65
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.65
3ice_A	422	Transcription termination factor RHO; transcriptio	97.61
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.61
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.59
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.58
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.57
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.57
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.52
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.52
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.52
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.51
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.49
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.45
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.4
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.39
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.37
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.37
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.36
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.33
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.33
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.31
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.22
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.22
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.2
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.14
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.14
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.13
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.1
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.1
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.09
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.04
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.03
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.03
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.02
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.97
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.97
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.93
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.93
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.91
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.88
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.85
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.81
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.81
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.81
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.79
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.77
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.75
3bos_A	242	Putative DNA replication factor; P-loop containing	96.74
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.73
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.73
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.72
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.72
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.71
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.69
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.68
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.67
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.66
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.66
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.66
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.65
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.65
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.65
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.64
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.64
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.64
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.63
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.63
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.63
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.61
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.6
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.55
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.54
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.53
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.52
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.52
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.52
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.52
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.52
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.51
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.51
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.5
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.49
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.48
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.48
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.48
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.47
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.43
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.42
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.41
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.29
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.28
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.27
3pvs_A	447	Replication-associated recombination protein A; ma	96.24
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.23
3co5_A	143	Putative two-component system transcriptional RES	96.22
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.21
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.2
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.19
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.16
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.16
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.14
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.12
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.12
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.12
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.11
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.11
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.09
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.08
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.08
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.07
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.05
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.05
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.04
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.03
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.01
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.01
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.0
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.99
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.99
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.99
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.98
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.96
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.96
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.93
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.92
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.9
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.9
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.88
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.88
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.87
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.87
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.85
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.84
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.84
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.83
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.83
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.82
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.81
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.8
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.79
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.79
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.78
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.76
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.75
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.74
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.74
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.74
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	95.73
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.72
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.71
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.71
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.71
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.7
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.68
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.67
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.66
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.65
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.64
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.63
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.59
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.59
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.58
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.57
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.57
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.57
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.56
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.55
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.55
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.55
2qgz_A	308	Helicase loader, putative primosome component; str	95.54
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.53
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.51
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.51
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.47
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.46
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.45
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.45
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.44
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.44
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.44
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.43
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.42
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.41
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.4
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.4
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.38
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.36
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.36
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.35
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.35
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.34
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.34
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.33
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.33
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.33
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.32
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.31
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.3
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.29
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.29
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.29
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.28
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.27
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.26
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.23
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.21
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.21
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.2
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.2
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.2
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.18
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.17
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.15
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.15
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.1
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.08
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.08
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.08
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.03
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.02
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.01
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.01
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.0
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.0
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.98
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.97
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.96
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.94
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.94
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.93
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	94.92
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.92
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.9
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.89
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.88
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.88
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.86
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.86
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	94.85
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	94.85
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.84
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.84
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.81
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	94.8
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	94.76
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.74
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.73

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-39  Score=293.39  Aligned_cols=222  Identities=51%  Similarity=0.829  Sum_probs=179.5

Q ss_pred             ccEEEcce-EEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           64 HDVESGTF-CDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        64 ~~l~~~~l-~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      ++++++|+ +++| ++..+|+++||++.+++.|++|+|+|+|||||||++++|++.+++.|+|+|.+++....|.++.++
T Consensus        16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i   95 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEI   95 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHH
T ss_pred             CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHH
Confidence            47999999 9999 778899999999998888999999999999999999999999999999999999887669999999


Q ss_pred             hhhhchhhhhhhHHHHHHHhhcC-CCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCC-CC
Q 023118          142 FKESGEAYFREYESKALQKLSLV-PQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDY-DS  219 (287)
Q Consensus       142 ~~~~g~~~fr~~e~~~l~~l~~~-~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~-~~  219 (287)
                      |...|+..||..|.++++++... .+.|+++|||++.++.++..++.+++|||++|++++++|+..++...||++.. ..
T Consensus        96 ~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~  175 (250)
T 3nwj_A           96 FEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDES  175 (250)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC--------------
T ss_pred             HHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCc
Confidence            99999999999999999988765 68899999999999999999988999999999999999998654457998875 23


Q ss_pred             cchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhhc
Q 023118          220 ADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK  285 (287)
Q Consensus       220 ~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~  285 (287)
                      .+.+.+.++.+.+++++|.|+|+.+|++|++++++.+.++|||++++|++++++|++.+..+++++
T Consensus       176 ~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~  241 (250)
T 3nwj_A          176 GDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE  241 (250)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            333444567899999999999999999999999999999999999999999999999999988754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=8.8e-31  Score=226.56  Aligned_cols=185  Identities=30%  Similarity=0.416  Sum_probs=154.1

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHH
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA  157 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~  157 (287)
                      ..+++++||++.+   |++|+|+||+||||||+++.|++.+++.|+|.|.+++... |.++.++|...|+..||..+.++
T Consensus        12 ~~~~~~~~~~~~~---~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~-g~~i~~~~~~~~~~~~~~~e~~~   87 (199)
T 3vaa_A           12 DLGTENLYFQSNA---MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF-HKTVGELFTERGEAGFRELERNM   87 (199)
T ss_dssp             ------------C---CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCC---CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh-CCcHHHHHHhcChHHHHHHHHHH
Confidence            4589999999999   9999999999999999999999999999999999998887 99999999999999999999999


Q ss_pred             HHHhhcCCCeEEecCCceEeccccHHhhcC-CcEEEEecCHHHHHHHHh-hcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118          158 LQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIA-AVGTDSFPLLDYDSADSYTKAFTALSALSK  235 (287)
Q Consensus       158 l~~l~~~~~~via~ggG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~-~~~~~~RPll~~~~~~~~~~~~~~l~~l~~  235 (287)
                      ++.+......|+++|||.+..+.++..+.+ +.+|||++|++++.+|+. .+  ..||++...+.+   +..+.+.++++
T Consensus        88 l~~l~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~--~~Rp~~~~~~~~---~~~~~i~~~~~  162 (199)
T 3vaa_A           88 LHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAK--QQRPILQGKEDD---ELMDFIIQALE  162 (199)
T ss_dssp             HHHHTTCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTG--GGCGGGTTCCHH---HHHHHHHHHHH
T ss_pred             HHHHhhcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCC--CCCCCcCCCChh---hHHHHHHHHHH
Confidence            999887778899999999999998888865 899999999999999998 44  358887654322   23467899999


Q ss_pred             HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      +|.|.|+.+|++|            ||++++|++++++|++.++++++
T Consensus       163 ~r~~~y~~ad~~I------------dt~~~s~ee~~~~I~~~l~~~l~  198 (199)
T 3vaa_A          163 KRAPFYTQAQYIF------------NADELEDRWQIESSVQRLQELLE  198 (199)
T ss_dssp             HHHHHHTTSSEEE------------ECCCCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhCCEEE------------ECCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999888875            89999999999999999998874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.95  E-value=1e-27  Score=203.50  Aligned_cols=171  Identities=31%  Similarity=0.503  Sum_probs=148.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      +..|+|+||+||||||+++.|+..+++.|+|+|.++++.. |.++.++|...|+..||..+.+++..+......++++||
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg   83 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT-GADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG   83 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-CCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence            5789999999999999999999999999999999998887 999999999999999999999999998877788999999


Q ss_pred             ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118          174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL  251 (287)
Q Consensus       174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~  251 (287)
                      |++..+.+++.|+. +.+|||++|++++.+|+.......||++...      ...+.+.+++.+|.|.|+. +|++|   
T Consensus        84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~------~~~~~l~~~~~~r~~~y~~~ad~~I---  154 (185)
T 3trf_A           84 GVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKN------NSKEKLQQLNEIRKPLYQAMADLVY---  154 (185)
T ss_dssp             TGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCH------HHHHHHHHHHHHHHHHHHHHCSEEE---
T ss_pred             ceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCC------CHHHHHHHHHHHHHHHHhhcCCEEE---
Confidence            99999988888875 8999999999999999943333468877531      1236789999999999987 88876   


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          252 NLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                               ||++++|++++++|++.+..++.
T Consensus       155 ---------dt~~~~~~e~~~~I~~~l~~~~~  177 (185)
T 3trf_A          155 ---------PTDDLNPRQLATQILVDIKQTYS  177 (185)
T ss_dssp             ---------ECTTCCHHHHHHHHHHHSCC---
T ss_pred             ---------ECCCCCHHHHHHHHHHHHHHHhh
Confidence                     88989999999999999877654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.92  E-value=3.7e-25  Score=185.51  Aligned_cols=167  Identities=32%  Similarity=0.485  Sum_probs=131.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      |..|+|+|||||||||++++|++.+++.|+|+|.++.+.. |.++..+|...|+..|+..+..++..+....+.++++|+
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~-~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~   82 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG   82 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh-CcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence            6789999999999999999999999999999999988776 888888888889999998888888888776777888888


Q ss_pred             ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118          174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL  251 (287)
Q Consensus       174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~  251 (287)
                      |.+..+.+++.++. +++|||++|++.+.+|+..+.  .||++...+..     .+.+..++.+|.|.|.. +|++    
T Consensus        83 ~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~--~r~~~~~~~~~-----~~~~~~~~~~r~~~~~~~a~~~----  151 (173)
T 1kag_A           83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDK--KRPLLHVETPP-----REVLEALANERNPLYEEIADVT----  151 (173)
T ss_dssp             TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC--------CCSSSSCCC-----HHHHHHHHHHHHHHHHHHCSEE----
T ss_pred             eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCC--CCCCCCCCCch-----HHHHHHHHHHHHHHHHhhCCEE----
Confidence            87777777777765 899999999999999998753  47776532210     25678889999999986 7765    


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          252 NLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                              |||++.++++++++|.+.+.+
T Consensus       152 --------id~~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A          152 --------IRTDDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             --------C-----CHHHHHHHHHHHHC-
T ss_pred             --------EECCCCCHHHHHHHHHHHHHh
Confidence                    488888999999999988754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.91  E-value=3.9e-24  Score=180.55  Aligned_cols=160  Identities=28%  Similarity=0.442  Sum_probs=134.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      .+|+|+|++||||||+++.|+..++++|+|+|.++++.. |.++.++|...|+..||..+..+++.+......|+++|+|
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~   83 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF-NQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   83 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH-TSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc-CCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence            369999999999999999999999999999999998876 8999998888899999999888888887667788999998


Q ss_pred             eEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccc
Q 023118          175 AVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLN  252 (287)
Q Consensus       175 ~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~  252 (287)
                      .+.. .+   |+ .+.+|||++|++.+.+|+..+....||....         .+.+.+.+.+|.|.|.. ++++|    
T Consensus        84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~---------~~~i~~~~~~r~~~y~~~~~~~I----  146 (175)
T 1via_A           84 FVNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYD---------EIKAKKLYNERLSKYEQKANFIL----  146 (175)
T ss_dssp             GGGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCC---------HHHHHHHHHHHHHHHHHHCSEEE----
T ss_pred             Eehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCccc---------HHHHHHHHHHHHHHHHhcCCEEE----
Confidence            8876 44   44 3899999999999999987652124665431         25688899999999976 77664    


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          253 LAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       253 ~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                              ||++++|++++++|++.+..
T Consensus       147 --------dt~~~~~eev~~~I~~~l~~  166 (175)
T 1via_A          147 --------NIENKNIDELLSEIKKVIKE  166 (175)
T ss_dssp             --------ECTTCCHHHHHHHHHHHHC-
T ss_pred             --------ECCCCCHHHHHHHHHHHHHh
Confidence                    89989999999999988753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.91  E-value=1.3e-23  Score=175.92  Aligned_cols=158  Identities=31%  Similarity=0.506  Sum_probs=127.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCe-EEecC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQ-VVATG  172 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~-via~g  172 (287)
                      .++|+|+|++||||||+++.|+..++++|+|+|.++++.. |.++.+++...|+..|+..+.+++..++...+. |+++|
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g   85 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG   85 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh-CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence            5789999999999999999999999999999999998887 899999988889999999998888888766677 88888


Q ss_pred             CceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEec
Q 023118          173 GGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSL  250 (287)
Q Consensus       173 gG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~  250 (287)
                      +|.+.. .+   |+. +.+|||++|++.+.+|+..+....||...    + .    +++.+.+.+|.+.|.. +|++|  
T Consensus        86 ~g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~----~-~----~~~~~~~~~r~~~~~~~a~~~I--  150 (168)
T 1zuh_A           86 GGIVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN----N-L----TQAKELFEKRQALYEKNASFII--  150 (168)
T ss_dssp             GGGGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CC----T-T----HHHHHHHHHHHHHHHHTCSEEE--
T ss_pred             CCEech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCcc----C-H----HHHHHHHHHHHHHHHHHCCEEE--
Confidence            887766 33   443 78999999999999999765312466543    1 1    4577888899999987 78775  


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHH
Q 023118          251 LNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       251 ~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                                |++. ++++++++|.+.+
T Consensus       151 ----------d~~~-~~e~~~~~I~~~l  167 (168)
T 1zuh_A          151 ----------DARG-GLNNSLKQVLQFI  167 (168)
T ss_dssp             ----------EGGG-CHHHHHHHHHHC-
T ss_pred             ----------ECCC-CHHHHHHHHHHHh
Confidence                      7887 9999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.91  E-value=1.1e-23  Score=178.66  Aligned_cols=166  Identities=30%  Similarity=0.398  Sum_probs=138.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      +.+|+|+|++||||||+++.|+..++++|+|+|.++++.. |.++.++|...|+..|+..+..+++++......|+.+|+
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~   80 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG   80 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc-CCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence            3569999999999999999999999999999999998887 888888888889999999888888887665677889999


Q ss_pred             ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccc
Q 023118          174 GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLN  252 (287)
Q Consensus       174 G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~  252 (287)
                      |+++++.++..+..+.+|||++|++.+.+|+..+.  .||+....  +.    .+.+..++..|.+.|.. +|++|    
T Consensus        81 ~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~--~r~~~~~~--~~----~~~i~~~~~~r~~~~~~~~~~~I----  148 (184)
T 2iyv_A           81 GAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNT--VRPLLAGP--DR----AEKYRALMAKRAPLYRRVATMRV----  148 (184)
T ss_dssp             TGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCC--CCSSTTSC--CH----HHHHHHHHHHHHHHHHHHCSEEE----
T ss_pred             cEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCC--CCCCccCC--CH----HHHHHHHHHHHHHHHhccCCEEE----
Confidence            98888777877766799999999999999998653  46765432  11    25678888899999976 77765    


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          253 LAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       253 ~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                              |++..++++++++|++.+..
T Consensus       149 --------dt~~~s~ee~~~~I~~~l~~  168 (184)
T 2iyv_A          149 --------DTNRRNPGAVVRHILSRLQV  168 (184)
T ss_dssp             --------ECSSSCHHHHHHHHHTTSCC
T ss_pred             --------ECCCCCHHHHHHHHHHHHhh
Confidence                    88888999999999887653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.88  E-value=3e-22  Score=167.53  Aligned_cols=164  Identities=35%  Similarity=0.529  Sum_probs=135.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      ..|+|+|++||||||+++.|+..++++|+|+|.++.+.. |.++.+++...|+..|+..+..+++.+. ....|+.+|+|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~   80 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG   80 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh-CCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc
Confidence            479999999999999999999999999999999998876 8888888877888899988888888877 55678888988


Q ss_pred             eEeccccHHhhcC-CcEEEEecCHHHHHHHHh--hcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEecc
Q 023118          175 AVVRPLNWRFMRQ-GITVFLNVPLDALARRIA--AVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLL  251 (287)
Q Consensus       175 ~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~--~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~  251 (287)
                      .+..+.++..|+. +.+|||++|++.+.+|+.  .+. ..||....   +   ...+++.+.+..|.+.|..+|++|   
T Consensus        81 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~-~~r~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~I---  150 (173)
T 1e6c_A           81 MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQA-HQRPTLTG---R---PIAEEMEAVLREREALYQDVAHYV---  150 (173)
T ss_dssp             GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCS-CCCCCTTH---H---HHHHHHHHHHHHHHHHHHHHCSEE---
T ss_pred             EEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCC-CCCCcCCC---C---CHHHHHHHHHHHHHHHHHhCcEEE---
Confidence            8887777777764 899999999999999998  662 23665431   1   224568888899999998777765   


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          252 NLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       252 ~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                               |+++.++++++++|.+.+.
T Consensus       151 ---------d~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A          151 ---------VDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             ---------EETTSCHHHHHHHHHHHTT
T ss_pred             ---------ECCCCCHHHHHHHHHHHhc
Confidence                     7888899999999988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.86  E-value=3.6e-21  Score=160.37  Aligned_cols=161  Identities=35%  Similarity=0.589  Sum_probs=130.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      .|+|+|++||||||+++.|+..++++|+|+|.+..... |..+.+++...|+..|+..+..++..+......|+++|+|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~   80 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE-GLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGL   80 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc-CCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCE
Confidence            68999999999999999999999999999999998887 88999888888989998888888888875567788888777


Q ss_pred             EeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccc
Q 023118          176 VVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLA  254 (287)
Q Consensus       176 v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a  254 (287)
                      +..+.++..+++ +.+|||++|++.+.+|+..+.  .||...    +..    +.+.+.|.++.+.|..+|++       
T Consensus        81 ~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~----~~~----~~i~~~~~~~~~~~~~~~~~-------  143 (168)
T 2pt5_A           81 GANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK--ERPLLK----RPL----DEIKNLFEERRKIYSKADIK-------  143 (168)
T ss_dssp             HTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT--CCBGGG----SCG----GGTHHHHHHHHHHHTTSSEE-------
T ss_pred             eCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC--CCCCCc----chH----HHHHHHHHHHHHHHHhCCEE-------
Confidence            766667777764 799999999999999987653  466543    111    34667778888888767665       


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHH
Q 023118          255 ACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       255 ~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                           | ++..++++++++|.+.+.+
T Consensus       144 -----i-~~~~~~~~~~~~i~~~l~~  163 (168)
T 2pt5_A          144 -----V-KGEKPPEEVVKEILLSLEG  163 (168)
T ss_dssp             -----E-ECSSCHHHHHHHHHHHHHT
T ss_pred             -----E-CCCCCHHHHHHHHHHHHHh
Confidence                 4 4557999999999988764

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.83  E-value=4.2e-20  Score=161.08  Aligned_cols=169  Identities=12%  Similarity=0.081  Sum_probs=113.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhh--hh------------------
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAY--FR------------------  151 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~--fr------------------  151 (287)
                      ..+|+|.|++||||||+++.||..|+++|+| +.+++...  .|.++ +.|...++..  |+                  
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            4589999999999999999999999999999 77765432  36664 4455555543  33                  


Q ss_pred             hhHHHHHHHhh--cCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHH
Q 023118          152 EYESKALQKLS--LVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTA  229 (287)
Q Consensus       152 ~~e~~~l~~l~--~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~  229 (287)
                      ..+.+++++++  ...++|+...+|.+..+.+    ..+++|||++|++.+++|+..+.  .+         ++.++.+.
T Consensus        84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~----~~~~~V~L~A~~e~r~~R~~~~~--~~---------~~~~~~~~  148 (201)
T 3fdi_A           84 IRQFNFIRKKANEEKESFVIVGRCAEEILSDN----PNMISAFILGDKDTKTKRVMERE--GV---------DEKTALNM  148 (201)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEESTTHHHHTTTC----TTEEEEEEEECHHHHHHHHHHHH--TC---------CHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEECCcchhcCCC----CCeEEEEEECCHHHHHHHHHHHh--CC---------CHHHHHHH
Confidence            46788899998  7677777653443333332    23689999999999999997542  11         12345678


Q ss_pred             HHHHHHHHHhhhhhC-CeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          230 LSALSKERSEAYANA-DATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       230 l~~l~~~R~~~Y~~a-d~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      +.++.++|.++|+.+ +.  +-.+.+..+.+|||+.++++++++.|++.++..
T Consensus       149 i~~~d~~R~~~y~~~~~~--~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~  199 (201)
T 3fdi_A          149 MKKMDKMRKVYHNFYCES--KWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR  199 (201)
T ss_dssp             HHHHHHHHHHHHHHHCSS--CTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCC--CCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence            899999999999863 21  122333344457999999999999999998753

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.80  E-value=3e-19  Score=158.51  Aligned_cols=169  Identities=17%  Similarity=0.174  Sum_probs=113.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCchhhhhhhhchh------------------------
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSVAQIFKESGEA------------------------  148 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i~~~~~~~g~~------------------------  148 (287)
                      ..+|+|.|++||||||+++.||..++++|+|.|.+.+... .|.+... |...++.                        
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~   92 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQF-FRLADEKAGNNLLYRLGGGRKIDLHSKPSPN   92 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHH-HHHHHhhccccHHHHHhcccccccccccccc
Confidence            3589999999999999999999999999999665432221 3555432 2222221                        


Q ss_pred             -------hhhhhHHHHHHHhhcCCCeEEe-cCCceEec--cccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCC
Q 023118          149 -------YFREYESKALQKLSLVPQQVVA-TGGGAVVR--PLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYD  218 (287)
Q Consensus       149 -------~fr~~e~~~l~~l~~~~~~via-~ggG~v~~--~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~  218 (287)
                             ..+..+.+++++++...++|+. +|||.|++  +.+    .++++|||++|++.+++|+..+.  .+|.    
T Consensus        93 ~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~~--~~~~----  162 (223)
T 3hdt_A           93 DKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEVD--CIDE----  162 (223)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHHHHH--TCCH----
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHHHhc--CCCH----
Confidence                   1123456788888876777776 78887763  333    23789999999999999997642  2332    


Q ss_pred             CcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          219 SADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       219 ~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                           .++.+.+.+++++|.++|+. .+.  +-.+.+..+.+|||+.++++++++.|++.++.
T Consensus       163 -----~~a~~~I~~~d~~R~~~Y~~ytg~--~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~  218 (223)
T 3hdt_A          163 -----ERAKRRIKKIEKERKEYYKYFTGS--EWHSMKNYDLPINTTKLTLEETAELIKAYIRL  218 (223)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHSS--CTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHcCC--CCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence                 34567899999999999983 111  11122222233699999999999999999875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.76  E-value=7.9e-19  Score=149.71  Aligned_cols=170  Identities=15%  Similarity=0.164  Sum_probs=107.1

Q ss_pred             ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc-cCCccccchhHHHHHhCCCchhhhhhhhchhhhh--hhHHHHHH
Q 023118           83 AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA-LDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFR--EYESKALQ  159 (287)
Q Consensus        83 ~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~-l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr--~~e~~~l~  159 (287)
                      ++|+...+   +..|+|+|++||||||+++.|+.. ++++|+|+|.++++..    +.+.+.......|+  ..+..+++
T Consensus         2 ~~~~~~~~---~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~~~   74 (184)
T 1y63_A            2 PGSMEQPK---GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH----FYTEYDTELDTHIIEEKDEDRLLD   74 (184)
T ss_dssp             ----CCCS---SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT----CSCC------CCCCCHHHHHHHHH
T ss_pred             CcCcCCCC---CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh----hhhhHHHHhhhcccCCCCHHHHHH
Confidence            46777777   899999999999999999999999 7999999999986641    11111111222232  23333344


Q ss_pred             HhhcCCCeEEecCCceEeccccHHhhc---CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          160 KLSLVPQQVVATGGGAVVRPLNWRFMR---QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       160 ~l~~~~~~via~ggG~v~~~~~~~~L~---~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                      .+..    ++.++||.+....++..+.   .+.+|||++|++++.+|+..|+ ..+|.+..    ..  ..+.+..++.+
T Consensus        75 ~l~~----~~~~~g~~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~-~~~~~~~~----~~--~~q~~~~l~~~  143 (184)
T 1y63_A           75 FMEP----IMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQ-YSEAKRAE----NM--EAEIQCICEEE  143 (184)
T ss_dssp             HHHH----HHTSSSEEEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTT-CCHHHHHH----HH--HHHHTTHHHHH
T ss_pred             HHHH----HHhccCCEEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCC-CChhhhHh----hH--HHHHHHHHHHH
Confidence            3321    2212345555555555554   2689999999999999999874 24554321    00  01125666889


Q ss_pred             HHhhhhhCCeEEeccccccccccccCCCCCHHHH---HHHHHHHHHHHhh
Q 023118          237 RSEAYANADATVSLLNLAACIGLKDVLDITPTTI---AMEVLVQAQKYLN  283 (287)
Q Consensus       237 R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~ev---a~~i~~~i~~~l~  283 (287)
                      |.+.|. +|++|            ||++.+++++   +.+|++.++.+..
T Consensus       144 ~~~~y~-~~~vi------------~~n~~~~~~~~~~v~~i~~~l~~~~~  180 (184)
T 1y63_A          144 ARDAYE-DDIVL------------VRENDTLEQMAATVEEIRERVEVLKV  180 (184)
T ss_dssp             HHHHSC-GGGEE------------EEECSSHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhc-cCcEE------------ECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999997 56654            6666799999   7777777665543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.75  E-value=1.5e-17  Score=143.43  Aligned_cols=161  Identities=14%  Similarity=0.208  Sum_probs=109.9

Q ss_pred             eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHH
Q 023118           86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQK  160 (287)
Q Consensus        86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~  160 (287)
                      +...+   |++|+|+|||||||||+++.|++.+|..++|+|.+.     .....|..+.+.   .....++..+..+...
T Consensus        24 m~~~~---g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~   97 (200)
T 4eun_A           24 MTGEP---TRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDE---DRWPWLRSLAEWMDAR   97 (200)
T ss_dssp             ----C---CCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHH---HHHHHHHHHHHHHHHH
T ss_pred             hcCCC---CcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCc---ccccHHHHHHHHHHHH
Confidence            34456   899999999999999999999999999999999873     222235444332   2334455555555554


Q ss_pred             hhcCCCeEEecCCceEeccccHHhhcC----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          161 LSLVPQQVVATGGGAVVRPLNWRFMRQ----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       161 l~~~~~~via~ggG~v~~~~~~~~L~~----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                      +......|+.++.   ..+..++.+..    ..+|||++|++++.+|+..|+.+..+      .       +.+...++.
T Consensus        98 ~~~g~~viid~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~------~-------~~l~~~~~~  161 (200)
T 4eun_A           98 ADAGVSTIITCSA---LKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMP------A-------SLLQSQLAT  161 (200)
T ss_dssp             HHTTCCEEEEECC---CCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSC------G-------GGHHHHHHH
T ss_pred             HhcCCCEEEEchh---hhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCC------H-------HHHHHHHHH
Confidence            4444455666542   23555555653    47899999999999999876432111      1       336677888


Q ss_pred             HHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          237 RSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       237 R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      +++.|.. ++++            ||++. ++++++++|.+.+...
T Consensus       162 ~~~~~~~~~~~~------------Id~~~-~~~e~~~~I~~~l~~~  194 (200)
T 4eun_A          162 LEALEPDESGIV------------LDLRQ-PPEQLIERALTWLDIA  194 (200)
T ss_dssp             CCCCCTTSCEEE------------EETTS-CHHHHHHHHHHHHCCC
T ss_pred             hCCCCCCCCeEE------------EECCC-CHHHHHHHHHHHHHhc
Confidence            8999986 5655            47865 9999999999988643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.75  E-value=5.4e-18  Score=152.04  Aligned_cols=169  Identities=18%  Similarity=0.203  Sum_probs=101.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCCCchhh------hhh-------hh---------c
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGGTSVAQ------IFK-------ES---------G  146 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G~~i~~------~~~-------~~---------g  146 (287)
                      |.+|+|+||+||||||++++|+..|++.|+|+|.++...     ..|.++.+      +..       ..         +
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  106 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILEG  106 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEECC
Confidence            899999999999999999999999999999999997332     24665532      100       00         0


Q ss_pred             ---hhhhhhhHHH-HHHHhhc---------CCCeEEecCCceEeccccHHh--hcC-CcEEEEecCHHHHHHHHhhcCCC
Q 023118          147 ---EAYFREYESK-ALQKLSL---------VPQQVVATGGGAVVRPLNWRF--MRQ-GITVFLNVPLDALARRIAAVGTD  210 (287)
Q Consensus       147 ---~~~fr~~e~~-~l~~l~~---------~~~~via~ggG~v~~~~~~~~--L~~-g~~I~L~~~~e~l~~Ri~~~~~~  210 (287)
                         .+..+..+.. .+..++.         ..+..+++++|+|+...+...  +.. +++|||++|++++++|+..... 
T Consensus       107 ~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~~~~~~~ifl~A~~e~r~~R~~~~l~-  185 (252)
T 4e22_A          107 EDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRMLQLQ-  185 (252)
T ss_dssp             EECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCSTTCSEEEEEECCHHHHHHHHHHHHH-
T ss_pred             eehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceeceeecCCCCEEEEEECCHHHHHHHHHHHHH-
Confidence               0111111110 0111110         001124556777777665543  233 7899999999999999753100 


Q ss_pred             CCCCcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          211 SFPLLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       211 ~RPll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      .+.     ....+    +.+.+.+.+|+         |++..+|..+           |||+++++++++++|++.++..
T Consensus       186 ~~~-----~~~~~----~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~-----------Idts~~~~eev~~~I~~~i~~~  245 (252)
T 4e22_A          186 ERG-----FNVNF----ERLLAEIQERDNRDRNRSVAPLVPAADALV-----------LDSTSMSIEQVIEQALAYAQRI  245 (252)
T ss_dssp             HHT-----CCCCH----HHHHHHHC------------CCCCCTTEEE-----------EECSSSCHHHHHHHHHHHHHHH
T ss_pred             hcC-----CCCCH----HHHHHHHHHHHHHhhhccccchhccCCeEE-----------EECcCCCHHHHHHHHHHHHHHH
Confidence            000     01122    23333344444         4444455444           7999999999999999999876


Q ss_pred             hh
Q 023118          282 LN  283 (287)
Q Consensus       282 l~  283 (287)
                      +.
T Consensus       246 ~~  247 (252)
T 4e22_A          246 LA  247 (252)
T ss_dssp             CC
T ss_pred             hh
Confidence            54

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.75  E-value=1.9e-17  Score=138.93  Aligned_cols=155  Identities=16%  Similarity=0.248  Sum_probs=103.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      |++|+|+|++||||||+++.|++.++..++|+|.+.     .+...|..+.+   ..+...++..+..+...+......|
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v   84 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND---DDRKPWLQALNDAAFAMQRTNKVSL   84 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCc---cccccHHHHHHHHHHHHHhcCCcEE
Confidence            899999999999999999999999999999999873     22223655443   2345556655543332222333456


Q ss_pred             EecCCceEeccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhh-hhh
Q 023118          169 VATGGGAVVRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEA-YAN  243 (287)
Q Consensus       169 ia~ggG~v~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~-Y~~  243 (287)
                      +.+|+   ..+.+++.+++ +   .+|||++|++.+.+|+..|+.+..      . .      ..+...+..+.+. |..
T Consensus        85 i~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~------~-~------~~~~~~~~~~~~~~~~~  148 (175)
T 1knq_A           85 IVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF------K-T------QMLVTQFETLQEPGADE  148 (175)
T ss_dssp             EECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC------C-H------HHHHHHHHHCCCCCTTC
T ss_pred             EEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCC------c-h------HHHHHHHHhhhCcccCC
Confidence            66654   24455666654 3   699999999999999987643210      0 1      1233334444555 654


Q ss_pred             -CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          244 -ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       244 -ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                       +|++            ||++ .++++++++|++.+..
T Consensus       149 ~~~~~------------Id~~-~~~~~~~~~i~~~l~~  173 (175)
T 1knq_A          149 TDVLV------------VDID-QPLEGVVASTIEVIKK  173 (175)
T ss_dssp             TTEEE------------EECS-SCHHHHHHHHHHHHHC
T ss_pred             CCeEE------------EeCC-CCHHHHHHHHHHHHhc
Confidence             5555            4787 6999999999988753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.71  E-value=6.8e-18  Score=142.56  Aligned_cols=158  Identities=18%  Similarity=0.269  Sum_probs=108.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhh--HHHHHHHhhcCCCeEEec
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREY--ESKALQKLSLVPQQVVAT  171 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~--e~~~l~~l~~~~~~via~  171 (287)
                      +..|+|+|++||||||+++.|+..+++.|++.|.++.+..       ++...++..++..  +..++..+..    ++++
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   79 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-------LYDGYDEEYDCPILDEDRVVDELDN----QMRE   79 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-------CEEEEETTTTEEEECHHHHHHHHHH----HHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-------hhhhhhhhhcCccCChHHHHHHHHH----HHhc
Confidence            6789999999999999999999999999999999986652       2333344444432  2223333321    2334


Q ss_pred             CCceEeccccHHhhc---CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEE
Q 023118          172 GGGAVVRPLNWRFMR---QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATV  248 (287)
Q Consensus       172 ggG~v~~~~~~~~L~---~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v  248 (287)
                      |+. |+...+...+.   .+.+|||++|++++.+|+..++ ..+|....      ....+.+..++++|.+.|. ++.++
T Consensus        80 g~~-vv~~~~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~-~~~~~~~~------~~~~~~~~~~~~~~~~~y~-~~~~i  150 (180)
T 3iij_A           80 GGV-IVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRG-YNEKKLTD------NIQCEIFQVLYEEATASYK-EEIVH  150 (180)
T ss_dssp             CCE-EEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTT-CCHHHHHH------HHHHHHTTHHHHHHHHHSC-GGGEE
T ss_pred             CCE-EEEechhhhcchhcCCEEEEEECCHHHHHHHHHHcC-CCHHHHHH------HHHHHHHHHHHHHHHHHcC-CCeEE
Confidence            433 33444444554   3689999999999999998874 23454321      0112557788999999997 45554


Q ss_pred             eccccccccccccCCCCCHHHH---HHHHHHHHHHHhh
Q 023118          249 SLLNLAACIGLKDVLDITPTTI---AMEVLVQAQKYLN  283 (287)
Q Consensus       249 ~~~~~a~~~~~idt~~~t~~ev---a~~i~~~i~~~l~  283 (287)
                                  |++..+|+++   +..|+..++++..
T Consensus       151 ------------~~~~~~~~ev~~~v~~i~~~l~~~~~  176 (180)
T 3iij_A          151 ------------QLPSNKPEELENNVDQILKWIEQWIK  176 (180)
T ss_dssp             ------------EEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------EcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                        6778999999   7788888777654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.70  E-value=9.8e-17  Score=136.22  Aligned_cols=169  Identities=17%  Similarity=0.221  Sum_probs=108.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      +..|+|+|++||||||+++.|+..+++.|+|.|.++.... .    |..+.+++. .|+..++......+.+....   .
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~---~   84 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVA---K   84 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHH---H
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHh---c
Confidence            7899999999999999999999999999999999887642 1    334445543 35544544433333322110   0


Q ss_pred             EecCCceEecc--ccHH---h----hc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH
Q 023118          169 VATGGGAVVRP--LNWR---F----MR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS  238 (287)
Q Consensus       169 ia~ggG~v~~~--~~~~---~----L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~  238 (287)
                      ...|+++|++.  .+..   .    +. .+.+|||++|++.+.+|+..++. .++...    +.......++...+..+.
T Consensus        85 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~~~~~~----~~~~~~~~r~~~~~~~~~  159 (196)
T 2c95_A           85 VNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE-TSGRVD----DNEETIKKRLETYYKATE  159 (196)
T ss_dssp             TTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHT-SSSCGG----GSHHHHHHHHHHHHHHTH
T ss_pred             cccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCC-cCCCCC----CCHHHHHHHHHHHHHHHH
Confidence            01233444432  2221   1    23 36899999999999999987642 122221    111223456777778888


Q ss_pred             hh---hhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          239 EA---YANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       239 ~~---Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                      |+   |..++..+          +||++ .++++++++|.+.+++.+
T Consensus       160 ~~~~~~~~~~~~~----------~Id~~-~~~e~v~~~i~~~l~~~~  195 (196)
T 2c95_A          160 PVIAFYEKRGIVR----------KVNAE-GSVDSVFSQVCTHLDALL  195 (196)
T ss_dssp             HHHHHHHHHTCEE----------EEECC-SCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCcEE----------EEECC-CCHHHHHHHHHHHHHHhc
Confidence            76   55455433          25776 799999999999998765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.69  E-value=2e-17  Score=146.21  Aligned_cols=165  Identities=19%  Similarity=0.223  Sum_probs=105.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchh------------------------hhhhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVA------------------------QIFKE  144 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~------------------------~~~~~  144 (287)
                      |.+|+|+|++||||||+++.|++.++++|+|+|.++....     .|.++.                        +++ .
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~-~   94 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF-V   94 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE-E
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe-E
Confidence            8899999999999999999999999999999999976521     465421                        111 2


Q ss_pred             hchhhhhhhHHHHHH--------------HhhcCCCeEEecCCceEeccccHH--hhcC-CcEEEEecCHHHHHHHHhhc
Q 023118          145 SGEAYFREYESKALQ--------------KLSLVPQQVVATGGGAVVRPLNWR--FMRQ-GITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       145 ~g~~~fr~~e~~~l~--------------~l~~~~~~via~ggG~v~~~~~~~--~L~~-g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      .|+..+|..+.+.+.              .+.. ....+++|+|+|+.+.++.  ++.. +++|||++|++++++|+..+
T Consensus        95 ~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~-~~~~~~~~~~~v~~g~~~~~~~l~~~d~vi~L~a~~e~~~~R~~~~  173 (236)
T 1q3t_A           95 GDVDITHPIRENEVTNHVSAIAAIPEVREKLVS-LQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKE  173 (236)
T ss_dssp             TTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHH-HHHHHHTTSCEEEECSSCSSSSGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred             CCcCchhhhccHHHHHHHHHHccCHHHHHHHHH-HHHHhcccCCEEEECCcchhhhccCCCEEEEEECCHHHHHHHHHHH
Confidence            455444433221111              1110 0113345667777655443  3433 78999999999999997321


Q ss_pred             CCCCCCCcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          208 GTDSFPLLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       208 ~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      . ..||...     ..    +.+.+.+.+|+         |+|..+|..+           ||++++++++++++|.+.+
T Consensus       174 ~-~~R~~~~-----~~----e~~~~~i~~R~~~~~~~~~~p~~~~~d~~v-----------Id~~~~s~eev~~~I~~~l  232 (236)
T 1q3t_A          174 N-IAKGIET-----DL----ETLKKEIAARDYKDSHRETSPLKQAEDAVY-----------LDTTGLNIQEVVEKIKAEA  232 (236)
T ss_dssp             H-HHTTCCC-----CH----HHHHHHHHHHHHHHTTCSSSCCSCCTTCEE-----------EECSSCCHHHHHHHHHHHH
T ss_pred             H-HhcCCCC-----CH----HHHHHHHHHHhhhhhhcccccccccCCEEE-----------EcCCCCCHHHHHHHHHHHH
Confidence            0 1133211     11    34555666663         5665555333           6899899999999999988


Q ss_pred             HHH
Q 023118          279 QKY  281 (287)
Q Consensus       279 ~~~  281 (287)
                      +..
T Consensus       233 ~~~  235 (236)
T 1q3t_A          233 EKR  235 (236)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.69  E-value=1.7e-17  Score=144.16  Aligned_cols=166  Identities=14%  Similarity=0.170  Sum_probs=107.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCC--Cchhhh-------hh----------hhchhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGG--TSVAQI-------FK----------ESGEAY  149 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G--~~i~~~-------~~----------~~g~~~  149 (287)
                      +..|+|+|++||||||+++.|+..++++|+|+|.+++..     ..|  ..+.++       |.          ..|+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~~   82 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDV   82 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCccc
Confidence            568999999999999999999999999999999997642     123  344443       21          245555


Q ss_pred             hhhhHHHHHHHh----hcC---------CCeEEecCCceEeccccHH--hhcC-CcEEEEecCHHHHHHHHhhcCCCCCC
Q 023118          150 FREYESKALQKL----SLV---------PQQVVATGGGAVVRPLNWR--FMRQ-GITVFLNVPLDALARRIAAVGTDSFP  213 (287)
Q Consensus       150 fr~~e~~~l~~l----~~~---------~~~via~ggG~v~~~~~~~--~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RP  213 (287)
                      ++..+...+.+.    ...         .+.++++|+|+|+.+.++.  +++. +++|||++|++.+.+|+..+. ..||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~~~~~~~~~~vi~l~a~~e~~~~R~~~~~-~~r~  161 (219)
T 2h92_A           83 TDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDN-QLRG  161 (219)
T ss_dssp             GGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHH-HHTT
T ss_pred             hhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCccceecCCCCEEEEEECCHHHHHHHHHHHH-HhcC
Confidence            444322221110    000         0123456677777765443  4443 789999999999999974310 0134


Q ss_pred             CcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          214 LLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       214 ll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      +..     ..    +.+.+.+++|.         |.|..+|..+           ||++++++++++++|.+.++.
T Consensus       162 ~~~-----~~----e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~-----------Id~~~~~~ee~~~~I~~~l~~  217 (219)
T 2h92_A          162 IES-----NF----EDLKRDIEARDQYDMNREISPLRKADDAVT-----------LDTTGKSIEEVTDEILAMVSQ  217 (219)
T ss_dssp             CCC-----CH----HHHHHHHHHHHHHHHHCSSSCSCCCTTCEE-----------EECTTCCHHHHHHHHHHHHHT
T ss_pred             ccc-----CH----HHHHHHHHHHHHhhhhhhccccccCCCeEE-----------EECCCCCHHHHHHHHHHHHhc
Confidence            311     11    34556666665         7777666333           589989999999999988763

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.69  E-value=1.4e-16  Score=139.11  Aligned_cols=167  Identities=16%  Similarity=0.209  Sum_probs=111.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      |..|+|+|++||||||+++.|+..+++.++++|+++++..     -|..+.+++.. |...++....+++......    
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~----   79 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKFDL----   79 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHHHT----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhc----
Confidence            6789999999999999999999999999999999987663     15556666543 5566666666665543221    


Q ss_pred             EecCCceEec--ccc------HH-hhc-C----CcEEEEecCHHHHHHHHhhcCCC-----------------------C
Q 023118          169 VATGGGAVVR--PLN------WR-FMR-Q----GITVFLNVPLDALARRIAAVGTD-----------------------S  211 (287)
Q Consensus       169 ia~ggG~v~~--~~~------~~-~L~-~----g~~I~L~~~~e~l~~Ri~~~~~~-----------------------~  211 (287)
                      +++|+|.|++  +.+      +. .+. .    ..+|||++|++++.+|+..+..+                       .
T Consensus        80 ~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~  159 (217)
T 3be4_A           80 GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTG  159 (217)
T ss_dssp             TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTC
T ss_pred             cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccc
Confidence            1245555554  222      12 222 1    37999999999999999876421                       1


Q ss_pred             CCCcCCCCcchhhHHHHHHHHHHHHHHhh---hhhCCeEEeccccccccccccCCCCCHHHHHHHHHHH
Q 023118          212 FPLLDYDSADSYTKAFTALSALSKERSEA---YANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQ  277 (287)
Q Consensus       212 RPll~~~~~~~~~~~~~~l~~l~~~R~~~---Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~  277 (287)
                      +|++... .+..+...+++...++.+.|+   |...+..+.          ||.+ .++++|+++|.+.
T Consensus       160 ~~l~~~~-dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~----------id~~-~~~~~v~~~i~~~  216 (217)
T 3be4_A          160 EPLVWRD-DDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKR----------VNAK-LPPKEVTEQIKKI  216 (217)
T ss_dssp             CBCBCCG-GGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEE----------EETT-SCHHHHHHHHHHH
T ss_pred             cccccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE----------EECC-CCHHHHHHHHHhh
Confidence            4554321 223333345666666777776   776443332          5775 6999999999875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.68  E-value=3.3e-16  Score=129.27  Aligned_cols=158  Identities=14%  Similarity=0.088  Sum_probs=101.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC--CC---c----hhhhhhhhchhhhhhhHHHHHHHhhcCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG--GT---S----VAQIFKESGEAYFREYESKALQKLSLVP  165 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~--G~---~----i~~~~~~~g~~~fr~~e~~~l~~l~~~~  165 (287)
                      ..|+|+||+||||||+++.| ..+++.+++.|.++.+...  |.   .    ...++...|...++....+.++.  ...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~   78 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH   78 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence            37999999999999999999 9999999999988876541  11   1    11223334666665554444421  233


Q ss_pred             CeEEecCCceEeccccHHhhcC-----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH--H-
Q 023118          166 QQVVATGGGAVVRPLNWRFMRQ-----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE--R-  237 (287)
Q Consensus       166 ~~via~ggG~v~~~~~~~~L~~-----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~--R-  237 (287)
                      ..++.+|-   ..+..+..+.+     ..+|||++|++++.+|+..|+   +|..    ....    +.+.+.+..  + 
T Consensus        79 ~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~---~~~~----~~~~----~~~~~r~~~~~~~  144 (179)
T 3lw7_A           79 DLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERL---RSDD----SKEI----SELIRRDREELKL  144 (179)
T ss_dssp             SCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-----------CCCH----HHHHHHHHHHHHH
T ss_pred             CeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcc---CCCC----cchH----HHHHHHHHhhhcc
Confidence            45666653   44555555543     278999999999999998764   3311    1112    223333221  2 


Q ss_pred             -Hhhhh-hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          238 -SEAYA-NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       238 -~~~Y~-~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                       .+.|. .+|++|            |+++ ++++++++|.+.+...+
T Consensus       145 ~~~~~~~~ad~vI------------d~~~-~~~~~~~~i~~~l~~~l  178 (179)
T 3lw7_A          145 GIGEVIAMADYII------------TNDS-NYEEFKRRCEEVTDRVL  178 (179)
T ss_dssp             THHHHHHTCSEEE------------ECCS-CHHHHHHHHHHHHHHHC
T ss_pred             ChHhHHHhCCEEE------------ECCC-CHHHHHHHHHHHHHHHh
Confidence             22343 478775            6666 99999999999998765

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.68  E-value=1.3e-16  Score=133.86  Aligned_cols=156  Identities=14%  Similarity=0.045  Sum_probs=99.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc--chhHHHHHhCC--------CchhhhhhhhchhhhhhhHHHH---HHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD--SDKYVEKLMGG--------TSVAQIFKESGEAYFREYESKA---LQK  160 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid--~d~~ie~~~~G--------~~i~~~~~~~g~~~fr~~e~~~---l~~  160 (287)
                      +..|+|+|+|||||||+++.|+..++..|++  .|.+++... +        .++.+.+...++..||..+...   ++.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMP-LKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSC-GGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcc-hhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            6789999999999999999999999988875  787765432 3        2233333334566777666544   344


Q ss_pred             hhcCCCeEEecCC---ceEeccccHHhhcC-C-cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118          161 LSLVPQQVVATGG---GAVVRPLNWRFMRQ-G-ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK  235 (287)
Q Consensus       161 l~~~~~~via~gg---G~v~~~~~~~~L~~-g-~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~  235 (287)
                      +......||..+.   +....+.+++.++. + .+|||++|++++.+|+..++  .||+...         ..++     
T Consensus        82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~--~~~~~~~---------~~~~-----  145 (178)
T 1qhx_A           82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG--DRVAGMA---------AKQA-----  145 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS--SSCTTHH---------HHHT-----
T ss_pred             HHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC--Ccccchh---------hhhc-----
Confidence            4433334444431   11112234455554 4 57899999999999998764  3554310         0111     


Q ss_pred             HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      ++...|..+|++            |||++++|++++++|++.+
T Consensus       146 ~~~~~~~~~d~~------------idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          146 YVVHEGVEYDVE------------VDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             TGGGTTCCCSEE------------EETTSSCHHHHHHHHHTTC
T ss_pred             hhhccCCCCcEE------------EECCCCCHHHHHHHHHHHh
Confidence            111224446765            4899999999999998754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.67  E-value=5e-16  Score=135.43  Aligned_cols=170  Identities=17%  Similarity=0.201  Sum_probs=109.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhc-CCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSL-VPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~-~~~~  167 (287)
                      |..|+|+|++||||||+++.|+..++..|+++|+++.+.. .    |..+.+++. .|...++.....++.+... ..  
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~--   80 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNP--   80 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCG--
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhcc--
Confidence            7789999999999999999999999999999999987652 2    333444543 3444555555555554332 11  


Q ss_pred             EEecCCceEecc--ccHH-------hhc-C----CcEEEEecCHHHHHHHHhhcCCC-----------------------
Q 023118          168 VVATGGGAVVRP--LNWR-------FMR-Q----GITVFLNVPLDALARRIAAVGTD-----------------------  210 (287)
Q Consensus       168 via~ggG~v~~~--~~~~-------~L~-~----g~~I~L~~~~e~l~~Ri~~~~~~-----------------------  210 (287)
                        ++|+|.|++.  .+..       .+. .    ..+|||++|++.+.+|+..+..+                       
T Consensus        81 --~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~  158 (220)
T 1aky_A           81 --ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVT  158 (220)
T ss_dssp             --GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTT
T ss_pred             --ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccc
Confidence              2445555542  2221       222 1    37999999999999999876321                       


Q ss_pred             CCCCcCCCCcchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          211 SFPLLDYDSADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       211 ~RPll~~~~~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      .||++...+ +.......++...++.+.|   .|...+..+.          ||.+ .++++|+++|.+.+.+
T Consensus       159 ~~~l~~r~d-d~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~----------id~~-~~~~~v~~~i~~~l~~  219 (220)
T 1aky_A          159 GEALVQRSD-DNADALKKRLAAYHAQTEPIVDFYKKTGIWAG----------VDAS-QPPATVWADILNKLGK  219 (220)
T ss_dssp             CCBCBCCTT-CSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEE----------EETT-SCHHHHHHHHHHHHTC
T ss_pred             ccccccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE----------EECC-CCHHHHHHHHHHHHhc
Confidence            245554321 2222223566666667777   6765443332          5765 5999999999988753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.66  E-value=1.4e-15  Score=126.06  Aligned_cols=152  Identities=16%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec---
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT---  171 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~---  171 (287)
                      ..|+|+|++||||||+++.|+..+++.|+|+|.+.....   .+..+|.             ....+... ..++..   
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~---~~~~~~~-------------~~~~l~~~-~~vi~dr~~   64 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS---GNEKLFE-------------HFNKLADE-DNVIIDRFV   64 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT---CHHHHHH-------------HHHHHTTC-CSEEEESCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh---HHHHHHH-------------HHHHHHhC-CCeEEeeee
Confidence            379999999999999999999999999999998874322   1222221             11111111 112211   


Q ss_pred             --------C--CceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          172 --------G--GGAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       172 --------g--gG~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                              +  +........+..+.     .+.+|||++|++++.+|+..++   ||...   .    +.++.+.+.|++
T Consensus        65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~---r~~~~---~----~~~~~~~~~~~~  134 (173)
T 3kb2_A           65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG---DEYIE---G----KDIDSILELYRE  134 (173)
T ss_dssp             HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS---CSCCC---H----HHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC---Ccchh---h----hHHHHHHHHHHH
Confidence                    0  01112222333332     3689999999999999998763   55443   1    234678889999


Q ss_pred             HHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhhc
Q 023118          237 RSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK  285 (287)
Q Consensus       237 R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~  285 (287)
                      +.+.|..++++            ||+++.++++++++|.+.++++...+
T Consensus       135 ~~~~~~~~~~~------------id~~~~~~~ev~~~I~~~~~~~~~~~  171 (173)
T 3kb2_A          135 VMSNAGLHTYS------------WDTGQWSSDEIAKDIIFLVELEHHHH  171 (173)
T ss_dssp             HHHTCSSCEEE------------EETTTSCHHHHHHHHHHHHHHGGGCC
T ss_pred             HHhhcCCCEEE------------EECCCCCHHHHHHHHHHHHhCCCccc
Confidence            99998755554            58888999999999999999876543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.66  E-value=2.1e-16  Score=136.13  Aligned_cols=172  Identities=16%  Similarity=0.118  Sum_probs=100.5

Q ss_pred             cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc---CCc--cccchhHHHHHhCCCchhhhhh
Q 023118           69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL---DYT--FADSDKYVEKLMGGTSVAQIFK  143 (287)
Q Consensus        69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l---~~~--fid~d~~ie~~~~G~~i~~~~~  143 (287)
                      +|+++.++.....+..++...+   |+.|+|+|||||||||+++.|++.+   |..  |+|+|.+......+....   .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~---g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~---~   76 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQK---GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFK---A   76 (200)
T ss_dssp             -------CCCCHHHHHHHHTSC---CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSS---H
T ss_pred             CCCcccccccCHHHHHHhcCCC---CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcC---h
Confidence            4667777777788888888888   9999999999999999999999999   444  899988752111111110   1


Q ss_pred             hhchhhhhhhHHHHHHHhhcCCCeEEecCCceEeccccHHhhc----C--CcEEEEecCHHHHHHHH------hhcCCCC
Q 023118          144 ESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMR----Q--GITVFLNVPLDALARRI------AAVGTDS  211 (287)
Q Consensus       144 ~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~----~--g~~I~L~~~~e~l~~Ri------~~~~~~~  211 (287)
                      +.....++ ....+...+......++.+..+.  .+..++.++    .  .++|||++|++++++|+      ..+..+.
T Consensus        77 ~~~~~~~~-~~~~~~~~~~~~~~~vi~~~~~~--~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~  153 (200)
T 3uie_A           77 EDRAENIR-RVGEVAKLFADAGIICIASLISP--YRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKI  153 (200)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHTTCEEEEECCCC--CHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSS
T ss_pred             HHHHHHHH-HHHHHHHHHHhCCceEEEecCCc--hHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCC
Confidence            11112222 12233333333344455443321  123344333    2  24699999999999996      3332222


Q ss_pred             CCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh---CCeEEeccccccccccccCCC-CCHHHHHHHHHHHHHHH
Q 023118          212 FPLLDYDSADSYTKAFTALSALSKERSEAYAN---ADATVSLLNLAACIGLKDVLD-ITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       212 RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~---ad~~v~~~~~a~~~~~idt~~-~t~~eva~~i~~~i~~~  281 (287)
                      .++..                    .+..|+.   ++++            |||++ +++++++++|++.+...
T Consensus       154 ~~~~~--------------------~~~~~~~~~~~~~~------------idt~~~~~~~e~v~~i~~~l~~~  195 (200)
T 3uie_A          154 KGFTG--------------------IDDPYEPPLNCEIS------------LGREGGTSPIEMAEKVVGYLDNK  195 (200)
T ss_dssp             CSCBT--------------------TTBCCCCCSSCSEE------------ECCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCC--------------------CCCcCcCCCCCCEE------------EecCCCCCHHHHHHHHHHHHHHc
Confidence            22111                    0122432   3443            69998 79999999999998753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.66  E-value=2.2e-16  Score=137.43  Aligned_cols=172  Identities=18%  Similarity=0.221  Sum_probs=98.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhh------hhhh----------------hc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQ------IFKE----------------SG  146 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~------~~~~----------------~g  146 (287)
                      +..|+|+||+||||||++++|++.++++++|+|.++....     .|.++.+      +...                .|
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            4689999999999999999999999999999999976432     3665431      1000                11


Q ss_pred             h---hhhhhhHHH----------HHHHhhcCCCeEEecCCceEeccccHH--hhcC-CcEEEEecCHHHHHHHHhhcCCC
Q 023118          147 E---AYFREYESK----------ALQKLSLVPQQVVATGGGAVVRPLNWR--FMRQ-GITVFLNVPLDALARRIAAVGTD  210 (287)
Q Consensus       147 ~---~~fr~~e~~----------~l~~l~~~~~~via~ggG~v~~~~~~~--~L~~-g~~I~L~~~~e~l~~Ri~~~~~~  210 (287)
                      .   +.++..+..          .+++.......++++++|.++.+.++.  .+.. +++|||++|++++.+|+..+- .
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~~~d~~i~l~~~~e~~~~R~~~~l-~  163 (227)
T 1cke_A           85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQL-Q  163 (227)
T ss_dssp             EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHH-H
T ss_pred             eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEecCCCEEEEEeCCHHHHHHHHHHHH-H
Confidence            1   234432221          111111000111233456665544322  3333 789999999999999954210 0


Q ss_pred             CCCCcCCCCcchhhHHHHHHHH-----HHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          211 SFPLLDYDSADSYTKAFTALSA-----LSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       211 ~RPll~~~~~~~~~~~~~~l~~-----l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                      .|+...     .+++..+++.+     ....+.|+|..++..+           ||+++.++++++++|.+.+.+++
T Consensus       164 ~rg~~~-----~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~-----------Id~~~~~~~ev~~~I~~~l~~~~  224 (227)
T 1cke_A          164 VKGFSV-----NFERLLAEIKERDDRDRNRAVAPLVPAADALV-----------LDSTTLSIEQVIEKALQYARQKL  224 (227)
T ss_dssp             HHTCCC-----CHHHHHHHHC-------------CCCCTTCEE-----------EETTTSCHHHHHHHHHHHHHHHH
T ss_pred             hCCccC-----CHHHHHHHHHHHHHhhhhhcccCccCCCCEEE-----------EeCCCCCHHHHHHHHHHHHHHhh
Confidence            122211     11222233332     1124467776644333           68988899999999999998765

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.65  E-value=2.7e-16  Score=134.69  Aligned_cols=155  Identities=17%  Similarity=0.172  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchh-----------------------hhhhhhch
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVA-----------------------QIFKESGE  147 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~-----------------------~~~~~~g~  147 (287)
                      .|+|+|++||||||+++.|++.++++|+|.|.+.....     .|.+..                       ++| ..|+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~   82 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVL-ADGE   82 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEE-ETTE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEE-ECCe
Confidence            79999999999999999999999999999999876542     244211                       111 2455


Q ss_pred             hhhhhhHHHHHHHhh---cCCCeE----------EecCCceEeccccHH--hhc-CCcEEEEecCHHHHHHHHhhcCCCC
Q 023118          148 AYFREYESKALQKLS---LVPQQV----------VATGGGAVVRPLNWR--FMR-QGITVFLNVPLDALARRIAAVGTDS  211 (287)
Q Consensus       148 ~~fr~~e~~~l~~l~---~~~~~v----------ia~ggG~v~~~~~~~--~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~  211 (287)
                      ..|+..+...+....   ..++.+          ++  +++|+...++.  ++. .+.+|||++|++.+.+|+..+..  
T Consensus        83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~~~~~~~~d~~i~l~a~~e~~~~R~~~r~~--  158 (208)
T 3ake_A           83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERP--  158 (208)
T ss_dssp             ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHTSS--
T ss_pred             eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEccceeEEEecCCcEEEEEECCHHHHHHHHHhhcc--
Confidence            555544333222100   000000          11  33444433322  223 26899999999999999876421  


Q ss_pred             CCCcCCCCcchhhHHHHHHHHHHHHHHhhh----hh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          212 FPLLDYDSADSYTKAFTALSALSKERSEAY----AN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       212 RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y----~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                            .   .    .+++.+.+.+|++.|    .. +|..           +||++++++++++++|.+.++
T Consensus       159 ------~---~----~~~~~~~~~~R~~~~~~~~~~~ad~~-----------~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          159 ------Q---A----YEEVLRDLLRRDERDKAQSAPAPDAL-----------VLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             ------S---C----HHHHHHHHHHHHHTC--CCCCCTTCE-----------EEETTTSCHHHHHHHHHHHHH
T ss_pred             ------c---C----HHHHHHHHHHHHHHHhhcccCCCCEE-----------EEECCCCCHHHHHHHHHHHHh
Confidence                  1   1    145678888999888    33 4522           268998999999999998774

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.65  E-value=2e-15  Score=127.27  Aligned_cols=168  Identities=12%  Similarity=0.132  Sum_probs=102.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHh--CCC--chhhhhhhhchhhhhhhHHHH---HHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLM--GGT--SVAQIFKESGEAYFREYESKA---LQK  160 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~--~G~--~i~~~~~~~g~~~fr~~e~~~---l~~  160 (287)
                      +|..|+|+|++||||||+++.|+..++     +.|++.|+++.+..  .|.  +..+++. ...+.++..+..+   +..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~   80 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAE   80 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHh
Confidence            377999999999999999999999998     89999998765443  243  4444432 1223333333222   333


Q ss_pred             hhcCCCeEEecCCceEeccccH------Hhhc---CCcEEEEecCHHHHHH-HHhhcCCCCCCCcCCCCcchhhHHHHHH
Q 023118          161 LSLVPQQVVATGGGAVVRPLNW------RFMR---QGITVFLNVPLDALAR-RIAAVGTDSFPLLDYDSADSYTKAFTAL  230 (287)
Q Consensus       161 l~~~~~~via~ggG~v~~~~~~------~~L~---~g~~I~L~~~~e~l~~-Ri~~~~~~~RPll~~~~~~~~~~~~~~l  230 (287)
                      +.. ...+|.+|++.+..+..+      ..++   .+++|||++|++++.+ |+.... +.||...   .+... ....+
T Consensus        81 ~~~-~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~-R~r~~~~---~~~~~-~~~~~  154 (192)
T 1kht_A           81 MAK-ESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDET-RVRDLDT---ASTIE-QHQFM  154 (192)
T ss_dssp             HHT-TSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSS-CSSSCCC---HHHHH-HHHHH
T ss_pred             hcc-CCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcc-cCCCcCC---HHHHH-HHHHH
Confidence            332 345777787765444332      2332   3689999999999996 997511 1244332   11111 12345


Q ss_pred             HHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          231 SALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       231 ~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      .+.+..+.+.|..+...+           |+....++++++++|++.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~-----------i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          155 NRCAAMSYGVLTGATVKI-----------VQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHHHHHHHHHCCEEEE-----------EECCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcEEE-----------EeCCCCCHHHHHHHHHHHh
Confidence            556666666675543332           3333346999999998765

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.65  E-value=1.5e-15  Score=132.63  Aligned_cols=175  Identities=14%  Similarity=0.118  Sum_probs=108.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhh----hhh-hHHHHHHHhhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAY----FRE-YESKALQKLSL  163 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~----fr~-~e~~~l~~l~~  163 (287)
                      +..|+|+|++||||||+++.|+..++..|+|.|.++.+..     .|..+.+++. .|+..    +.. .+..+......
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~   83 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFME-KGQLVPDEIVVNMVKERLRQPDAQ   83 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHH-cCCcCCHHHHHHHHHHHHhhcccc
Confidence            5789999999999999999999999999999999887631     1444555543 23222    221 11111111111


Q ss_pred             CCCeEEecCCceEeccccHHhhcC-----CcEEEEecCHHHHHHHHhhcCCCC-------------------CCCcCCCC
Q 023118          164 VPQQVVATGGGAVVRPLNWRFMRQ-----GITVFLNVPLDALARRIAAVGTDS-------------------FPLLDYDS  219 (287)
Q Consensus       164 ~~~~via~ggG~v~~~~~~~~L~~-----g~~I~L~~~~e~l~~Ri~~~~~~~-------------------RPll~~~~  219 (287)
                      ....|+ .|  .+........|..     +++|||++|++.+.+|+..+..+.                   +|+... .
T Consensus        84 ~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r-~  159 (222)
T 1zak_A           84 ENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQR-F  159 (222)
T ss_dssp             HTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCC-T
T ss_pred             CCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccC-C
Confidence            223334 44  1212122333432     589999999999999998653210                   233322 1


Q ss_pred             cchhhHHHHHHHHHHHHHHhhhhhCC-eEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          220 ADSYTKAFTALSALSKERSEAYANAD-ATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       220 ~~~~~~~~~~l~~l~~~R~~~Y~~ad-~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      .+..+....++.+.+.++.|++..++ ..+          +||+ +.++++|+++|.+.+...+..
T Consensus       160 ~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~----------~Id~-~~~~~ev~~~I~~~l~~~l~~  214 (222)
T 1zak_A          160 DDTEEKVKLRLETYYQNIESLLSTYENIIV----------KVQG-DATVDAVFAKIDELLGSILEK  214 (222)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHHHHTTCCCEE----------EEEC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcEE----------EEEC-CCCHHHHHHHHHHHHHhhccc
Confidence            12233344566778888888665432 122          2688 579999999999999887653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.65  E-value=1.6e-15  Score=130.57  Aligned_cols=153  Identities=20%  Similarity=0.238  Sum_probs=96.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhhhh---h--------------HH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFRE---Y--------------ES  155 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~fr~---~--------------e~  155 (287)
                      .+|+|+|++||||||+++.|++ +|+.|+|+|.+.....  ++..+.+++...|...|+.   .              ..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            3799999999999999999999 8999999999875532  2334555555556555431   0              00


Q ss_pred             HHHHH-------------hhcCCCeEEecCCceEecc----ccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCC
Q 023118          156 KALQK-------------LSLVPQQVVATGGGAVVRP----LNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDY  217 (287)
Q Consensus       156 ~~l~~-------------l~~~~~~via~ggG~v~~~----~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~  217 (287)
                      ..+..             +...      .++++|...    ++. +.. -+.+|||++|++++.+|+..|.+  +     
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~------~~~~vv~~~~~l~e~~-~~~~~d~vi~l~~~~e~~~~Rl~~R~~--~-----  147 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQ------TAPYTLFVVPLLIENK-LTALCDRILVVDVSPQTQLARSAQRDN--N-----  147 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC------CSSEEEEECTTTTTTT-CGGGCSEEEEEECCHHHHHHHHC------------
T ss_pred             HHHHhccCHHHHHHHHHHHHhc------CCCEEEEEechhhhcC-cHhhCCEEEEEECCHHHHHHHHHHcCC--C-----
Confidence            01111             1110      122333221    111 122 26899999999999999976421  1     


Q ss_pred             CCcchhhHHHHHHHHHHH---HHHhhhhhCCeEEeccccccccccccCCCCCHH----HHHHHHHHHHHHHhh
Q 023118          218 DSADSYTKAFTALSALSK---ERSEAYANADATVSLLNLAACIGLKDVLDITPT----TIAMEVLVQAQKYLN  283 (287)
Q Consensus       218 ~~~~~~~~~~~~l~~l~~---~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~----eva~~i~~~i~~~l~  283 (287)
                          ..    +.+.+.++   .+.+.|+.||++|            |+++ +++    +++++|.+.+.+++.
T Consensus       148 ----~~----e~~~~r~~~q~~~~~~~~~ad~vI------------dn~~-~~~~~~~~~~~~i~~~~~~~~~  199 (206)
T 1jjv_A          148 ----NF----EQIQRIMNSQVSQQERLKWADDVI------------NNDA-ELAQNLPHLQQKVLELHQFYLQ  199 (206)
T ss_dssp             ----CH----HHHHHHHHHSCCHHHHHHHCSEEE------------ECCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CH----HHHHHHHHhcCChHHHHHhCCEEE------------ECCC-CccccHHHHHHHHHHHHHHHHH
Confidence                11    23444555   4678888888765            7887 999    999999988877654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.64  E-value=4.8e-15  Score=130.66  Aligned_cols=171  Identities=19%  Similarity=0.242  Sum_probs=109.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      +..|+|+|++||||||+++.|+..+++.|+++|+++++.. .    |..+.+++ ..|...++.....++.......   
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~-~~g~~~~~~~~~~~i~~~l~~~---   91 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATM-DAGKLVSDEMVLELIEKNLETP---   91 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHTSG---
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHH-HCCCcCCHHHHHHHHHHHHhcc---
Confidence            6789999999999999999999999999999999987642 1    33444454 2344455555555555433222   


Q ss_pred             EecCCceEec--cccH-------Hhhc-----CCcEEEEecCHHHHHHHHhhcCCC-----------------------C
Q 023118          169 VATGGGAVVR--PLNW-------RFMR-----QGITVFLNVPLDALARRIAAVGTD-----------------------S  211 (287)
Q Consensus       169 ia~ggG~v~~--~~~~-------~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~-----------------------~  211 (287)
                       .+|+|.|++  +.+.       +.+.     .+.+|||++|++++.+|+..|..+                       .
T Consensus        92 -~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~  170 (233)
T 1ak2_A           92 -PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG  170 (233)
T ss_dssp             -GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTC
T ss_pred             -cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccc
Confidence             245566655  3332       1221     268999999999999999876321                       2


Q ss_pred             CCCcCCCCcchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          212 FPLLDYDSADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       212 RPll~~~~~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      +|++...+ +..+....++...++.+.|   .|...+..+          +||++ .++++|+++|.+.++.+
T Consensus       171 ~~l~~r~d-~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~----------~id~~-~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          171 EPLIRRSD-DNKKALKIRLEAYHTQTTPLVEYYSKRGIHS----------AIDAS-QTPDVVFASILAAFSKA  231 (233)
T ss_dssp             CBCEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCEE----------EEETT-SCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE----------EEECC-CCHHHHHHHHHHHHHhh
Confidence            34433211 2222223455554455666   454333222          26887 69999999999998865

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.62  E-value=1e-16  Score=135.73  Aligned_cols=165  Identities=16%  Similarity=0.098  Sum_probs=91.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHH-------HHHhhcCCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA-------LQKLSLVPQ  166 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~-------l~~l~~~~~  166 (287)
                      +..|+|+|++||||||+++.|+..+++.|+++|.+.+...++  +    ...+...++..+...       ++.+.....
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~   78 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDG--L----GWSDREWSRRVGATAIMMLYHTAATILQSGQ   78 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHH--H----CCCSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHh--c----CccchHHHHHhhHHHHHHHHHHHHHHHhCCC
Confidence            789999999999999999999999999999999987665421  1    111223333322211       122111122


Q ss_pred             eEEecCCceEeccc----cHHhhcC-C----cEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          167 QVVATGGGAVVRPL----NWRFMRQ-G----ITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       167 ~via~ggG~v~~~~----~~~~L~~-g----~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                      .++..+..   ...    .+..+.. +    .+|||++|++++.+|+..|+.. .||+.+..  ..|.+ ..++.++++.
T Consensus        79 ~vi~d~~~---~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~--~~~~~-~~~~~~~~~~  152 (193)
T 2rhm_A           79 SLIMESNF---RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCD--DRSPA-DLELVRSRGD  152 (193)
T ss_dssp             CEEEEECC---CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC----------CHH-HHHHHHHSCC
T ss_pred             eEEEecCC---CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCccccc--CccCc-chhhHHHHhc
Confidence            23333221   110    1111332 2    6899999999999999876422 46654321  12211 0135556666


Q ss_pred             HHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          237 RSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       237 R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      +.+.|.. ++++            |||+..++ +++++|++.|...+.
T Consensus       153 ~~~~~~~~~~~~------------Idt~~~~~-~~~~~i~~~i~~~l~  187 (193)
T 2rhm_A          153 IPPLPLGGPLLT------------VDTTFPEQ-IDMNAIVQWVRQHLQ  187 (193)
T ss_dssp             CCCCCCCSCEEE------------EECSSGGG-CCHHHHHHHHHHHHH
T ss_pred             CCCccCCCCEEE------------EeCCCCcc-cCHHHHHHHHHHHHH
Confidence            6677753 4444            57777533 445555555554443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.62  E-value=2.9e-15  Score=126.45  Aligned_cols=164  Identities=17%  Similarity=0.188  Sum_probs=103.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCe
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSLVPQQ  167 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~  167 (287)
                      .|..|+|+|++||||||+++.|+..+++.++|+|.++.+.. .    |..+.++|. .|...++......+.+....  .
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~l~~--~   79 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIME-RGDLVPDDLILELIREELAE--R   79 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHCCS--E
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHhcC--C
Confidence            37899999999999999999999999999999999887652 2    334455554 35566666666666654432  2


Q ss_pred             EEecCCceEeccccHH----hhc-----CCcEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118          168 VVATGGGAVVRPLNWR----FMR-----QGITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALSALSKER  237 (287)
Q Consensus       168 via~ggG~v~~~~~~~----~L~-----~g~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~~l~~~R  237 (287)
                      ++..|-  +.......    ++.     .+.+|||++|++++.+|+..|.. ..|+-.   ..+   ....++...+..+
T Consensus        80 ~i~dg~--~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~---~~~---~~~~r~~~~~~~~  151 (186)
T 3cm0_A           80 VIFDGF--PRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDD---NEE---TVRRRLEVYREKT  151 (186)
T ss_dssp             EEEESC--CCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSC---CHH---HHHHHHHHHHHHH
T ss_pred             EEEeCC--CCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCC---CHH---HHHHHHHHHHHHH
Confidence            444432  11111111    232     14789999999999999987630 013211   111   1224455555565


Q ss_pred             Hhh---hhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          238 SEA---YANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       238 ~~~---Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      .|+   |..++..+          +||++ .++++++++|.+.+
T Consensus       152 ~~l~~~~~~~~~~~----------~id~~-~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          152 EPLVGYYEARGVLK----------RVDGL-GTPDEVYARIRAAL  184 (186)
T ss_dssp             HHHHHHHHHTTCEE----------EEECC-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcEE----------EEECC-CCHHHHHHHHHHHh
Confidence            664   44444222          15765 69999999998876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.62  E-value=3.4e-15  Score=128.27  Aligned_cols=151  Identities=21%  Similarity=0.260  Sum_probs=98.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHH-----HHhCCCchhhhhhhhchhhhhhhHHHHHHHh-hcCCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVE-----KLMGGTSVAQIFKESGEAYFREYESKALQKL-SLVPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie-----~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l-~~~~~~  167 (287)
                      ...|+|+|++||||||+++.|++.+++.++|+|.+..     ....|..+.+.   .....++     .+.+. ......
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~---~~~~~~~-----~l~~~~~~~~~v   89 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDD---DRWPWLA-----AIGERLASREPV   89 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHH---HHHHHHH-----HHHHHHTSSSCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCch---hhHHHHH-----HHHHHHhcCCCE
Confidence            4589999999999999999999999999999998741     11113222211   1122222     12222 222334


Q ss_pred             EEecCCceEeccccHHhhcC-----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118          168 VVATGGGAVVRPLNWRFMRQ-----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA  242 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L~~-----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~  242 (287)
                      |+.++.+   .+..+..+..     ..+|||++|++++.+|+..|..+..|             .+.+...++.+.+.|.
T Consensus        90 ivd~~~~---~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~-------------~~~~~~~~~~~~~~~~  153 (202)
T 3t61_A           90 VVSCSAL---KRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP-------------SSLLQTQLETLEDPRG  153 (202)
T ss_dssp             EEECCCC---SHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC-------------HHHHHHHHHHCCCCTT
T ss_pred             EEECCCC---CHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC-------------HHHHHHHHHhcCCCCC
Confidence            4444432   3344454542     37899999999999999887533222             1345666777777776


Q ss_pred             h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          243 N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       243 ~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      . ++++            ||++ .++++++++|++.+.+.
T Consensus       154 ~~~~~~------------Id~~-~~~~e~~~~I~~~l~~~  180 (202)
T 3t61_A          154 EVRTVA------------VDVA-QPLAEIVREALAGLARL  180 (202)
T ss_dssp             STTEEE------------EESS-SCHHHHHHHHHHHHHHH
T ss_pred             CCCeEE------------EeCC-CCHHHHHHHHHHHHHHh
Confidence            5 4544            5787 79999999999998753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.61  E-value=2.4e-15  Score=127.84  Aligned_cols=169  Identities=14%  Similarity=0.173  Sum_probs=104.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHh----hcC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKL----SLV  164 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l----~~~  164 (287)
                      +..|+|+|++||||||+++.|+..+++.++|.|.++.... .    |..+.+++. .|...++......+.+.    ...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccccc
Confidence            6799999999999999999999999999999999876654 2    333444443 34433433333333221    111


Q ss_pred             CCeEEecCCceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh
Q 023118          165 PQQVVATGGGAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE  239 (287)
Q Consensus       165 ~~~via~ggG~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~  239 (287)
                      ...++..|  .+........+.     .+.+|||++|++.+.+|+..++. .++..    .+..++...++...+..+.|
T Consensus        91 ~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~-~~~~~----~~~~~~~~~r~~~~~~~~~~  163 (199)
T 2bwj_A           91 TRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR-SSLPV----DDTTKTIAKRLEAYYRASIP  163 (199)
T ss_dssp             CSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC-CCSCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             CccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC-CCCCC----CCCHHHHHHHHHHHHHHHHH
Confidence            22343333  111111222221     26899999999999999987642 11111    11122223455556666766


Q ss_pred             ---hhhhCCe-EEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          240 ---AYANADA-TVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       240 ---~Y~~ad~-~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                         .|..++. .+           ||++ .++++++++|.+.+++.+
T Consensus       164 ~~~~~~~~~~~~~-----------id~~-~~~e~v~~~i~~~l~~~~  198 (199)
T 2bwj_A          164 VIAYYETKTQLHK-----------INAE-GTPEDVFLQLCTAIDSIF  198 (199)
T ss_dssp             HHHHHHHHSEEEE-----------EETT-SCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCEEE-----------EECC-CCHHHHHHHHHHHHHHhc
Confidence               5665443 33           5754 699999999999987654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.61  E-value=6.1e-15  Score=126.57  Aligned_cols=161  Identities=14%  Similarity=0.159  Sum_probs=104.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-hCCC----chhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-MGGT----SVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-~~G~----~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      +..|+|+|++||||||+++.|+..+++.+++.|.++.+. ..|.    .+.+++. .|...++......+.+....    
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~----   94 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNN----   94 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTS----
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhc----
Confidence            678999999999999999999999999999999988763 2232    3344432 35555555555555553322    


Q ss_pred             EecCCceEec--cccH-------Hhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118          169 VATGGGAVVR--PLNW-------RFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS  234 (287)
Q Consensus       169 ia~ggG~v~~--~~~~-------~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~  234 (287)
                      ..+|+|+|++  +.++       ..+.     -..+|||++|++++.+|+..|+   ||.      +..+....++...+
T Consensus        95 ~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~---r~~------~~~e~~~~r~~~~~  165 (201)
T 2cdn_A           95 PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---RAD------DTDDVILNRMKVYR  165 (201)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---CTT------CSHHHHHHHHHHHH
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---CCC------CCHHHHHHHHHHHH
Confidence            1345666665  3332       2232     2579999999999999998764   331      11112234455555


Q ss_pred             HHHHhhhhhC-CeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          235 KERSEAYANA-DATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       235 ~~R~~~Y~~a-d~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      ..+.|+++.+ ...+          +||++ .++++++++|.+.++
T Consensus       166 ~~~~~~~~~~~~~~~----------~Id~~-~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          166 DETAPLLEYYRDQLK----------TVDAV-GTMDEVFARALRALG  200 (201)
T ss_dssp             HHTTTHHHHTTTTEE----------EEECC-SCHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHhcCcEE----------EEeCC-CCHHHHHHHHHHHHc
Confidence            5666655431 1111          15775 699999999988763

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.61  E-value=5e-16  Score=154.31  Aligned_cols=163  Identities=13%  Similarity=0.184  Sum_probs=94.3

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC------CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHH
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALD------YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQK  160 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~------~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~  160 (287)
                      .+.+   |++|+|+|+||||||||+++|++.++      ..|+|+|.+.+.+..+.....   ..+...+|. ...+.+.
T Consensus       365 ~~~~---G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~---~~r~~~~r~-i~~v~q~  437 (552)
T 3cr8_A          365 RERQ---GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSK---AHRDVNVRR-IGFVASE  437 (552)
T ss_dssp             GGGS---CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSH---HHHHHHHHH-HHHHHHH
T ss_pred             cccc---ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCH---HHHHHHHHH-HHHHHHH
Confidence            4556   99999999999999999999999985      446898888654321211111   122233443 3456666


Q ss_pred             hhcCCCeEEecCCc--eEeccccHHhhcC-C--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118          161 LSLVPQQVVATGGG--AVVRPLNWRFMRQ-G--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK  235 (287)
Q Consensus       161 l~~~~~~via~ggG--~v~~~~~~~~L~~-g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~  235 (287)
                      +....+.+++++++  ...+..+++.|.. |  ++|||++|++.+.+|+.      ||++....       ...+.+++.
T Consensus       438 l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~------r~l~~~~~-------~~~i~~l~~  504 (552)
T 3cr8_A          438 ITKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR------KGLYAKAR-------AGLIPEFTG  504 (552)
T ss_dssp             HHHTTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------------------------------------
T ss_pred             HHhcCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc------cccccccc-------HhHHHHHHh
Confidence            66556677777653  3334456667765 7  89999999999999953      56654211       134778888


Q ss_pred             HHHhhhh--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          236 ERSEAYA--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       236 ~R~~~Y~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      .|.++|.  .+|++|            ||+..+|++++++|++.+...
T Consensus       505 ~r~~~e~P~~adl~I------------dt~~~s~~e~v~~Il~~L~~~  540 (552)
T 3cr8_A          505 VSDPYEVPETPELAI------------DTTGLAIDEAVQQILLKLEHE  540 (552)
T ss_dssp             --CCCCCCSSCSEEE------------CCSSCCHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCEEE------------ECCCCCHHHHHHHHHHHHHhc
Confidence            9999885  377664            899999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.61  E-value=8.1e-15  Score=123.50  Aligned_cols=167  Identities=14%  Similarity=0.160  Sum_probs=104.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCC----chhhhhhhhchhhhhhhHHHHHHHhhcC--CC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGT----SVAQIFKESGEAYFREYESKALQKLSLV--PQ  166 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~----~i~~~~~~~g~~~fr~~e~~~l~~l~~~--~~  166 (287)
                      +..|+|+|++||||||+++.|+..+++.++|.|.++.+.. .|.    .+.++|. .|...++......+.+....  ..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~~~~   84 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIK-NGEIVPSIVTVKLLKNAIDANQGK   84 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTSTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999999876653 233    3344443 24434444444455443321  12


Q ss_pred             eEEecCCceEeccccHHhh----c----CCcEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118          167 QVVATGGGAVVRPLNWRFM----R----QGITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKER  237 (287)
Q Consensus       167 ~via~ggG~v~~~~~~~~L----~----~g~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~R  237 (287)
                      .++..|  .+.....+..+    .    .+.+|||++|++.+.+|+..|+.. .|+.      +..++...++...++.+
T Consensus        85 ~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~------~~~~~~~~ri~~~~~~~  156 (194)
T 1qf9_A           85 NFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSD------DNIESIKKRFNTFNVQT  156 (194)
T ss_dssp             CEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTT------CSHHHHHHHHHHHHHTH
T ss_pred             CEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCC------CCHHHHHHHHHHHHHhH
Confidence            233332  11112222222    2    257899999999999999876421 1211      11223345666666677


Q ss_pred             Hhhh---hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          238 SEAY---ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       238 ~~~Y---~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      .|.|   ..+|..+          +||++ .++++++++|.+.+++
T Consensus       157 ~~~~~~~~~~~~~~----------~id~~-~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          157 KLVIDHYNKFDKVK----------IIPAN-RDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHHHHTTCEE----------EEECS-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEE----------EEECC-CCHHHHHHHHHHHHHH
Confidence            7644   4466322          15777 7999999999998875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.59  E-value=8.6e-15  Score=130.66  Aligned_cols=172  Identities=20%  Similarity=0.223  Sum_probs=98.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCCCchhhh------hhh----------------hc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGGTSVAQI------FKE----------------SG  146 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G~~i~~~------~~~----------------~g  146 (287)
                      ...|+|+||+||||||+++.|++.+++.|+|+|.++...     ..|.++.+.      ...                .|
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g   88 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG   88 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence            458999999999999999999999999999999986442     235554432      000                00


Q ss_pred             ---------------------hhhhhhhHHHHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHH
Q 023118          147 ---------------------EAYFREYESKALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARR  203 (287)
Q Consensus       147 ---------------------~~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~R  203 (287)
                                           .+..|..-.+..++++.....+|..|.  |++..|.+      .+.|||++|++.+++|
T Consensus        89 ~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pda------~lkifl~A~~e~Ra~R  162 (233)
T 3r20_A           89 EDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPDA------DVKIFLTASAEERARR  162 (233)
T ss_dssp             EECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTTC------SEEEEEECCHHHHHHH
T ss_pred             eehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCCC------CEEEEEECCHHHHHHH
Confidence                                 112222333344455544133444553  44433332      5899999999999999


Q ss_pred             HhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          204 IAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       204 i~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      ....      +.....+..++++..++.+.-..+...|. +.+.     -+++..+|||++++++++++.|++.++..+.
T Consensus       163 r~~~------l~~~~~~~~~~~~~~~i~~rD~~d~~r~~-~pl~-----~~~dal~IDTs~l~iee~v~~I~~~i~~~~~  230 (233)
T 3r20_A          163 RNAQ------NVANGLPDDYATVLADVQRRDHLDSTRPV-SPLR-----AADDALVVDTSDMDQAQVIAHLLDLVTAQAG  230 (233)
T ss_dssp             HHHH------HHHTTCCCCHHHHHHHHHHHHHHHHHSCS-SCCS-----CCTTSEEEECTTSCHHHHHHHHHHHC-----
T ss_pred             HHHH------HHhccCCCCHHHHHHHHHHHHHhhhhccc-cccc-----cccCcEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence            7641      11101112343333333333222222332 1111     1222234899999999999999999886654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.59  E-value=2e-15  Score=126.88  Aligned_cols=156  Identities=16%  Similarity=0.182  Sum_probs=92.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccc-cchhHHHHHhCCCchhhhhhhhchhhhhhhH------HHHHHHhhcC-C
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA-DSDKYVEKLMGGTSVAQIFKESGEAYFREYE------SKALQKLSLV-P  165 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi-d~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e------~~~l~~l~~~-~  165 (287)
                      +..|+|+|++||||||+++.|+..++.+|+ |.+.+      |..+.+++. .|...|+..+      .+.++.+... .
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~------g~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~g   77 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM------GQALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREAA   77 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH------HHHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh------HHHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhCC
Confidence            678999999999999999999999999998 64321      333444443 3444444322      2333333221 2


Q ss_pred             CeEEecCCceE--eccccHHhhc-CCcE---EEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh
Q 023118          166 QQVVATGGGAV--VRPLNWRFMR-QGIT---VFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE  239 (287)
Q Consensus       166 ~~via~ggG~v--~~~~~~~~L~-~g~~---I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~  239 (287)
                      ..|+..+.-.-  .....+..++ .|..   |||++|++.+.+|+..++  .||+ .          .+.+.++++.+.+
T Consensus        78 ~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~--~r~~-~----------~~~~~~~~~~~~~  144 (183)
T 2vli_A           78 GPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG--QPQV-N----------VGTVEDRLNELRG  144 (183)
T ss_dssp             SCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC------C-C----------HHHHHHHHHHHTS
T ss_pred             CcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc--ccch-h----------HHHHHHHHHhhcc
Confidence            22332211000  1112333444 3554   999999999999998764  3552 1          1346667777776


Q ss_pred             hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          240 AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       240 ~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      . ..++ +            ||+++.++++++++|++.+...+.
T Consensus       145 ~-~~~~-~------------Id~~~~~~~~~~~~I~~~l~~~~~  174 (183)
T 2vli_A          145 E-QFQT-H------------IDTAGLGTQQVAEQIAAQVGLTLA  174 (183)
T ss_dssp             G-GGCS-E------------EECTTCCHHHHHHHHHHHHTCCCC
T ss_pred             c-ccce-E------------eeCCCCCHHHHHHHHHHHHHHhcC
Confidence            6 3233 3            689889999999999999977654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.59  E-value=5.4e-15  Score=129.54  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=75.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHH-HHhhc--CC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKAL-QKLSL--VP  165 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l-~~l~~--~~  165 (287)
                      +..|+|+|++||||||+++.|+..++..++|.|.++.... +    |..+.+++. .|...++......+ ..+..  ..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~l~~~~~~   85 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID-QGKLIPDDVMTRLALHELKNLTQY   85 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhcccCC
Confidence            6789999999999999999999999999999999887654 2    333445543 25445554444433 33332  23


Q ss_pred             CeEEecCCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhc
Q 023118          166 QQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       166 ~~via~ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      ..|+..+++++.....+..+. .+.+|||++|++.+.+|+..+
T Consensus        86 ~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R  128 (227)
T 1zd8_A           86 SWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTAR  128 (227)
T ss_dssp             CEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCE
T ss_pred             CEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcC
Confidence            334444344433322233333 378999999999999999765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.59  E-value=1.1e-14  Score=124.92  Aligned_cols=168  Identities=14%  Similarity=0.164  Sum_probs=102.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhh----hhhhhchhhhhhhHHHHHHHhhcCCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQ----IFKESGEAYFREYESKALQKLSLVPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~----~~~~~g~~~fr~~e~~~l~~l~~~~~~  167 (287)
                      ...|+|+|++||||||+++.|+..++..++|.|.++.+..  .|..+.+    ++. .|...++......+.+....   
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~---   90 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISD---   90 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHH---
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHh---
Confidence            5689999999999999999999999999999999887653  3544333    322 34444443333333332110   


Q ss_pred             EEecC-CceEec--cccHH-------hhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          168 VVATG-GGAVVR--PLNWR-------FMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       168 via~g-gG~v~~--~~~~~-------~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                      .+..| .+.+++  +.++.       .+. .+.+|||++|++++.+|+..|+. .++...    +..+....++...++.
T Consensus        91 ~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~-~~~~~~----~~~e~~~~r~~~~~~~  165 (203)
T 1ukz_A           91 NVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK-TSGRSD----DNIESIKKRFNTFKET  165 (203)
T ss_dssp             HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH-HHCCTT----CSHHHHHHHHHHHHHT
T ss_pred             hhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccc-cCCCCC----CCHHHHHHHHHHHHHh
Confidence            11122 122221  22221       222 26899999999999999987631 122211    1222223445555666


Q ss_pred             HHhhh---hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          237 RSEAY---ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       237 R~~~Y---~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      +.|.|   ..++..+          +||++ .++++++++|.+.+++.
T Consensus       166 ~~~~~~~~~~~~~vi----------~id~~-~~~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          166 SMPVIEYFETKSKVV----------RVRCD-RSVEDVYKDVQDAIRDS  202 (203)
T ss_dssp             THHHHHHHHTTTCEE----------EEECS-SCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcCcEE----------EEECC-CCHHHHHHHHHHHHhcc
Confidence            66664   4456543          25777 69999999999988764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.58  E-value=4.9e-15  Score=125.05  Aligned_cols=166  Identities=14%  Similarity=0.144  Sum_probs=102.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCC----chhhhhhhhchhhhhhhHHHHHHHh-----h
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGT----SVAQIFKESGEAYFREYESKALQKL-----S  162 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~----~i~~~~~~~g~~~fr~~e~~~l~~l-----~  162 (287)
                      +..|+|+|++||||||+++.|+..++..++|.|.++....  .+.    .+.+++. .|...++......+.+.     .
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhhc
Confidence            6789999999999999999999999999999999986654  122    2333332 34444443333322211     1


Q ss_pred             --cCCCeEEecCCceEeccccHH----hhc----CCcEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHH
Q 023118          163 --LVPQQVVATGGGAVVRPLNWR----FMR----QGITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALS  231 (287)
Q Consensus       163 --~~~~~via~ggG~v~~~~~~~----~L~----~g~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~  231 (287)
                        .....++..|  .+.....++    .+.    .+.+|||++|++.+.+|+..|+. ..||...   .+   ....++.
T Consensus        82 ~~~~~~~vi~dg--~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~---~~---~~~~~~~  153 (196)
T 1tev_A           82 ANAQKNKFLIDG--FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDN---RE---SLEKRIQ  153 (196)
T ss_dssp             HCTTCCEEEEES--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCC---HH---HHHHHHH
T ss_pred             cccCCCeEEEeC--CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCC---HH---HHHHHHH
Confidence              1122333322  222222211    111    14689999999999999987642 1243221   11   1224455


Q ss_pred             HHHHHHHh---hhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          232 ALSKERSE---AYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       232 ~l~~~R~~---~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      ..+..+.|   .|.. +++.+           ||++ .++++++++|.+.+.+
T Consensus       154 ~~~~~~~~~~~~y~~~~~~~~-----------id~~-~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          154 TYLQSTKPIIDLYEEMGKVKK-----------IDAS-KSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEE-----------EETT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHhcCCEEE-----------EECC-CCHHHHHHHHHHHHHh
Confidence            55666666   5765 56544           6887 7999999999998865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.56  E-value=1.7e-14  Score=125.31  Aligned_cols=158  Identities=19%  Similarity=0.236  Sum_probs=97.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhhhh---hHHHH-----------
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFRE---YESKA-----------  157 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~fr~---~e~~~-----------  157 (287)
                      +..|+|+|++||||||+++.|++ ++++|+|+|.++.+..  ++..+.+++...|+..|+.   .+...           
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~   82 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEE   82 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHH
Confidence            56899999999999999999999 8999999999986643  2334455555555544431   11100           


Q ss_pred             ---HHH-------------hhc-CCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCc
Q 023118          158 ---LQK-------------LSL-VPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSA  220 (287)
Q Consensus       158 ---l~~-------------l~~-~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~  220 (287)
                         +..             +.. ....++..+.  .....+|.. ..+.+|||++|++.+.+|+..|.     ...    
T Consensus        83 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~--~l~~~~~~~-~~d~vi~l~~~~e~~~~Rl~~R~-----~~~----  150 (218)
T 1vht_A           83 KNWLNALLHPLIQQETQHQIQQATSPYVLWVVP--LLVENSLYK-KANRVLVVDVSPETQLKRTMQRD-----DVT----  150 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECT--TTTTTTGGG-GCSEEEEEECCHHHHHHHHHHHH-----TCC----
T ss_pred             HHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEee--eeeccCccc-cCCEEEEEECCHHHHHHHHHHcC-----CCC----
Confidence               111             111 1111111110  011112211 13689999999999999997642     111    


Q ss_pred             chhhHHHHHHHHHHHHHHhhhh---hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          221 DSYTKAFTALSALSKERSEAYA---NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       221 ~~~~~~~~~l~~l~~~R~~~Y~---~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                            .+.+.+.+..|.+.|.   .||++            ||++. ++++++++|.+.++.++.
T Consensus       151 ------~~~~~~~~~~~~~~~~~~~~ad~v------------Id~~~-~~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          151 ------REHVEQILAAQATREARLAVADDV------------IDNNG-APDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             ------HHHHHHHHHHSCCHHHHHHHCSEE------------EECSS-CTTSHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHhcCChHHHHHhCCEE------------EECCC-CHHHHHHHHHHHHHHHHH
Confidence                  1345556666655543   37765            47877 999999999999887654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.56  E-value=1.7e-14  Score=123.82  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC--CCchhhhhhhhchhhhh---hhHHHHHHHhh-------
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG--GTSVAQIFKESGEAYFR---EYESKALQKLS-------  162 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~--G~~i~~~~~~~g~~~fr---~~e~~~l~~l~-------  162 (287)
                      .+|+|+|++||||||+++.|++ +++.++|+|.++.+...  +..+.+++...|+..|+   ..+...+..+.       
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            3699999999999999999999 89999999999866442  33444555555555443   11221111110       


Q ss_pred             ---------------------cCC-CeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCc
Q 023118          163 ---------------------LVP-QQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSA  220 (287)
Q Consensus       163 ---------------------~~~-~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~  220 (287)
                                           ... ..++..|..  ..+.++..+ .+.+|||++|++++.+|+..|+     +    +.
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~--l~~~~~~~~-~~~~i~l~~~~e~~~~Rl~~R~-----~----~~  148 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASL--LVEKGTYKN-YDKLIVVYAPYEVCKERAIKRG-----M----SE  148 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSC--STTTTCGGG-SSEEEEECCCHHHHHHHHHHTC-----C----CH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccc--cccCCchhh-CCEEEEEECCHHHHHHHHHHcC-----C----CH
Confidence                                 011 223333221  122222222 2689999999999999998641     1    10


Q ss_pred             chhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          221 DSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       221 ~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                             +.+.+.+..+.+   .+..+|++            ||++ .++++++++|.+.+++...
T Consensus       149 -------~~~~~~~~~~~~~~~~~~~ad~v------------Id~~-~~~~~~~~~i~~~l~~~~~  194 (204)
T 2if2_A          149 -------EDFERRWKKQMPIEEKVKYADYV------------IDNS-GSIEETYKQVKKVYEELTR  194 (204)
T ss_dssp             -------HHHHHHHTTSCCHHHHGGGCSEE------------CCCS-SCHHHHHHHHHHHHHTTCC
T ss_pred             -------HHHHHHHHhCCChhHHHhcCCEE------------EECC-CCHHHHHHHHHHHHHHHhc
Confidence                   223444444443   23347754            5777 6999999999999887654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.52  E-value=5.2e-14  Score=126.47  Aligned_cols=154  Identities=18%  Similarity=0.187  Sum_probs=101.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc---cCCccc--cchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA---LDYTFA--DSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~---l~~~fi--d~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      +..|+|+|++||||||+++.|+..   +++.++  |+|.+.+... |      |...++..++..+...++..... ..+
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~-~------~~~~~e~~~~~~~~~~i~~~l~~-~~v   75 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP-V------WKEKYEEFIKKSTYRLIDSALKN-YWV   75 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS-S------CCGGGHHHHHHHHHHHHHHHHTT-SEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh-h------hhHHHHHHHHHHHHHHHHHHhhC-CEE
Confidence            678999999999999999999997   788888  9988763332 3      34456777777666666655444 455


Q ss_pred             EecCCceEeccccHHhhc--------CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhh
Q 023118          169 VATGGGAVVRPLNWRFMR--------QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEA  240 (287)
Q Consensus       169 ia~ggG~v~~~~~~~~L~--------~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~  240 (287)
                      |..+.  ......+..+.        ...+|||++|++++.+|+..|+   ++.    +.    +.++.+.+.|+++.+.
T Consensus        76 IiD~~--~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~---~~~----~~----~~l~~~~~~~e~~~~~  142 (260)
T 3a4m_A           76 IVDDT--NYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG---EKI----PN----EVIKKMYEKFDEPGKK  142 (260)
T ss_dssp             EECSC--CCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT---CSS----CH----HHHHHHHHHCCCTTSS
T ss_pred             EEeCC--cccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC---CCC----CH----HHHHHHHHHhcCcccc
Confidence            55442  22333333332        1478999999999999998754   221    11    1223333444444455


Q ss_pred             hh--hCCeEEeccccccccccccCCC-CCHHHHHHHHHHHHHH
Q 023118          241 YA--NADATVSLLNLAACIGLKDVLD-ITPTTIAMEVLVQAQK  280 (287)
Q Consensus       241 Y~--~ad~~v~~~~~a~~~~~idt~~-~t~~eva~~i~~~i~~  280 (287)
                      |.  .++++            ||++. ++++++++.|.+.+..
T Consensus       143 ~~~~~~~~~------------Id~~~~~~~~ei~~~I~~~l~~  173 (260)
T 3a4m_A          143 YKWDEPFLI------------IDTTKDIDFNEIAKKLIEKSKE  173 (260)
T ss_dssp             CGGGCCSEE------------EETTSCCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEE------------EeCCCCCCHHHHHHHHHhcccC
Confidence            54  35555            47776 7999999999887653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.50  E-value=2.1e-13  Score=114.80  Aligned_cols=160  Identities=14%  Similarity=0.118  Sum_probs=95.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhh--H--HHH-------H
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREY--E--SKA-------L  158 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~--e--~~~-------l  158 (287)
                      ..|+|+|++||||||+++.|+..++     ..++++|+++.+.....    .+. .+.+.|+..  +  ..+       +
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKL----GYA-KDRDEMRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTT----TSC-SSHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhc----ccc-cchhhhhcCCHHHHHHHHHHHHHHH
Confidence            3799999999999999999999987     78888888775443100    000 111212111  1  111       1


Q ss_pred             HHhh--cCCCeEEecCCceEecccc------HHhh---cCCcEEEEecCHHHHHHH-Hhh--cCCCCC-CCcCCCCcchh
Q 023118          159 QKLS--LVPQQVVATGGGAVVRPLN------WRFM---RQGITVFLNVPLDALARR-IAA--VGTDSF-PLLDYDSADSY  223 (287)
Q Consensus       159 ~~l~--~~~~~via~ggG~v~~~~~------~~~L---~~g~~I~L~~~~e~l~~R-i~~--~~~~~R-Pll~~~~~~~~  223 (287)
                      ....  .....||..|.+.+.....      ...+   ....+|||++|++.+.+| +..  |+   + |....   +..
T Consensus        77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~---~~~~~~~---~~~  150 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRN---RNDYSDE---SVI  150 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTC---CCCCCSH---HHH
T ss_pred             HHHhhccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccC---CCCccCH---HHH
Confidence            2222  3345677777644333211      2222   247899999999998866 665  43   3 32221   111


Q ss_pred             hHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccc-cCCCCCHHHHHHHHHHHH
Q 023118          224 TKAFTALSALSKERSEAYANADATVSLLNLAACIGLK-DVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       224 ~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~i-dt~~~t~~eva~~i~~~i  278 (287)
                       +....+.+.|.++.+.|..+++.+           | |++ .++++++++|.+.+
T Consensus       151 -~~~~~~~~~~~~~~~~~~~~~~~~-----------I~d~~-~~~e~v~~~I~~~l  193 (194)
T 1nks_A          151 -LETINFARYAATASAVLAGSTVKV-----------IVNVE-GDPSIAANEIIRSM  193 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTCEEEE-----------EECCS-SCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhcCCcEEE-----------EeCCC-CCHHHHHHHHHHHh
Confidence             123456677777777775444443           6 554 69999999998765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.50  E-value=4.6e-14  Score=120.25  Aligned_cols=156  Identities=17%  Similarity=0.170  Sum_probs=90.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhh--hhHHH--------------H
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFR--EYESK--------------A  157 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr--~~e~~--------------~  157 (287)
                      ...|+|+|++||||||+++.|+.. ++.|+|+|.++.+...|.+ .+++... +..|+  ..+..              .
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~-~~i~~~~-~~~~~~g~i~~~~l~~~~~~~~~~~~~   84 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKE-EELKRLF-PEAVVGGRLDRRALARLVFSDPERLKA   84 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTH-HHHHHHC-GGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChH-HHHHHHH-HHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence            468999999999999999999998 9999999998765432322 2222211 12211  00111              0


Q ss_pred             H-------------HHhhcC-CCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchh
Q 023118          158 L-------------QKLSLV-PQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSY  223 (287)
Q Consensus       158 l-------------~~l~~~-~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~  223 (287)
                      +             ...... ...|+..+.  .....++... .+.+|||++|++.+.+|+..|     |...   .   
T Consensus        85 l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~--~l~~~~~~~~-~d~~i~l~~~~e~~~~R~~~R-----~~~~---~---  150 (203)
T 1uf9_A           85 LEAVVHPEVRRLLMEELSRLEAPLVFLEIP--LLFEKGWEGR-LHGTLLVAAPLEERVRRVMAR-----SGLS---R---  150 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCSEEEEECT--TTTTTTCGGG-SSEEEEECCCHHHHHHHHHTT-----TCCT---T---
T ss_pred             HHHHhChHHHHHHHHHhhhcCCCEEEEEec--ceeccCchhh-CCEEEEEECCHHHHHHHHHHc-----CCCC---H---
Confidence            1             111111 122322221  1111112111 268999999999999999753     2111   0   


Q ss_pred             hHHHHHHHHHHHHHHhhh---hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          224 TKAFTALSALSKERSEAY---ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       224 ~~~~~~l~~l~~~R~~~Y---~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                          +.+.+.+..+.+.|   ..+|++            ||++. ++++++++|.+.+..++.
T Consensus       151 ----~~~~~~i~~~~~~~~~~~~ad~v------------Id~~~-~~~~~~~~i~~~~~~~~~  196 (203)
T 1uf9_A          151 ----EEVLARERAQMPEEEKRKRATWV------------LENTG-SLEDLERALKAVLAELTG  196 (203)
T ss_dssp             ----HHHHHHHTTSCCHHHHHHHCSEE------------ECCSS-HHHHHHHHHHHHHHSCCC
T ss_pred             ----HHHHHHHHHCCChhHHHHhCCEE------------EECCC-CHHHHHHHHHHHHHHHHh
Confidence                12333333343333   347764            47777 999999999998876554

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.49  E-value=1.4e-13  Score=117.01  Aligned_cols=75  Identities=13%  Similarity=0.033  Sum_probs=55.1

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh-h-CCeEEeccccccccccccCCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA-N-ADATVSLLNLAACIGLKDVLDI  265 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~-~-ad~~v~~~~~a~~~~~idt~~~  265 (287)
                      +.+|||++|++++.+|+..++   ||+....+ .   +..+.+.+.|..+.+.|. . ++++            ||++. 
T Consensus       126 d~vi~L~~~~e~~~~Rl~~R~---r~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~~~~~------------Id~~~-  185 (205)
T 2jaq_A          126 DIVIYLRVSTKTAISRIKKRG---RSEELLIG-E---EYWETLNKNYEEFYKQNVYDFPFFV------------VDAEL-  185 (205)
T ss_dssp             SEEEEEECCHHHHHHHHHHHT---CHHHHHSC-H---HHHHHHHHHHHHHHHHHTTTSCEEE------------EETTS-
T ss_pred             CEEEEEeCCHHHHHHHHHHcC---ChhhhcCc-H---HHHHHHHHHHHHHHHHccccCcEEE------------EECCC-
Confidence            689999999999999998763   66543111 1   224567788888888885 3 5555            47776 


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 023118          266 TPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       266 t~~eva~~i~~~i~~~l  282 (287)
                      ++++++.+|.+.+.++.
T Consensus       186 ~~~~v~~~I~~~l~~~~  202 (205)
T 2jaq_A          186 DVKTQIELIMNKLNSIK  202 (205)
T ss_dssp             CHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999987644

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.47  E-value=2.3e-14  Score=130.06  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             CCccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           62 NAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        62 ~~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      |.++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++..
T Consensus         8 ~~~~l~~~~l~~~~~~~~vL~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~---~~g~~~~~   77 (266)
T 4g1u_C            8 PVALLEASHLHYHVQQQALINDVSLHIAS---GEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECH---LLGQNLNS   77 (266)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEE---ETTEETTT
T ss_pred             CcceEEEEeEEEEeCCeeEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEE---ECCEECCc
Confidence            34579999999999999999999999999   999999999999999999999999998   677665   46766543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.46  E-value=1.6e-14  Score=125.38  Aligned_cols=159  Identities=14%  Similarity=0.120  Sum_probs=95.4

Q ss_pred             eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC------CccccchhHHHHHhCCCchhh-hhhhhchhhhhhhHHHHH
Q 023118           86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALD------YTFADSDKYVEKLMGGTSVAQ-IFKESGEAYFREYESKAL  158 (287)
Q Consensus        86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~------~~fid~d~~ie~~~~G~~i~~-~~~~~g~~~fr~~e~~~l  158 (287)
                      +.+.+   |..|+|+|++||||||+++.|++.++      ..++|+|.+..    +.+... ++...+...++.... .+
T Consensus        20 ~~~~~---~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~----~l~~~~~~~~~~r~~~~~~~~~-~~   91 (211)
T 1m7g_A           20 LRNQR---GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF----GLNKDLGFSEADRNENIRRIAE-VA   91 (211)
T ss_dssp             HHTSS---CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT----TTTTTCCSSHHHHHHHHHHHHH-HH
T ss_pred             ccCCC---CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhh----hhccccCCCHHHHHHHHHHHHH-HH
Confidence            34556   89999999999999999999999887      67788777652    222111 222344455554432 23


Q ss_pred             HHhhcCCCeEEecCCceEeccccHHhhc-------C-------CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhh
Q 023118          159 QKLSLVPQQVVATGGGAVVRPLNWRFMR-------Q-------GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT  224 (287)
Q Consensus       159 ~~l~~~~~~via~ggG~v~~~~~~~~L~-------~-------g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~  224 (287)
                      .........||++.. ... ..+++.+.       .       ..+|||++|++++.+|+      .||++..       
T Consensus        92 ~~~l~~g~~VI~d~~-~~~-~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~------~r~~~~~-------  156 (211)
T 1m7g_A           92 KLFADSNSIAITSFI-SPY-RKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD------PKGLYKK-------  156 (211)
T ss_dssp             HHHHHTTCEEEEECC-CCC-HHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC------TTCHHHH-------
T ss_pred             HHHHHCCCEEEEecC-Ccc-HHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh------hHHHHHH-------
Confidence            333333455666632 211 12233222       1       47899999999999995      2343210       


Q ss_pred             HHHHHHHHHHHHHHhhhhh---CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          225 KAFTALSALSKERSEAYAN---ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       225 ~~~~~l~~l~~~R~~~Y~~---ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                       ..+...++++.+.+.|+.   ++++            ||++.+++++++++|++.+..
T Consensus       157 -~r~~~~~~~~~~~~~y~~~~~~~~~------------IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          157 -AREGVIKEFTGISAPYEAPANPEVH------------VKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             -HHHTSSSSCBTTTBCCCCCSSCSEE------------EECSSSCHHHHHHHHHHHHHH
T ss_pred             -HHhcchhhhhhhhhhccCCCCCeEE------------EECCCCCHHHHHHHHHHHHHH
Confidence             001011112234455542   3433            689989999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.45  E-value=3e-14  Score=128.36  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=59.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~---~~g~~~   71 (257)
T 1g6h_A            6 EILRTENIVKYFGEFKALDGVSISVNK---GDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVY---FENKDI   71 (257)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred             cEEEEeeeEEEECCEeeEeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEEC
Confidence            479999999999998999999999999   999999999999999999999999998   677664   456554

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.45  E-value=2.8e-14  Score=126.04  Aligned_cols=67  Identities=24%  Similarity=0.272  Sum_probs=59.9

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++++|+++.|++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.
T Consensus         3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~~   69 (224)
T 2pcj_A            3 EILRAENIKKVIRGYEILKGISLSVKK---GEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVF---LEGKEVD   69 (224)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEE---ETTEECC
T ss_pred             cEEEEEeEEEEECCEeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE---ECCEECC
Confidence            369999999999988999999999999   999999999999999999999999998   677765   4676553

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.45  E-value=3.7e-14  Score=126.53  Aligned_cols=66  Identities=21%  Similarity=0.286  Sum_probs=59.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~   70 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAIHAIKGIDLKVPR---GQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKII---FNGQDI   70 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred             ceEEEEeEEEEECCeeEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEC
Confidence            479999999999988999999999999   999999999999999999999999988   677664   456554

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.44  E-value=4.4e-14  Score=127.76  Aligned_cols=66  Identities=17%  Similarity=0.272  Sum_probs=58.7

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~---~~g~~~   70 (262)
T 1b0u_A            5 NKLHVIDLHKRYGGHEVLKGVSLQARA---GDVISIIGSSGSGKSTFLRCINFLEKP---SEGAII---VNGQNI   70 (262)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEc
Confidence            369999999999988999999999999   999999999999999999999999998   566664   356544

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.42  E-value=6.9e-14  Score=126.23  Aligned_cols=61  Identities=26%  Similarity=0.272  Sum_probs=55.6

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus        13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~---Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~   73 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKKEILKGISFEIEE---GEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVT   73 (256)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE
T ss_pred             CCeEEEEEEEEEECCEEEEEeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE
Confidence            3579999999999989999999999999   999999999999999999999999988   566553

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.42  E-value=9.6e-14  Score=117.50  Aligned_cols=163  Identities=17%  Similarity=0.102  Sum_probs=94.7

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc--cccchhHHHHHhCCCchhhhhhhhchhhhhhhHH--HHHHHhhc
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT--FADSDKYVEKLMGGTSVAQIFKESGEAYFREYES--KALQKLSL  163 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~--fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~--~~l~~l~~  163 (287)
                      +.+   |++++|+|||||||||++++|++.++..  ++|+|.+..... ...+..++.+.+.....-.+.  ........
T Consensus         6 i~~---g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~   81 (191)
T 1zp6_A            6 DLG---GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQQNRMIMQIAADVAGRYAK   81 (191)
T ss_dssp             CCT---TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCC-SSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC---CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhh-cccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence            556   9999999999999999999999987655  788888763322 212222222222111000000  00111111


Q ss_pred             CCCeEEecCCceEeccccHHhhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh
Q 023118          164 VPQQVVATGGGAVVRPLNWRFMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE  239 (287)
Q Consensus       164 ~~~~via~ggG~v~~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~  239 (287)
                      ....++..+  . ........+.    ....+|+..+.+.+..|+..++   +|++.    ++     +.+.++++.+.+
T Consensus        82 ~~~~~~~~~--~-~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~---~~~ll----d~-----~~~~~~~~~~~~  146 (191)
T 1zp6_A           82 EGYFVILDG--V-VRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRG---GDSLS----DP-----LVVADLHSQFAD  146 (191)
T ss_dssp             TSCEEEECS--C-CCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTC---TTSCC----CH-----HHHHHHHHHTTC
T ss_pred             cCCeEEEec--c-CcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC---CCccC----CH-----HHHHHHHHHHhc
Confidence            111122111  0 1111222222    2357999999999999998653   34442    11     345667777888


Q ss_pred             hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          240 AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       240 ~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      +|..++.+            |||++.++++++++|++.+...
T Consensus       147 l~~~~~~~------------i~t~~~~~~~~~~~i~~~l~~~  176 (191)
T 1zp6_A          147 LGAFEHHV------------LPVSGKDTDQALQSAINALQSG  176 (191)
T ss_dssp             CGGGGGGE------------EECTTCCTTTTTTTTHHHHHHT
T ss_pred             cCcccccE------------EECCCCCHHHHHHHHHHHHHhh
Confidence            87655544            4788789999999999888653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.42  E-value=7.8e-14  Score=124.41  Aligned_cols=165  Identities=14%  Similarity=0.056  Sum_probs=92.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCc----------cccchhHHHHHhCCCchhhhhhhhchhhhhhhH-------HH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYT----------FADSDKYVEKLMGGTSVAQIFKESGEAYFREYE-------SK  156 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~----------fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e-------~~  156 (287)
                      ..+|+|+|++||||||+++.|+..++.+          ++++|.++.... ...+.  +...|.-.|...+       .+
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~-~~~~~--~~~~g~~~f~~~~~~d~~~l~~   98 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT-SEQKA--KALKGQFNFDHPDAFDNELILK   98 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC-HHHHH--HHHTTCSCTTSGGGBCHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC-hhhhh--hhccCCCCCCCcchhhHHHHHH
Confidence            3579999999999999999999999988          688998862110 00010  1112222222221       13


Q ss_pred             HHHHhhc------------------------CCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCC
Q 023118          157 ALQKLSL------------------------VPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSF  212 (287)
Q Consensus       157 ~l~~l~~------------------------~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~R  212 (287)
                      .+..+..                        ....+|..|......+.....  -+.+|||++|++.+.+|+..|....+
T Consensus        99 ~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~--~d~vi~l~~~~e~~~~R~~~R~~~~r  176 (252)
T 1uj2_A           99 TLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDL--FQMKLFVDTDADTRLSRRVLRDISER  176 (252)
T ss_dssp             HHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHH--CSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHh--cCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence            4554431                        122344444321111111111  26899999999999999976521001


Q ss_pred             CCcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          213 PLLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       213 Pll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      .       ...    +.+.+.+..|.         |.+..||+++.        ..||+ +.++++++++|.+.+...++
T Consensus       177 g-------~~~----e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~--------~~id~-~~s~e~v~~~I~~~l~~~~~  236 (252)
T 1uj2_A          177 G-------RDL----EQILSQYITFVKPAFEEFCLPTKKYADVIIP--------RGADN-LVAINLIVQHIQDILNGGPS  236 (252)
T ss_dssp             C-------CCH----HHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE--------TGGGC-HHHHHHHHHHHHHHHHC---
T ss_pred             C-------CCH----HHHHHHHHHhccHHHHHHhhhhhhcCcEEEe--------cCCCC-hhHHHHHHHHHHHHHccchh
Confidence            1       111    22223333222         44555888762        12577 67999999999999886654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.42  E-value=7.3e-14  Score=126.59  Aligned_cols=65  Identities=22%  Similarity=0.357  Sum_probs=58.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~---Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~---~~g~~i   88 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIRE---GEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEII---IDGINL   88 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEES
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEE---ECCEEC
Confidence            69999999999988999999999999   999999999999999999999999988   667664   456544

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.42  E-value=8.1e-14  Score=127.26  Aligned_cols=66  Identities=26%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus        20 ~~l~~~~l~~~y~~~~vL~~isl~i~~---Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~---~~g~~~   85 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGKTILKKISWQIAK---GDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVN---LFGKMP   85 (279)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTBCC
T ss_pred             ceEEEEeEEEEECCEEEEEeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEE---ECCEEc
Confidence            479999999999988999999999999   999999999999999999999999998   667664   456554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.41  E-value=9e-14  Score=132.27  Aligned_cols=65  Identities=17%  Similarity=0.272  Sum_probs=58.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +|+++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~---i~G~~~   67 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHE---GEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLF---IGEKRM   67 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEEC
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECC---CCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEE---ECCEEC
Confidence            58999999999999999999999999   999999999999999999999999998   677664   355544

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.41  E-value=6.1e-14  Score=124.85  Aligned_cols=67  Identities=16%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      +++++|++++|+.    ..+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++..
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~---~~g~~~~~   71 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKE---GEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVY---IDNIKTND   71 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEECTT
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEE---ECCEEccc
Confidence            4789999999963    4699999999999   999999999999999999999999999   677765   46766644

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.41  E-value=9e-14  Score=122.35  Aligned_cols=66  Identities=20%  Similarity=0.235  Sum_probs=58.4

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      .++|+++|+++.|++ .+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~---Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~---~~g~~~   73 (214)
T 1sgw_A            8 GSKLEIRDLSVGYDK-PVLERITMTIEK---GNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEII---YNGVPI   73 (214)
T ss_dssp             -CEEEEEEEEEESSS-EEEEEEEEEEET---TCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEG
T ss_pred             CceEEEEEEEEEeCC-eEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEE---ECCEEh
Confidence            357999999999998 999999999999   999999999999999999999999988   577665   456554

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.41  E-value=8.2e-14  Score=131.89  Aligned_cols=75  Identities=16%  Similarity=0.199  Sum_probs=57.6

Q ss_pred             CcCCCCCCCccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHH
Q 023118           55 AHVSKDSNAHDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVE  130 (287)
Q Consensus        55 ~~~~~~~~~~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie  130 (287)
                      .|...+.+.++|+++|+++.|+.    ..+|+++||++++   |++++|+||||||||||+++|+|++.|   ++|.+. 
T Consensus        14 ~~~~~~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~---Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~-   86 (366)
T 3tui_C           14 SGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPA---GQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVL-   86 (366)
T ss_dssp             ---------CCEEEEEEEEEEECSSSEEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE-
T ss_pred             CCCCCCCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcC---CCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEE-
Confidence            34444445568999999999953    5799999999999   999999999999999999999999998   667664 


Q ss_pred             HHhCCCch
Q 023118          131 KLMGGTSV  138 (287)
Q Consensus       131 ~~~~G~~i  138 (287)
                        ++|.++
T Consensus        87 --i~G~~i   92 (366)
T 3tui_C           87 --VDGQEL   92 (366)
T ss_dssp             --ETTEEC
T ss_pred             --ECCEEC
Confidence              345544

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.40  E-value=1.1e-13  Score=130.83  Aligned_cols=65  Identities=25%  Similarity=0.410  Sum_probs=58.8

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +|+++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~---i~G~~i   68 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDP---GEILFIIGASGCGKTTLLRCLAGFEQP---DSGEIS---LSGKTI   68 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEEE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEE---ECCEEC
Confidence            69999999999999999999999999   999999999999999999999999999   677664   456554

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.40  E-value=5.4e-13  Score=113.13  Aligned_cols=156  Identities=15%  Similarity=0.086  Sum_probs=86.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC-ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY-TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATG  172 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~-~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~g  172 (287)
                      |++++|+|||||||||+++.|++.++. .|+++|.+.+....|.-............++..+. .++........++..+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~ild~   80 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD-LTVNFLLAQNDVVLDY   80 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHH-HHHHHHHTTCEEEEES
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHH-HHHHHHhcCCcEEEee
Confidence            678999999999999999999997765 68898887632211211111101111222332222 2222222222344433


Q ss_pred             C-ceEeccccHHhhc------CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCC
Q 023118          173 G-GAVVRPLNWRFMR------QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANAD  245 (287)
Q Consensus       173 g-G~v~~~~~~~~L~------~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad  245 (287)
                      - +........++++      +..++||++|++++.+|+..+...  +.+     ++     ..+.+ ++.+.+.|+..+
T Consensus        81 ~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d--~~l-----d~-----~~~~~-~~~~~~~~~~~~  147 (189)
T 2bdt_A           81 IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD--EQM-----GE-----RCLEL-VEEFESKGIDER  147 (189)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----------CG-----GGGHH-HHHHHHTTCCTT
T ss_pred             ccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc--ccC-----CH-----HHHHH-HHHHhhcCCCcc
Confidence            1 1100011122322      134689999999999998754311  111     11     11234 566667765544


Q ss_pred             eEEeccccccccccccCCCC---CHHHHHHHHH
Q 023118          246 ATVSLLNLAACIGLKDVLDI---TPTTIAMEVL  275 (287)
Q Consensus       246 ~~v~~~~~a~~~~~idt~~~---t~~eva~~i~  275 (287)
                      .+            |+|++.   +++++++.|+
T Consensus       148 ~i------------i~tsh~~~~~~e~~~~~i~  168 (189)
T 2bdt_A          148 YF------------YNTSHLQPTNLNDIVKNLK  168 (189)
T ss_dssp             SE------------EECSSSCGGGHHHHHHHHH
T ss_pred             EE------------EeCCCCChhhHHHHHHHHh
Confidence            44            478888   8999999988

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.40  E-value=9.4e-14  Score=126.68  Aligned_cols=66  Identities=15%  Similarity=0.208  Sum_probs=57.8

Q ss_pred             ccEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           64 HDVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        64 ~~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++++++|++++|++ ..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~---Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~---~~G~~i   72 (275)
T 3gfo_A            6 YILKVEELNYNYSDGTHALKGINMNIKR---GEVTAILGGNGVGKSTLFQNFNGILKP---SSGRIL---FDNKPI   72 (275)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEET---TSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred             cEEEEEEEEEEECCCCeEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEE---ECCEEC
Confidence            47999999999974 5699999999999   999999999999999999999999998   567664   456554

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.40  E-value=1.6e-12  Score=112.48  Aligned_cols=147  Identities=14%  Similarity=0.143  Sum_probs=92.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhh---------------hhhHH-HH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYF---------------REYES-KA  157 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~f---------------r~~e~-~~  157 (287)
                      ...|+|+|++||||||+++.|+..+|++++|+|.++++.. +..+.+++...|++.|               +..+. ..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~-~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~   90 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVL-EEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKK   90 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH-HHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHH-HHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHH
Confidence            5689999999999999999999999999999999987766 4455555555565543               22221 11


Q ss_pred             HHH-------------hhcCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhh
Q 023118          158 LQK-------------LSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT  224 (287)
Q Consensus       158 l~~-------------l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~  224 (287)
                      +..             +......|+..+..  ..+..+..+ -+.+||+++|++++.+|+          ..        
T Consensus        91 l~~i~hP~i~~~~~~~~~~~~~~vv~d~pl--l~e~~~~~~-~d~vi~v~a~~e~r~~Rl----------i~--------  149 (192)
T 2grj_A           91 LELLVHPLMKKRVQEIINKTSGLIVIEAAL--LKRMGLDQL-CDHVITVVASRETILKRN----------RE--------  149 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEEECTT--TTTTTGGGG-CSEEEEEECCHHHHHHHC----------SS--------
T ss_pred             HHhhhCHHHHHHHHHHHHHcCCEEEEEEec--eeecChHHh-CCEEEEEECCHHHHHHHH----------HH--------
Confidence            111             11111223332221  112222211 268999999999999996          10        


Q ss_pred             HHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          225 KAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       225 ~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                         .++..+   .++.++.||++|            |++ .+++++..+|.+.++++
T Consensus       150 ---~q~~~~---~~~~~~~AD~vI------------~n~-~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          150 ---ADRRLK---FQEDIVPQGIVV------------ANN-STLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             ---HHHHHT---TCTTCCCCSEEE------------ECS-SCHHHHHHHHHHHHHHH
T ss_pred             ---hcCCch---hhhHHhcCCEEE------------ECC-CCHHHHHHHHHHHHHHH
Confidence               112111   123345588876            555 48999999998888765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.39  E-value=1.1e-13  Score=123.61  Aligned_cols=65  Identities=15%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.| ++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~   66 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQP---NSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEIT---IDGQPI   66 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECT---TEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEE---ETTEES
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEh
Confidence            47899999999 667899999999999   999999999999999999999999988   566664   355444

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.39  E-value=1.1e-13  Score=124.19  Aligned_cols=65  Identities=28%  Similarity=0.493  Sum_probs=56.2

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc--cCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA--LDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~--l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|++++|++..+|+++||++.+   |++++|+||||||||||+++|+|.  +.|   ++|.+.   ++|.++
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~---~~g~~~   69 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPK---GEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEIL---LDGENI   69 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEE---ETTEEC
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEE---ECCEEC
Confidence            68999999999988999999999999   999999999999999999999998  455   566554   345444

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.39  E-value=2.3e-12  Score=108.55  Aligned_cols=160  Identities=19%  Similarity=0.175  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc---CCccccchhHHHHHhCCCchhhhhhhhch------hhhhhhHH-H----HHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL---DYTFADSDKYVEKLMGGTSVAQIFKESGE------AYFREYES-K----ALQKL  161 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d~~ie~~~~G~~i~~~~~~~g~------~~fr~~e~-~----~l~~l  161 (287)
                      .|+|.|++||||||+++.|+..+   +++++++|....... |..+.+++.. |.      ..|...+. +    .+...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~-~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKV-GEVLREILLT-EELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHH-HHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCch-HHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999988   899999764210001 2222233221 21      01111111 1    12222


Q ss_pred             hcCCCeEEec----------CCceEeccccHH----hhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchh
Q 023118          162 SLVPQQVVAT----------GGGAVVRPLNWR----FMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSY  223 (287)
Q Consensus       162 ~~~~~~via~----------ggG~v~~~~~~~----~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~  223 (287)
                      ......|+..          |++.........    ++.    ...+|||++|++++.+|+..+     +...   ..  
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-----~~~~---~~--  149 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK-----NRFE---NK--  149 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT-----TCCC---CH--
T ss_pred             HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc-----Cccc---hH--
Confidence            2234455554          443333221111    122    368999999999999999742     2121   11  


Q ss_pred             hHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          224 TKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       224 ~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                       +..+++.+.|.+..+.| ...++            ||++ .++++++++|.+.+.+++
T Consensus       150 -~~~~~~~~~~~~~~~~~-~~~~~------------Id~~-~~~~~~~~~i~~~l~~~l  193 (195)
T 2pbr_A          150 -EFLEKVRKGFLELAKEE-ENVVV------------IDAS-GEEEEVFKEILRALSGVL  193 (195)
T ss_dssp             -HHHHHHHHHHHHHHHHS-TTEEE------------EETT-SCHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHHHHhhC-CCEEE------------EECC-CCHHHHHHHHHHHHHHHh
Confidence             12344444444444433 11133            5774 699999999999988765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.38  E-value=1.8e-13  Score=129.25  Aligned_cols=59  Identities=20%  Similarity=0.193  Sum_probs=55.1

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|++.|   ++|.+.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~   61 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKD---GEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIY   61 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcC---CCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEE
Confidence            58999999999998999999999999   999999999999999999999999998   667664

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.38  E-value=4.4e-13  Score=113.53  Aligned_cols=157  Identities=18%  Similarity=0.195  Sum_probs=87.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC-----ccccchhHHHHHhCCCchhhhhhhhc-hhhhhhhHHHHHHHhhcCCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY-----TFADSDKYVEKLMGGTSVAQIFKESG-EAYFREYESKALQKLSLVPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~-----~fid~d~~ie~~~~G~~i~~~~~~~g-~~~fr~~e~~~l~~l~~~~~~  167 (287)
                      |..|+|+|++||||||+++.|++.++.     .|+|+|.+.+...++.    .|.... ...++.. ....+.+.. .+.
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~r~~~~~~~-~~~~~~~~~-~g~   86 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGA----GFTREERLRHLKRI-AWIARLLAR-NGV   86 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTC----CCCHHHHHHHHHHH-HHHHHHHHT-TTC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhcc----CCChhhHHHHHHHH-HHHHHHHHh-CCC
Confidence            899999999999999999999998863     5678887642222111    011000 0111110 111222222 333


Q ss_pred             EEecCCceEe---ccccHHhhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhh
Q 023118          168 VVATGGGAVV---RPLNWRFMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEA  240 (287)
Q Consensus       168 via~ggG~v~---~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~  240 (287)
                      ++.+++....   .+..+..+.    ...+|||++|++++.+|+...      +......       ..+..++..|.+ 
T Consensus        87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~------~~~~~~~-------~~~~~~~~~~~~-  152 (186)
T 2yvu_A           87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKG------LYKKALK-------GELENFTGITDP-  152 (186)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHH------HHHHHHT-------TCCSSCHHHHSC-
T ss_pred             EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhh------hhhHHhh-------cchhhhhhhhhc-
Confidence            4444443221   122233333    257899999999999997421      1000000       001111223444 


Q ss_pred             hh---hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          241 YA---NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       241 Y~---~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                      |+   .++++            ||+++.++++++++|++.+...+
T Consensus       153 y~~~~~~~~~------------Id~~~~~~~ev~~~I~~~l~~~~  185 (186)
T 2yvu_A          153 YEPPENPQLV------------LDTESNTIEHNVSYLYSLVKAVI  185 (186)
T ss_dssp             CCCCSSCSEE------------EETTTSCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCcEE------------EECCCCCHHHHHHHHHHHHHHhc
Confidence            65   24544            58888899999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.38  E-value=6.1e-13  Score=111.99  Aligned_cols=152  Identities=18%  Similarity=0.149  Sum_probs=86.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc---CCccccch--hHHHHHhCCCchhhhh-hhhchhhhhhhHHHHHHHhhcCCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL---DYTFADSD--KYVEKLMGGTSVAQIF-KESGEAYFREYESKALQKLSLVPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d--~~ie~~~~G~~i~~~~-~~~g~~~fr~~e~~~l~~l~~~~~~  167 (287)
                      |..|+|+|++||||||+++.|++.+   ++++++.|  .+- .   +......+ ...++..|++.+. ....+.. ...
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~   78 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR-Q---GLNKNLGFSPEDREENVRRIAE-VAKLFAD-AGL   78 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-T---TTTTTCCSSHHHHHHHHHHHHH-HHHHHHH-TTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH-H---HHhhccccccccHHHHHHHHHH-HHHHHHH-CCC
Confidence            8999999999999999999999988   88887443  332 1   11111111 1344555655443 1111222 233


Q ss_pred             EEecCCce-Ee---ccccHHhhc-CC---cEEEEecCHHHHHHHHhhcC--CCCCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118          168 VVATGGGA-VV---RPLNWRFMR-QG---ITVFLNVPLDALARRIAAVG--TDSFPLLDYDSADSYTKAFTALSALSKER  237 (287)
Q Consensus       168 via~ggG~-v~---~~~~~~~L~-~g---~~I~L~~~~e~l~~Ri~~~~--~~~RPll~~~~~~~~~~~~~~l~~l~~~R  237 (287)
                      ++ ++++. +.   ...++.++. .+   .+|||++|++++.+|+..+.  ...+|.+...                ...
T Consensus        79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~----------------~~~  141 (179)
T 2pez_A           79 VC-ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF----------------TGI  141 (179)
T ss_dssp             EE-EEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC----------------BTT
T ss_pred             EE-EEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc----------------ccC
Confidence            33 33332 21   122223333 24   68999999999999975310  0012222110                001


Q ss_pred             Hhhhh---hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          238 SEAYA---NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       238 ~~~Y~---~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      .+.|+   .+|++            ||+++.++++++++|.+.+++
T Consensus       142 ~~~~~~~~~ad~v------------id~~~~~~~~~~~~i~~~l~~  175 (179)
T 2pez_A          142 DSEYEKPEAPELV------------LKTDSCDVNDCVQQVVELLQE  175 (179)
T ss_dssp             TBCCCCCSSCSEE------------EETTTSCHHHHHHHHHHHHHH
T ss_pred             CccccCCCCCcEE------------EECCCCCHHHHHHHHHHHHHH
Confidence            12232   25554            478888999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.38  E-value=7e-12  Score=110.61  Aligned_cols=166  Identities=18%  Similarity=0.231  Sum_probs=95.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCch----hhhhhhhchh----hhhhhHHHHHHHhhcC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSV----AQIFKESGEA----YFREYESKALQKLSLV  164 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i----~~~~~~~g~~----~fr~~e~~~l~~l~~~  164 (287)
                      ..+|+|+||+||||+|+++.|+..+++.+|++|+++.+... +..+    .++. ..|.-    ..-..-.+.+.+....
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~-~~G~lVpde~~~~lv~~~l~~~~~~  107 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMM-ERGELVPLEVVLALLKEAMIKLVDK  107 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHH-HHTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcccc
Confidence            67899999999999999999999999999999999877653 3222    2221 22221    1111111122222222


Q ss_pred             CCeEEecCCceEeccccH---Hhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          165 PQQVVATGGGAVVRPLNW---RFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       165 ~~~via~ggG~v~~~~~~---~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                      ...++-.|     .|.+.   ..|.     -..+|+|++|.+++.+|+..|..     ......|.-+....++..-.++
T Consensus       108 ~~g~ilDG-----fPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~-----~~~R~DD~~e~i~~Rl~~Y~~~  177 (217)
T 3umf_A          108 NCHFLIDG-----YPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE-----TSNRVDDNEETIVKRFRTFNEL  177 (217)
T ss_dssp             CSEEEEET-----BCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             ccCccccc-----CCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc-----cCCCCCCCHHHHHHHHHHHHHH
Confidence            33344443     12322   2221     26899999999999999976531     1111122221112233222222


Q ss_pred             HH---hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          237 RS---EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       237 R~---~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      -.   ..|++.+..+.          ||.+. ++++|.++|.+.++++
T Consensus       178 t~pl~~~Y~~~~~l~~----------Idg~~-~~eeV~~~I~~~l~k~  214 (217)
T 3umf_A          178 TKPVIEHYKQQNKVIT----------IDASG-TVDAIFDKVNHELQKF  214 (217)
T ss_dssp             THHHHHHHHTTTCEEE----------EETTS-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCEEE----------EECCC-CHHHHHHHHHHHHHHc
Confidence            22   35665443332          67764 9999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.38  E-value=4.5e-12  Score=109.86  Aligned_cols=110  Identities=14%  Similarity=0.144  Sum_probs=67.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhhhhhhHHHHHHHhhcCC---Ce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAYFREYESKALQKLSLVP---QQ  167 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~---~~  167 (287)
                      .|+|+|++||||||+++.|+..+++.++++|+++.+..     .|..+.+++.. |..........++.......   ..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~~~   80 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKERIAQEDCRNG   80 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccCCC
Confidence            58999999999999999999999999999999987742     24455555432 22111122222333221111   12


Q ss_pred             EEecCCceEeccccHHhhc-C----CcEEEEecCHHHHHHHHhhcC
Q 023118          168 VVATGGGAVVRPLNWRFMR-Q----GITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L~-~----g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      ++..|-  .........|. .    ..+|||++|++.+.+|+..|.
T Consensus        81 ~i~dg~--~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           81 FLLDGF--PRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             EEEESC--CCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             EEEeCC--CCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence            333331  11111122232 1    479999999999999998653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.38  E-value=1.9e-13  Score=122.54  Aligned_cols=66  Identities=20%  Similarity=0.317  Sum_probs=58.1

Q ss_pred             cEEEcceEEEc--CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~--~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      .++++|++++|  ++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~---i~g~~~~   74 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQ---GEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVL---IDGHDLA   74 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEETT
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEhh
Confidence            47899999999  467899999999999   999999999999999999999999998   577665   4676654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.38  E-value=1.7e-13  Score=124.20  Aligned_cols=67  Identities=21%  Similarity=0.310  Sum_probs=57.3

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCCchh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ++++++|+++.|++..+|+++||++.+   |++++|+||||||||||+++|+|.+  .|   ++|.+.   ++|.++.
T Consensus        19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~---~~g~~i~   87 (267)
T 2zu0_C           19 HMLSIKDLHVSVEDKAILRGLSLDVHP---GEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVE---FKGKDLL   87 (267)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEE---ETTEEGG
T ss_pred             ceEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEE---ECCEECC
Confidence            479999999999988999999999999   9999999999999999999999985  34   566654   4565553

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.37  E-value=2.2e-13  Score=123.75  Aligned_cols=67  Identities=22%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             ccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           64 HDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        64 ~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      .+++++||++.|++   ..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~---~~g~~i~   84 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYP---GKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVL---LDGEPLV   84 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEGG
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEE---ECCEEcc
Confidence            46999999999976   7899999999999   999999999999999999999999998   677664   4676653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.37  E-value=2.3e-13  Score=128.77  Aligned_cols=59  Identities=19%  Similarity=0.246  Sum_probs=54.9

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~   61 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKD---GEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIY   61 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECC---CCEEEEECCCCchHHHHHHHHhcCCCC---CceEEE
Confidence            58999999999988899999999999   999999999999999999999999998   566653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.37  E-value=9.4e-12  Score=107.43  Aligned_cols=107  Identities=15%  Similarity=0.234  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQKLSLVPQQVVA  170 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via  170 (287)
                      +|+|+|++||||||+++.|+..++..+++.|.++.+.. .|..    +.+++. .|...........+.+.....    .
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~----~   76 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMD-QGNLVPDEVTIGIVHERLSKD----D   76 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHTSG----G
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcc----c
Confidence            58999999999999999999999999999999987754 2322    222322 122111222222333222111    1


Q ss_pred             cCCceEec--cccH---Hhh----c-----CCcEEEEecCHHHHHHHHhhc
Q 023118          171 TGGGAVVR--PLNW---RFM----R-----QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       171 ~ggG~v~~--~~~~---~~L----~-----~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      ++.+.+++  +...   ..+    .     -..+|||++|++.+.+|+..|
T Consensus        77 ~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           77 CQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            13333333  2221   111    1     147899999999999999876

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.37  E-value=2.9e-13  Score=128.49  Aligned_cols=59  Identities=17%  Similarity=0.248  Sum_probs=55.1

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|++.|   ++|.+.
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~   69 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKD---GEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIY   69 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCC---CceEEE
Confidence            59999999999998999999999999   999999999999999999999999998   566653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.36  E-value=7.1e-12  Score=107.98  Aligned_cols=153  Identities=16%  Similarity=0.100  Sum_probs=86.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC-----------------------CccccchhHHHHHhCCCchhhhhhhhchhhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD-----------------------YTFADSDKYVEKLMGGTSVAQIFKESGEAYF  150 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~-----------------------~~fid~d~~ie~~~~G~~i~~~~~~~g~~~f  150 (287)
                      |..|+|+|||||||||+++.|+..++                       +.|++.+.+.+....|.-+ +.....|..+.
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   90 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFL-EFDKYANNFYG   90 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEE-EEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCE-EeHHhCCCeec
Confidence            89999999999999999999998773                       3345555554333333221 11111122111


Q ss_pred             hhhHHHHHHHhhcCCCeEEecCCceEeccccHHhh----c--CCcEEEEe-cCHHHHHHHHhhcCCCCCCCcCCCCcchh
Q 023118          151 REYESKALQKLSLVPQQVVATGGGAVVRPLNWRFM----R--QGITVFLN-VPLDALARRIAAVGTDSFPLLDYDSADSY  223 (287)
Q Consensus       151 r~~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L----~--~g~~I~L~-~~~e~l~~Ri~~~~~~~RPll~~~~~~~~  223 (287)
                      ..  .+.++.+......||..+.     +.....+    .  ..++|||+ +|++.+.+|+..|+.     .   +.   
T Consensus        91 ~~--~~~i~~~l~~g~~vi~d~~-----~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~-----~---~~---  152 (204)
T 2qor_A           91 TL--KSEYDLAVGEGKICLFEMN-----INGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT-----E---KP---  152 (204)
T ss_dssp             EE--HHHHHHHHHTTCEEEEECC-----HHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT-----S---CH---
T ss_pred             CC--HHHHHHHHHcCCeEEEEEC-----HHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC-----C---CH---
Confidence            11  1223333222223333211     1112222    2  34789999 999999999986541     0   11   


Q ss_pred             hHHHHHHH-HHHHHHHhh---hhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          224 TKAFTALS-ALSKERSEA---YAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       224 ~~~~~~l~-~l~~~R~~~---Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                          +.+. .+...|.++   |.. +|.+|            +++  ++++++++|.+.|...+.
T Consensus       153 ----~~i~~rl~~~~~~~~~~~~~~~d~vi------------~n~--~~e~~~~~i~~~i~~~~~  199 (204)
T 2qor_A          153 ----EEINKRMQELTREMDEADKVGFNYFI------------VND--DLARTYAELREYLLGSYP  199 (204)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHTCSEEE------------ECS--SHHHHHHHHHHHHHHHCT
T ss_pred             ----HHHHHHHHHHHHHHHHhhhccCcEEE------------ECc--CHHHHHHHHHHHHHHHhh
Confidence                1222 233344454   554 78765            333  899999999999987654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.36  E-value=5.7e-12  Score=110.37  Aligned_cols=107  Identities=17%  Similarity=0.254  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-C----CchhhhhhhhchhhhhhhHHHHHHHhhcC--CCeE
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-G----TSVAQIFKESGEAYFREYESKALQKLSLV--PQQV  168 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G----~~i~~~~~~~g~~~fr~~e~~~l~~l~~~--~~~v  168 (287)
                      .|+|+|++||||||+++.|+..++..++++|+++.+... |    ..+.+++. .|.-.++......+......  ...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~v   80 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDGW   80 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCeE
Confidence            689999999999999999999999999999999877632 2    22333332 34333344344444432221  2223


Q ss_pred             EecCCceEecccc---HHhh----c-----CCcEEEEecCHHHHHHHHhhcC
Q 023118          169 VATGGGAVVRPLN---WRFM----R-----QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       169 ia~ggG~v~~~~~---~~~L----~-----~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      +..|-     +.+   ...|    .     -..+|||++|++.+.+|+..|+
T Consensus        81 IlDg~-----~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           81 LLDGF-----PRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             EEESC-----CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             EEeCC-----cCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence            33321     222   1222    1     1479999999999999998774

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.36  E-value=2.9e-13  Score=128.45  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=55.0

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|++++|++..+|+++||++++   |++++|+||||||||||+++|+|++.|   ++|.+.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~   61 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKD---GEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIY   61 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEE
Confidence            58999999999998999999999999   999999999999999999999999998   566654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.36  E-value=2.2e-13  Score=128.51  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             CccEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           63 AHDVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        63 ~~~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +.+++++|++++| ++..+|+++||++++   |++++|+||||||||||+++|+|++.|   ++|.+.
T Consensus        12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~   73 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGARSVRGVSFQIRE---GEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVW   73 (355)
T ss_dssp             CEEEEEEEEEECCTTSTTCEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred             CceEEEEEEEEEEcCCCEEEeeeEEEECC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEE
Confidence            3579999999999 888899999999999   999999999999999999999999998   566653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.35  E-value=3.4e-13  Score=122.12  Aligned_cols=65  Identities=23%  Similarity=0.376  Sum_probs=56.8

Q ss_pred             cEEEcceEEEcC--C---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLD--G---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~--~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|+  +   +.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~---~~g~~~   71 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINE---GECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVL---YDGERK   71 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEE---ECCEEC
Confidence            589999999997  5   6799999999999   999999999999999999999999988   566664   355443

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.35  E-value=3.4e-13  Score=124.83  Aligned_cols=68  Identities=29%  Similarity=0.325  Sum_probs=59.5

Q ss_pred             ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ..++++||+++|+ +..+|+++||++++   |++++|+||||||||||+++|++.+.|   +.|.+.   ++|.++..
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~---Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~---i~G~~i~~  120 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMP---GQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIR---IDGQDISQ  120 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECT---TCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEE---ETTEETTS
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcC---CCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEE---ECCEEccc
Confidence            3599999999995 57899999999999   999999999999999999999999999   577664   46766644

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.35  E-value=3.1e-12  Score=113.50  Aligned_cols=44  Identities=18%  Similarity=0.007  Sum_probs=28.4

Q ss_pred             cCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           75 LDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        75 ~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      -++..+|+++||++.+   |.+|+|+||+|||||||+++|++.+|..
T Consensus         9 ~~~~~~l~~isl~i~~---g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A            9 SGVDLGTENLYFQSMR---PFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             --------------CC---SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCceeecceeccCCC---CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            3567799999999999   9999999999999999999999988765

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.35  E-value=1.2e-11  Score=112.63  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=92.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc-hhhhhhhhc----------------hhhhhhhH-
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS-VAQIFKESG----------------EAYFREYE-  154 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~-i~~~~~~~g----------------~~~fr~~e-  154 (287)
                      ...|+|+|++||||||+++.|+ .++++++|+|.+..+.. .|.. ...+....|                ...|...+ 
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~  153 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ  153 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence            4579999999999999999999 58999999999865433 1111 111111111                11122111 


Q ss_pred             ----------------HHHHHHhhc-CCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCC
Q 023118          155 ----------------SKALQKLSL-VPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDY  217 (287)
Q Consensus       155 ----------------~~~l~~l~~-~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~  217 (287)
                                      .+.+.++.. ....|+..|...  ....|..+ -+.+|||++|++++.+|+..|.+  ++    
T Consensus       154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l--~~~~~~~~-~d~vI~l~a~~ev~~~Rl~~R~g--~s----  224 (281)
T 2f6r_A          154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAML--LEAGWQSM-VHEVWTVVIPETEAVRRIVERDG--LS----  224 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTT--TTTTGGGG-CSEEEEEECCHHHHHHHHHHHHC--CC----
T ss_pred             HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechh--hccchHHh-CCEEEEEcCCHHHHHHHHHHcCC--CC----
Confidence                            112222211 234577776532  22233221 26899999999999999987631  11    


Q ss_pred             CCcchhhHHHHHHHHHHHHH---HhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          218 DSADSYTKAFTALSALSKER---SEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       218 ~~~~~~~~~~~~l~~l~~~R---~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                           .    +.+.+.+..+   ...+..||++|            |++. +++++..+|.+.+..+++
T Consensus       225 -----~----e~~~~ri~~q~~~~~~~~~AD~vI------------dn~~-s~eel~~~I~~~l~~l~~  271 (281)
T 2f6r_A          225 -----E----AAAQSRLQSQMSGQQLVEQSNVVL------------STLW-ESHVTQSQVEKAWNLLQK  271 (281)
T ss_dssp             -----H----HHHHHHHHTSCCHHHHHHTCSEEE------------ECSS-CHHHHHHHHHHHHHHHHH
T ss_pred             -----H----HHHHHHHHHcCChHhhHhhCCEEE------------ECCC-CHHHHHHHHHHHHHHHHH
Confidence                 1    1122222222   22334477664            6765 999999999999887654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.33  E-value=4.6e-13  Score=119.28  Aligned_cols=58  Identities=16%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             cEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+  +..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I   62 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPE---GALVAVVGQVGCGKSSLLSALLAEMDK---VEGHV   62 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEE
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceE
Confidence            589999999997  57899999999999   999999999999999999999999987   45554

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.33  E-value=6.6e-13  Score=119.48  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=54.0

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+++.|+ +..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I   62 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNK---GDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKI   62 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEET---TCEEEEECCSSSSHHHHHHHHTTSSCC---SEEEE
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence            699999999998 88899999999999   999999999999999999999999988   56654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.33  E-value=3.7e-13  Score=126.69  Aligned_cols=58  Identities=22%  Similarity=0.288  Sum_probs=53.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      |++++|++++|++. +|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus         1 ml~~~~l~~~y~~~-~l~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~   58 (348)
T 3d31_A            1 MIEIESLSRKWKNF-SLDNLSLKVES---GEYFVILGPTGAGKTLFLELIAGFHVP---DSGRIL   58 (348)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEEECT---TCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEE
T ss_pred             CEEEEEEEEEECCE-EEeeeEEEEcC---CCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEE
Confidence            47899999999988 99999999999   999999999999999999999999998   666654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.33  E-value=2.3e-13  Score=128.26  Aligned_cols=59  Identities=15%  Similarity=0.160  Sum_probs=54.7

Q ss_pred             cEEEcceEEEcCCee--eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           65 DVESGTFCDSLDGKW--LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~--il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++++|++++|++..  +|+++||++++   |++++|+||||||||||+++|+|++.|   ++|.+.
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~   63 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIEN---GERFGILGPSGAGKTTFMRIIAGLDVP---STGELY   63 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECT---TCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEE
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEE
Confidence            589999999998877  99999999999   999999999999999999999999988   666654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.32  E-value=2.4e-11  Score=105.01  Aligned_cols=106  Identities=20%  Similarity=0.265  Sum_probs=65.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHH-HhhcCCCeEE
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQ-KLSLVPQQVV  169 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~-~l~~~~~~vi  169 (287)
                      +|+|+|++||||||+++.|+..++..+++.|.++.+.. .+..    +.+++. .|...........+. .+...     
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~-----   75 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTIGIVKERLGKD-----   75 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHTSG-----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcc-----
Confidence            58999999999999999999999999999999887744 2322    223322 222111112222222 22221     


Q ss_pred             ecCCceEec--cccHH---hh----c-----CCcEEEEecCHHHHHHHHhhc
Q 023118          170 ATGGGAVVR--PLNWR---FM----R-----QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       170 a~ggG~v~~--~~~~~---~L----~-----~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      .++.+.+++  |....   .+    .     -..+|||++|++++.+|+..|
T Consensus        76 ~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           76 DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence            123344433  22221   11    1     147899999999999999876

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.32  E-value=8.1e-13  Score=117.04  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=53.5

Q ss_pred             ccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|+  +..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i   65 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKI   65 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEE
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcC---CccEE
Confidence            3699999999994  57899999999999   999999999999999999999999988   55554

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.31  E-value=2.2e-11  Score=108.32  Aligned_cols=169  Identities=18%  Similarity=0.226  Sum_probs=95.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCch----hhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSV----AQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i----~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      +.+|+|+||+||||||+++.|+..++..++++|.++.+.. .|..+    .+++.. |...-...-...+.......   
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~---  104 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLSLVDEKLKTP---  104 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTTSG---
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcc---
Confidence            6789999999999999999999999999999999987754 23222    222221 21111111112222221111   


Q ss_pred             EecCCceEec--cccH---Hh----hc-----CCcEEEEecCHHHHHHHHhhcCCC----------C-------------
Q 023118          169 VATGGGAVVR--PLNW---RF----MR-----QGITVFLNVPLDALARRIAAVGTD----------S-------------  211 (287)
Q Consensus       169 ia~ggG~v~~--~~~~---~~----L~-----~g~~I~L~~~~e~l~~Ri~~~~~~----------~-------------  211 (287)
                       .++.|.+++  +...   ..    +.     -..+|||++|++++.+|+..|..+          +             
T Consensus       105 -~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~  183 (243)
T 3tlx_A          105 -QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTN  183 (243)
T ss_dssp             -GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTC
T ss_pred             -cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCcccccc
Confidence             122233332  1221   11    11     257999999999999999976421          1             


Q ss_pred             CCCcCCCCcchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          212 FPLLDYDSADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       212 RPll~~~~~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      +|+.... .+..+....++....++-.|   .|...+..+.          ||.+ .++++|..+|.+.+.
T Consensus       184 ~~l~~r~-dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~----------id~~-~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          184 EPLIQRE-DDNEDVLKKRLTVFKSETSPLISYYKNKNLLIN----------LDAT-QPANDLEKKISQHID  242 (243)
T ss_dssp             CBCBCCG-GGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEE----------EETT-SCHHHHHHHHHHHHH
T ss_pred             ccccCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEE----------EECC-CCHHHHHHHHHHHHc
Confidence            2222221 12222223344443333333   4655554443          5655 499999999988775

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.31  E-value=6e-11  Score=104.86  Aligned_cols=180  Identities=18%  Similarity=0.131  Sum_probs=88.5

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC--ccccc--------hhHHHHHhC-CCchhhhhhhhchhh
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY--TFADS--------DKYVEKLMG-GTSVAQIFKESGEAY  149 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~--~fid~--------d~~ie~~~~-G~~i~~~~~~~g~~~  149 (287)
                      |.+.++.+...-.|..|+|.|++||||||+++.|++.++.  .++.+        +..+.+.+. |..+...    .+..
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~----~~~l   88 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIR----TEAM   88 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHH----HHHH
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHH----HHHH
Confidence            5556666552223999999999999999999999999863  33322        122222221 1100000    0000


Q ss_pred             -hhhhHHHH-----HHHhhcCCCeEEec----------CCceEeccccHHhh--------cCCcEEEEecCHHHHHHHHh
Q 023118          150 -FREYESKA-----LQKLSLVPQQVVAT----------GGGAVVRPLNWRFM--------RQGITVFLNVPLDALARRIA  205 (287)
Q Consensus       150 -fr~~e~~~-----l~~l~~~~~~via~----------ggG~v~~~~~~~~L--------~~g~~I~L~~~~e~l~~Ri~  205 (287)
                       |-....+.     ...+. ....|+..          |.+.-+.......+        ....+|||++|++.+.+|+.
T Consensus        89 l~~a~r~~~~~~~i~~~l~-~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~  167 (229)
T 4eaq_A           89 LFAASRREHLVLKVIPALK-EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII  167 (229)
T ss_dssp             HHHHHHHHHCCCCCHHHHH-TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHH
Confidence             00000000     11111 23345555          43322222211111        12579999999999999998


Q ss_pred             hcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          206 AVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       206 ~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      .|+..   .-..+  +...+.++++.+.|.+..+.|. ..+.+           ||++ .++++|+++|.+.+..++.
T Consensus       168 ~R~~~---~dr~e--~~~~~~~~rv~~~y~~l~~~~~-~~~~v-----------IDa~-~s~eev~~~I~~~l~~~l~  227 (229)
T 4eaq_A          168 KNSRD---QNRLD--QEDLKFHEKVIEGYQEIIHNES-QRFKS-----------VNAD-QPLENVVEDTYQTIIKYLE  227 (229)
T ss_dssp             HC--------CCC--HHHHHHHHHHHHHHHHHTTTCT-TTEEE-----------EETT-SCHHHHHHHHHHHHHHHHT
T ss_pred             hcCCC---ccchh--hhhHHHHHHHHHHHHHHHHhCC-CCEEE-----------EeCC-CCHHHHHHHHHHHHHHHhc
Confidence            86421   11111  0111123344444444433332 22333           6775 5999999999999998875

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.30  E-value=2.8e-11  Score=106.28  Aligned_cols=162  Identities=20%  Similarity=0.260  Sum_probs=101.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhhhh---hHHH------------
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFRE---YESK------------  156 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~fr~---~e~~------------  156 (287)
                      .--|+|+|..||||||++++|+. +|++++|+|.+..+.+  ++..+.+++...|+..|..   ....            
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~   87 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA   87 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence            34699999999999999999998 9999999999887655  4566777777777776631   1111            


Q ss_pred             ---------------HHHHhhcC-CCeEEecCCceEecc-ccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCC
Q 023118          157 ---------------ALQKLSLV-PQQVVATGGGAVVRP-LNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDS  219 (287)
Q Consensus       157 ---------------~l~~l~~~-~~~via~ggG~v~~~-~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~  219 (287)
                                     +.+.+... ...++....-  +.+ ..+..+ -..+||+++|++.+.+|+..|.+-         
T Consensus        88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pL--L~E~~~~~~~-~D~vi~V~ap~e~r~~Rl~~Rdg~---------  155 (210)
T 4i1u_A           88 RRRLEAITHPLIRAETEREARDAQGPYVIFVVPL--LVESRNWKAR-CDRVLVVDCPVDTQIARVMQRNGF---------  155 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTT--CTTCHHHHHH-CSEEEEEECCHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEec--ccccCCcccc-CCeEEEEECCHHHHHHHHHhcCCC---------
Confidence                           11111111 1122222221  112 222211 167999999999999999876311         


Q ss_pred             cchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          220 ADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       220 ~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                        +.+++..++...+ .+.+.++.||++|            |+++.+++++..+|.+.+++++.
T Consensus       156 --s~eea~~ri~~Q~-~~eek~~~AD~VI------------dN~~gsle~l~~qV~~l~~~~~~  204 (210)
T 4i1u_A          156 --TREQVEAIIARQA-TREARLAAADDVI------------VNDAATPDALAVQVDALHQRYLA  204 (210)
T ss_dssp             --CHHHHHHHHHHSC-CHHHHHHTCSEEE------------ECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHcC-ChHHHHHhCCEEE------------ECCCCCHHHHHHHHHHHHHHHHH
Confidence              1112222332221 2345556688876            56524899999999988887754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.30  E-value=4.3e-12  Score=108.20  Aligned_cols=164  Identities=12%  Similarity=0.057  Sum_probs=90.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhcc-CCccccchhHH-HHHhCCCchhhhhhhhc------hh-h---hhhhHHHHHHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYV-EKLMGGTSVAQIFKESG------EA-Y---FREYESKALQK  160 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l-~~~fid~d~~i-e~~~~G~~i~~~~~~~g------~~-~---fr~~e~~~l~~  160 (287)
                      +|..|+|+|++||||||+++.|+..+ ++++++.+... .... |..+.++|...+      .. .   .|..+.+.++.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~   81 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVT-GKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQE   81 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHH-HHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            38899999999999999999999998 57777654321 0111 223334432211      00 0   01111112222


Q ss_pred             hhcCCCeEEe-----------cCCceEeccccHHhh-----cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhh
Q 023118          161 LSLVPQQVVA-----------TGGGAVVRPLNWRFM-----RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT  224 (287)
Q Consensus       161 l~~~~~~via-----------~ggG~v~~~~~~~~L-----~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~  224 (287)
                      .......|+.           +|+|..  ......+     ..+.+|||++|++++.+   .|+. .+  .  + ..   
T Consensus        82 ~l~~~~~vi~Dr~~~s~~~~~~~~g~~--~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~-d~--~--e-~~---  147 (204)
T 2v54_A           82 QLEQGITLIVDRYAFSGVAYAAAKGAS--MTLSKSYESGLPKPDLVIFLESGSKEINR---NVGE-EI--Y--E-DV---  147 (204)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHHTTCC--HHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSS-ST--T--C-CS---
T ss_pred             HHHCCCEEEEECchhhHHHHHHccCCC--HHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCc-cc--c--c-HH---
Confidence            2223344553           233321  1111111     12689999999998877   2321 11  1  1 11   


Q ss_pred             HHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          225 KAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       225 ~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      +..+++...|.+..+.|. .+..+           ||++ .++++++++|.+.+.+.+..
T Consensus       148 ~~~~rl~~~y~~~~~~~~-~~~~~-----------Id~~-~~~~~v~~~i~~~l~~~l~~  194 (204)
T 2v54_A          148 TFQQKVLQEYKKMIEEGD-IHWQI-----------ISSE-FEEDVKKELIKNIVIEAIHT  194 (204)
T ss_dssp             HHHHHHHHHHHHHHTTCS-SCEEE-----------ECTT-SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CcEEE-----------EECC-CCHHHHHHHHHHHHHHHHhh
Confidence            223556666665555443 23333           5775 69999999999999887753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.29  E-value=3.5e-12  Score=128.21  Aligned_cols=158  Identities=19%  Similarity=0.143  Sum_probs=98.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc---CCccccchhHHHHHhCCCchhhhhh-hhchhhhhhhHHHHHHHhhcCCCeEE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL---DYTFADSDKYVEKLMGGTSVAQIFK-ESGEAYFREYESKALQKLSLVPQQVV  169 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d~~ie~~~~G~~i~~~~~-~~g~~~fr~~e~~~l~~l~~~~~~vi  169 (287)
                      |..|.|+|++||||||+++.|+..|   +++|++.|..+..  .+......|. ..++..||.. .++++.+..... ++
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR--~~L~~~~~fs~~dree~~r~i-~eva~~~l~~G~-iV  127 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR--QGLNKNLGFSPEDREENVRRI-AEVAKLFADAGL-VC  127 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT--TTTTTTCCSSHHHHHHHHHHH-HHHHHHHHHTTC-EE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh--hccCccccCChhhhHHHHHHH-HHHHHHHHhCCC-EE
Confidence            6789999999999999999999998   8888666432211  2443333344 4566777765 334444333333 33


Q ss_pred             ecCCceEe---ccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118          170 ATGGGAVV---RPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA  242 (287)
Q Consensus       170 a~ggG~v~---~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~  242 (287)
                      .++.+.+.   ++.++.++.. +   ++|||++|++++.+|+.      +|+...        +.......+..+++.|+
T Consensus       128 I~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~------r~ly~~--------aR~~~~~~~~~~~~~Ye  193 (630)
T 1x6v_B          128 ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV------KGLYKK--------ARAGEIKGFTGIDSEYE  193 (630)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT------TSHHHH--------HTTC----CBTTTBCCC
T ss_pred             EEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc------cccchh--------hhhhhHHHHHHhhhhhc
Confidence            34433332   2334444543 4   48999999999999964      232210        00000112345677786


Q ss_pred             ---hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          243 ---NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       243 ---~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                         .+|++            |||+++++++++++|++.+...
T Consensus       194 ~p~~~dlv------------IDts~~s~eevv~~Il~~L~~~  223 (630)
T 1x6v_B          194 KPEAPELV------------LKTDSCDVNDCVQQVVELLQER  223 (630)
T ss_dssp             CCSSCSEE------------EETTSSCHHHHHHHHHHHHHHT
T ss_pred             ccCCCcEE------------EECCCCCHHHHHHHHHHHHHhc
Confidence               25544            5899899999999999999753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.29  E-value=5.5e-11  Score=105.23  Aligned_cols=174  Identities=16%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCch----hhhhhhhchhhhhhhHHHHHH-Hhhc-CCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSV----AQIFKESGEAYFREYESKALQ-KLSL-VPQ  166 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i----~~~~~~~g~~~fr~~e~~~l~-~l~~-~~~  166 (287)
                      +++|+|+|||||||||++++|+..++..++++|.++.... .+..+    ..++. .+.........+.+. .+.. ...
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~v~~~l~~~l~~~~~~  105 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIE-KSLLVPDHVITRLMMSELENRRGQ  105 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCC
Confidence            6899999999999999999999777777779988864422 12112    12221 122111111222222 2221 111


Q ss_pred             eEEecCCceEeccccHHhh---cC-CcEEEEecCHHHHHHHHhhcCC-----------CC------------CCCcCCCC
Q 023118          167 QVVATGGGAVVRPLNWRFM---RQ-GITVFLNVPLDALARRIAAVGT-----------DS------------FPLLDYDS  219 (287)
Q Consensus       167 ~via~ggG~v~~~~~~~~L---~~-g~~I~L~~~~e~l~~Ri~~~~~-----------~~------------RPll~~~~  219 (287)
                      .++..|..  ........+   .. +.+|||++|++.+.+|+..+..           -.            .|+... +
T Consensus       106 ~~il~g~~--~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~l-d  182 (246)
T 2bbw_A          106 HWLLDGFP--RTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQ-E  182 (246)
T ss_dssp             CEEEESCC--CSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCC-G
T ss_pred             eEEEECCC--CCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccC-C
Confidence            22222211  011111122   22 7899999999999999875410           00            222211 1


Q ss_pred             cchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          220 ADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       220 ~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      .+......+.+.++.++..+   .|.+.+..+.          ||.+. + ++|..+|.+.+.+.+.
T Consensus       183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~----------id~~~-~-~~v~~~i~~~l~~~~~  237 (246)
T 2bbw_A          183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQ----------FSGTE-T-NKIWPYVYTLFSNKIT  237 (246)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE----------EECSC-H-HHHHHHHHHHHHTTSC
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEE----------ECCCC-c-HHHHHHHHHHHHhhCC
Confidence            11222223444444344444   5555544332          56653 4 9999999999887654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.29  E-value=4.7e-11  Score=102.60  Aligned_cols=169  Identities=13%  Similarity=0.089  Sum_probs=95.3

Q ss_pred             ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc-CCccccchhHHHHHhCCCchhh---hhhh------hchhhhhhhH
Q 023118           85 GREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYVEKLMGGTSVAQ---IFKE------SGEAYFREYE  154 (287)
Q Consensus        85 s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l-~~~fid~d~~ie~~~~G~~i~~---~~~~------~g~~~fr~~e  154 (287)
                      --.+.+   |..|+|+|++||||||+++.|++.+ +..+++.|.++.   .+..+..   -+..      .....+...-
T Consensus        15 ~~~~~~---~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i   88 (207)
T 2qt1_A           15 VPRGSK---TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK---PESEIETDKNGFLQYDVLEALNMEKMMSAI   88 (207)
T ss_dssp             CCCSCC---CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC---CGGGSCBCTTSCBCCSSGGGBCHHHHHHHH
T ss_pred             cccCCC---CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc---CHhHhhccccCCChhHHHHHhHHHHHHHHH
Confidence            345566   8999999999999999999999998 899999998862   2222110   0000      0001111110


Q ss_pred             HHHHHHhh-----------cCCCeEEecCCceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcch
Q 023118          155 SKALQKLS-----------LVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADS  222 (287)
Q Consensus       155 ~~~l~~l~-----------~~~~~via~ggG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~  222 (287)
                      ...+....           .....++.+|....  . ....... ..+|||++|++.+.+|+..|+   +.  .......
T Consensus        89 ~~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~--~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~---~~--~e~~~~~  160 (207)
T 2qt1_A           89 SCWMESARHSVVSTDQESAEEIPILIIEGFLLF--N-YKPLDTIWNRSYFLTIPYEECKRRRSTRV---YQ--PPDSPGY  160 (207)
T ss_dssp             HHHHHHHTTSSCCC-----CCCCEEEEECTTCT--T-CGGGTTTCSEEEEEECCHHHHHHHHHHSC---CS--SCCCTTH
T ss_pred             HHHHhCCCCCCcCCCeeecCCCCEEEEeehHHc--C-cHHHHHhcCeeEEEECCHHHHHHHHHHcC---CC--ccchHHH
Confidence            11122111           01234555553211  1 1112222 689999999999999987653   11  1100111


Q ss_pred             hhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          223 YTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       223 ~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      +.   ..+...|..+.+.|+. +|.++          +||++ .+++++.++|.+.+++.
T Consensus       161 ~~---~~~~~~~~~~~~~~~~~~~~v~----------~Id~~-~~~eev~~~I~~~l~~~  206 (207)
T 2qt1_A          161 FD---GHVWPMYLKYRQEMQDITWEVV----------YLDGT-KSEEDLFLQVYEDLIQE  206 (207)
T ss_dssp             HH---HTHHHHHHHHHHHGGGCSSCCE----------EEETT-SCHHHHHHHHHHHHTTT
T ss_pred             HH---HHHhHHHHHHHHHHHhcCCeEE----------EecCC-CCHHHHHHHHHHHHHhh
Confidence            11   1334455555566665 55443          25776 59999999999888654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.28  E-value=2e-12  Score=121.13  Aligned_cols=119  Identities=23%  Similarity=0.264  Sum_probs=90.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH--------------HHHHhCCC-----chhhh-hhhhchhhhhhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY--------------VEKLMGGT-----SVAQI-FKESGEAYFREY  153 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~--------------ie~~~~G~-----~i~~~-~~~~g~~~fr~~  153 (287)
                      +..|+|+||+|||||||+..||..++..|||+|.+              .++. .|.     ++.+. +...+...|++.
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~-~gvphhlidi~~~~~e~~s~~~F~~~  118 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDR-GGVPHHLLGEVDPARGELTPADFRSL  118 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGG-TTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHH-cCCCEeeccccCcccCccCHHHHHHH
Confidence            67899999999999999999999999999999987              2332 244     44555 567788999999


Q ss_pred             HHHHHHHhhcCCCeEEecCCceEeccccHH---------------------hhc-CCcEEEEecCHHHHHHHHhhcCCCC
Q 023118          154 ESKALQKLSLVPQQVVATGGGAVVRPLNWR---------------------FMR-QGITVFLNVPLDALARRIAAVGTDS  211 (287)
Q Consensus       154 e~~~l~~l~~~~~~via~ggG~v~~~~~~~---------------------~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~  211 (287)
                      +.++++++......+|.+||+.+.......                     .++ .+++|||+.+.+.+.+||..|.   
T Consensus       119 a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~---  195 (339)
T 3a8t_A          119 AGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRV---  195 (339)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhc---
Confidence            999999988777789999986332211111                     122 2678999999999999998752   


Q ss_pred             CCCcC
Q 023118          212 FPLLD  216 (287)
Q Consensus       212 RPll~  216 (287)
                      +|++.
T Consensus       196 ~~Ml~  200 (339)
T 3a8t_A          196 DDMLE  200 (339)
T ss_dssp             HHHHH
T ss_pred             cHhhh
Confidence            45554

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.28  E-value=1.7e-11  Score=102.06  Aligned_cols=111  Identities=16%  Similarity=0.258  Sum_probs=70.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHh-ccCCccccchhHHHHHhCCCchh--hhhhhhchhhhhhhHHHHHHHhh---cCCCeE
Q 023118           95 QCLFLVGMMGSGKTTVGEILSD-ALDYTFADSDKYVEKLMGGTSVA--QIFKESGEAYFREYESKALQKLS---LVPQQV  168 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~-~l~~~fid~d~~ie~~~~G~~i~--~~~~~~g~~~fr~~e~~~l~~l~---~~~~~v  168 (287)
                      ..|+|+|++||||||+++.|+. .+++.++++|.+.+... +.+..  ..+...++..++......+....   .....+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~v   81 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM-AHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV   81 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT-TSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEE
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhh-CCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeE
Confidence            4799999999999999999999 78999999998876665 43221  11223344555544445555544   222334


Q ss_pred             EecCCceEeccccHHhh----cC-C---cEEEEecCHHHHHHHHhhcC
Q 023118          169 VATGGGAVVRPLNWRFM----RQ-G---ITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       169 ia~ggG~v~~~~~~~~L----~~-g---~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      +..|..  .....+..+    .. |   .+|||++|++.+.+|+..|+
T Consensus        82 i~d~~~--~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  127 (181)
T 1ly1_A           82 IISDTN--LNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (181)
T ss_dssp             EECSCC--CSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred             EEeCCC--CCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence            433321  111112222    11 3   58999999999999997654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.27  E-value=8.4e-11  Score=100.29  Aligned_cols=171  Identities=16%  Similarity=0.141  Sum_probs=86.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCc--cccchhHHHHHhCCCchhhhhhhhc----h-----hhhh-hhHH----H
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYT--FADSDKYVEKLMGGTSVAQIFKESG----E-----AYFR-EYES----K  156 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~--fid~d~~ie~~~~G~~i~~~~~~~g----~-----~~fr-~~e~----~  156 (287)
                      +|..|+|.|++||||||+++.|+..++..  ++..+.-     .|..+.+++...+    .     ..+. ....    +
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   77 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWN-----SSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYER   77 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETT-----CCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCC-----cHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999988763  4332110     1222222221111    0     0000 0000    1


Q ss_pred             HHHHhhcCCCeEEecCC-----------ceEeccccHHhhc-----CCcEEEEecCHHHHHHHHh-hcCCCCCCCcCC--
Q 023118          157 ALQKLSLVPQQVVATGG-----------GAVVRPLNWRFMR-----QGITVFLNVPLDALARRIA-AVGTDSFPLLDY--  217 (287)
Q Consensus       157 ~l~~l~~~~~~via~gg-----------G~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~-~~~~~~RPll~~--  217 (287)
                      .+.........|+..+.           |.  .......+.     .+.+|||++|++.+.+|+. .|+. ..+...+  
T Consensus        78 ~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~-~~~~~~g~~  154 (213)
T 2plr_A           78 YILPMLKSGFIVISDRYIYTAYARDSVRGV--DIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK-IKPQEAGAD  154 (213)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHHHTTTC--CHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCC-CCTTTTTTT
T ss_pred             HHHHHHhCCCEEEEeCcHhHHHHHHHhhCC--CHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc-ccccccccc
Confidence            11121222344555431           11  011111121     2679999999999999998 6642 1221100  


Q ss_pred             --CCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          218 --DSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       218 --~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                        ...+.++    ...+.+....+.|.. ++.       . ...+||++ .++++++++|.+.+.+++.+
T Consensus       155 ~~~~~d~~e----~~~~~~~r~~~~~~~~~~~-------~-~~~~Id~~-~~~e~v~~~I~~~l~~~~~~  211 (213)
T 2plr_A          155 IFPGLSPEE----GFLKYQGLITEVYDKLVKD-------E-NFIVIDGT-KTPKEIQIQIRKFVGELIDN  211 (213)
T ss_dssp             TCTTSCHHH----HHHHHHHHHHHHHHHHTTT-------T-TCEEEETT-SCHHHHHHHHHHHHHHHHHT
T ss_pred             cccccchhh----hHHHHHHHHHHHHHHHHhh-------C-CEEEEECC-CCHHHHHHHHHHHHHHHhhc
Confidence              0011121    112233333445543 220       0 01126776 59999999999999887654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.24  E-value=6.8e-11  Score=100.74  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=26.1

Q ss_pred             ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           85 GREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        85 s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      |+++.+   |++++|+||||||||||+++|++.+.
T Consensus         1 s~~m~~---g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            1 SNAMNK---ANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ----CC---CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcCCC---CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            455666   99999999999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.22  E-value=4.5e-12  Score=120.95  Aligned_cols=66  Identities=21%  Similarity=0.291  Sum_probs=56.2

Q ss_pred             ccEEEcceEEEc--CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           64 HDVESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        64 ~~l~~~~l~~~~--~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      ..++++||+++|  ++..+|+++||++++   |++++|+||||||||||+++|+|++.    ++|.+.   ++|.++.
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~---i~G~~i~   85 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISP---GQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQ---IDGVSWD   85 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEE---ESSCBTT
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcC---CCEEEEECCCCChHHHHHHHHhCCCC----CCeEEE---ECCEECC
Confidence            369999999999  667899999999999   99999999999999999999999874    345553   3566553

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.21  E-value=1.7e-10  Score=100.80  Aligned_cols=112  Identities=16%  Similarity=0.246  Sum_probs=65.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCchhhhh---hhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSVAQIF---KESGEAYFREYESKALQKLSLVPQQVVAT  171 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i~~~~---~~~g~~~fr~~e~~~l~~l~~~~~~via~  171 (287)
                      +|+|+||+||||+|+++.|+..++..+|++|+++.+.. .+..+....   -..|.-.--+.-..++.+-......++-.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ilD   81 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFD   81 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEec
Confidence            68999999999999999999999999999999987654 232222111   12222111111222333322223333333


Q ss_pred             CC-ceEeccccHH-hhc-C----CcEEEEecCHHHHHHHHhhc
Q 023118          172 GG-GAVVRPLNWR-FMR-Q----GITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       172 gg-G~v~~~~~~~-~L~-~----g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      |- -++.....+. .+. .    ..+|+|++|.+.+.+|+..|
T Consensus        82 GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R  124 (206)
T 3sr0_A           82 GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGR  124 (206)
T ss_dssp             SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred             CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCC
Confidence            31 1111111111 121 1    46899999999999999876

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.21  E-value=8.7e-12  Score=112.51  Aligned_cols=66  Identities=29%  Similarity=0.349  Sum_probs=55.7

Q ss_pred             ccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           64 HDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        64 ~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      .+++++|+++.|++   ..+|+++||++++   |++++|+||||||||||+++|+|.+.+   + |.+.   ++|.++.
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~-G~I~---i~g~~i~   84 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPS---GTTCALVGHTGSGKSTIAKLLYRFYDA---E-GDIK---IGGKNVN   84 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---E-EEEE---ETTEEGG
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECC---CCEEEEECCCCCCHHHHHHHHhccCCC---C-eEEE---ECCEEhh
Confidence            36999999999975   4699999999999   999999999999999999999999864   3 5443   3566553

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.21  E-value=2.2e-10  Score=98.14  Aligned_cols=165  Identities=13%  Similarity=0.068  Sum_probs=85.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHH----HhCCCchhhhhhhhc------hh-hh---hhhHHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEK----LMGGTSVAQIFKESG------EA-YF---REYESKALQ  159 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~----~~~G~~i~~~~~~~g------~~-~f---r~~e~~~l~  159 (287)
                      |..|+|+|++||||||+++.|+..++..+++.+.+.+.    .. |..+.++|...+      .. .|   |....+.+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~   87 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEI-GKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIK   87 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHH-HHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999876555554221100    00 111222221100      00 01   000001233


Q ss_pred             HhhcCCCeEEecC----------C--ceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcch
Q 023118          160 KLSLVPQQVVATG----------G--GAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADS  222 (287)
Q Consensus       160 ~l~~~~~~via~g----------g--G~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~  222 (287)
                      ........|+...          +  |.  .......+.     ...+|||++|++++.+|+..+.  .+ .   +. . 
T Consensus        88 ~~l~~~~~vi~dr~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~--~~-~---~~-~-  157 (215)
T 1nn5_A           88 EKLSQGVTLVVDRYAFSGVAFTGAKENF--SLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH--ER-Y---EN-G-  157 (215)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHTSTTC--CHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-------CT-T---CS-H-
T ss_pred             HHHHCCCEEEEeCCcccHHHHHhhcCCC--CHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc--cc-c---ch-H-
Confidence            3222334555542          1  11  111122222     2679999999999999986321  12 1   11 1 


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          223 YTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       223 ~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                        +..+.+.+.|.+..+.|. ++..+           ||++ .++++++++|.+.+...+..
T Consensus       158 --~~~~~~~~~~~~~~~~~~-~~~~~-----------Id~~-~~~e~~~~~i~~~l~~~l~~  204 (215)
T 1nn5_A          158 --AFQERALRCFHQLMKDTT-LNWKM-----------VDAS-KSIEAVHEDIRVLSEDAIAT  204 (215)
T ss_dssp             --HHHHHHHHHHHHHTTCTT-SCEEE-----------EETT-SCHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHhCC-CCEEE-----------EECC-CCHHHHHHHHHHHHHHHHhh
Confidence              122344444444444332 33333           5764 69999999999999887653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.20  E-value=5.8e-12  Score=114.07  Aligned_cols=63  Identities=29%  Similarity=0.374  Sum_probs=55.2

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|+++.|++    ..+|+++||+++    |++++|+||||||||||+++|+|.+ |   ++|.+.   ++|.++
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~----Ge~~~i~G~NGsGKSTLlk~l~Gl~-p---~~G~I~---~~g~~~   67 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN----GEKVIILGPNGSGKTTLLRAISGLL-P---YSGNIF---INGMEV   67 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC----SSEEEEECCTTSSHHHHHHHHTTSS-C---CEEEEE---ETTEEG
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC----CEEEEEECCCCCCHHHHHHHHhCCC-C---CCcEEE---ECCEEC
Confidence            4789999999986    789999999997    8999999999999999999999999 8   677665   456554

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.19  E-value=4.2e-12  Score=126.63  Aligned_cols=157  Identities=17%  Similarity=0.208  Sum_probs=91.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC----C--ccccchhHHHHHhCCCchhhhhhh-hchhhhhhhHHHHHHHhhcCCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD----Y--TFADSDKYVEKLMGGTSVAQIFKE-SGEAYFREYESKALQKLSLVPQ  166 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~----~--~fid~d~~ie~~~~G~~i~~~~~~-~g~~~fr~~e~~~l~~l~~~~~  166 (287)
                      +..|.|+|++||||||+++.|+..++    .  .++|+|.+-.. ..+.   ..|.. .....++.. .++++.+.....
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~-l~~~---~~f~~~er~~~i~ri-~~v~~~~~~~g~  470 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE-LSSE---LGFTREDRHTNIQRI-AFVATELTRAGA  470 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH-TCTT---CCCSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH-hccc---cCCChhHHHHHHHHH-HHHHHHHHhCCC
Confidence            67899999999999999999999876    3  45677765432 2121   01110 011111111 124445444444


Q ss_pred             eEEecCCceE--eccccHHhhcC-C--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh
Q 023118          167 QVVATGGGAV--VRPLNWRFMRQ-G--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY  241 (287)
Q Consensus       167 ~via~ggG~v--~~~~~~~~L~~-g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y  241 (287)
                      .|+++.-...  .+..+++++.. |  ++|||++|++++.+|.      .+|+....   .    ...+..++..|.++|
T Consensus       471 ~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~------~r~l~~~~---~----~~~i~~~~~~r~~~~  537 (573)
T 1m8p_A          471 AVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD------KRGIYAAA---R----RGEIKGFTGVDDPYE  537 (573)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC------SSCHHHHH---H----TTSSSSCBTTTBCCC
T ss_pred             EEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHh------cccchhhh---h----HHHHHHHHhcccccc
Confidence            5555421100  01123344554 6  7899999999999993      24443210   0    011223334566777


Q ss_pred             h--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          242 A--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       242 ~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      .  .++++            |||+.+++++++++|++.+..
T Consensus       538 ~p~~~dl~------------IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          538 TPEKADLV------------VDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             CCSSCSEE------------ECTTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCEE------------EECCCCCHHHHHHHHHHHHHh
Confidence            5  25544            599999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.19  E-value=1e-11  Score=123.68  Aligned_cols=68  Identities=26%  Similarity=0.399  Sum_probs=59.2

Q ss_pred             ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ..++++|++++|++  ..+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~---~~g~~~~~  409 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQ---GKTVALVGRSGSGKSTIANLFTRFYDV---DSGSIC---LDGHDVRD  409 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEE---ECCEEhhh
Confidence            36999999999974  6799999999999   999999999999999999999999998   577664   46766543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.18  E-value=8.8e-12  Score=111.34  Aligned_cols=62  Identities=16%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      +++++|++++|++  +|+++||++++    ++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++
T Consensus         1 ml~~~~l~~~y~~--~l~~isl~i~~----e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~   62 (240)
T 2onk_A            1 MFLKVRAEKRLGN--FRLNVDFEMGR----DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVR---LNGADI   62 (240)
T ss_dssp             CCEEEEEEEEETT--EEEEEEEEECS----SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEEC
T ss_pred             CEEEEEEEEEeCC--EEeeeEEEECC----EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEEC
Confidence            4789999999986  49999999984    89999999999999999999999988   567664   355444

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.18  E-value=8.4e-11  Score=115.95  Aligned_cols=123  Identities=21%  Similarity=0.235  Sum_probs=83.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccc-----hhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHh------h
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS-----DKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKL------S  162 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~-----d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l------~  162 (287)
                      ...|+++|++||||||+++.|+..+++.++|+     |.+.++..++..+.++|...+++.|+..+..+...+      .
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L  114 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYL  114 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999997777654     888877774445678888788888776555433322      1


Q ss_pred             --cCCCeEE--ecCCceEeccccHHhhcC-Cc-EEEEe--cC-HHHHHHHHhhcCCCCCCCcCC
Q 023118          163 --LVPQQVV--ATGGGAVVRPLNWRFMRQ-GI-TVFLN--VP-LDALARRIAAVGTDSFPLLDY  217 (287)
Q Consensus       163 --~~~~~vi--a~ggG~v~~~~~~~~L~~-g~-~I~L~--~~-~e~l~~Ri~~~~~~~RPll~~  217 (287)
                        .....||  +++++...+...++.+++ |+ ++||.  ++ ++.+.+|+..+. ..+|.+..
T Consensus       115 ~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~-~~rPdl~~  177 (520)
T 2axn_A          115 AKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK-ISSPDYKD  177 (520)
T ss_dssp             HHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT-TTSGGGTT
T ss_pred             HhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh-hcCCcccc
Confidence              2344556  555555444444444543 53 45555  45 899999997654 35787764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.17  E-value=7.1e-12  Score=112.58  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=53.5

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      +++++|+++.    .+|+++||++.+   |++++|+||||||||||+++|+|.+.|   + |.+.   ++|.++.
T Consensus         4 ~l~~~~l~~~----~vl~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~---~~g~~~~   64 (249)
T 2qi9_C            4 VMQLQDVAES----TRLGPLSGEVRA---GEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQ---FAGQPLE   64 (249)
T ss_dssp             EEEEEEEEET----TTEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEE---ETTEEGG
T ss_pred             EEEEEceEEE----EEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEE---ECCEECC
Confidence            6899999987    689999999999   999999999999999999999999988   6 6664   4566553

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.16  E-value=1.1e-11  Score=123.42  Aligned_cols=68  Identities=25%  Similarity=0.403  Sum_probs=59.7

Q ss_pred             ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ..++++|++++|++  +.+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++.+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~---G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~---~~g~~~~~  409 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPA---GKTVALVGRSGSGKSTIASLITRFYDI---DEGHIL---MDGHDLRE  409 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECT---TCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEE---ETTEETTT
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEE---ECCEEccc
Confidence            36999999999973  6799999999999   999999999999999999999999998   677664   46776644

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.14  E-value=2.3e-11  Score=121.72  Aligned_cols=68  Identities=32%  Similarity=0.401  Sum_probs=60.1

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|+ +..+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   +.|.+.   .+|.++.++
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~---~~g~~i~~~  422 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKP---GQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQIL---VDGIDIRKI  422 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCT---TCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEE---ETTEEGGGS
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEE---ECCEEhhhC
Confidence            599999999996 46799999999999   999999999999999999999999999   677665   478777554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.14  E-value=1.5e-11  Score=122.86  Aligned_cols=68  Identities=18%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             cEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|+  +..+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   ++|.+.   .+|.++.++
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~---Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~---i~g~~i~~~  410 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKP---GSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVE---VDELDVRTV  410 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECT---TCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEE---ESSSBGGGB
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEE---ECCEEcccC
Confidence            599999999994  46799999999999   999999999999999999999999999   677665   477777554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.14  E-value=3.1e-11  Score=103.38  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS  125 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~  125 (287)
                      |..|+|+|++||||||+++.|+..++..+++.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~   41 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV   41 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            78999999999999999999999887766665

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.13  E-value=1.9e-10  Score=101.12  Aligned_cols=77  Identities=13%  Similarity=0.122  Sum_probs=37.1

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh--hh-CCeEEeccccccccccccCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY--AN-ADATVSLLNLAACIGLKDVLD  264 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y--~~-ad~~v~~~~~a~~~~~idt~~  264 (287)
                      ..+|||++|++++.+|+..|+   |+..... ...|   ++++.+.|.+..+.|  .. ++..+           ||.+ 
T Consensus       148 D~vi~Ld~~~e~~~~Ri~~R~---r~~e~~~-~~~~---~~rv~~~~~~~~~~~~~~~~~~~~v-----------Id~~-  208 (230)
T 2vp4_A          148 DLIIYLRTSPEVAYERIRQRA---RSEESCV-PLKY---LQELHELHEDWLIHQRRPQSCKVLV-----------LDAD-  208 (230)
T ss_dssp             SEEEEEECCHHHHHHHHHHHC---CGGGTTC-CHHH---HHHHHHHHHHHHTSCCSSCCCEEEE-----------EECC-
T ss_pred             CEEEEEeCCHHHHHHHHHHcC---CcccccC-cHHH---HHHHHHHHHHHHHHhcccCCCCEEE-----------EECC-
Confidence            679999999999999998763   3322211 1122   466777777776555  22 33333           6776 


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 023118          265 ITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       265 ~t~~eva~~i~~~i~~~l~  283 (287)
                      .++++|.++|.+.+++.+.
T Consensus       209 ~~~eev~~~I~~~l~~~~~  227 (230)
T 2vp4_A          209 LNLENIGTEYQRSESSIFD  227 (230)
T ss_dssp             C------------------
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            4999999999999887654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.13  E-value=2.7e-11  Score=120.67  Aligned_cols=68  Identities=19%  Similarity=0.359  Sum_probs=60.2

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|++++|++  ..+|+|+||++++   |+.++|+||||||||||+++|+|.+.|   ++|.+.   .+|.++.++
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~---~~g~~~~~~  408 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEK---GETVAFVGMSGGGKSTLINLIPRFYDV---TSGQIL---IDGHNIKDF  408 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECT---TCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEE---ETTEEGGGS
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECC---CCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEE---ECCEEhhhC
Confidence            5999999999964  5799999999999   999999999999999999999999999   677665   478777554

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.12  E-value=5.7e-10  Score=99.71  Aligned_cols=77  Identities=12%  Similarity=0.073  Sum_probs=51.3

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH------hhhh---hCCeEEeccccccccc
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS------EAYA---NADATVSLLNLAACIG  258 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~------~~Y~---~ad~~v~~~~~a~~~~  258 (287)
                      .++|||++|++++.+|+..|+   ||..... ...+   .+.+.+.|+.+.      +.|.   .....           
T Consensus       176 d~vi~L~~~~e~~~~Ri~~R~---r~~~~~~-~~~~---~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~-----------  237 (263)
T 1p5z_B          176 DGIIYLQATPETCLHRIYLRG---RNEEQGI-PLEY---LEKLHYKHESWLLHRTLKTNFDYLQEVPIL-----------  237 (263)
T ss_dssp             SEEEEEECCHHHHHHHHHHHC---CGGGTTC-CHHH---HHHHHHHHHHHHTTCCCCCSCGGGGGSCEE-----------
T ss_pred             CeEEEEECCHHHHHHHHHhcC---CccccCc-cHHH---HHHHHHHHHHHHhhccchhhhhhhccCCEE-----------
Confidence            579999999999999998764   5543322 1222   344555555442      2332   22222           


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          259 LKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       259 ~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                      +||++. ++++|+++|++.|..++.
T Consensus       238 ~Id~~~-~~eev~~~I~~~l~~~l~  261 (263)
T 1p5z_B          238 TLDVNE-DFKDKYESLVEKVKEFLS  261 (263)
T ss_dssp             EEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred             EEECCC-CHHHHHHHHHHHHHHHHh
Confidence            378887 999999999999988764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.09  E-value=7.3e-11  Score=103.35  Aligned_cols=38  Identities=26%  Similarity=0.163  Sum_probs=22.8

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHH-hcc
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILS-DAL  118 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La-~~l  118 (287)
                      .+..+++||++.+   |++++|+||||||||||+++|+ +.+
T Consensus        14 ~~~~~~~sl~v~~---G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           14 AQTQGPGSMLKSV---GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --------CCEEC---CCEEEEECSCC----CHHHHHHC---
T ss_pred             hcccCCCCcccCC---CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4578899999999   9999999999999999999999 876

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.09  E-value=1.4e-10  Score=112.66  Aligned_cols=141  Identities=24%  Similarity=0.275  Sum_probs=93.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchh-----HHHHHhCCC-chhhhhhhhchhhhhhhHHHHHHHhhcCCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDK-----YVEKLMGGT-SVAQIFKESGEAYFREYESKALQKLSLVPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~-----~ie~~~~G~-~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~  167 (287)
                      ...|+++|++||||||+++.|+..+++.|++++.     +.++.. |. ...++|...|+..||..+..++..+......
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~-g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV-KTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc-cCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999998887877775     555555 44 4457788888877877776655544322222


Q ss_pred             EEecCC-ceEeccccHH---------hhcC-C-cEEEEe---cCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHH
Q 023118          168 VVATGG-GAVVRPLNWR---------FMRQ-G-ITVFLN---VPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSA  232 (287)
Q Consensus       168 via~gg-G~v~~~~~~~---------~L~~-g-~~I~L~---~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~  232 (287)
                      +.+++| ++|.+..+..         .+++ + .++||.   .+++.+.+|+..+. ..+|.+...+   .    ++..+
T Consensus       118 l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~-~~rp~~~~~~---~----e~~~~  189 (469)
T 1bif_A          118 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK-LGSPDYVNRD---S----DEATE  189 (469)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT-TTSTTTTTSC---H----HHHHH
T ss_pred             HHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh-hcCCcccCCC---H----HHHHH
Confidence            333444 4556554432         2332 5 578998   77999999987643 3567665322   1    33446


Q ss_pred             HHHHHHhhhhh
Q 023118          233 LSKERSEAYAN  243 (287)
Q Consensus       233 l~~~R~~~Y~~  243 (287)
                      .|.+|.+.|+.
T Consensus       190 ~~~~R~~~y~~  200 (469)
T 1bif_A          190 DFMRRIECYEN  200 (469)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhcc
Confidence            66677666654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.08  E-value=1.9e-11  Score=121.34  Aligned_cols=150  Identities=21%  Similarity=0.326  Sum_probs=86.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC-----ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHH-HHHHhhcCCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY-----TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK-ALQKLSLVPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~-----~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~-~l~~l~~~~~~  167 (287)
                      +..|+|+|++||||||+++.|+..++.     .|+|+|.+..... +.           ..|+..+.. .++.+......
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~-~~-----------~~f~~~er~~~l~~i~~~~~~  439 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS-RG-----------LGFSKEDRITNILRVGFVASE  439 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC-TT-----------CCSSHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc-cc-----------ccccHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999998763     7889887653322 21           111111111 01111100001


Q ss_pred             EEecCCceEecc---------ccHHhhcC-C-cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118          168 VVATGGGAVVRP---------LNWRFMRQ-G-ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE  236 (287)
Q Consensus       168 via~ggG~v~~~---------~~~~~L~~-g-~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~  236 (287)
                      ++.+|+++|++.         .+++.+.+ + ++|||++|++++.+|+.      |++....       ....+..++..
T Consensus       440 ~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~------r~~~~~~-------~~~~i~~~~~v  506 (546)
T 2gks_A          440 IVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV------KGLYKKA-------KEGLIKGFTGV  506 (546)
T ss_dssp             HHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC------SSHHHHC-------------CCBTT
T ss_pred             HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh------ccccccc-------cHHHHHHHHhh
Confidence            122344444432         12233433 4 78999999999999963      3322110       01123333334


Q ss_pred             HHhhhh--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          237 RSEAYA--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       237 R~~~Y~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      |.+.|.  .+|++            ||+++.++++++++|++.+..
T Consensus       507 r~~~e~~~~adiv------------IDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          507 DDPYEPPVAPEVR------------VDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             TBCCCCCSSCSEE------------EETTTSCHHHHHHHHHHHHHH
T ss_pred             hhccccccCCcEE------------EECCCCCHHHHHHHHHHHHHH
Confidence            555553  25654            588888999999999998865

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.07  E-value=1.4e-09  Score=96.67  Aligned_cols=110  Identities=15%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCC----chhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGT----SVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~----~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      ...++|+|++||||||+++.|+..++..++++|+++.+.. .|.    .+.+++. .|.....+....++++......  
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~--   84 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEAD--   84 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGG--
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcc--
Confidence            4679999999999999999999999999999999987753 233    3333332 3544444444444443222110  


Q ss_pred             EecCCceEec--cccH---Hhhc-----CCcEEEEecCHHHHHHHHhhcC
Q 023118          169 VATGGGAVVR--PLNW---RFMR-----QGITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       169 ia~ggG~v~~--~~~~---~~L~-----~g~~I~L~~~~e~l~~Ri~~~~  208 (287)
                        ++.|.+++  |.+.   +.|.     -..+|||++|.+++.+|+..|.
T Consensus        85 --~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~  132 (230)
T 3gmt_A           85 --CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR  132 (230)
T ss_dssp             --GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred             --cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence              12233332  2232   2233     1479999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.06  E-value=4.5e-12  Score=106.38  Aligned_cols=63  Identities=13%  Similarity=0.090  Sum_probs=52.6

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      ++..++++.|++..+++++||++++   |++++|+||||||||||+++|++.+ +   +.|.+.   ..|.++
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~---Ge~v~L~G~nGaGKTTLlr~l~g~l-~---~~G~V~---~~g~~i   70 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEK---AIMVYLNGDLGAGKTTLTRGMLQGI-G---HQGNVK---SPTYTL   70 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSS---CEEEEEECSTTSSHHHHHHHHHHHT-T---CCSCCC---CCTTTC
T ss_pred             cCCHHHHHHHHHHHHHhccccccCC---CCEEEEECCCCCCHHHHHHHHHHhC-C---CCCeEE---ECCEee
Confidence            3455678889888899999999999   9999999999999999999999999 6   456554   356554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.05  E-value=7.4e-11  Score=127.62  Aligned_cols=68  Identities=26%  Similarity=0.276  Sum_probs=60.3

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++||+++|++   .++|+|+||+|++   |+.++|||++|||||||+++|.+.+.|   +.|.+.   .+|.++.++
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~---Ge~vaIVG~SGsGKSTL~~lL~rl~~p---~~G~I~---iDG~di~~i 1146 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEP---GQTLALVGPSGCGKSTVVALLERFYDT---LGGEIF---IDGSEIKTL 1146 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECT---TCEEEEECSTTSSTTSHHHHHTTSSCC---SSSEEE---ETTEETTTB
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECC---CCEEEEECCCCChHHHHHHHHhcCccC---CCCEEE---ECCEEhhhC
Confidence            5999999999953   4699999999999   999999999999999999999999999   567665   478887765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.05  E-value=4.2e-11  Score=109.89  Aligned_cols=57  Identities=23%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++|+++.+  ..+|+++||++++   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus        39 ~~l~~~~l~~~~--~~vl~~isl~i~~---Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I   95 (290)
T 2bbs_A           39 DSLSFSNFSLLG--TPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKI   95 (290)
T ss_dssp             -----------C--CCSEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEE
T ss_pred             ceEEEEEEEEcC--ceEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEE
Confidence            368999999863  5799999999999   999999999999999999999999987   45544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.01  E-value=4.2e-10  Score=100.35  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=70.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhH---------HHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKY---------VEKLMGGTSVAQIFKESGEAYFREYESKALQKLS  162 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~---------ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~  162 (287)
                      +..|+|+|+|||||||+++.|++.++  +.|+|+|.+         +.... |.++.+++..    .++.....+++.+.
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~-g~~~~~~~~~----~~~~~~~~~~~~~~  106 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEY-GKDSVEYTKD----FAGKMVESLVTKLS  106 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTC-SSTTHHHHHH----HHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHc-CchHHHHhhH----HHHHHHHHHHHHHH
Confidence            78999999999999999999999986  567899987         32222 5555554321    12333344555554


Q ss_pred             cC-CCeEEecCCceE-eccccHHhhc-CCc---EEEEecCHHHHHHHHhhc
Q 023118          163 LV-PQQVVATGGGAV-VRPLNWRFMR-QGI---TVFLNVPLDALARRIAAV  207 (287)
Q Consensus       163 ~~-~~~via~ggG~v-~~~~~~~~L~-~g~---~I~L~~~~e~l~~Ri~~~  207 (287)
                      .. ...|+.++.+.. ........++ .|.   ++|+++|++.+.+|+..|
T Consensus       107 ~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R  157 (253)
T 2p5t_B          107 SLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR  157 (253)
T ss_dssp             HTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             hcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence            43 355555544432 2233344454 354   457799999999998765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.00  E-value=8.1e-10  Score=94.86  Aligned_cols=36  Identities=28%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~i  129 (287)
                      |++|+|+||+|||||||+++|++.++  ..|++.|.++
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            89999999999999999999999998  7788888764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.99  E-value=2.1e-09  Score=91.45  Aligned_cols=31  Identities=26%  Similarity=0.319  Sum_probs=26.7

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++.+   |+.|+|+|||||||||++++|++.+.+
T Consensus         2 ~i~~---g~~i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            2 DNEK---GLLIVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             --CC---CCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             CCCC---CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            4566   999999999999999999999998844

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.95  E-value=4.5e-10  Score=121.50  Aligned_cols=67  Identities=25%  Similarity=0.315  Sum_probs=57.9

Q ss_pred             cEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .++++|++++|+   +.++|+|+||++++   |+.++|+||+|||||||+++|.+.+.|   +.|.+.   .+|.++.+
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~---G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~---idG~~i~~  484 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNA---GQTVALVGSSGCGKSTIISLLLRYYDV---LKGKIT---IDGVDVRD  484 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECT---TCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEE---ETTEETTT
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecC---CcEEEEEecCCCcHHHHHHHhcccccc---ccCccc---CCCccchh
Confidence            599999999995   46799999999999   999999999999999999999999999   566554   35655544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.95  E-value=2.6e-10  Score=123.09  Aligned_cols=66  Identities=26%  Similarity=0.298  Sum_probs=56.6

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      .++++|++++|++   .++|+|+||++++   |+.++|+||||||||||+++|+|.+.|   +.|.+.   .+|.++.
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~---G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~---i~g~~i~  455 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKS---GQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVS---IDGQDIR  455 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECT---TCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEE---ETTEEGG
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEHH
Confidence            5999999999963   4699999999999   999999999999999999999999998   566553   3455443

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.94  E-value=5.9e-10  Score=99.71  Aligned_cols=108  Identities=12%  Similarity=0.051  Sum_probs=70.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh--------------------hhhh-hhchhhhhhh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA--------------------QIFK-ESGEAYFREY  153 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~--------------------~~~~-~~g~~~fr~~  153 (287)
                      ..|+|+||+|||||||++.||+.++..++++|.+...  .|.++.                    +.+. ..+...|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~--~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~   79 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCC--PQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR   79 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGC--GGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhcc--CCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence            3689999999999999999999999999999986421  122110                    0111 2355667766


Q ss_pred             HHHHHHHhhcCCCeEEecCCceEeccccHHhhc-----CC---cEEEEecCH-HHHHHHHhhcC
Q 023118          154 ESKALQKLSLVPQQVVATGGGAVVRPLNWRFMR-----QG---ITVFLNVPL-DALARRIAAVG  208 (287)
Q Consensus       154 e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~-----~g---~~I~L~~~~-e~l~~Ri~~~~  208 (287)
                      ....+ ++......+|.+||+...   ...++.     .+   .+|||++|. +.+.+|+..|.
T Consensus        80 ~~~~i-~~~~~g~~vIl~gg~~~~---~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           80 LIFEV-DWRKSEEGLILEGGSISL---LNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             HHHHH-HTTTTSSEEEEEECCHHH---HHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHH-HHHhCCCCeEEeccHHHH---HHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence            66666 554444455665543211   112222     22   689999997 99999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.94  E-value=7.7e-09  Score=90.27  Aligned_cols=38  Identities=18%  Similarity=0.075  Sum_probs=25.4

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +.-|+++||++++   |++++|+||||||||||+++|++.+
T Consensus        10 ~~~l~~isl~i~~---G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           10 HSSGLVPRGSMNN---IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ------------C---CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccccCCceecCC---CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468999999999   9999999999999999999999987

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.94  E-value=2.5e-10  Score=119.65  Aligned_cols=60  Identities=18%  Similarity=0.146  Sum_probs=54.7

Q ss_pred             ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      ++++++|++++|++  +.+|+++||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.
T Consensus       670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~---GeivaIiGpNGSGKSTLLklLaGll~P---~sG~I~  731 (986)
T 2iw3_A          670 AIVKVTNMEFQYPGTSKPQITDINFQCSL---SSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVY  731 (986)
T ss_dssp             EEEEEEEEEECCTTCSSCSEEEEEEEEET---TCEEEECSCCCHHHHHHHHHHTTSSCC---SEEEEE
T ss_pred             ceEEEEeeEEEeCCCCceeeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence            57999999999964  6799999999999   999999999999999999999999998   566654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.93  E-value=6.9e-10  Score=111.37  Aligned_cols=59  Identities=22%  Similarity=0.198  Sum_probs=51.8

Q ss_pred             CCccEEE--------cceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchh
Q 023118           62 NAHDVES--------GTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDK  127 (287)
Q Consensus        62 ~~~~l~~--------~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~  127 (287)
                      |..+|++        +|++++|++. .+++++| .+.+   |++++|+||||||||||+++|+|.+.|   ++|.
T Consensus        80 p~~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~---Ge~~~LiG~NGsGKSTLlkiL~Gll~p---~~G~  147 (607)
T 3bk7_A           80 PFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKD---GMVVGIVGPNGTGKTTAVKILAGQLIP---NLCE  147 (607)
T ss_dssp             SSCCCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHTTSSCC---CTTT
T ss_pred             CcceEEEecCCccccCCeEEEECCCCeeeCCCC-CCCC---CCEEEEECCCCChHHHHHHHHhCCCCC---CCCc
Confidence            3345788        8999999876 4899999 9999   999999999999999999999999988   4555

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.93  E-value=2.5e-08  Score=88.80  Aligned_cols=80  Identities=14%  Similarity=0.158  Sum_probs=47.3

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCH
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP  267 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~  267 (287)
                      ..+|||++|+++..+|+..|+...|  ...+ ...|   ++++.+.|.+....|.  +..+           ||.+ .++
T Consensus       156 Dlvi~Ldv~~e~~~~Ri~~R~~~dr--~E~~-~~~~---~~rv~~~y~~la~~~~--~~~v-----------IDa~-~si  215 (236)
T 3lv8_A          156 DLTLYLDIDPKLGLERARGRGELDR--IEKM-DISF---FERARERYLELANSDD--SVVM-----------IDAA-QSI  215 (236)
T ss_dssp             SEEEEEECCHHHHHHC-----CCCT--TTTS-CHHH---HHHHHHHHHHHHHHCT--TEEE-----------EETT-SCH
T ss_pred             CEEEEEeCCHHHHHHHHHhcCCcch--hhhh-HHHH---HHHHHHHHHHHHHHCC--CEEE-----------EeCC-CCH
Confidence            6899999999999999987642111  1111 1122   3444444443333222  2333           6876 599


Q ss_pred             HHHHHHHHHHHHHHhhhcCC
Q 023118          268 TTIAMEVLVQAQKYLNSKRR  287 (287)
Q Consensus       268 ~eva~~i~~~i~~~l~~~~~  287 (287)
                      ++|.++|.+.++.++...+|
T Consensus       216 eeV~~~I~~~l~~~l~~~~~  235 (236)
T 3lv8_A          216 EQVTADIRRALQDWLSQVNR  235 (236)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHhhcc
Confidence            99999999999998876543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.91  E-value=3.7e-09  Score=91.37  Aligned_cols=27  Identities=33%  Similarity=0.395  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |+.|+|+||||||||||++.|++.+++
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            899999999999999999999999865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.91  E-value=5.3e-10  Score=120.67  Aligned_cols=68  Identities=28%  Similarity=0.331  Sum_probs=59.8

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .++++|+++.|++   .++|+|+||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++..+
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~---Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~---i~g~~i~~~ 1100 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKK---GQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVF---LDGKEIKQL 1100 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECS---SSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEE---SSSSCTTSS
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEE---ECCEEcccC
Confidence            5999999999964   3699999999999   999999999999999999999999999   677665   478777544

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.89  E-value=9.7e-10  Score=108.77  Aligned_cols=55  Identities=22%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             EEE-cceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchh
Q 023118           66 VES-GTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDK  127 (287)
Q Consensus        66 l~~-~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~  127 (287)
                      .++ +|++++|++. .+++++| ++.+   |++++|+||||||||||+++|+|.+.|   ++|.
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~---Ge~~~LvG~NGaGKSTLlk~l~Gl~~p---~~G~   77 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKE---GMVVGIVGPNGTGKSTAVKILAGQLIP---NLCG   77 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHHTSSCC---CTTT
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCc
Confidence            355 6999999876 5899999 9999   999999999999999999999999988   5555

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.88  E-value=1.4e-09  Score=107.05  Aligned_cols=34  Identities=9%  Similarity=0.127  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC-------ccccchh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY-------TFADSDK  127 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~-------~fid~d~  127 (287)
                      |..|.|+|+|||||||+++.|+..|+.       .|+|+|.
T Consensus       395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            789999999999999999999999986       6888887

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.87  E-value=8.4e-08  Score=83.92  Aligned_cols=78  Identities=15%  Similarity=0.197  Sum_probs=50.1

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCH
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP  267 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~  267 (287)
                      ..+|||++|+++..+|+..|+...|  ...+ ...|   ++++.+.|......|. ....+           ||++ .++
T Consensus       133 Dlvi~Ld~~~e~~~~Ri~~R~~~dr--~E~~-~~~~---~~rv~~~y~~l~~~~~-~~~~v-----------IDa~-~s~  193 (213)
T 4edh_A          133 DLTLVFDLPVEIGLARAAARGRLDR--FEQE-DRRF---FEAVRQTYLQRAAQAP-ERYQV-----------LDAG-LPL  193 (213)
T ss_dssp             SEEEEEECCHHHHHHHHCCCSSCCT--TTTS-CHHH---HHHHHHHHHHHHHHCT-TTEEE-----------EETT-SCH
T ss_pred             CEEEEEeCCHHHHHHHHHhcCCcCc--cccc-HHHH---HHHHHHHHHHHHHHCC-CcEEE-----------EeCC-CCH
Confidence            6799999999999999987642111  1111 1122   3445555554443342 12333           6876 599


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 023118          268 TTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       268 ~eva~~i~~~i~~~l~~  284 (287)
                      ++|.++|.+.+..++..
T Consensus       194 eeV~~~I~~~l~~~l~~  210 (213)
T 4edh_A          194 AEVQAGLDRLLPNLLER  210 (213)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.86  E-value=9.4e-11  Score=108.38  Aligned_cols=50  Identities=18%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +|+++||++.|+ ..+|+++||++++   |++++|+||||||||||+++|++.+
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~---Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPK---KNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTT---CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecC---CCEEEEECCCCCcHHHHHHHHhhhc
Confidence            488999999998 6799999999999   9999999999999999999999976

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.86  E-value=6.6e-11  Score=111.50  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=67.9

Q ss_pred             eeccccceeeccCCCCcE--EEEEcCCCCCHHHHHHHHHhccCCcc--------------------ccchhHHHHHhCCC
Q 023118           79 WLLKAKGREVASCLDGQC--LFLVGMMGSGKTTVGEILSDALDYTF--------------------ADSDKYVEKLMGGT  136 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~--i~LvG~~GsGKSTl~k~La~~l~~~f--------------------id~d~~ie~~~~G~  136 (287)
                      .+++.+++.+.+   |+.  |+|+||+||||||++++|++.++++|                    +|.|..+++.. |+
T Consensus        10 ~il~~l~~~i~~---g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~-g~   85 (359)
T 2ga8_A           10 DVLQLLDNRIED---NYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQ-PN   85 (359)
T ss_dssp             HHHHHHHHTTTT---CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECC-HH
T ss_pred             HHHHHHHHHhcc---CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHh-Cc
Confidence            367778888887   877  99999999999999999999999999                    99999987776 99


Q ss_pred             chhhhhhhhchhhhhhhHHHHHHH
Q 023118          137 SVAQIFKESGEAYFREYESKALQK  160 (287)
Q Consensus       137 ~i~~~~~~~g~~~fr~~e~~~l~~  160 (287)
                      ++.++|...|+ .||..|...++.
T Consensus        86 ~i~~if~~~ge-~fr~~E~~~~~~  108 (359)
T 2ga8_A           86 KVAEMIENQGL-FKDHVEDVNFQP  108 (359)
T ss_dssp             HHHHHHHTTTC-CGGGTTCTTCCC
T ss_pred             cHHHHHHHhcc-cchHHHhhhccc
Confidence            99999999999 999998765443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.84  E-value=2.7e-09  Score=105.53  Aligned_cols=58  Identities=22%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|++. .|+.++|++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~---Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~i  343 (538)
T 1yqt_A          286 TLVTYPRLVKDYGSF-RLEVEPGEIKK---GEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKI  343 (538)
T ss_dssp             EEEEECCEEEEETTE-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHHTSSCC---SBCCC
T ss_pred             eEEEEeeEEEEECCE-EEEeCccccCC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEE
Confidence            479999999999875 68999999999   999999999999999999999999988   45544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.83  E-value=2.8e-09  Score=107.00  Aligned_cols=58  Identities=24%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++|+++.|++. .|+.++|++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~---Gei~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I  413 (607)
T 3bk7_A          356 TLVEYPRLVKDYGSF-KLEVEPGEIRK---GEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKV  413 (607)
T ss_dssp             EEEEECCEEEECSSC-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHHTSSCC---SBSCC
T ss_pred             eEEEEeceEEEecce-EEEecccccCC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence            479999999999864 68999999999   999999999999999999999999988   55554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.83  E-value=1.3e-08  Score=85.82  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .|+.++|+||||||||||++.|++.+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            489999999999999999999999775

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.81  E-value=1.1e-08  Score=92.42  Aligned_cols=110  Identities=16%  Similarity=0.241  Sum_probs=64.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc-cCCccccchhHHHHHhCCCchh---hhhhhhchhhhhhhHHHHHHHhh---cCCCe
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA-LDYTFADSDKYVEKLMGGTSVA---QIFKESGEAYFREYESKALQKLS---LVPQQ  167 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~-l~~~fid~d~~ie~~~~G~~i~---~~~~~~g~~~fr~~e~~~l~~l~---~~~~~  167 (287)
                      ..|+|+|++||||||+++.|+.. +++.++++|.+.+... +.+..   .+. ..++..+.....+.+....   .....
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~   80 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM-AHEERDEYKYT-KKKEGIVTGMQFDTAKSILYGGDSVKG   80 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT-TSCCCC---CC-HHHHHHHHHHHHHHHHHHTTSCTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhc-cCCcccccccc-hhhhhHHHHHHHHHHHHHHhhccCCCE
Confidence            47899999999999999999986 4899999997765544 32110   111 1122222222222333332   22223


Q ss_pred             EEecCCceEeccccHHhh----c-CC---cEEEEecCHHHHHHHHhhcC
Q 023118          168 VVATGGGAVVRPLNWRFM----R-QG---ITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L----~-~g---~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      ++..|..  .....+..+    . .+   .+|||++|++.+.+|+..|.
T Consensus        81 vi~d~~~--~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           81 VIISDTN--LNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             EEECSCC--CCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred             EEEeCCC--CCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence            3333321  111112222    1 23   68999999999999998764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.78  E-value=1.9e-07  Score=81.67  Aligned_cols=77  Identities=13%  Similarity=0.165  Sum_probs=49.1

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCH
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP  267 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~  267 (287)
                      ..+|||++|+++..+|+..|+...|  .... ...|   ++++.+.|.+-...|  ..+.+           ||.+ .++
T Consensus       134 Dl~i~Ldv~~e~~~~Ri~~R~~~dr--~E~~-~~~f---~~rv~~~y~~la~~~--~~~~v-----------IDa~-~s~  193 (213)
T 4tmk_A          134 DLTLYLDVTPEVGLKRARARGELDR--IEQE-SFDF---FNRTRARYLELAAQD--KSIHT-----------IDAT-QPL  193 (213)
T ss_dssp             SEEEEEECCHHHHHHHHHHHSSCCT--TTTS-CHHH---HHHHHHHHHHHHHTC--TTEEE-----------EETT-SCH
T ss_pred             CEEEEEeCCHHHHHHHHHhcCCccc--hhhh-HHHH---HHHHHHHHHHHHHHC--CcEEE-----------ECCC-CCH
Confidence            6799999999999999988753111  1111 1122   234444444332222  22333           7876 599


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 023118          268 TTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       268 ~eva~~i~~~i~~~l~~  284 (287)
                      ++|.++|.+.+.+++..
T Consensus       194 eeV~~~I~~~l~~~l~~  210 (213)
T 4tmk_A          194 EAVMDAIRTTVTHWVKE  210 (213)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.78  E-value=5e-09  Score=103.72  Aligned_cols=58  Identities=22%  Similarity=0.278  Sum_probs=51.8

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .+++++++++.|++. .|...|+++.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus       268 ~~l~~~~l~~~~~~~-~l~~~~~~i~~---Gei~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i  325 (538)
T 3ozx_A          268 TKMKWTKIIKKLGDF-QLVVDNGEAKE---GEIIGILGPNGIGKTTFARILVGEITA---DEGSV  325 (538)
T ss_dssp             EEEEECCEEEEETTE-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCC---SBCCE
T ss_pred             ceEEEcceEEEECCE-EEEeccceECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence            468999999999874 47778999999   999999999999999999999999998   56655

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.76  E-value=3.2e-07  Score=79.64  Aligned_cols=76  Identities=17%  Similarity=0.169  Sum_probs=44.0

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCC-cchhhHHHHHHHHHHHHHHhhhhhC--CeEEeccccccccccccCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDS-ADSYTKAFTALSALSKERSEAYANA--DATVSLLNLAACIGLKDVLD  264 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~-~~~~~~~~~~l~~l~~~R~~~Y~~a--d~~v~~~~~a~~~~~idt~~  264 (287)
                      .++|||++|+++..+|+..++..   .-..+. ...|   ++.+.+.|.+   +.+..  .+.+           ||.+ 
T Consensus       126 Dl~i~Ld~~~e~~~~Ri~~r~~~---~dr~e~~~~~f---~~~v~~~Y~~---l~~~~~~~~~~-----------IDa~-  184 (205)
T 4hlc_A          126 DLTIYLNVSAEVGRERIIKNSRD---QNRLDQEDLKF---HEKVIEGYQE---IIHNESQRFKS-----------VNAD-  184 (205)
T ss_dssp             SEEEEEECCHHHHHHHHHC----------CCHHHHHH---HHHHHHHHHH---HHHSCCTTEEE-----------EETT-
T ss_pred             CEEeeeCCCHHHHHHHHHhcCCc---ccchhccCHHH---HHHHHHHHHH---HHHhCCCCEEE-----------EECC-
Confidence            67999999999999999865421   100110 0111   1223333322   22221  2333           7876 


Q ss_pred             CCHHHHHHHHHHHHHHHhhh
Q 023118          265 ITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       265 ~t~~eva~~i~~~i~~~l~~  284 (287)
                      .++++|.++|.+.|.++|+.
T Consensus       185 ~~~e~V~~~i~~~i~~~L~~  204 (205)
T 4hlc_A          185 QPLENVVEDTYQTIIKYLEK  204 (205)
T ss_dssp             SCHHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            59999999999999988763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.74  E-value=9.3e-09  Score=107.85  Aligned_cols=49  Identities=20%  Similarity=0.269  Sum_probs=46.0

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .+...|+++.|+++.+|+++||++.+   |++++|+||||||||||+++|++
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~---Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKR---ARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhC
Confidence            46677999999999999999999999   99999999999999999999984

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.74  E-value=1.4e-08  Score=97.26  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=64.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      ...|+|+|++||||||+++.|+..+++.|++.|.+-                   .|+.....+.+.+......|+.+..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD~~~  318 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG-------------------SWQRCVSSCQAALRQGKRVVIDNTN  318 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC-------------------SHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH-------------------HHHHHHHHHHHHHhcCCcEEEeCCC
Confidence            578999999999999999999999999999998851                   1222233334444444444544433


Q ss_pred             ceE-eccccHHhhcC-C---cEEEEecCHHHHHHHHhhcC
Q 023118          174 GAV-VRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       174 G~v-~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      +.. .+...++++++ +   .+|||++|.+++.+|+..|.
T Consensus       319 ~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~  358 (416)
T 3zvl_A          319 PDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE  358 (416)
T ss_dssp             CSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence            221 11122222322 3   68999999999999998764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.74  E-value=5.4e-08  Score=85.52  Aligned_cols=167  Identities=14%  Similarity=0.191  Sum_probs=89.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCc-----cccchh----HHHHHhCCC--chhhh--hhhhchhhhhhhHHHHHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYT-----FADSDK----YVEKLMGGT--SVAQI--FKESGEAYFREYESKALQ  159 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~-----fid~d~----~ie~~~~G~--~i~~~--~~~~g~~~fr~~e~~~l~  159 (287)
                      +|..|+|.|++||||||+++.|+..++..     +-.++.    .+.+.+.+.  .+...  .-..-.+.+. ....+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~-~~~~I~p   82 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWE-IVDKIKK   82 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHT-THHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence            38999999999999999999999988751     111121    132222111  11100  0000011111 1112222


Q ss_pred             HhhcCCCeEEec-----------CCceEeccccHHhhc--------CCcEEEE-ecCHHHHHHHHhhcCCCCCCCcCCCC
Q 023118          160 KLSLVPQQVVAT-----------GGGAVVRPLNWRFMR--------QGITVFL-NVPLDALARRIAAVGTDSFPLLDYDS  219 (287)
Q Consensus       160 ~l~~~~~~via~-----------ggG~v~~~~~~~~L~--------~g~~I~L-~~~~e~l~~Ri~~~~~~~RPll~~~~  219 (287)
                      .+.. ...||+.           ++|  .....+..+.        ..++||| ++|+++..+|+..++  .| +   +.
T Consensus        83 aL~~-g~~VI~DRy~~S~~ayq~~~~--l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~--dr-~---E~  153 (216)
T 3tmk_A           83 DLLE-GKNIVMDRYVYSGVAYSAAKG--TNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD--ER-Y---ET  153 (216)
T ss_dssp             HHHT-TCEEEEESCHHHHHHHHHTTC--CTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC--CT-T---CC
T ss_pred             HHHc-CCEEEEeccHhHHHHHHHhcC--CCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc--cc-c---cH
Confidence            2322 2334432           111  1112222221        2579999 999999999975322  11 1   11


Q ss_pred             cchhhHHHHHHHHHHHHHHhh---hhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          220 ADSYTKAFTALSALSKERSEA---YANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       220 ~~~~~~~~~~l~~l~~~R~~~---Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                       ..|   ++++.+.|.+.-..   |....+.+           ||+...++++|.++|.+.|...+..
T Consensus       154 -~~f---~~rvr~~Y~~la~~~~~~~~~~~~v-----------ID~a~~s~eeV~~~I~~~i~~~l~~  206 (216)
T 3tmk_A          154 -VKF---QEKVKQTFMKLLDKEIRKGDESITI-----------VDVTNKGIQEVEALIWQIVEPVLST  206 (216)
T ss_dssp             -HHH---HHHHHHHHHHHHHHHHHTTCCSEEE-----------EECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             -HHH---HHHHHHHHHHHHHhccccCCCCEEE-----------EeCCCCCHHHHHHHHHHHHHHHHhc
Confidence             223   35555555554443   22234444           7866689999999999999988764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.72  E-value=1.1e-07  Score=84.04  Aligned_cols=28  Identities=32%  Similarity=0.457  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      |..|+|.|++||||||+++.|+..+...
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            8999999999999999999999988544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.72  E-value=1.2e-08  Score=87.92  Aligned_cols=27  Identities=41%  Similarity=0.480  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |++++|+||||||||||+++|++.+.+
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.70  E-value=2.5e-09  Score=100.33  Aligned_cols=53  Identities=13%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++.+++++.|+ +..+++++ |.+.+   |++++|+||||||||||+++|++...+
T Consensus        44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~---Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           44 DPLLRQVIDQPFILGVRAIDGL-LTCGI---GQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CSTTCCCCCSEECCSCHHHHHH-SCEET---TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CCeeecccceecCCCCEEEEee-eeecC---CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3688999999998 67899999 99999   999999999999999999999999988

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.70  E-value=1.6e-09  Score=104.78  Aligned_cols=58  Identities=21%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++.+++++.|+ +..+|+++ |.+.+   |++++|+||||||||||+++|++...+   |.+.+
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~---Gq~~~IvG~sGsGKSTLl~~Iag~~~~---~~G~i  188 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINAL-LTVGR---GQRMGLFAGSGVGKSVLLGMMARYTRA---DVIVV  188 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHH-SCCBT---TCEEEEEECTTSSHHHHHHHHHHHSCC---SEEEE
T ss_pred             CceEEeccceecCCCceEEeee-EEecC---CCEEEEECCCCCCHHHHHHHHhcccCC---CeEEE
Confidence            4689999999997 67899999 99999   999999999999999999999999988   55544

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.70  E-value=1.3e-08  Score=95.23  Aligned_cols=103  Identities=13%  Similarity=0.152  Sum_probs=69.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhH--HHHHhCCCch--------------------hhhhhhhchhhhhh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY--VEKLMGGTSV--------------------AQIFKESGEAYFRE  152 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~--ie~~~~G~~i--------------------~~~~~~~g~~~fr~  152 (287)
                      ..|+|+||+|||||||++.|+..++..+|+.|.+  +    .+.++                    .+.........|+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvY----r~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~   83 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVY----QGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKK   83 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTB----TTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceecccccccc----ccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHH
Confidence            4799999999999999999999999889999987  2    23222                    11222445667777


Q ss_pred             hHHHHHHHhhcCCCeEEecCCceEeccccHHhhcCCcEEEEe-cCHHH---HHHHHh
Q 023118          153 YESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLN-VPLDA---LARRIA  205 (287)
Q Consensus       153 ~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~-~~~e~---l~~Ri~  205 (287)
                      .....+.++......+|.+||+.+..    +.+..++.+|.+ .+++.   +.+|+.
T Consensus        84 ~a~~~i~~i~~~g~~~IlvGGt~ly~----~~l~~~l~~~~~~~d~~~~~Rlrrrl~  136 (340)
T 3d3q_A           84 RAEKYIKDITRRGKVPIIAGGTGLYI----QSLLYNYAFEDESISEDKMKQVKLKLK  136 (340)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHH----HHHHBCSCCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcEEEECChhhhH----HHHHhcccccCCCCChHHHHHHHHHHH
Confidence            77777777765566788888754432    233345557888 88873   555553

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.70  E-value=3.1e-08  Score=90.22  Aligned_cols=113  Identities=16%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCC-chhhhhh----hhchhhhhhhHHHHHHHhh-cCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGT-SVAQIFK----ESGEAYFREYESKALQKLS-LVP  165 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~-~i~~~~~----~~g~~~fr~~e~~~l~~l~-~~~  165 (287)
                      +..|+|+|||||||||+++.|+..+  ++.+|++|.+..... |. .+..-+.    ......+.......+.++. ...
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~  111 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP-NFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGY  111 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTST-THHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhch-hhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            7889999999999999999999888  778899988752211 10 0000000    0011233333333444433 333


Q ss_pred             CeEEecCCceEe-ccccHHhhcC-Cc---EEEEecCHHHH----HHHHhhc
Q 023118          166 QQVVATGGGAVV-RPLNWRFMRQ-GI---TVFLNVPLDAL----ARRIAAV  207 (287)
Q Consensus       166 ~~via~ggG~v~-~~~~~~~L~~-g~---~I~L~~~~e~l----~~Ri~~~  207 (287)
                      ..|+.++.+... .....+.+++ |.   ++|+.+|++..    .+|+..+
T Consensus       112 ~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          112 NLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             CEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            444443332211 1122333443 43   68999999999    8888643

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.69  E-value=3.8e-07  Score=80.10  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      |..|+|.|++||||||+++.|+..+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            6789999999999999999999988

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.62  E-value=1.4e-08  Score=94.53  Aligned_cols=79  Identities=24%  Similarity=0.311  Sum_probs=63.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCc--------------------hhhhhhhhchhhhhhhH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTS--------------------VAQIFKESGEAYFREYE  154 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~--------------------i~~~~~~~g~~~fr~~e  154 (287)
                      ..|+|+||+|||||||++.||..++..+++.|.+..  ..|++                    +.+.+...+...|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv--y~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a   83 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI--YRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA   83 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT--BTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh--hcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence            479999999999999999999999999999998741  12444                    23345567788899999


Q ss_pred             HHHHHHhhcCCCeEEecCCce
Q 023118          155 SKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus       155 ~~~l~~l~~~~~~via~ggG~  175 (287)
                      ...++++......+|.+||+.
T Consensus        84 ~~~i~~i~~~g~~~IlvGGt~  104 (323)
T 3crm_A           84 LAAMAKATARGRIPLLVGGTM  104 (323)
T ss_dssp             HHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHHHHHHHcCCeEEEECCch
Confidence            999998877777888888753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.57  E-value=2.6e-09  Score=98.19  Aligned_cols=50  Identities=16%  Similarity=0.152  Sum_probs=45.5

Q ss_pred             cEEEcceEEEcCCeeeccccceee-------------------ccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREV-------------------ASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i-------------------~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++++++|++.|+  ++++++++.+                   .+   |++|+|+||+|||||||+++|++.++
T Consensus        37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~---g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRI---PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCC---CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCC---CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            588999999994  6889999987                   66   99999999999999999999999887

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.57  E-value=3.6e-08  Score=98.91  Aligned_cols=52  Identities=25%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             ceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           70 TFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        70 ~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++|+.. ..+++++ .+.+   |++++|+||||||||||+++|+|.+.|   ++|.+
T Consensus        82 ~~~~~Y~~~~~~l~~l~-~~~~---Gei~~LvGpNGaGKSTLLkiL~Gll~P---~~G~i  134 (608)
T 3j16_B           82 HVTHRYSANSFKLHRLP-TPRP---GQVLGLVGTNGIGKSTALKILAGKQKP---NLGRF  134 (608)
T ss_dssp             TEEEECSTTSCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHHTSSCC---CTTTT
T ss_pred             CeEEEECCCceeecCCC-CCCC---CCEEEEECCCCChHHHHHHHHhcCCCC---CCceE
Confidence            578888753 3566665 5778   999999999999999999999999998   56654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.55  E-value=3.4e-09  Score=92.55  Aligned_cols=45  Identities=24%  Similarity=0.288  Sum_probs=37.7

Q ss_pred             EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++|+.+.+|+++    .+   |++++|+||||||||||+++|+|. .|   ++|.+
T Consensus         8 k~~g~~~~l~~i----~~---Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I   52 (208)
T 3b85_A            8 KTLGQKHYVDAI----DT---NTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQV   52 (208)
T ss_dssp             CSHHHHHHHHHH----HH---CSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSC
T ss_pred             CCHhHHHHHHhc----cC---CCEEEEECCCCCCHHHHHHHHhcC-CC---cCCee
Confidence            456667788885    77   999999999999999999999998 65   55554

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.52  E-value=2.5e-07  Score=81.68  Aligned_cols=73  Identities=8%  Similarity=0.079  Sum_probs=38.2

Q ss_pred             CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCC
Q 023118          187 QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDIT  266 (287)
Q Consensus       187 ~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t  266 (287)
                      -..+|||++|+++..+|+ .+   .|  .... +..|   ++++.+.|.+....|.. ...+           ||.+ .+
T Consensus       146 PDl~I~Ldv~~e~~~~Ri-~r---dr--~E~~-~~e~---~~rv~~~y~~la~~~~~-~~~v-----------IDa~-~s  202 (223)
T 3ld9_A          146 PDITFIIDVDINESLSRS-CK---NG--YEFA-DMEF---YYRVRDGFYDIAKKNPH-RCHV-----------ITDK-SE  202 (223)
T ss_dssp             CSEEEEEECC-----------------------CHHH---HHHHHHHHHHHHHHCTT-TEEE-----------EESS-CS
T ss_pred             CCeEEEEeCCHHHHHHHh-cc---Cc--cccc-hHHH---HHHHHHHHHHHHHHCCC-CEEE-----------EcCC-CC
Confidence            378999999999999998 32   12  1111 1222   45566666665555532 2333           6775 59


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 023118          267 PTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       267 ~~eva~~i~~~i~~~l~  283 (287)
                      +++| ++|.+.+.+.+.
T Consensus       203 ieeV-~~I~~~l~~~lg  218 (223)
T 3ld9_A          203 TYDI-DDINFVHLEVIK  218 (223)
T ss_dssp             SSCC-CHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHh
Confidence            9999 999999987764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.50  E-value=5.5e-08  Score=81.50  Aligned_cols=31  Identities=23%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           83 AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        83 ~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      ++||++++   |++++|+||||||||||++.+.+
T Consensus         1 ~vsl~i~~---gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            1 SMKLTIPE---LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             CEEEEEES---SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CccccCCC---CEEEEEECCCCCCHHHHHHHHcc
Confidence            57999999   99999999999999999997553

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.50  E-value=2.6e-09  Score=99.68  Aligned_cols=53  Identities=21%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++++++.|+...+++++++++.+   |++++|+|+||||||||++.|++.+.+
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~---g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGR---AIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCC---SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHeeCCcccccChHHHHHhCCcccCC---CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            57888999999877899999999999   999999999999999999999988755

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.49  E-value=5.4e-08  Score=83.72  Aligned_cols=37  Identities=27%  Similarity=0.343  Sum_probs=26.0

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ..+++|  .++.+   |++++|+||||||||||+++|++.+.
T Consensus         9 ~~~~~~--~~i~~---Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A            9 KPTARG--QPAAV---GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ------------C---CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CcCCCC--CCCCC---CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            446666  68888   99999999999999999999999984

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.49  E-value=1.5e-08  Score=91.38  Aligned_cols=48  Identities=17%  Similarity=0.031  Sum_probs=40.5

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++++++.    .+|++++  +.+   |+.++|+|||||||||++++|++.+.+
T Consensus         4 ~~~~l~~l~~~----~vl~~i~--i~~---g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A            4 EIPEFKKLGLP----DKVLELC--HRK---MGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             --CCGGGSSCC----THHHHGG--GCS---SEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CCCChHHCCCH----HHHHHHh--hCC---CCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            34667777754    4899999  888   999999999999999999999998876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.48  E-value=2.5e-08  Score=96.07  Aligned_cols=49  Identities=24%  Similarity=0.313  Sum_probs=40.7

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcE--EEEEcCCCCCHHHHHHHHHhcc
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQC--LFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~--i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+++.+ ++.|++.+ ++++||++.+   |++  ++|+|+||||||||+++|+|..
T Consensus        16 ~l~~~~-~~~y~~~~-L~~vsl~i~~---Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           16 TVPLAG-HVGFDSLP-DQLVNKSVSQ---GFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             -CCCCC-CC-CC--C-HHHHHHSCC----CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             eEEEee-EEEECCee-cCCCceEecC---CCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            467777 88998877 9999999999   999  9999999999999999999974

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.48  E-value=3.9e-09  Score=102.60  Aligned_cols=48  Identities=17%  Similarity=0.034  Sum_probs=43.8

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++++++|+++.|+      +++|++.+   |++++|+||||||||||+|+|+|.+.+
T Consensus       117 ~mi~~~nl~~~y~------~vsl~i~~---Ge~v~IvGpnGsGKSTLlr~L~Gl~~p  164 (460)
T 2npi_A          117 TMKYIYNLHFMLE------KIRMSNFE---GPRVVIVGGSQTGKTSLSRTLCSYALK  164 (460)
T ss_dssp             THHHHHHHHHHHH------HHHHHSSS---CCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred             chhhhhhhhehhh------cCceEeCC---CCEEEEECCCCCCHHHHHHHHhCcccc
Confidence            4688999999986      79999999   999999999999999999999999843

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.46  E-value=1.5e-07  Score=87.54  Aligned_cols=47  Identities=15%  Similarity=0.198  Sum_probs=38.4

Q ss_pred             ceEEEcCCeeeccccceeeccCCCCc------EEEEEcCCCCCHHHHHHHHHhccC
Q 023118           70 TFCDSLDGKWLLKAKGREVASCLDGQ------CLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        70 ~l~~~~~~~~il~~~s~~i~~~l~g~------~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .+++.|++.+.+++++..+..   +.      +|+|+||+||||||+++.|++.+.
T Consensus        65 ll~~~~~~~~~l~~~~~~~l~---~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           65 LLSFYVTARQTLQQATYQFLG---KPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT---CCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHhhcchHHHHHHHHHHhc---cCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345566777788888877765   43      899999999999999999999886

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.45  E-value=7e-09  Score=95.89  Aligned_cols=51  Identities=14%  Similarity=0.070  Sum_probs=43.1

Q ss_pred             cEEEcceEEEcCCeeecccccee-----------------------eccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           65 DVESGTFCDSLDGKWLLKAKGRE-----------------------VASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~-----------------------i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .|++++|++.|+  ++++++++.                       +.+   |++|+|+||||||||||+++|++.+.+
T Consensus        43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPV---PFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCC---CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCC---CEEEEEECCCCchHHHHHHHHHhhccc
Confidence            588999999995  456665554                       666   999999999999999999999998865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.45  E-value=1.1e-07  Score=95.38  Aligned_cols=50  Identities=28%  Similarity=0.262  Sum_probs=44.2

Q ss_pred             cceEEEcCC-eeeccccceeeccCCCC-----cEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           69 GTFCDSLDG-KWLLKAKGREVASCLDG-----QCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        69 ~~l~~~~~~-~~il~~~s~~i~~~l~g-----~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .++++.|++ ..++++++|++.+   |     ++++|+||||||||||+++|+|.+.|.
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~---G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~  405 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEE---GEFSDSEILVMMGENGTGKTTLIKLLAGALKPD  405 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECC---EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred             cceeEEecCcccccCceEEEEec---CccccceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            667788865 4689999999988   6     789999999999999999999999883

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.44  E-value=5.4e-07  Score=77.15  Aligned_cols=25  Identities=40%  Similarity=0.442  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      |.+|+|+|++||||||+++.|++.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999999976

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.43  E-value=4.2e-08  Score=83.28  Aligned_cols=48  Identities=10%  Similarity=0.083  Sum_probs=35.2

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +++++|+++.|+ ..++++  |.+.+   |..++|+|++|||||||++.|++..
T Consensus         3 ~l~~~~~~~~~~-~~~l~~--~~~~~---~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A            3 NLNYQQTHFVMS-APDIRH--LPSDT---GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             --------CEEE-ESSGGG--SSCSC---SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             chhhhhhhheee-cCCHhH--CCCCC---CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999997 467877  88888   9999999999999999999998865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.43  E-value=1.2e-08  Score=94.87  Aligned_cols=52  Identities=19%  Similarity=0.197  Sum_probs=43.6

Q ss_pred             EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++++++ |  ..+++++++.+++   |+.++|+||+|||||||+++|++.+.+   +.|.+
T Consensus       151 ~~~v~f-y--~~~l~~l~~~i~~---g~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i  202 (330)
T 2pt7_A          151 YNLLDN-K--EQAISAIKDGIAI---GKNVIVCGGTGSGKTTYIKSIMEFIPK---EERII  202 (330)
T ss_dssp             TTTSTT-H--HHHHHHHHHHHHH---TCCEEEEESTTSCHHHHHHHGGGGSCT---TSCEE
T ss_pred             cCchhh-H--HHHHhhhhhhccC---CCEEEEECCCCCCHHHHHHHHhCCCcC---CCcEE
Confidence            444444 4  3488999999999   999999999999999999999999988   45554

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.40  E-value=2.4e-06  Score=73.59  Aligned_cols=72  Identities=10%  Similarity=0.154  Sum_probs=43.2

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCH
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP  267 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~  267 (287)
                      ..+|||++|++...+|...++   |  .  +.. .|   ++.+.+.|.+....|. ..+.+           ||.+ .++
T Consensus       123 Dl~i~Ld~~~e~~~~R~~~~d---r--~--e~~-ef---~~rv~~~y~~la~~~~-~~~~~-----------IDa~-~~~  178 (197)
T 3hjn_A          123 DLTFYIDVDVETALKRKGELN---R--F--EKR-EF---LERVREGYLVLAREHP-ERIVV-----------LDGK-RSI  178 (197)
T ss_dssp             SEEEEEECCHHHHHHHC---C---T--T--CCH-HH---HHHHHHHHHHHHHHCT-TTEEE-----------EETT-SCH
T ss_pred             CceeecCcChHHHHHhCcCcC---c--c--ccH-HH---HHHHHHHHHHHHHhCC-CCEEE-----------EcCC-CCH
Confidence            679999999999999954321   2  1  111 22   3444444443322221 12333           6876 599


Q ss_pred             HHHHHHHHHHHHHHhh
Q 023118          268 TTIAMEVLVQAQKYLN  283 (287)
Q Consensus       268 ~eva~~i~~~i~~~l~  283 (287)
                      ++|.++|++.|++.++
T Consensus       179 eeV~~~I~~~i~~rl~  194 (197)
T 3hjn_A          179 EEIHRDVVREVKRRWK  194 (197)
T ss_dssp             HHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999987654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.38  E-value=2.7e-08  Score=93.60  Aligned_cols=56  Identities=25%  Similarity=0.240  Sum_probs=46.3

Q ss_pred             EEcceEEE---cCC--eeec---------cccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           67 ESGTFCDS---LDG--KWLL---------KAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        67 ~~~~l~~~---~~~--~~il---------~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +++++++.   |+.  ..+|         +++++.+++   |+.++|+||+|||||||+++|++.+.+   +.+.+
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~---G~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I  206 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQL---ERVIVVAGETGSGKTTLMKALMQEIPF---DQRLI  206 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHT---TCCEEEEESSSSCHHHHHHHHHTTSCT---TSCEE
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhc---CCEEEEECCCCCCHHHHHHHHHhcCCC---CceEE
Confidence            56777777   742  3344         999999999   999999999999999999999999988   45544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.37  E-value=2.5e-07  Score=91.49  Aligned_cols=54  Identities=24%  Similarity=0.210  Sum_probs=40.5

Q ss_pred             cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ++.+++||.. -|+-..+.+.+  .|++++|+||||||||||+|+|+|.+.|   +.|.+
T Consensus         3 ~~~~~~~~~~-~f~l~~l~~~~--~Gei~gLiGpNGaGKSTLlkiL~Gl~~p---~~G~i   56 (538)
T 3ozx_A            3 GEVIHRYKVN-GFKLFGLPTPK--NNTILGVLGKNGVGKTTVLKILAGEIIP---NFGDP   56 (538)
T ss_dssp             CCEEEESSTT-SCEEECCCCCC--TTEEEEEECCTTSSHHHHHHHHTTSSCC---CTTCT
T ss_pred             CCCceecCCC-ceeecCCCCCC--CCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCcc
Confidence            3567888732 23334455443  3999999999999999999999999998   55654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.36  E-value=1.3e-07  Score=92.40  Aligned_cols=53  Identities=23%  Similarity=0.042  Sum_probs=44.9

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ..+|+++||++++    ++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++..
T Consensus        17 ~~~l~~vsl~i~~----e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~---~~g~~~~~   69 (483)
T 3euj_A           17 WNGFFARTFDFDE----LVTTLSGGNGAGKSTTMAGFVTALIP---DLTLLN---FRNTTEAG   69 (483)
T ss_dssp             ETTEEEEEEECCS----SEEEEECCTTSSHHHHHHHHHHHHCC---CTTTCC---CCCTTSCS
T ss_pred             cccccceEEEEcc----ceEEEECCCCCcHHHHHHHHhcCCCC---CCCEEE---ECCEEccc
Confidence            4579999999985    89999999999999999999999998   677765   46766643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.36  E-value=6e-08  Score=95.32  Aligned_cols=54  Identities=13%  Similarity=0.188  Sum_probs=45.1

Q ss_pred             ccEEEcceEEEcCCeeeccccce-eeccCCCCcEEEEEcCCCCCHHHHHHH--HHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGR-EVASCLDGQCLFLVGMMGSGKTTVGEI--LSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~-~i~~~l~g~~i~LvG~~GsGKSTl~k~--La~~l~~  120 (287)
                      .+++.+++.+..++..+|+++++ .+++   |++++|+||||||||||++.  +++.+.+
T Consensus        11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~---Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~   67 (525)
T 1tf7_A           11 NNSEHQAIAKMRTMIEGFDDISHGGLPI---GRSTLVSGTSGTGKTLFSIQFLYNGIIEF   67 (525)
T ss_dssp             ---CCSSCCEECCCCTTHHHHTTSSEET---TSEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred             CCccccccccccCCchhHHHhcCCCCCC---CeEEEEEcCCCCCHHHHHHHHHHHHHHhC
Confidence            34666777766667889999999 9999   99999999999999999999  6787765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.33  E-value=2e-07  Score=94.22  Aligned_cols=32  Identities=31%  Similarity=0.510  Sum_probs=30.2

Q ss_pred             CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118           77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~  111 (287)
                      ...+|+++||+|++   |++++|+||||||||||+
T Consensus        30 ~~~~L~~vsl~i~~---Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           30 RAHNLKNIDVEIPR---GKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             CSTTCCSEEEEEET---TSEEEEECSTTSSHHHHH
T ss_pred             CccceeccEEEECC---CCEEEEECCCCCCHHHHh
Confidence            45689999999999   999999999999999997

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.31  E-value=7.7e-08  Score=92.33  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=40.4

Q ss_pred             eeeccccceeeccCCCCc--------------------EEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           78 KWLLKAKGREVASCLDGQ--------------------CLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~--------------------~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ..+++++++++++   |+                    +++|+||||||||||+++|+|.+.+   +.|.+
T Consensus        36 ~~~l~~is~~i~~---Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p---~~GsI  100 (413)
T 1tq4_A           36 QEILNLIELRMRA---GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE---EEGAA  100 (413)
T ss_dssp             HHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT---STTSC
T ss_pred             HHHhhhccceecC---CCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc---cCceE
Confidence            4589999999999   99                    9999999999999999999999887   45544

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.31  E-value=9.4e-07  Score=80.61  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~i  129 (287)
                      +..|+|.|++||||||+++.|+..++     ..++|+|.+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            56899999999999999999999877     6789999875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.29  E-value=7.5e-08  Score=88.57  Aligned_cols=48  Identities=23%  Similarity=0.205  Sum_probs=38.3

Q ss_pred             ceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           70 TFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        70 ~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+...++....+.+++|++.+   |++++|+|||||||||+++.|++.+.+
T Consensus        79 ~l~~~l~~~~~~~~l~~~~~~---g~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           79 SVLEMLAKKNSKTELQLGFRK---PAVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             HHHHHHCC--CCCSCCCCSSS---CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcccccccccccCC---CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            344445544445678999998   999999999999999999999999876

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.27  E-value=8.7e-06  Score=70.46  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=24.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .|+.|+|+||||||||||++.|++.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            399999999999999999999998765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.23  E-value=2.2e-07  Score=83.97  Aligned_cols=45  Identities=24%  Similarity=0.378  Sum_probs=39.4

Q ss_pred             EcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118           74 SLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA  123 (287)
Q Consensus        74 ~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi  123 (287)
                      .++...+++++++.+++   |  ++|+||||||||||+++||+.+++.|+
T Consensus        29 ~~~~~~~l~~~~l~~~~---G--vlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           29 PVRNPDQFKALGLVTPA---G--VLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             HHHSHHHHHHTTCCCCS---E--EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             HhhCHHHHHHcCCCCCC---e--EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            34556689999999988   7  999999999999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.22  E-value=7.1e-08  Score=82.37  Aligned_cols=25  Identities=36%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .|+|+|++||||||+++.|+..++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999988753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.22  E-value=4.6e-07  Score=86.99  Aligned_cols=48  Identities=21%  Similarity=0.109  Sum_probs=38.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++|++++|++..++++++|+|         +|+|+||+|||||++.|++...+
T Consensus        10 ~~l~~~~l~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~~~   57 (418)
T 2qag_C           10 GYVGFANLPNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTDLY   57 (418)
T ss_dssp             -----CCCCCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCCCC
T ss_pred             CcEEEEecceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCCCC
Confidence            4689999999999888999999876         89999999999999999998753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.19  E-value=1.3e-07  Score=83.45  Aligned_cols=54  Identities=22%  Similarity=0.341  Sum_probs=45.9

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      .+++++.+.|+...+++++++.+++   |  ++|+||+|||||||++.|++.++..|+.
T Consensus        26 ~~l~~l~~~~~~~~~~~~~~~~~~~---g--~ll~G~~G~GKTtl~~~i~~~~~~~~i~   79 (254)
T 1ixz_A           26 EELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPFIT   79 (254)
T ss_dssp             HHHHHHHHHHHCHHHHHHTTCCCCS---E--EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHCHHHHHHcCCCCCC---e--EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4566777777767789999999988   7  9999999999999999999998877654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.18  E-value=9.3e-08  Score=88.50  Aligned_cols=54  Identities=19%  Similarity=0.294  Sum_probs=46.5

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCC-------cEEEEEcCCCCCHHHHHHHHHhccCCcc
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDG-------QCLFLVGMMGSGKTTVGEILSDALDYTF  122 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g-------~~i~LvG~~GsGKSTl~k~La~~l~~~f  122 (287)
                      ++.++++..||...+++++++.+.+   |       ++++|+||+|+|||||+++|++.++..|
T Consensus        19 lr~~~l~~~~g~~~~~~~l~~~i~~---~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           19 LRPKSLDEFIGQENVKKKLSLALEA---AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHH---HHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             cCCccHHHccCcHHHHHHHHHHHHH---HHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            5667777788888899999998876   5       7899999999999999999999986654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.14  E-value=1.9e-07  Score=83.83  Aligned_cols=54  Identities=22%  Similarity=0.341  Sum_probs=45.9

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      .+++++.+.|+...+++++++.+++   |  ++|+||+|||||||++.|++.++..|+.
T Consensus        50 ~~l~~l~~~~~~~~~l~~~~~~~~~---g--vll~Gp~GtGKTtl~~~i~~~~~~~~i~  103 (278)
T 1iy2_A           50 EELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPFIT  103 (278)
T ss_dssp             HHHHHHHHHHHCHHHHHHTTCCCCC---E--EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHCHHHHHHcCCCCCC---e--EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence            3456777777777789999999988   7  9999999999999999999998877654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.14  E-value=1.8e-07  Score=89.86  Aligned_cols=52  Identities=13%  Similarity=0.098  Sum_probs=43.8

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .++++++++.|+...+|+++ +. .+   |+.++|+||+||||||+++.|++.+.+.
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~---ggii~I~GpnGSGKTTlL~allg~l~~~  194 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL-IK-RP---HGIILVTGPTGSGKSTTLYAGLQELNSS  194 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-HT-SS---SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             CCCHHHcCCCHHHHHHHHHH-HH-hc---CCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence            45677888888766788887 53 66   9999999999999999999999999873

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.12  E-value=1.3e-06  Score=76.64  Aligned_cols=27  Identities=19%  Similarity=0.285  Sum_probs=25.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |+.++|+||||||||||+++|++.+.|
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p   42 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            999999999999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.12  E-value=6.6e-06  Score=70.50  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +.|+|+||||+|||||.+.|....
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999987654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.11  E-value=6e-07  Score=84.58  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=33.2

Q ss_pred             cccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           82 KAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        82 ~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++|++.+   |++++|+|||||||||+++.|++.+.+
T Consensus       148 ~~l~l~~~~---g~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          148 TELQLGFRK---PAVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             CSCCCCSSS---SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcceecCC---CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence            468888888   999999999999999999999999866

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.10  E-value=6.7e-07  Score=87.57  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=33.9

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++||++.+   |++++|+|+|||||||+++.|++.+.+
T Consensus       283 ~~~Isl~i~~---GeVI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          283 DEPLNVEGKA---PFVILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             BCCCCCCSCT---TEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCceeeccC---CeEEEEECCCcccHHHHHHHHHHHhhh
Confidence            4678999998   999999999999999999999998865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.08  E-value=1e-06  Score=89.03  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      ..+|+++||+|++   |++++|+||||||||||+++|.
T Consensus       335 ~~~L~~vsl~I~~---Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          335 EHNLKNVSVKIPL---GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             STTCCSEEEEEET---TSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccccceeEecC---CCEEEEEeeCCCCHHHHHHHHH
Confidence            4589999999999   9999999999999999997653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.06  E-value=1.5e-06  Score=79.58  Aligned_cols=43  Identities=23%  Similarity=0.170  Sum_probs=21.6

Q ss_pred             cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc-cCC
Q 023118           69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA-LDY  120 (287)
Q Consensus        69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~-l~~  120 (287)
                      .||++.|+++.++++++|++         +|+|+||+|||||++.|++. +.+
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~   45 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYP   45 (301)
T ss_dssp             ----------------CEEE---------EEEEETTSSHHHHHHHHHC-----
T ss_pred             CCCcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccC
Confidence            47889999999999998876         89999999999999999886 444

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.06  E-value=2.4e-06  Score=71.26  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=31.5

Q ss_pred             cccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           82 KAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        82 ~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++.+.+   | ..+|+||||||||||+++|...+++
T Consensus        18 ~~~~~~~~~---g-~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           18 KKVVIPFSK---G-FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SCEEEECCS---S-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             ccEEEecCC---C-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            567788888   7 8999999999999999999999887

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.05  E-value=1.5e-06  Score=74.47  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      |+.++|+||||||||||+++|++.+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            89999999999999999999999764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.03  E-value=2e-06  Score=80.46  Aligned_cols=40  Identities=20%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .+.+++.+.+++ |+.++|+|+||||||||+++|++.+.+.
T Consensus       158 ~~~v~~~v~~~l-g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          158 WKFIPKEARPFF-AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             GGGSCTTTGGGT-CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hhhCCHHHHHhh-hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            455777776543 6899999999999999999999999984

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.02  E-value=1.5e-06  Score=78.53  Aligned_cols=39  Identities=15%  Similarity=0.101  Sum_probs=36.0

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+|+++++.+.+   |+.++|+|+||||||||++.|++.+.+
T Consensus        23 ~~Ld~i~~~l~~---G~~~~i~G~~G~GKTTl~~~ia~~~~~   61 (296)
T 1cr0_A           23 TGINDKTLGARG---GEVIMVTSGSGMGKSTFVRQQALQWGT   61 (296)
T ss_dssp             TTHHHHHCSBCT---TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCC---CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            479999999999   999999999999999999999998754

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.02  E-value=8.4e-07  Score=83.71  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .++++++|++.+   | +++|+|+||||||||+++|++.++.
T Consensus        49 ~~l~~v~l~~~~---G-~~~lvG~NGaGKStLl~aI~~l~~~   86 (415)
T 4aby_A           49 ATITQLELELGG---G-FCAFTGETGAGKSIIVDALGLLLGG   86 (415)
T ss_dssp             TTEEEEEEECCS---S-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred             cceeeEEEecCC---C-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            578999999999   9 9999999999999999999988875

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.01  E-value=1.6e-07  Score=83.12  Aligned_cols=57  Identities=18%  Similarity=0.085  Sum_probs=39.6

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      .|+++|+...++.       ++++.+    ++++|+||||||||||+++|++.+.|   ++|.+.   ++|.++
T Consensus         9 ~l~l~~~~~~~~~-------~~~~~~----~~~~i~GpnGsGKSTll~~i~g~~~~---~~G~i~---~~g~~~   65 (227)
T 1qhl_A            9 SLTLINWNGFFAR-------TFDLDE----LVTTLSGGNGAGKSTTMAAFVTALIP---DLTLLH---FRNTTE   65 (227)
T ss_dssp             EEEEEEETTEEEE-------EECHHH----HHHHHHSCCSHHHHHHHHHHHHHHSC---CTTTC----------
T ss_pred             EEEEEeeecccCC-------EEEEcC----cEEEEECCCCCCHHHHHHHHhccccc---CCCeEE---ECCEEc
Confidence            4788888766643       345554    57899999999999999999999998   566654   355544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.01  E-value=2.9e-06  Score=72.68  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=27.7

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++   |++++|+||||||||||++.|++.+.+
T Consensus        21 gi~~---G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           21 GIET---QAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             SEES---SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCC---CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5777   999999999999999999999996544

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.97  E-value=3.5e-06  Score=89.11  Aligned_cols=55  Identities=13%  Similarity=0.101  Sum_probs=41.1

Q ss_pred             CccEEEcc-----eEEEc-CCeeeccccceeeccC----CCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           63 AHDVESGT-----FCDSL-DGKWLLKAKGREVASC----LDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        63 ~~~l~~~~-----l~~~~-~~~~il~~~s~~i~~~----l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+++++++     |++.| ++..++++++|.+.+.    -.|++++|+|||||||||++|.+ |++
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence            34699999     99998 6778999999998640    01699999999999999999999 654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.96  E-value=2.2e-06  Score=81.25  Aligned_cols=44  Identities=20%  Similarity=0.183  Sum_probs=39.1

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..+++++++.+++   |+.++|+||+|||||||++.|++.++..++.
T Consensus       156 ~~~l~~~~~~i~~---~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          156 YDFLKCMVYNIPK---KRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             HHHHHHHHHCCTT---CCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             HHHHHhcccccCC---CCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            3588999999999   9999999999999999999999987665544

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.95  E-value=1.1e-05  Score=74.79  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=53.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH-HHHHhCCCchhh--------------------hhhhhchhhhhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY-VEKLMGGTSVAQ--------------------IFKESGEAYFRE  152 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~-ie~~~~G~~i~~--------------------~~~~~g~~~fr~  152 (287)
                      +..|+|+||+|||||||+..||..++..+|++|.+ +   +.|+++..                    .........|..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv---Yr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~   79 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV---YRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQD   79 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG---BTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc---eeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHH
Confidence            56899999999999999999999999989999876 1   12333311                    112334455665


Q ss_pred             hHHHHHHHhhcCCCeEEecCC
Q 023118          153 YESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus       153 ~e~~~l~~l~~~~~~via~gg  173 (287)
                      .-...++++......+|.+||
T Consensus        80 ~a~~~i~~i~~~gk~pIlVGG  100 (322)
T 3exa_A           80 LATPLITEIHERGRLPFLVGG  100 (322)
T ss_dssp             HHHHHHHHHHHTTCEEEEESC
T ss_pred             HHHHHHHHHHhCCCcEEEEcC
Confidence            556667776655566667776

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.95  E-value=3.1e-06  Score=71.71  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++|+||||||||||+++|++.++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.95  E-value=1.8e-06  Score=89.50  Aligned_cols=47  Identities=28%  Similarity=0.245  Sum_probs=41.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHH-HHhcc
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEI-LSDAL  118 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~-La~~l  118 (287)
                      ..++++++++.     .|+|+||+|++   |++++|+|+||||||||++. |++.+
T Consensus       501 ~~L~v~~l~~~-----~L~~vsl~i~~---Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          501 GWLELNGVTRN-----NLDNLDVRFPL---GVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             CEEEEEEEEET-----TEEEEEEEEES---SSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ceEEEEeeeec-----ccccceEEEcC---CCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            46999999752     69999999999   99999999999999999996 76554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.94  E-value=3.2e-06  Score=76.31  Aligned_cols=30  Identities=23%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++|+||||||||||+++|+|.+.+   +.|.+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~---~~G~i   33 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS---RKASS   33 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC---------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC---CCCcc
Confidence            5899999999999999999999988   55654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.91  E-value=3.8e-06  Score=70.09  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           85 GREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        85 s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++.+.+   |+.++|+||+|+|||||++.|++.+.
T Consensus        32 ~~~~~~---g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           32 NFNPEE---GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             SCCGGG---CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             hccccC---CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456677   99999999999999999999998774

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.91  E-value=2.3e-06  Score=78.71  Aligned_cols=27  Identities=33%  Similarity=0.474  Sum_probs=26.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |++++|+|||||||||+++.|++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            899999999999999999999999987

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.90  E-value=4.1e-06  Score=71.76  Aligned_cols=26  Identities=38%  Similarity=0.508  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      |++++|+|||||||||++++|++.+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc
Confidence            67899999999999999999999874

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.90  E-value=5.4e-06  Score=85.59  Aligned_cols=49  Identities=10%  Similarity=0.061  Sum_probs=41.2

Q ss_pred             cEEEcceEEEc-----CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           65 DVESGTFCDSL-----DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        65 ~l~~~~l~~~~-----~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .+.+++..+..     ++..+++|++|+ .+   |++++|+|||||||||++|.|++.
T Consensus       577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~---g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQ---RRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CEEEEEECCTTHHHHCSSCCCCEEEEEC-SS---SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEeccccEEEccCCCceeeeccccc-CC---CcEEEEECCCCCChHHHHHHHHHH
Confidence            46777665544     456789999999 77   999999999999999999999985

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.88  E-value=4e-06  Score=76.62  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .|+.++|+||||||||||+++|++.+.+   ++|.+.
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~~---~~G~i~  201 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLKL---RVSEVS  201 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccccc---ccccee
Confidence            3899999999999999999999999998   577665

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.85  E-value=3.3e-06  Score=83.01  Aligned_cols=40  Identities=20%  Similarity=0.066  Sum_probs=36.7

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+++++++.+.+   |+.++|+||+||||||++++|++.+.+
T Consensus       247 ~~~l~~l~~~v~~---g~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          247 SGVLAYLWLAIEH---KFSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             HHHHHHHHHHHHT---TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            3478889999998   999999999999999999999999977

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.83  E-value=3.9e-06  Score=87.71  Aligned_cols=50  Identities=8%  Similarity=0.070  Sum_probs=41.2

Q ss_pred             cEEEcceEEEc-------CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           65 DVESGTFCDSL-------DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        65 ~l~~~~l~~~~-------~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .+.+++..+.+       ++..++++++|++.+   |++++|+|||||||||++|.+++.
T Consensus       640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~---g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDS---ERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTS---CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             cEEEEeccchhhhhhhccCCceecccccccCCC---CeEEEEECCCCCchHHHHHHHHHH
Confidence            46666665544       246788999999999   999999999999999999999753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.83  E-value=6e-06  Score=77.59  Aligned_cols=40  Identities=23%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             eeeccccce-------eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           78 KWLLKAKGR-------EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        78 ~~il~~~s~-------~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ...|+++++       ...+   |..++|+||+||||||++++|++.+.+
T Consensus       103 ~~~l~~lg~~~~l~~l~~~~---~g~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          103 VLTMEELGMGEVFKRVSDVP---RGLVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             CCCTTTTTCCHHHHHHHHCS---SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHcCChHHHHHHHhCC---CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence            345666665       5566   889999999999999999999998876

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.79  E-value=7.2e-05  Score=66.59  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ..|+|.|+.||||||+++.|...+|.+.+..+..
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~   35 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGP   35 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChH
Confidence            3799999999999999999999888877776644

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.79  E-value=1.5e-05  Score=75.99  Aligned_cols=47  Identities=23%  Similarity=0.285  Sum_probs=38.1

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      ++++|+ +.|++..     .+++.+   |+.++|+||||||||||+.+|++.+++.
T Consensus         7 l~~~~~-~~~~~~~-----~~~~~~---~~~~~i~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A            7 LELSNF-KSYRGVT-----KVGFGE---SNFTSIIGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             EEEESC-SSCCSEE-----EEECTT---CSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred             EEEeCE-EEECCce-----eEEecC---CCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence            678888 6887543     234566   8999999999999999999999998773

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.78  E-value=9.8e-06  Score=69.17  Aligned_cols=39  Identities=18%  Similarity=0.082  Sum_probs=33.2

Q ss_pred             eeeccccce-eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           78 KWLLKAKGR-EVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        78 ~~il~~~s~-~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ...|+++.. .+.+   |+.++|+||||||||||++.|++.+.
T Consensus         9 ~~~Ld~~~~ggi~~---G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQ---GFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             CHHHHGGGTTSEET---TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             chHHHHHhcCCCcC---CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            346777776 7888   99999999999999999999997653

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.77  E-value=1.1e-05  Score=82.93  Aligned_cols=48  Identities=8%  Similarity=0.015  Sum_probs=40.2

Q ss_pred             cEEEcceEEEc---CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           65 DVESGTFCDSL---DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        65 ~l~~~~l~~~~---~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+.+++..+.+   ++..+++|++|+      |++++|+|||||||||++|.|++..
T Consensus       550 ~i~i~~~rHP~le~~~~~vl~disl~------g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          550 RLQIRAGRHPVVERRTEFVPNDLEMA------HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SEEEEEECCTTGGGTSCCCCEEEEES------SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEEeECceEccCCceEeeeccCC------CcEEEEECCCCCChHHHHHHHHhhh
Confidence            47777776655   556788899888      6899999999999999999999865

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.76  E-value=2.6e-06  Score=85.36  Aligned_cols=56  Identities=21%  Similarity=0.243  Sum_probs=29.3

Q ss_pred             cEEEcceEEEcCCe--eeccccc----------eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           65 DVESGTFCDSLDGK--WLLKAKG----------REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        65 ~l~~~~l~~~~~~~--~il~~~s----------~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++++|+++.|++.  .+++.++          ++++      .++|+||+|||||||+++|+|.+.|.  ++|.+
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp------~iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~v   77 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALP------AIAVIGDQSSGKSSVLEALSGVALPR--GSGIV   77 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCC------CEECCCCTTSCHHHHHHHHHSCC---------C
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCC------eEEEECCCCChHHHHHHHHhCCCCCC--CCCeE
Confidence            47899999999752  3444332          3343      49999999999999999999998663  45554

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.74  E-value=2.7e-05  Score=72.04  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh--------------------hhhhhhchhhhhhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA--------------------QIFKESGEAYFREY  153 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~--------------------~~~~~~g~~~fr~~  153 (287)
                      ...|+|+||+|||||||+..||..++..+|+.|.+-.  +.|+++.                    +.........|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv--Y~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~   87 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI--YKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD   87 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT--BTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc--cccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence            4578999999999999999999999988888886510  1233332                    11123344556655


Q ss_pred             HHHHHHHhhcCCCeEEecCC
Q 023118          154 ESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus       154 e~~~l~~l~~~~~~via~gg  173 (287)
                      -...++++......++-+||
T Consensus        88 a~~~i~~i~~~g~~pilVGG  107 (316)
T 3foz_A           88 ALAEMADITAAGRIPLLVGG  107 (316)
T ss_dssp             HHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHHHhCCCcEEEEcC
Confidence            55667777655555666665

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.74  E-value=2.3e-06  Score=84.54  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=44.9

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA  123 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi  123 (287)
                      .-++++.+.|++..++.++++++ +   |..++|+||+||||||+++.|++.++++|+
T Consensus        84 ~G~~~vk~~i~~~~~l~~~~~~~-~---g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A           84 HGLEKVKERILEYLAVQKLTKSL-K---GPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             SSCHHHHHHHHHHHHHHHHSSSC-C---SCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             ccHHHHHHHHHHHHHHHHhcccC-C---CCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            33556666666666788888888 5   899999999999999999999999988763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.73  E-value=6.7e-06  Score=77.52  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|++++  +.+   |+.++|+||+||||||+++.|++.+.+
T Consensus       127 ~l~~l~--~~~---g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          127 KVLELC--HRK---MGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             SHHHHT--TSS---SEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHh--hcC---CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            555554  667   999999999999999999999998866

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.71  E-value=8.1e-06  Score=75.87  Aligned_cols=27  Identities=37%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |++++|+|||||||||+++.|++.+.+
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~  155 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKN  155 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998866

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.70  E-value=1e-05  Score=76.09  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC-CccccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD-YTFADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~-~~fid~d~~i  129 (287)
                      |++++|+||||+|||||+++|++.+. +   ++|.+.
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~  248 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVS  248 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC---
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccccc---ccCCcc
Confidence            89999999999999999999999988 7   455543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.68  E-value=1.9e-05  Score=72.21  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      .|+.++|+||||+|||||+++|+ .+.+   ++|.+.
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~  196 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVS  196 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC-
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccc
Confidence            48999999999999999999999 8877   566655

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.67  E-value=3.7e-05  Score=73.46  Aligned_cols=77  Identities=17%  Similarity=0.250  Sum_probs=53.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH-HHHHhCCCchh-------h-------------hhhhhchhhhhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY-VEKLMGGTSVA-------Q-------------IFKESGEAYFRE  152 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~-ie~~~~G~~i~-------~-------------~~~~~g~~~fr~  152 (287)
                      ...|+|+||+|||||||+..|+..++..+|+.|.+ +   +.|+++.       +             .........|.+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~Qv---Yr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~   78 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV---YKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFET   78 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTT---BSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccce---ecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHH
Confidence            35789999999999999999999999889988874 1   1333331       1             112234556766


Q ss_pred             hHHHHHHHhhcCCCeEEecCC
Q 023118          153 YESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus       153 ~e~~~l~~l~~~~~~via~gg  173 (287)
                      .-...++++......+|-+||
T Consensus        79 ~a~~~i~~i~~~g~~pilVGG   99 (409)
T 3eph_A           79 ECMNAIEDIHRRGKIPIVVGG   99 (409)
T ss_dssp             HHHHHHHHHHTTTCEEEEECS
T ss_pred             HHHHHHHHHHhcCCCEEEECC
Confidence            666677777666666666766

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.65  E-value=1.9e-05  Score=82.81  Aligned_cols=47  Identities=11%  Similarity=-0.060  Sum_probs=39.2

Q ss_pred             cEEEcceEEEc-----CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHH
Q 023118           65 DVESGTFCDSL-----DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEIL  114 (287)
Q Consensus        65 ~l~~~~l~~~~-----~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~L  114 (287)
                      .+.+++..+.+     ++..++++++|.+.+   |++++|+|||||||||++|.+
T Consensus       631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~---g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          631 RIILKASRHACVEVQDEIAFIPNDVYFEKDK---QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             EEEEEEECCTTTTTC--CCCCCEEEEEETTT---BCEEEEECCTTSSHHHHHHHH
T ss_pred             ceEeecCccchhhhcCCceeecccceeecCC---CeEEEEECCCCCCHHHHHHHH
Confidence            46666666555     234688999999999   999999999999999999999

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.65  E-value=6.2e-06  Score=76.04  Aligned_cols=38  Identities=16%  Similarity=0.233  Sum_probs=25.4

Q ss_pred             eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +++.+   |++++|+||||+|||||++.|++.+.+   ++|.+.
T Consensus       168 ~~~~~---G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~  205 (307)
T 1t9h_A          168 IPHFQ---DKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS  205 (307)
T ss_dssp             GGGGT---TSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred             HhhcC---CCEEEEECCCCCCHHHHHHHhcccccc---ccccee
Confidence            44555   999999999999999999999998887   455554

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.65  E-value=1.1e-05  Score=84.32  Aligned_cols=43  Identities=23%  Similarity=0.241  Sum_probs=38.4

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHH
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEIL  114 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~L  114 (287)
                      ..+++++++.     ..|+++||+|++   |++++|+|+||||||||++.|
T Consensus       628 ~~L~v~~l~~-----~~Lk~Vsl~I~~---Geiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          628 RWLEVVGARE-----HNLKNVSVKIPL---GTFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             CEEEEEEECS-----SSCCSEEEEEES---SSEEECCBCTTSSHHHHHTTT
T ss_pred             eEEEEecCcc-----cccccceEEEcC---CCEEEEEcCCCCCHHHHHHHH
Confidence            4688888863     369999999999   999999999999999999985

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.61  E-value=1.9e-05  Score=75.22  Aligned_cols=51  Identities=12%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             cEEEcceEEEcC-Ceeecc--------------ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           65 DVESGTFCDSLD-GKWLLK--------------AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~--------------~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -+.++|+++.|. ++..++              |+.+.+.+   |+.++|+||+|+|||||++.|++..
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~r---GQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR---GQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBT---TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecC---CcEEEEecCCCCChhHHHHHHHHHH
Confidence            478999999996 456788              89999999   9999999999999999999998865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.61  E-value=5.1e-06  Score=70.14  Aligned_cols=35  Identities=26%  Similarity=0.092  Sum_probs=27.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      +.++|+|+||||||||+++|++.+.+.-+..|.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~   37 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVK   37 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE
Confidence            57999999999999999999999876311244443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.59  E-value=3.2e-06  Score=78.55  Aligned_cols=51  Identities=27%  Similarity=0.105  Sum_probs=44.0

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +++.++..+.|+...+++++++.+.+   +..|+|+|++|+||||+++.|++.+
T Consensus        30 ~ie~~~~~~~~~~~~~~~~l~~~~~~---~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           30 LVESRHPRHQALSTQLLDAIMPYCGN---TLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHGGGCSC---SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HhhcCCchhhhHHHHHHHhCCcccCC---CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35666777777777789999999988   9999999999999999999998765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.58  E-value=2.6e-05  Score=64.00  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |+.++|+||+|+|||||++++++.+.+
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999987643

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.57  E-value=3.2e-05  Score=72.68  Aligned_cols=36  Identities=28%  Similarity=0.193  Sum_probs=31.8

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..++++++++.+   | +++|+|||||||||++++|+...
T Consensus        15 ~~~~~~~~~~~~---g-~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           15 RNLAPGTLNFPE---G-VTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             TTCCSEEEECCS---E-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cceeeeEEEEcC---C-eEEEECCCCCChhHHHHHHHHhc
Confidence            357889999998   8 99999999999999999998643

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.57  E-value=9.1e-06  Score=79.67  Aligned_cols=54  Identities=22%  Similarity=0.341  Sum_probs=44.3

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      .+++++...|....+++++++.+++   |  +.|+||+|+|||||++.|++.++.+|+.
T Consensus        41 ~~l~~lv~~l~~~~~~~~lg~~ip~---G--vLL~GppGtGKTtLaraIa~~~~~~~i~   94 (499)
T 2dhr_A           41 EELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPFIT   94 (499)
T ss_dssp             HHHHHHHHHHHCGGGTTTTSCCCCS---E--EEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHhhchhhhhhccCCCCc---e--EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4455665556666688999999987   6  9999999999999999999998877743

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.52  E-value=1.8e-05  Score=78.98  Aligned_cols=51  Identities=14%  Similarity=0.285  Sum_probs=44.8

Q ss_pred             EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      -+++..-||...+++++++.+.+   |+.++|+||+||||||+++.|++.+.+.
T Consensus        37 p~~l~~i~G~~~~l~~l~~~i~~---g~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           37 EKLIDQVIGQEHAVEVIKTAANQ---KRHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             SSHHHHCCSCHHHHHHHHHHHHT---TCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             ccccceEECchhhHhhccccccC---CCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            34455567878899999999999   9999999999999999999999999775

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.52  E-value=4.4e-05  Score=70.12  Aligned_cols=45  Identities=18%  Similarity=0.165  Sum_probs=34.8

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |+++|+ +.|++     ++++++.+   | ..+|+|+||||||||+.+|...++.
T Consensus         6 L~i~nf-r~~~~-----~~~l~~~~---g-~~~i~G~NGsGKS~ll~ai~~llg~   50 (322)
T 1e69_A            6 LYLKGF-KSFGR-----PSLIGFSD---R-VTAIVGPNGSGKSNIIDAIKWVFGE   50 (322)
T ss_dssp             EEEESB-TTBCS-----CEEEECCS---S-EEEEECCTTTCSTHHHHHHHHTSCC
T ss_pred             EEEeCc-eeecC-----CeEEecCC---C-cEEEECCCCCcHHHHHHHHHHHhCC
Confidence            566663 45532     45667777   7 9999999999999999999987754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.52  E-value=3.2e-05  Score=68.01  Aligned_cols=30  Identities=23%  Similarity=0.446  Sum_probs=26.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..+.|+||+|+||||+++.|++.++.+|+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~   75 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence            359999999999999999999999877643

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.51  E-value=2.1e-05  Score=71.73  Aligned_cols=48  Identities=27%  Similarity=0.294  Sum_probs=39.8

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +..+++++.|+...  ++++++  +   |++++|+|++|+||||++..||+.+.+
T Consensus        77 ~~~~~l~~~~~~~~--~~i~~~--~---~~~i~i~g~~G~GKTT~~~~la~~~~~  124 (295)
T 1ls1_A           77 TVYEALKEALGGEA--RLPVLK--D---RNLWFLVGLQGSGKTTTAAKLALYYKG  124 (295)
T ss_dssp             HHHHHHHHHTTSSC--CCCCCC--S---SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCC--ceeecC--C---CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45677888887543  678887  6   899999999999999999999998754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.49  E-value=4.6e-05  Score=70.41  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=32.6

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++++|.+.+   +++|+|+|++|+||||++..||+.+.+
T Consensus        95 ~~~l~~~~~~---~~vI~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A           95 KYRIDFKENR---LNIFMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             -CCCCCCTTS---CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             ccCccccCCC---CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3678888888   999999999999999999999988754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.45  E-value=8.4e-05  Score=67.42  Aligned_cols=44  Identities=14%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc--cchhHHHHHh
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA--DSDKYVEKLM  133 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi--d~d~~ie~~~  133 (287)
                      .+.+   +..+.|.||+||||||+++.|++.++.+|+  ++..+.....
T Consensus        45 ~~~~---~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~   90 (301)
T 3cf0_A           45 GMTP---SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF   90 (301)
T ss_dssp             CCCC---CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred             CCCC---CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence            3556   789999999999999999999999998885  4445554433

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.40  E-value=9.2e-05  Score=63.81  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=25.3

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -+++   |+.++|+||+|||||||++.|++.
T Consensus        20 gi~~---G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIET---GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEET---TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcC---CeEEEEECCCCCcHHHHHHHHHHH
Confidence            3667   999999999999999999999983

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.39  E-value=7.2e-05  Score=63.47  Aligned_cols=34  Identities=26%  Similarity=0.127  Sum_probs=28.4

Q ss_pred             eccccce-eeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           80 LLKAKGR-EVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        80 il~~~s~-~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+++.. .+++   |+.++|+||+||||||+++.|++
T Consensus         8 ~LD~~l~Ggi~~---G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            8 SLDSLLGGGFAP---GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHTTSSBCT---TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcC---CEEEEEECCCCCCHHHHHHHHHH
Confidence            3444443 5777   99999999999999999999987

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.37  E-value=6.8e-05  Score=70.32  Aligned_cols=34  Identities=35%  Similarity=0.327  Sum_probs=28.4

Q ss_pred             eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .++++++++.+   | ..+|+||||||||||+.+|+..
T Consensus        13 ~~~~~~i~~~~---g-~~~i~G~NGaGKTTll~ai~~a   46 (365)
T 3qf7_A           13 GLKNVDIEFQS---G-ITVVEGPNGAGKSSLFEAISFA   46 (365)
T ss_dssp             TEEEEEEECCS---E-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccceEEecCC---C-eEEEECCCCCCHHHHHHHHHHH
Confidence            34567788887   7 7889999999999999999854

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.37  E-value=2e-05  Score=72.53  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=40.3

Q ss_pred             cceEEEcCCeeeccccceeeccCCCCcE--EEEEcCCCCCHHHHHHHHHhccCC
Q 023118           69 GTFCDSLDGKWLLKAKGREVASCLDGQC--LFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~--i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++...+|...+++.++..+..   |+.  +.|.||+|+||||+++.+++.+.+
T Consensus        22 ~~~~~~~g~~~~~~~L~~~i~~---g~~~~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           22 ETLDEVYGQNEVITTVRKFVDE---GKLPHLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHT---TCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CcHHHhcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3444556667788888888888   876  999999999999999999998744

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.36  E-value=5.1e-05  Score=72.69  Aligned_cols=35  Identities=20%  Similarity=0.124  Sum_probs=32.2

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -++++|+++.   +..++|+|++|||||||++.|++..
T Consensus       147 ~~~i~lelk~---g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELML---IADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECC---SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcC---CCEEEEECCCCCcHHHHHHHHHcCC
Confidence            3688999999   9999999999999999999999873

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.33  E-value=8.9e-05  Score=77.51  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=29.0

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~  111 (287)
                      ...|+++||++++   |+.++|+|+||||||||+
T Consensus       597 ~~~Lk~Vsl~I~~---Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          597 HNNLKNIDVEIPL---GVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             STTCCSEEEEEES---SSEEEEECSTTSSHHHHH
T ss_pred             cccccccceEEcC---CcEEEEEccCCCChhhhH
Confidence            3479999999999   999999999999999997

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.33  E-value=9.8e-05  Score=67.86  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=29.6

Q ss_pred             ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           83 AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        83 ~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++...+   +++|+|+|++||||||++..||+.+.+
T Consensus        96 ~~~~~~~~---~~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A           96 KLNVPPEP---PFVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             CCCCCSSS---CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcccCCC---CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            34555666   899999999999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.31  E-value=0.0001  Score=67.11  Aligned_cols=27  Identities=26%  Similarity=0.301  Sum_probs=25.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +.+|+|+|++|||||||++.|++.+++
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            789999999999999999999998864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.22  E-value=0.00018  Score=64.31  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=25.2

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +.+   |+.++|+||+|||||||++.+++.+
T Consensus        27 l~~---G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           27 MVA---GTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             EET---TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccC---CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567   9999999999999999999998744

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.22  E-value=0.00014  Score=67.84  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             ecccc-ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           80 LLKAK-GREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        80 il~~~-s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+.+ +..+++   |+++.|+||+|||||||++.|++..
T Consensus       119 ~LD~lL~ggi~~---G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          119 SLDKLLGGGIET---QAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HHHHHHTSSEES---SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCC---CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34444 578888   9999999999999999999999987

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.20  E-value=0.00014  Score=66.82  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +.++|+|++||||||+++.|++..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            578999999999999999999875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.14  E-value=0.00026  Score=59.25  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .++|+|++|||||||++.+++...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            6899999999999999999987654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.14  E-value=0.00016  Score=70.48  Aligned_cols=45  Identities=24%  Similarity=0.422  Sum_probs=35.9

Q ss_pred             cCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           75 LDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        75 ~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      +.....++++++.+++   |  +.|+||+|+||||+++.|++.++.+|+.
T Consensus        35 l~~~~~~~~~g~~~p~---g--vLL~GppGtGKT~Laraia~~~~~~f~~   79 (476)
T 2ce7_A           35 LKDPSKFNRIGARMPK---G--ILLVGPPGTGKTLLARAVAGEANVPFFH   79 (476)
T ss_dssp             HHCTHHHHTTTCCCCS---E--EEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             hhChHHHhhcCCCCCC---e--EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            3333456677777765   4  8999999999999999999999988854

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.13  E-value=0.0003  Score=67.94  Aligned_cols=49  Identities=24%  Similarity=0.416  Sum_probs=35.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccch--hHHHHHhCCCchhhhh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSD--KYVEKLMGGTSVAQIF  142 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d--~~ie~~~~G~~i~~~~  142 (287)
                      ...|.|+||+|+||||+++.||+.++++|+..+  .+.+.-+-|.++..++
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~l  100 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII  100 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHH
Confidence            356999999999999999999999999997655  3433222365554443

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.10  E-value=0.00027  Score=63.14  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA  123 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi  123 (287)
                      +..+.|.||+|+||||+++.+++.++.+|+
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~   83 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFL   83 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            678999999999999999999999988774

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.10  E-value=0.00027  Score=57.77  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ...+|+|||||||||++..|.-.+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999987544

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.09  E-value=0.00029  Score=62.55  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      +..+.|.||+|+||||+++.++..++.+|+.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            6789999999999999999999999988754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.04  E-value=0.00032  Score=58.81  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|+|++|+|||||++.|++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.03  E-value=0.00035  Score=60.89  Aligned_cols=31  Identities=23%  Similarity=0.365  Sum_probs=27.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ...+.|.||+|+||||+++.++..++.+|+.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            5679999999999999999999999887753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.03  E-value=0.00029  Score=64.22  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      |++++|+|++|+||||++..||+.+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.02  E-value=0.00041  Score=60.29  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=34.0

Q ss_pred             eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      .++..-+.+.    |..|+|+||+|+|||||+..|+.... .++..|.+
T Consensus        24 ~lHa~~v~~~----g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~   67 (205)
T 2qmh_A           24 SMHGVLVDIY----GLGVLITGDSGVGKSETALELVQRGH-RLIADDRV   67 (205)
T ss_dssp             CEESEEEEET----TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred             eeeEEEEEEC----CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence            3444444443    78899999999999999999998866 77777754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.97  E-value=0.00029  Score=68.95  Aligned_cols=49  Identities=14%  Similarity=0.140  Sum_probs=37.4

Q ss_pred             EEEcceEEEcCCeeeccc-cceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           66 VESGTFCDSLDGKWLLKA-KGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~-~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ++.++++..|++   |+. ++..+.+   |++++|+|+||||||||++.+++.+.+
T Consensus       258 ~~~~~l~~g~~~---ld~vL~g~i~~---G~i~~i~G~~GsGKSTLl~~l~g~~~~  307 (525)
T 1tf7_A          258 SSNVRVSSGVVR---LDEMCGGGFFK---DSIILATGATGTGKTLLVSRFVENACA  307 (525)
T ss_dssp             CCCCEECCSCHH---HHHHTTSSEES---SCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             cccceeecChHH---HHHHhCCCCCC---CcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            456666655532   222 2448888   999999999999999999999988755

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.97  E-value=0.00018  Score=69.06  Aligned_cols=46  Identities=28%  Similarity=0.320  Sum_probs=37.5

Q ss_pred             EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+++++.|+...  +++++.  +   +.+|+++|++||||||++..||+.+..
T Consensus        79 ~~~L~~~~~~~~--~~i~l~--~---~~vi~i~G~~GsGKTT~~~~LA~~l~~  124 (425)
T 2ffh_A           79 YEALKEALGGEA--RLPVLK--D---RNLWFLVGLQGSGKTTTAAKLALYYKG  124 (425)
T ss_dssp             HHHHHHHTTSSC--CCCCCC--S---SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCc--ccccCC--C---CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            456777787543  677777  6   899999999999999999999988754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.96  E-value=0.00035  Score=64.76  Aligned_cols=33  Identities=39%  Similarity=0.602  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSD  126 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d  126 (287)
                      +..+.|.||+|+|||++++.|+..++.+|+..+
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~   83 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMAD   83 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence            568999999999999999999999999987654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.93  E-value=0.00049  Score=56.59  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      |..|+|+|++|+|||||++.|++..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999999754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.93  E-value=0.00021  Score=66.35  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             EcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           68 SGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        68 ~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ++++.+.|+.   ..+|++++++++      .|+|+|++|||||||++.|.|.
T Consensus        11 l~~~~~~~~~~~~~~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           11 IQRACTALGDHGDSSALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             TTTTTTSCSSCCSSCCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhCccccccccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence            4455555542   357888888887      4999999999999999999984

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.91  E-value=0.00049  Score=62.22  Aligned_cols=30  Identities=20%  Similarity=0.115  Sum_probs=26.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..+.|.||+|+|||++++.||..++.+|+.
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~   66 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKMGINPIM   66 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            467788999999999999999999988854

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.88  E-value=0.00056  Score=57.07  Aligned_cols=35  Identities=26%  Similarity=0.302  Sum_probs=20.7

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .+++++++..++    -.|+|+|++|+|||||++.+.+.
T Consensus        12 ~~l~~~~~~~~~----~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           12 DVLASLGLWNKH----GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ----------------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHHhhccCCc----cEEEEECCCCCCHHHHHHHHhcC
Confidence            367888888765    47999999999999999999863

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.85  E-value=0.00023  Score=62.70  Aligned_cols=29  Identities=28%  Similarity=0.451  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      .+.|.||+|+||||+++.|+..++.+|+.
T Consensus        46 ~vll~G~~GtGKT~la~~la~~~~~~~~~   74 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFS   74 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            48899999999999999999998887754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.0006  Score=65.51  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS  125 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~  125 (287)
                      .+-+.|.||+|||||++++.+|+.++.+|+..
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            45699999999999999999999999998543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.0006  Score=65.68  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..-|.|.||+|||||++++.||+.++.+|+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~  245 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIF  245 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            5679999999999999999999999999854

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.00061  Score=65.60  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..-|.|.||+|||||++++.+|+.++.+|+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            4679999999999999999999999999854

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.79  E-value=0.00077  Score=57.93  Aligned_cols=33  Identities=18%  Similarity=0.230  Sum_probs=25.9

Q ss_pred             cccc-ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           81 LKAK-GREVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        81 l~~~-s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      |+.+ .--+.+   |+.++|+|++|+||||++..++.
T Consensus        12 LD~~l~gGl~~---G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           12 VDEILHGGIPE---RNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             HHHHTTTSEET---TCEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHcCCCCCC---CcEEEEECCCCCCHHHHHHHHHH
Confidence            4444 445777   99999999999999999766554

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.77  E-value=0.00064  Score=63.20  Aligned_cols=33  Identities=39%  Similarity=0.558  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSD  126 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d  126 (287)
                      ...+.|.||+|+||||+++.|+..++.+|+..+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            457999999999999999999999998886543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.75  E-value=0.00079  Score=54.67  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..|+|+|++|+|||||++.|.+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            469999999999999999998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.74  E-value=0.00075  Score=57.40  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +..+.|.||+|+||||+++.++..+.
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999998764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.00065  Score=64.83  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..-+.|.||+|||||++++.+|+.++.+|+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            4568999999999999999999999999954

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.73  E-value=0.001  Score=53.50  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..+.|.|++|+|||++++.|+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            6789999999999999999999875

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.72  E-value=0.00073  Score=56.95  Aligned_cols=26  Identities=35%  Similarity=0.255  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      -..++|+|++|||||||++.|.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            35799999999999999999988653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.72  E-value=0.00075  Score=64.10  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      |..++|+|+||+|||||+++|++.
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999999983

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.71  E-value=0.00084  Score=54.55  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..+.|.||+|+||||+++.++..+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999999876

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.69  E-value=0.00087  Score=59.29  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ...+.|.||+|+||||+++.++..++.+|+.
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~   94 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIK   94 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            4679999999999999999999999888754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.68  E-value=0.00084  Score=59.72  Aligned_cols=30  Identities=23%  Similarity=0.460  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA  123 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi  123 (287)
                      +..+.|.||+|+||||+++.++..++.+|+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            467999999999999999999999987764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.67  E-value=0.00046  Score=58.06  Aligned_cols=39  Identities=28%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             EcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           74 SLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        74 ~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|++ ..+++++++..++    -.|+|+|++|+|||||++.+.+
T Consensus         8 ~~~~~~~~l~~~~~~~~~----~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            8 IYSGFSSVLQFLGLYKKT----GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             -----CHHHHHHTCTTCC----EEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhhccCCC----cEEEEECCCCCCHHHHHHHHhc
Confidence            4443 3578888888776    4689999999999999999865

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.66  E-value=0.00098  Score=63.43  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.8

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      -+.+   |+++.|+||+|||||||++.|+
T Consensus       174 GI~~---Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          174 GVET---GSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEET---TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCC---CcEEEEEcCCCCChHHHHHHHH
Confidence            4666   9999999999999999999654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.66  E-value=0.00093  Score=60.94  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ...+.|.||+|+|||++++.++..++.+|+.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~   81 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS   81 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence            4679999999999999999999999988854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.66  E-value=0.00073  Score=55.00  Aligned_cols=25  Identities=32%  Similarity=0.329  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..+.|.||+|+||||+++.++..+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999999876

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.65  E-value=0.0011  Score=56.74  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ...+|+|||||||||++.+|.-.++
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            5889999999999999999875543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.65  E-value=0.00081  Score=69.72  Aligned_cols=29  Identities=28%  Similarity=0.437  Sum_probs=27.9

Q ss_pred             eccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118           80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~  111 (287)
                      =|||++++|+.   ++.++|.|+||||||||+
T Consensus        25 NLkni~v~iP~---~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           25 NLKDISVKVPR---DALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             TCCSEEEEEES---SSEEEEESSTTSSHHHHH
T ss_pred             CCCCeeEEecC---CCEEEEECCCCCCHHHHH
Confidence            59999999999   999999999999999997

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.65  E-value=0.00036  Score=68.16  Aligned_cols=38  Identities=21%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .++++++++.+   | ..+|+|+||||||||+.+|...++-.
T Consensus        50 ~~~~~~l~f~~---g-~n~i~G~NGaGKS~lleAl~~llg~r   87 (517)
T 4ad8_A           50 TITQLELELGG---G-FCAFTGETGAGKSIIVDALGLLLGGR   87 (517)
T ss_dssp             TBSCEEEECCC---S-EEEEEESHHHHHHHHTHHHHHHTCSC
T ss_pred             ceeeEEEecCC---C-eEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            56778888888   7 99999999999999999998887654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.64  E-value=0.00025  Score=63.50  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+.|+||+|+||||+++.|++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence            57999999999999999999998743

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.64  E-value=0.00091  Score=55.28  Aligned_cols=23  Identities=43%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.64  E-value=0.0009  Score=62.26  Aligned_cols=25  Identities=32%  Similarity=0.312  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..|+|+|++|+|||||++.|++.+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.63  E-value=0.0011  Score=60.86  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc-CCccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL-DYTFA  123 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l-~~~fi  123 (287)
                      ...+.|.||+|+|||++++.+|..+ +.+|+
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            5789999999999999999999988 66664

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.63  E-value=0.00038  Score=63.55  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=34.8

Q ss_pred             EcceEEEcCCeeeccc-cceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           68 SGTFCDSLDGKWLLKA-KGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        68 ~~~l~~~~~~~~il~~-~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+++.+.|+...  ++ +++.. +   +.+++++|++|+||||++..||+.+
T Consensus        77 ~~~l~~~~~~~~--~~~i~~~~-~---~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           77 YDELSNLFGGDK--EPKVIPDK-I---PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             HHHHHHHTTCSC--CCCCSCSS-S---SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             HHHHHHHhcccc--ccccccCC-C---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456666776543  45 66664 3   7899999999999999999999776

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.63  E-value=0.00081  Score=61.39  Aligned_cols=26  Identities=31%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHh-ccCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSD-ALDY  120 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~-~l~~  120 (287)
                      ..+.|.||+|+||||+++.|++ .+++
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~   63 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESIFGP   63 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            3499999999999999999999 4555

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.61  E-value=0.00092  Score=60.66  Aligned_cols=36  Identities=22%  Similarity=0.477  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc---CCcc--ccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL---DYTF--ADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l---~~~f--id~d~~i  129 (287)
                      +..+.|.||+|+||||+++.++..+   +.+|  +++..+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            5689999999999999999999877   4444  5555543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.60  E-value=0.0012  Score=54.19  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.|++.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999999874

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.55  E-value=0.00098  Score=69.68  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=28.2

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~  111 (287)
                      .=|||++++|+.   ++.++|.|+||||||||+
T Consensus        12 hNLkni~~~ip~---~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           12 HNLKNITVRIPK---NRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             TTCCSBCCEEET---TSEEEEEESTTSSSHHHH
T ss_pred             cccCcceeccCC---CcEEEEECCCCCcHHHHH
Confidence            358999999999   999999999999999997

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.54  E-value=0.0003  Score=64.02  Aligned_cols=41  Identities=22%  Similarity=0.355  Sum_probs=32.1

Q ss_pred             eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118           80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA  123 (287)
Q Consensus        80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi  123 (287)
                      +++.+...+..   |..+.|.||+|+|||++++.++..++.+|+
T Consensus        35 ~~~~l~~~l~~---~~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           35 MINRLLIGICT---GGHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             HHHHHHHHHHH---TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHc---CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            33444444445   778999999999999999999999887764

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.001  Score=64.56  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      -.-|.|.||+|||||++++.||+.++.+|+.
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            5679999999999999999999999999854

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.52  E-value=0.0014  Score=60.75  Aligned_cols=31  Identities=29%  Similarity=0.487  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ...+.|.||+|+||||+++.|+..++.+|+.
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            5689999999999999999999999988753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.52  E-value=0.0011  Score=60.37  Aligned_cols=25  Identities=32%  Similarity=0.596  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..++|.||+|+||||+++.+++.+
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999877

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.52  E-value=0.0011  Score=69.48  Aligned_cols=31  Identities=32%  Similarity=0.537  Sum_probs=28.6

Q ss_pred             eeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118           78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~  111 (287)
                      ..=|||++++|+.   ++.++|.|+||||||||+
T Consensus        31 ~hNLkni~v~iP~---~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           31 AHNLKNIDVEIPR---GKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSSCCSEEEEEET---TSEEEEEESTTSSHHHHH
T ss_pred             cccCCceeeeccC---CcEEEEECCCCCCHHHHH
Confidence            3459999999999   999999999999999986

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.51  E-value=0.0014  Score=60.47  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ...+|+|||||||||++..|.-.
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~~~   46 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAILVG   46 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999987543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.51  E-value=0.0012  Score=61.44  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=27.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ...+.|.||+|+|||++++.++..++.+|+.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~  114 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS  114 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            4569999999999999999999999988854

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0013  Score=63.17  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..-|.|.||+|||||++++.||+.++.+|+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            4579999999999999999999999999854

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.49  E-value=0.0063  Score=52.66  Aligned_cols=108  Identities=18%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC---CccccchhHHHH-H--hCCCchhhhhhh-hchhhhhhhHHHH---------
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD---YTFADSDKYVEK-L--MGGTSVAQIFKE-SGEAYFREYESKA---------  157 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~---~~fid~d~~ie~-~--~~G~~i~~~~~~-~g~~~fr~~e~~~---------  157 (287)
                      -.+|+|+|++||||+|+++.+...++   .+.+.-++.+.+ .  ..|.++.+++.. .-.+.+|..-..+         
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~   90 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP   90 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence            46899999999999999999988664   444566655542 1  135554443210 0001122221111         


Q ss_pred             ---HHHhhc--CCCeEEecCCceEeccccHHhhcC--C---cEEEEecCHHHHHHHH
Q 023118          158 ---LQKLSL--VPQQVVATGGGAVVRPLNWRFMRQ--G---ITVFLNVPLDALARRI  204 (287)
Q Consensus       158 ---l~~l~~--~~~~via~ggG~v~~~~~~~~L~~--g---~~I~L~~~~e~l~~Ri  204 (287)
                         ++....  ....++.+|   +-++...+++++  |   ++|.+.++++++.+|.
T Consensus        91 ~~~~~~~~~~~~~~~vII~d---vR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           91 GFFCRKIVEGISQPIWLVSD---TRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             TTTHHHHSBTCCCSEEEECC---CCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred             hHHHHHHHHhcCCCcEEEeC---CCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence               111111  112344444   223334455553  2   3589999999999994

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.48  E-value=0.00049  Score=57.90  Aligned_cols=26  Identities=27%  Similarity=0.603  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ..+.|.||+|+||||+++.++..+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            37999999999999999999987754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.48  E-value=0.0014  Score=55.03  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..+.|.||+|+||||+++.|+..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999866

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.48  E-value=0.0013  Score=55.29  Aligned_cols=25  Identities=36%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ..++|+|++||||||++..|+..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4799999999999999999988764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.47  E-value=0.0012  Score=60.01  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +..|+|+|++|+|||||++.|.+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            568999999999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.43  E-value=0.0017  Score=59.06  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADS  125 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~  125 (287)
                      ..+.|.||+|+||||+++.++..++.+|+..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            5799999999999999999999999887543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.42  E-value=0.00034  Score=65.41  Aligned_cols=44  Identities=25%  Similarity=0.175  Sum_probs=33.3

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .+.+.+++..|+.+.+++++++.         |+|+|++|+|||||++.|.+.
T Consensus        17 ~v~~~~l~~~~~~k~~~~~~~~~---------I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           17 YVGFANLPNQVHRKSVKKGFEFT---------LMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             ----CCHHHHHHTHHHHHCCEEC---------EEECCCTTSCHHHHHHHHTTC
T ss_pred             eEEeccchHHhCCeeecCCCCEE---------EEEEcCCCCCHHHHHHHHhCC
Confidence            57888888888877777766553         589999999999999998765

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.41  E-value=0.0016  Score=58.27  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..+.|.||+|+||||+++.++..+
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999999887

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.29  E-value=0.0024  Score=59.80  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      +..+.|.||+|+|||++++.|+..++.+|+.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~  178 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN  178 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence            5789999999999999999999999988854

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.28  E-value=0.00094  Score=60.63  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=28.6

Q ss_pred             eeeccccceeeccCCCC--cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           78 KWLLKAKGREVASCLDG--QCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        78 ~~il~~~s~~i~~~l~g--~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ..+++.+...+..   |  ..+.|.||+|+||||+++.+++.+.
T Consensus        43 ~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           43 DHAVTVLKKTLKS---ANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CTTHHHHHHHTTC---TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3344444444444   4  4599999999999999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.27  E-value=0.0022  Score=58.74  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .++|.||+|+||||+++.+++.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            899999999999999999998873

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.24  E-value=0.0022  Score=61.68  Aligned_cols=30  Identities=27%  Similarity=0.414  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADS  125 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~  125 (287)
                      .+.|.||+|+||||+++.|+..++.+|+..
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            599999999999999999999999887553

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.23  E-value=0.0025  Score=55.21  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      -.|+|+|++|+|||||++.|.+...+
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~~   55 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKVF   55 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCcC
Confidence            46999999999999999999876543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.22  E-value=0.0014  Score=52.73  Aligned_cols=26  Identities=27%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +..+.|.|++|+|||++++.|+....
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhCC
Confidence            67899999999999999999988766

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.21  E-value=0.0025  Score=61.15  Aligned_cols=31  Identities=29%  Similarity=0.567  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC--Ccccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD--YTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid  124 (287)
                      +..+.|.||+|+|||++++.+|..++  .+|+.
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~   95 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP   95 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence            57899999999999999999999998  66643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.20  E-value=0.0029  Score=50.41  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.19  E-value=0.0038  Score=53.04  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      |.-+.|.|+||+||||++..|.. .|+.++.-|.+.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~   50 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID-RGHQLVCDDVID   50 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEE
Confidence            88999999999999999998877 477766666543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.16  E-value=0.0017  Score=59.28  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..+.|.||+|+||||+++.++..+
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999877

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.16  E-value=0.0031  Score=49.83  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+++|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            68999999999999999998653

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.14  E-value=0.0031  Score=59.12  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +++   |+.+.|.||+|||||||+..++...
T Consensus        58 i~~---G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           58 YPR---GRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             EET---TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccC---CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            566   9999999999999999999998764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.12  E-value=0.0031  Score=60.41  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc-CCccc--cchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL-DYTFA--DSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l-~~~fi--d~d~~i  129 (287)
                      ...+.|.||+|+|||++++.++..+ +.+|+  ++..++
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~  205 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV  205 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence            5689999999999999999999988 77763  444443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0032  Score=51.89  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|++|+|||||++.|.+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.12  E-value=0.0028  Score=58.10  Aligned_cols=27  Identities=30%  Similarity=0.554  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +..+.|.||+|+||||+++.++..++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            578999999999999999999998874

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.11  E-value=0.0033  Score=49.76  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999988754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.11  E-value=0.0034  Score=49.73  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.09  E-value=0.0035  Score=49.70  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.08  E-value=0.0035  Score=49.98  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998863

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.08  E-value=0.0045  Score=57.07  Aligned_cols=47  Identities=19%  Similarity=0.173  Sum_probs=36.2

Q ss_pred             CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      ....++...+.+ .   |.-++|+|+||+||||++..|.+. |..++.-|.+
T Consensus       131 ~~~~~H~~~v~~-~---g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~  177 (314)
T 1ko7_A          131 RTTSLHGVLVDV-Y---GVGVLITGDSGIGKSETALELIKR-GHRLVADDNV  177 (314)
T ss_dssp             EEEEEESEEEEE-T---TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred             cceeeeEEEEEE-C---CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeE
Confidence            345667766666 3   889999999999999999999875 7777655544

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.07  E-value=0.0034  Score=50.42  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            6999999999999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.06  E-value=0.0036  Score=64.63  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS  125 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~  125 (287)
                      -.-|.|.||+|||||+|++.+|+.++.+|+..
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v  269 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence            46799999999999999999999999998543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.05  E-value=0.0029  Score=50.50  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            6899999999999999988653

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.05  E-value=0.0023  Score=57.48  Aligned_cols=30  Identities=30%  Similarity=0.470  Sum_probs=26.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA  123 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi  123 (287)
                      ...+.|.||+|+||||+++.++..++.+|+
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            467999999999999999999998887763

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.04  E-value=0.0037  Score=50.02  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            58999999999999999997643

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.04  E-value=0.0036  Score=61.02  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=27.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ...+.|.||+|+||||+++.++..+++.|+.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            3689999999999999999999999888754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.04  E-value=0.0031  Score=52.36  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..+.|.||+|+||||+++.++..+
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            359999999999999999999865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.03  E-value=0.0039  Score=49.62  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999887643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.01  E-value=0.004  Score=49.68  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.+.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            369999999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.01  E-value=0.004  Score=49.70  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.00  E-value=0.004  Score=49.76  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999998864

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.99  E-value=0.0038  Score=52.66  Aligned_cols=23  Identities=35%  Similarity=0.296  Sum_probs=19.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      .|..+++.||+|+||||++-.++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHH
Confidence            38899999999999999984444

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.99  E-value=0.0041  Score=50.22  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999988764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.99  E-value=0.0012  Score=59.41  Aligned_cols=48  Identities=13%  Similarity=0.104  Sum_probs=34.3

Q ss_pred             CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118           76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSD  126 (287)
Q Consensus        76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d  126 (287)
                      |....++.+.-.+..   |..++|.||.|+|||||++.++...++-|++..
T Consensus        16 gR~~el~~L~~~l~~---~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           16 DREEESRKLEESLEN---YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             SCHHHHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             ChHHHHHHHHHHHhc---CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            433334433333444   679999999999999999999988776666654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.98  E-value=0.0031  Score=60.41  Aligned_cols=25  Identities=28%  Similarity=0.398  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..++|.||+|+|||||++.|++.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999999876

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.97  E-value=0.0043  Score=49.34  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.96  E-value=0.0042  Score=50.06  Aligned_cols=22  Identities=23%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.96  E-value=0.0043  Score=54.97  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|||||||++.|.+..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999998763

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.93  E-value=0.0041  Score=57.02  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..+.|.||+|+||||+++.++..+
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999999876

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.92  E-value=0.0045  Score=49.92  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999998875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.90  E-value=0.0052  Score=50.26  Aligned_cols=25  Identities=24%  Similarity=0.062  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .|+|+|++|+|||||++.|.+....
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhccc
Confidence            6999999999999999999876543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.90  E-value=0.0055  Score=49.45  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999998763

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.88  E-value=0.0046  Score=50.89  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.88  E-value=0.005  Score=48.98  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999998763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.87  E-value=0.0047  Score=50.52  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.|.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            479999999999999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.87  E-value=0.0039  Score=50.26  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.|.+.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.85  E-value=0.005  Score=50.12  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.|.+.
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.84  E-value=0.0051  Score=50.01  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++|+|||||++.|.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            68999999999999999998643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.84  E-value=0.0049  Score=60.04  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ...+.|.||+|+|||++++.|+..++.+|+.
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~  268 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            5679999999999999999999999988854

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.83  E-value=0.0052  Score=57.20  Aligned_cols=28  Identities=29%  Similarity=0.305  Sum_probs=24.1

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -+++   |+.+.|.|++|||||||+..++..
T Consensus        57 Gl~~---G~iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           57 GLPR---GRVIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             SEET---TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccC---CeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567   999999999999999998888753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.83  E-value=0.0049  Score=50.29  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999998875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.82  E-value=0.0055  Score=49.42  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.81  E-value=0.0053  Score=50.18  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.|.+.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.80  E-value=0.0056  Score=48.67  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.79  E-value=0.0049  Score=58.80  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.++|+|++|+|||||++.|.+..
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            489999999999999999999875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.79  E-value=0.0056  Score=48.92  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.78  E-value=0.0056  Score=49.22  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36999999999999999998753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.76  E-value=0.0057  Score=50.40  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6999999999999999998874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.75  E-value=0.006  Score=49.05  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.|.+..
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            369999999999999999998654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.74  E-value=0.006  Score=49.42  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.|.+..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            469999999999999999998643

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.74  E-value=0.0019  Score=63.12  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      |...+++.+-..+..   |..+.|.||+|+|||++++.|+..++
T Consensus        26 Gq~~~i~~l~~al~~---~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           26 ERSHAIRLCLLAALS---GESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             SCHHHHHHHHHHHHH---TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             HHHHHHHHHHHHHhc---CCeeEeecCchHHHHHHHHHHHHHHh
Confidence            333444444445555   88999999999999999999998774

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.74  E-value=0.0047  Score=50.86  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=95.73  E-value=0.0046  Score=62.35  Aligned_cols=32  Identities=38%  Similarity=0.290  Sum_probs=26.4

Q ss_pred             eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +.+.+   +.+|+|+|++|+|||||++.|.+..++
T Consensus         4 ~~~~~---~~~i~IiG~~gaGKTTLl~~L~~~~~~   35 (665)
T 2dy1_A            4 EGGAM---IRTVALVGHAGSGKTTLTEALLYKTGA   35 (665)
T ss_dssp             --CCC---EEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CccCC---CcEEEEECCCCChHHHHHHHHHHhcCC
Confidence            45566   899999999999999999999976654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.72  E-value=0.0057  Score=57.01  Aligned_cols=31  Identities=19%  Similarity=0.202  Sum_probs=24.5

Q ss_pred             cccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           82 KAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        82 ~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      ++..+++.+    ...+|+|+||+||||++..|.=
T Consensus        17 ~~~~i~f~~----gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           17 VNSRIKFEK----GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEECCS----EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEecCC----CeEEEECCCCCCHHHHHHHHHH
Confidence            344555554    5789999999999999999874

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.71  E-value=0.0063  Score=49.17  Aligned_cols=24  Identities=33%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.+.+..
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            368999999999999999987643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.71  E-value=0.0062  Score=49.95  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|.+|+|||||++.|.+.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36999999999999999999865

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.71  E-value=0.006  Score=51.36  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|++|+|||||++.|.+..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3479999999999999999998765

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.70  E-value=0.0043  Score=59.47  Aligned_cols=37  Identities=11%  Similarity=0.086  Sum_probs=31.2

Q ss_pred             eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..|+++..-+.+   |+.+.|.|++|+||||++..++...
T Consensus       191 ~~LD~~~gGl~~---G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          191 TELDRMTSGFQR---SDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             HHHHHHHSSBCT---TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCC---CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            356777667888   9999999999999999999888754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.68  E-value=0.0067  Score=53.17  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +..+.|.|++|+|||++++.|+....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            56899999999999999999998875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.67  E-value=0.0065  Score=49.46  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.+.+..
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            369999999999999999987643

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.66  E-value=0.006  Score=58.81  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ...+.|+||+|+||||+++.|+..+
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999886

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.65  E-value=0.0067  Score=49.04  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36899999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.63  E-value=0.0068  Score=49.74  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.61  E-value=0.0046  Score=59.40  Aligned_cols=25  Identities=40%  Similarity=0.466  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +.+|+++|++|+||||++..||..+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999665

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.59  E-value=0.0071  Score=50.01  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999766543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.59  E-value=0.0065  Score=54.45  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.|.+.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            46999999999999999999985

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.58  E-value=0.0069  Score=51.19  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -..|+|+|++|+|||||+..|++.+
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.57  E-value=0.0074  Score=49.97  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.+.+..
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            469999999999999999987643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.57  E-value=0.0064  Score=56.89  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|+|++|+|||||++.|++..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            39999999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.57  E-value=0.0076  Score=49.02  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.56  E-value=0.0077  Score=48.81  Aligned_cols=23  Identities=22%  Similarity=0.069  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999988753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.55  E-value=0.0075  Score=50.06  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.|.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            469999999999999999987653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.55  E-value=0.0044  Score=50.33  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .-.|+|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            56899999999999999988763

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.55  E-value=0.0077  Score=49.45  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++|+|||||++.|.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            69999999999999999988643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.54  E-value=0.0068  Score=55.23  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +..+.|.||+|+|||+|++.|+..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999987554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.53  E-value=0.0077  Score=49.83  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.+.+..
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            369999999999999999987643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.51  E-value=0.0079  Score=49.51  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            347999999999999999999763

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.51  E-value=0.0081  Score=49.38  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6999999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.47  E-value=0.0085  Score=48.62  Aligned_cols=22  Identities=14%  Similarity=0.312  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      -.|+|+|++|+|||||++.+.+
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3699999999999999999874

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.46  E-value=0.0077  Score=49.19  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|++|+|||||++.+.+..
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            5679999999999999999997644

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.45  E-value=0.008  Score=52.55  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|++|+|||||++.|.+.-
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC
Confidence            3579999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.0086  Score=49.40  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            69999999999999999988643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.44  E-value=0.0087  Score=49.67  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999998764

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.44  E-value=0.0067  Score=56.68  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +.+++|+|++||||||+++.|+..+
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.44  E-value=0.0086  Score=49.92  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|++|+|||||++.|.+..
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3479999999999999999998643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.43  E-value=0.0091  Score=48.28  Aligned_cols=24  Identities=21%  Similarity=-0.042  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            347999999999999999998764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.42  E-value=0.009  Score=55.19  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=24.6

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -+++   |+.+.|.|++||||||++..++..
T Consensus       118 Gl~~---G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIES---MAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCS---SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCC---CeEEEEECCCCCCHHHHHHHHHHH
Confidence            3556   999999999999999999998874

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.41  E-value=0.0071  Score=57.48  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +..++|+|++|+|||||++.|.+.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            788999999999999999999875

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.40  E-value=0.0092  Score=49.05  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            36999999999999999998754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.40  E-value=0.0093  Score=51.57  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      |+.++++||+||||||++..+.
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHH
Confidence            8999999999999999877653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.38  E-value=0.0096  Score=48.71  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.|.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.36  E-value=0.0094  Score=49.68  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.36  E-value=0.0097  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.35  E-value=0.0064  Score=50.85  Aligned_cols=24  Identities=29%  Similarity=0.399  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.+.+..
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~~   47 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGLQ   47 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcc
Confidence            368999999999999999987543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.35  E-value=0.0099  Score=48.98  Aligned_cols=23  Identities=39%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.34  E-value=0.0098  Score=49.26  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999998864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.34  E-value=0.0099  Score=48.77  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .-.|+|+|++|+|||||++.+.+
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999999885

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.33  E-value=0.007  Score=52.75  Aligned_cols=26  Identities=23%  Similarity=0.474  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ...+.|.||+|+||||++..|+..+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56799999999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.33  E-value=0.01  Score=49.53  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999998864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.33  E-value=0.01  Score=49.41  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhC
Confidence            457999999999999999999764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.32  E-value=0.0094  Score=52.78  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|||||||++.|.+.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            6999999999999999999886

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.31  E-value=0.01  Score=48.95  Aligned_cols=24  Identities=25%  Similarity=0.159  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|++|+|||||++.+.+..
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            469999999999999999988643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.30  E-value=0.0099  Score=50.39  Aligned_cols=25  Identities=40%  Similarity=0.460  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -..|+|+|++|+|||||+..++..+
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999988764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.29  E-value=0.0075  Score=48.81  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.29  E-value=0.0094  Score=48.72  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.29  E-value=0.011  Score=54.07  Aligned_cols=28  Identities=29%  Similarity=0.328  Sum_probs=24.7

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -+++   |+.+.|.|++|+||||++..++..
T Consensus       103 Gl~~---G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIET---RTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEET---TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCC---CcEEEEECCCCCCHhHHHHHHHHH
Confidence            4566   999999999999999999988864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.28  E-value=0.011  Score=49.37  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.27  E-value=0.01  Score=49.58  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6999999999999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.26  E-value=0.01  Score=50.00  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999988764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.23  E-value=0.011  Score=48.76  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            36999999999999999888764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.21  E-value=0.011  Score=49.56  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            47999999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.21  E-value=0.011  Score=49.93  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999999874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.20  E-value=0.0094  Score=49.03  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ...|+|+|++|+|||||++.+.+.
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999988753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.20  E-value=0.011  Score=49.45  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|++|+|||||++.+.+..
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999988643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.20  E-value=0.0093  Score=49.39  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.18  E-value=0.012  Score=48.90  Aligned_cols=25  Identities=20%  Similarity=0.513  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      -.|+|+|.+|+|||||++.+.+...
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4799999999999999998877543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.17  E-value=0.008  Score=49.46  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|++|+|||||++.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3479999999999999999887654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.15  E-value=0.012  Score=48.75  Aligned_cols=24  Identities=29%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999988753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.15  E-value=0.012  Score=49.51  Aligned_cols=22  Identities=36%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.10  E-value=0.011  Score=50.45  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.08  E-value=0.013  Score=48.89  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            69999999999999999998643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.08  E-value=0.012  Score=52.01  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|.+|+|||||++.|.+.
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            36999999999999999999874

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.08  E-value=0.0068  Score=54.89  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +..+.|.||+|+|||++++.++..++
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            34699999999999999999999876

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.03  E-value=0.0078  Score=48.92  Aligned_cols=22  Identities=41%  Similarity=0.409  Sum_probs=9.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      -.|+|+|++|+|||||++.+.+
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999998864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.02  E-value=0.013  Score=49.51  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      -.|+|+|++|+|||||++.+.+
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4699999999999999999875

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.01  E-value=0.013  Score=52.23  Aligned_cols=24  Identities=33%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|.+|||||||++.|.+..
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999998753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.01  E-value=0.011  Score=57.44  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           92 LDGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        92 l~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ++|++++|+|++|+|||||++.|+...
T Consensus       149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          149 IKGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             ETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCccHHHHHHHhhh
Confidence            349999999999999999999887643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.00  E-value=0.014  Score=48.03  Aligned_cols=22  Identities=23%  Similarity=0.138  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999999865

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.00  E-value=0.016  Score=49.53  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=21.7

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      +++   |+.+.|.|++|+||||++--++
T Consensus        27 l~~---G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPE---GTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EET---TCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCC---CeEEEEEeCCCCCHHHHHHHHH
Confidence            566   9999999999999999986554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.98  E-value=0.011  Score=54.77  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.++|+|++|+|||||++.|++..
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5689999999999999999998764

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.97  E-value=0.014  Score=54.10  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC--Cccccc
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALD--YTFADS  125 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~  125 (287)
                      .+.+   |..+.|.||+|+|||||+..++...+  ..|++.
T Consensus       119 Gi~~---gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          119 HRYA---SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEEE---SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCC---CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            3555   88889999999999999999986422  335555

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.96  E-value=0.0067  Score=58.19  Aligned_cols=33  Identities=33%  Similarity=0.527  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccch
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSD  126 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d  126 (287)
                      ..+|+|+|++|+||||++..||..+     ..-++|+|
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            3689999999999999999999875     34556665

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.94  E-value=0.013  Score=59.59  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ...+.|+||+|+||||+++.||..+
T Consensus       201 ~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999999986

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.94  E-value=0.012  Score=48.85  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .-.|+|+|++|+|||||++.+.+
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            46799999999999999998864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.93  E-value=0.011  Score=60.94  Aligned_cols=36  Identities=17%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc--chhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD--SDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid--~d~~i  129 (287)
                      ...+.|.||+|||||.+++.+|..++.+|+.  +..++
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~  548 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL  548 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence            4568899999999999999999999999964  44544

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=94.92  E-value=0.012  Score=52.27  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999987653

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.92  E-value=0.011  Score=53.83  Aligned_cols=35  Identities=11%  Similarity=0.037  Sum_probs=28.0

Q ss_pred             eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+++.--+.+   |+.+.|.|++|+||||++..++..
T Consensus        57 ~LD~~lgGl~~---G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           57 ELDRMTYGYKR---RNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             HHHHHHSSBCT---TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhhcCCCCC---CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            35555445777   999999999999999999888743

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.90  E-value=0.0098  Score=53.62  Aligned_cols=29  Identities=24%  Similarity=0.289  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      .+.+.||+|+||||+++.++..++.+|+.
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~   78 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHDVNADMMF   78 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence            55667779999999999999999887754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.90  E-value=0.015  Score=52.86  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ..|+|+|.+|+|||||++.|.+.
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999874

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.89  E-value=0.0067  Score=51.15  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|++|+|||||++.|.+..
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4579999999999999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.88  E-value=0.014  Score=52.23  Aligned_cols=25  Identities=28%  Similarity=0.239  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      --.|+|+|.+|+|||||++.|.+.-
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            3479999999999999999998764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.88  E-value=0.013  Score=55.02  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|+|++|+|||||++.|.+..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998863

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.86  E-value=0.015  Score=52.96  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+.|.||+|+||||+++.++..+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999988764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.0095  Score=54.93  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +.++.|.||+|+|||++.+.++..+
T Consensus        45 ~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           45 NKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999887

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=94.85  E-value=0.011  Score=54.80  Aligned_cols=27  Identities=30%  Similarity=0.490  Sum_probs=25.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      |..|+|=|+-||||||+++.|+..++.
T Consensus         7 ~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            7 IVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            789999999999999999999998864

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=94.85  E-value=0.017  Score=50.43  Aligned_cols=24  Identities=29%  Similarity=0.157  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      |..+.+.|++|+||||++-.++..
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r   35 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHR   35 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHH
Confidence            889999999999999987665543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.84  E-value=0.016  Score=48.52  Aligned_cols=23  Identities=22%  Similarity=0.081  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .-.|+|+|++|+|||||++.+.+
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHh
Confidence            45799999999999999988875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.84  E-value=0.016  Score=48.41  Aligned_cols=22  Identities=36%  Similarity=0.377  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            6999999999999999998754

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.81  E-value=0.018  Score=52.29  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             eeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           87 EVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      -+++   |+.+.|.|++|+||||++..++.
T Consensus        94 Gl~~---g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLES---QSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEET---TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccC---CeEEEEECCCCCCHHHHHHHHHH
Confidence            4566   99999999999999999998875

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=94.80  E-value=0.012  Score=57.72  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=26.4

Q ss_pred             ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           83 AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        83 ~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .+.+.+..   +.++.|.|++||||||+++.|..
T Consensus       159 pv~ldL~~---~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          159 PVVADLAK---MPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEEGGG---SCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEccc---CceEEEECCCCCCHHHHHHHHHH
Confidence            35567777   89999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=94.76  E-value=0.017  Score=54.17  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +..|+|+|.+|+|||||++.|.+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            467999999999999999999884

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.74  E-value=0.017  Score=52.41  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ..|+|+|.+|+|||||++.|.+.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57999999999999999999874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.73  E-value=0.02  Score=48.72  Aligned_cols=25  Identities=28%  Similarity=0.106  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      |..+++.|||||||||.+--++..+
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHH
Confidence            8899999999999999877666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	4e-16
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	8e-14
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	6e-13
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	2e-12
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	7e-12
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	2e-11
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	2e-10
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	3e-10
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	1e-09
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	3e-08
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	1e-06
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	1e-04
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	2e-04
d1jjva_	205	c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus in	4e-04
d1vhta_	208	c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia co	5e-04
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	9e-04
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	0.002
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	0.002
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	0.003
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	0.004

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 72.3 bits (176), Expect = 4e-16
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 26/180 (14%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +  +G MGSGK+T+   L+  LD  F DSD  +E+      V++IF++  E +FRE E K
Sbjct: 3   IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ-KFNQKVSEIFEQKRENFFREQEQK 61

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLD 216
                S   +  +ATGGG V         + G  ++L    + L +R+        PL  
Sbjct: 62  MADFFSSCEKACIATGGGFVN---VSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFY 118

Query: 217 YDSADSYTKAFTALSALSKERSEAY-ANADATVSLLNLAACIGLKDVLDITPTTIAMEVL 275
            +              L  ER   Y   A+  +            ++ +     +  E+ 
Sbjct: 119 DE---------IKAKKLYNERLSKYEQKANFIL------------NIENKNIDELLSEIK 157

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 65.8 bits (159), Expect = 8e-14
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 16/160 (10%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           + + G  G+GKT++ E+++  LD         + K           +        + E +
Sbjct: 8   ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK-ENHFYTEYDTELDTHIIEEKDEDR 66

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ---GITVFLNVPLDALARRIAAVGTDSFP 213
            L  +    + ++ + G  VV   +     +    + V L+   + L  R+         
Sbjct: 67  LLDFM----EPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAK 122

Query: 214 LLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNL 253
             +   A+             +E  +AY   D  +   N 
Sbjct: 123 RAENMEAEIQCICE-------EEARDAY-EDDIVLVREND 154

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 6e-13
 Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 14/145 (9%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           + L G  G GKTT+G+ L+      + +      +           +        +    
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDG--YDEEYDCPILDEDRVVD 64

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLD 216
            L         +V   G        +  +       L    + L  R+   G +   L D
Sbjct: 65  ELDNQMREGGVIVDYHGCDFFPERWFHIVF-----VLRTDTNVLYERLETRGYNEKKLTD 119

Query: 217 YDSADSYTKAFTALSALSKERSEAY 241
               + +   +       +E + +Y
Sbjct: 120 NIQCEIFQVLY-------EEATASY 137

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 31/154 (20%), Positives = 52/154 (33%), Gaps = 7/154 (4%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +F+VG  G G TTVG  L+ AL Y F D+D +++   G T    +  E    + R     
Sbjct: 5   IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEA 64

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLD 216
                +         G   + +   +      +        +   R  A++     P L 
Sbjct: 65  LQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLT 124

Query: 217 YDSADSYTKAFTALSALSKERSEAYAN-ADATVS 249
                        + A+ +ER   Y + A   V 
Sbjct: 125 GRPIAE------EMEAVLREREALYQDVAHYVVD 152

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 60.5 bits (145), Expect = 7e-12
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 20/180 (11%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
           +FLVG MG+GK+T+G  L+  L+  F DSD+ +EK  G         E  E +    E  
Sbjct: 5   IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKV 64

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLD 216
             +        +   GG    R    R   +G+ V+L   ++    R           ++
Sbjct: 65  INELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVE 124

Query: 217 YDSADSYTKAFTALSALSKERSEAY-ANADATVSLLNLAACIGLKDVLDITPTTIAMEVL 275
               +              ER+  Y   AD T+               D +   +A +++
Sbjct: 125 TPPREVLEALA-------NERNPLYEEIADVTI------------RTDDQSAKVVANQII 165

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 24/124 (19%), Positives = 35/124 (28%), Gaps = 6/124 (4%)

Query: 92  LDGQCLFLVGMMGSGKTTVGEILSDALDYTFA--DSDKYVEKLMGGTSVAQIFKESGEAY 149
           L G  L L G  GSGK+T+ E L++          SD     +  G  +     +S +  
Sbjct: 2   LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHG-RIDPWLPQSHQQN 60

Query: 150 FREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVF---LNVPLDALARRIAA 206
               +  A        +       G V       F      +    L         R   
Sbjct: 61  RMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLD 120

Query: 207 VGTD 210
            G D
Sbjct: 121 RGGD 124

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 20/192 (10%)

Query: 94  GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREY 153
           G  +FL G M SGK  +   L   L+     S   +        ++     + E      
Sbjct: 6   GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNI 65

Query: 154 ESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFP 213
           +  A     L                 + +F R  ++   +  L  +A  +         
Sbjct: 66  QRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKR 125

Query: 214 LLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAME 273
            +   +     K FT +        E    AD  V            D    +  +I  E
Sbjct: 126 GIYAAARRGEIKGFTGVDD----PYETPEKADLVV------------DFSKQSVRSIVHE 169

Query: 274 VLVQAQKYLNSK 285
           ++      L S+
Sbjct: 170 II----LVLESQ 177

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 22/180 (12%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
             LVG+ GSGK+T+G  L+ AL     D+D  +E+  G +       +  + + R  E  
Sbjct: 4   AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDV 63

Query: 157 ALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLD 216
               L+     +   GG      +        +        + + R     G    PLL 
Sbjct: 64  VRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTG---GNTVRPLLA 120

Query: 217 YDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVL 275
                          AL  +R+  Y   A   V            D     P  +   +L
Sbjct: 121 GPDRAE------KYRALMAKRAPLYRRVATMRV------------DTNRRNPGAVVRHIL 162

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 3/117 (2%)

Query: 93  DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL--MGGTSVAQIFKESGEAYF 150
           D     L+G+ GSGK+ V   ++  L   F D D    +       S   +  +  + + 
Sbjct: 5   DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL 64

Query: 151 REYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAA 206
           +     A          ++             R        ++L    D +  R+ A
Sbjct: 65  QALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKA 121

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 24/194 (12%)

Query: 94  GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV--EKLMGGTSVAQIFKESGEAYFR 151
           G  ++L G+ G+GKTTV   L + L                 G         E  E   R
Sbjct: 19  GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR 78

Query: 152 EYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDS 211
                A          + +          N R + +G ++        +   +       
Sbjct: 79  RIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEV--FVDAPLHVCEQRD 136

Query: 212 FPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIA 271
              L   +     K FT +        E     +  +                       
Sbjct: 137 VKGLYKKARAGEIKGFTGI----DSEYEKPEAPELVL------------KTDSCDVNDCV 180

Query: 272 MEVLVQAQKYLNSK 285
            +V+    + L  +
Sbjct: 181 QQVV----ELLQER 190

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 25/196 (12%), Positives = 53/196 (27%), Gaps = 34/196 (17%)

Query: 95  QCLFLVGMMGSGKTTVGEILSDALDYT-FADSDKYVEKLMGGTSVAQIFKESGEAYFREY 153
           +   + G  G GK+T  + L+  LD + + + D     ++GG        E     ++  
Sbjct: 3   KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62

Query: 154 ESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ------GITVFLNVPLDALARRIAAV 207
               +  L      V+             + ++          + L    + L RR A  
Sbjct: 63  TDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR 122

Query: 208 GTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP 267
             D          +   +         +E      +                 +   + P
Sbjct: 123 KKDE------QMGERCLELV-------EEFESKGIDERYFY------------NTSHLQP 157

Query: 268 TTIAMEV--LVQAQKY 281
           T +   V  L    ++
Sbjct: 158 TNLNDIVKNLKTNPRF 173

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 21/173 (12%), Positives = 40/173 (23%), Gaps = 17/173 (9%)

Query: 94  GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREY 153
            + + L G   +GK+ +   L   L   +                    K        E+
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA------MPLKMQSAEGGIEF 56

Query: 154 ESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFP 213
           ++     +    + +       VV             VFL     A  R  + VG     
Sbjct: 57  DADGGVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLG-GAAAQERWRSFVGDLDVL 115

Query: 214 LLDYDSADSYTKA--------FTALSALSKERSEAYANADATV--SLLNLAAC 256
            +      +  +            ++A            D  V  +      C
Sbjct: 116 WVGVRCDGAVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVEVDTTHKESIEC 168

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTS 137
           + L+G  G+GK T    L +        +   +   +   +
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGT 45

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 99  LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKAL 158
           L G +GSGKTT+  + +D L     D+D    +++   S                E   L
Sbjct: 7   LTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGEL 65

Query: 159 QKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLN 194
            + +L  +          +  L    +R+ +   L 
Sbjct: 66  NRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLA 101

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 99  LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133
           L G +GSGK+TV    +D L     D+D    +++
Sbjct: 8   LTGGIGSGKSTVANAFAD-LGINVIDADIIARQVV 41

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 37.6 bits (86), Expect = 9e-04
 Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 3/55 (5%)

Query: 99  LVGMMGSGKTTVGEILSDALDYT---FADSDKYVEKLMGGTSVAQIFKESGEAYF 150
           L G+  SGK T  + +           A   K       G   A           
Sbjct: 6   LSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKE 60

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 11/128 (8%)

Query: 97  LFLVGMMGSGKTTV-GEILSDALDYTFADSDKYVEKLMGG-TSVAQIFKESGEAYFREYE 154
           +  +G  GSGK+T   E ++    +   + D Y + +M         + +  E      +
Sbjct: 5   ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64

Query: 155 SKALQKLSLVPQQVVATGGGAV---------VRPLNWRFMRQGITVFLNVPLDALARRIA 205
               + +      V                        +  +      +VP   L +R +
Sbjct: 65  FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124

Query: 206 AVGTDSFP 213
             GT + P
Sbjct: 125 KRGTKAVP 132

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 99  LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133
           + G +GSGK+TV  +L     Y   D D    +  
Sbjct: 8   ITGNIGSGKSTVAALLRS-WGYPVLDLDALAARAR 41

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADS-DKYVEKLMGGTSVAQIFKESGEAYFREYES 155
             ++G  GSGK TV   ++   +     S D   + ++ GT +  + K   +      + 
Sbjct: 9   AAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDD 68

Query: 156 KALQKLSLVPQQVVATG---GGAVVRPLNWRFMRQGITVFLNVPL--------------- 197
              + +    + +        G          + +   +   + L               
Sbjct: 69  VMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRP 128

Query: 198 DALARRIAAVGTDSFPLLDY 217
           + + +R+ A    + P+L+Y
Sbjct: 129 ETVVKRLKAYEAQTEPVLEY 148

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 97  LFLVGMMGSGKTTVGEILSDALDYTFADSD 126
           + L+G  G+GK T    L++ L      + 
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQISTG 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.97
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.97
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.95
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.82
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.67
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.66
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.65
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.58
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.55
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.55
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.54
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.53
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.52
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.52
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.51
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.51
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.5
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.49
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.49
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.49
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.49
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.48
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.48
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.48
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.48
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.47
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.47
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.47
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.46
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.46
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.45
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.43
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.42
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.41
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.39
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.39
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.39
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.39
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.38
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.37
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.37
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.35
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.28
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.26
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.23
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.09
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.05
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.03
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.0
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.99
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.95
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.94
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.94
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.9
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	98.86
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.86
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.85
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.83
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.79
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.73
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.6
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.56
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.52
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.49
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.42
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.38
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.16
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.16
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.13
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.86
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.76
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.68
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.63
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.58
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.56
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.54
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.52
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.46
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.41
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.39
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.32
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.31
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.3
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.3
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.27
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	97.22
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.22
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.22
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.21
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.11
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.08
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	97.07
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	97.06
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.99
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.99
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.88
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.86
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.78
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.78
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.78
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.78
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.77
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.7
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.7
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.66
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.61
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.61
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.6
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.6
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.57
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.56
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.56
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.54
d1okkd2	207	GTPase domain of the signal recognition particle r	96.48
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.47
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.47
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.45
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.41
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.39
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.31
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.3
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.3
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.3
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.27
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.27
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.25
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.19
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.16
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.16
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.1
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.08
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.07
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.05
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.03
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.02
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.01
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.97
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.96
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.95
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.92
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.91
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.84
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.84
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.81
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.79
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.78
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.71
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.7
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.69
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.68
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.64
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.64
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.63
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.58
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.57
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.54
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.54
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.52
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.51
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.51
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.5
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.48
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.47
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.47
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.46
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.45
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.45
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.41
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.4
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.4
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.33
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.32
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.24
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.24
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.16
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.15
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.11
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.02
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.99
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.99
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.99
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.98
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.98
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.88
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.87
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.86
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.83
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.83
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.74
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.71
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.63
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.63
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.59
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.57
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.52
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.48
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.46
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.43
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.41
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.4
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.32
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.29
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.19
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.14
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.06
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.97
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.76
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.58
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.48
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.3
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.24
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.88
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.81
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.79
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.75
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	92.53
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.5
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.42
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.31
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.09
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.0
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.85
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.75
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.65
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.48
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.36
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	91.31
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.23
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.23
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	91.23
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.06
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.0
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.56
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.45
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.37
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	90.24
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.09
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.9
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.85
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.07
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.81
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	88.64
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.47
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.81
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.45
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	87.44
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.75
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.57
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.06
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.28
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	85.24
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.1
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.03
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.78
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	84.54
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.38
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	84.38
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	83.92
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	83.43
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	83.06
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.03
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	82.59
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.56
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.01
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	81.38
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	80.81
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	80.2
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	80.18

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=4.9e-31  Score=219.99  Aligned_cols=162  Identities=30%  Similarity=0.398  Sum_probs=144.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      .|+|+|++||||||+++.||..|+++|+|+|.++++.. |+++.+++...|+..||+.|.+++..+....+.++++|||.
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~-g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~gg~~   81 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGA   81 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTG
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh-hhhhhhhhhhhhHHHHHHHHhhhhhhccccccccccccccc
Confidence            48899999999999999999999999999999999998 99999999999999999999999988877778899999999


Q ss_pred             EeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccc
Q 023118          176 VVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLA  254 (287)
Q Consensus       176 v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a  254 (287)
                      +..+.++.++.++.+|||+++++.+.+|+..+  ..||++...+  .    .+.+.+++++|.++|++ ||++|      
T Consensus        82 ~~~~~~~~~l~~~~~I~L~~~~~~~~~R~~~~--~~Rpll~~~~--~----~e~~~~l~~eR~~~Y~~~ad~~I------  147 (165)
T d2iyva1          82 VTSPGVRAALAGHTVVYLEISAAEGVRRTGGN--TVRPLLAGPD--R----AEKYRALMAKRAPLYRRVATMRV------  147 (165)
T ss_dssp             GGSHHHHHHHTTSCEEEEECCHHHHHHHTTCC--CCCSSTTSCC--H----HHHHHHHHHHHHHHHHHHCSEEE------
T ss_pred             cccccccccccccceeeeeccchhhhhccccc--ccchhccCcc--H----HHHHHHHHHHHHHHHHhhCCEEE------
Confidence            99999999998999999999999999999654  4689876432  1    25678899999999998 88875      


Q ss_pred             cccccccCCCCCHHHHHHHHHHHH
Q 023118          255 ACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       255 ~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                            ||+++||+|++++|++.|
T Consensus       148 ------dt~~~s~~ei~~~Ii~~L  165 (165)
T d2iyva1         148 ------DTNRRNPGAVVRHILSRL  165 (165)
T ss_dssp             ------ECSSSCHHHHHHHHHTTS
T ss_pred             ------ECCCCCHHHHHHHHHhcC
Confidence                  899999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.97  E-value=2e-30  Score=216.14  Aligned_cols=158  Identities=27%  Similarity=0.444  Sum_probs=137.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      .|+|+||+||||||+++.||..++++|+|+|.++++.. |+++.+++...|...||..|..+++.+......|+++|||.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~-g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~~   80 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF-NQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF   80 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH-TSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH-hhhhhhHHHhhhhccchhhhhhhchhhhhccccccccccch
Confidence            58999999999999999999999999999999999998 99999999999999999999999999988888888888886


Q ss_pred             EeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecccc
Q 023118          176 VVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNL  253 (287)
Q Consensus       176 v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~  253 (287)
                      +.    ...+. .+++|||++|++++++|+..+..+.||++...         ..+.+++++|.+.|++ ||++|     
T Consensus        81 ~~----~~~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~---------~~~~~l~~~r~~~Y~~~ad~~I-----  142 (161)
T d1viaa_          81 VN----VSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDE---------IKAKKLYNERLSKYEQKANFIL-----  142 (161)
T ss_dssp             GG----STTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCH---------HHHHHHHHHHHHHHHHHCSEEE-----
T ss_pred             hh----HHHHHhCCeEEEeccchHHHHHHHccccccccccccCc---------hHHHHHHHHHHHHHHhhCCEEE-----
Confidence            52    23333 58999999999999999987766779987531         3467889999999986 88875     


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHH
Q 023118          254 AACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       254 a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                             ||++++|+|++++|++.|+
T Consensus       143 -------dt~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         143 -------NIENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             -------ECTTCCHHHHHHHHHHHHC
T ss_pred             -------ECCCCCHHHHHHHHHHHhC
Confidence                   8999999999999998873

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.95  E-value=3.2e-28  Score=203.64  Aligned_cols=164  Identities=37%  Similarity=0.554  Sum_probs=139.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      +.|+|+|++||||||+++.||..|+++|+|+|.++++.. |+++.+++...|+..||..+.+++..... .+.++++|+|
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~-g~~i~ei~~~~g~~~~~~~~~~~l~~~~~-~~~~~~~~~~   80 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFRRRESEALQAVAT-PNRVVATGGG   80 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEECCTT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh-hhhhhhhhcccchHHHHHHHHHHHHhhcc-ccceeccccc
Confidence            468899999999999999999999999999999999988 99999999999999999999999888654 5678999999


Q ss_pred             eEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcC-CCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118          175 AVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVG-TDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL  251 (287)
Q Consensus       175 ~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~-~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~  251 (287)
                      .+..+.++.+|++ +.+|||++|++.+.+|+..+. ...||....   .   ...+.+.+++++|.|+|+. +|++|   
T Consensus        81 ~~~~~~~~~~l~~~~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~---~---~~~~~~~~~~~er~~lY~~~a~~~I---  151 (170)
T d1e6ca_          81 MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTG---R---PIAEEMEAVLREREALYQDVAHYVV---  151 (170)
T ss_dssp             GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTH---H---HHHHHHHHHHHHHHHHHHHHCSEEE---
T ss_pred             chhhhHHHHhhhccceeEEEecCchhHHHHHhhccccccCCCCCC---C---CHHHHHHHHHHHHHHHHHHcCCEEE---
Confidence            9999988888874 999999999999999997643 235665542   1   2346788999999999987 77765   


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          252 NLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       252 ~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                               |++ .+|++++++|++.++
T Consensus       152 ---------d~~-~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         152 ---------DAT-QPPAAIVCELMQTMR  169 (170)
T ss_dssp             ---------ETT-SCHHHHHHHHHHHTT
T ss_pred             ---------cCC-CCHHHHHHHHHHHcC
Confidence                     776 599999999998753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.5e-20  Score=150.09  Aligned_cols=165  Identities=30%  Similarity=0.465  Sum_probs=108.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      +.|+|+||+||||||+++.||..|+++|+|.+....... |..........++...+................+...+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   81 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhh-cccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccch
Confidence            579999999999999999999999999999999987776 6666655455555555544444333333334444444443


Q ss_pred             eEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccc
Q 023118          175 AVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLN  252 (287)
Q Consensus       175 ~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~  252 (287)
                      ..........+. .+..+|+..++..+..|+..+....+......   .    ...+...+.+|.+.|++ +|++     
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~y~~~~d~~-----  149 (169)
T d1kaga_          82 SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETP---P----REVLEALANERNPLYEEIADVT-----  149 (169)
T ss_dssp             GGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCC---C----HHHHHHHHHHHHHHHHHHCSEE-----
T ss_pred             hhhhhhhhHHhhhcceeeeccCcHHHhhhHhhhccccchhccccc---c----hhHHHHHHHHhhhhhhccCCEE-----
Confidence            333333333333 48899999999999999876543222222111   1    25678888999999987 7876     


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHH
Q 023118          253 LAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       253 ~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                             |||+++||+|++++|++.|+
T Consensus       150 -------Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         150 -------IRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             -------C-----CHHHHHHHHHHHHC
T ss_pred             -------EECCCCCHHHHHHHHHHHhC
Confidence                   48999999999999999873

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.67  E-value=9.7e-17  Score=131.36  Aligned_cols=161  Identities=16%  Similarity=0.095  Sum_probs=96.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHhccCCccc--cchhHHHHHhCCCchhhh---hhhhchhhhhhhHHHHHHHhhcCCC
Q 023118           92 LDGQCLFLVGMMGSGKTTVGEILSDALDYTFA--DSDKYVEKLMGGTSVAQI---FKESGEAYFREYESKALQKLSLVPQ  166 (287)
Q Consensus        92 l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi--d~d~~ie~~~~G~~i~~~---~~~~g~~~fr~~e~~~l~~l~~~~~  166 (287)
                      |.|+.|+|+||+||||||+++.|++.++.+|+  |+|.+..... +......   ........+. .....+........
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   79 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQQNRMIMQ-IAADVAGRYAKEGY   79 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCC-SSCCCTTSSSHHHHHHHHHH-HHHHHHHHHHHTSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHh-cCCcccccchhhhHHHHHHH-HHHHHHHHHHhcCC
Confidence            46999999999999999999999999998885  5565543222 2222111   0111111111 11122333333445


Q ss_pred             eEEecCCceEeccccHHhhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118          167 QVVATGGGAVVRPLNWRFMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA  242 (287)
Q Consensus       167 ~via~ggG~v~~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~  242 (287)
                      .++..+..   .+.....+.    ....|||+++++.+.+|+..|+.   +....         .+.+..+++.....+.
T Consensus        80 ~vi~~~~~---~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~---------~~~~~~~~~~~~~~~~  144 (176)
T d1zp6a1          80 FVILDGVV---RPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGG---DSLSD---------PLVVADLHSQFADLGA  144 (176)
T ss_dssp             EEEECSCC---CTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCT---TSCCC---------HHHHHHHHHHTTCCGG
T ss_pred             CeEecccc---cHHHHHHHHhcccccccccCCCCHHHHHHHHHhCCC---ccccc---------hhhHHHHHHHHhhccc
Confidence            56666543   233333332    14679999999999999987652   22211         1234444444333333


Q ss_pred             hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          243 NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       243 ~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      .++.+            |||++++++|++++|++.++.-
T Consensus       145 ~~~~~------------idt~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         145 FEHHV------------LPVSGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             GGGGE------------EECTTCCTTTTTTTTHHHHHHT
T ss_pred             ccCEE------------EECCCCCHHHHHHHHHHHHHcC
Confidence            34444            5899999999999999998753

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.66  E-value=6.7e-17  Score=132.30  Aligned_cols=160  Identities=18%  Similarity=0.202  Sum_probs=94.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC-CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD-YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATG  172 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~-~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~g  172 (287)
                      +..|+|+||+||||||+++.|+..++ +.|++.+.+.........  .. ...+...+.......+.+..   ..+++.+
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~---~~~i~~~   78 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTE--YD-TELDTHIIEEKDEDRLLDFM---EPIMVSR   78 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC---------CCCCCHHHHHHHHHHH---HHHHTSS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhh--HH-HhhcccchHHHHHHHHHHHH---Hhhhhhc
Confidence            78999999999999999999999996 455666655533321111  11 11122222222222222211   1233344


Q ss_pred             CceEeccccHHhhcC---CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEe
Q 023118          173 GGAVVRPLNWRFMRQ---GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVS  249 (287)
Q Consensus       173 gG~v~~~~~~~~L~~---g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~  249 (287)
                      ++.+.....+..+.+   ..+|||++|++++.+|+..|+.. +|....   ..   ..+.+..++.++.+.|. +++++ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~vI~L~~~~e~l~~Rl~~R~~~-~~~~~~---~~---~~e~~~~~~~~~~~~~~-~~~~i-  149 (174)
T d1y63a_          79 GNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYS-EAKRAE---NM---EAEIQCICEEEARDAYE-DDIVL-  149 (174)
T ss_dssp             SEEEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCC-HHHHHH---HH---HHHHTTHHHHHHHHHSC-GGGEE-
T ss_pred             ccccccHHHHHHHHHhcCceEEEEECCHHHHHHHHHhCCCc-cccccc---ch---hhhhhhhhHHHHHHhhc-CCEEE-
Confidence            555555555555542   56899999999999999987532 222210   01   12445666777888886 34544 


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          250 LLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       250 ~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                                 |+++.|+++++..|.+.++
T Consensus       150 -----------~~~~~t~ee~~~~V~~I~~  168 (174)
T d1y63a_         150 -----------VRENDTLEQMAATVEEIRE  168 (174)
T ss_dssp             -----------EEECSSHHHHHHHHHHHHH
T ss_pred             -----------ECCCCCHHHHHHHHHHHHH
Confidence                       5667899998777655443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.3e-16  Score=130.49  Aligned_cols=156  Identities=15%  Similarity=0.222  Sum_probs=93.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV  168 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v  168 (287)
                      +..++|+||+||||||+++.|++.++..+++.|.+.....     .+....   ........+..... +.........+
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLN---DDDRKPWLQALNDA-AFAMQRTNKVS   81 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCC---HHHHHHHHHHHHHH-HHHHHHHCSEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCccee---hhhhHHHHHHHHHH-HHHHHhccCce
Confidence            6889999999999999999999999999999998743321     121111   11122222222222 22222223333


Q ss_pred             EecCCceEeccccHHhhcC----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-HHhhhhh
Q 023118          169 VATGGGAVVRPLNWRFMRQ----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-RSEAYAN  243 (287)
Q Consensus       169 ia~ggG~v~~~~~~~~L~~----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-R~~~Y~~  243 (287)
                      +...++.  ....+..+..    ..+|||++|++.+.+|+..|.++..+      .       +.+...++. +.|.|..
T Consensus        82 ~~~~~~~--~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~------~-------~~~~~~~~~~e~~~~~e  146 (171)
T d1knqa_          82 LIVCSAL--KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK------T-------QMLVTQFETLQEPGADE  146 (171)
T ss_dssp             EEECCCC--SHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCC------H-------HHHHHHHHHCCCCCTTC
T ss_pred             Eeeccch--HHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCcc------H-------HHHHhhHHHhhCCCccc
Confidence            3333221  1223333432    36799999999999999876532111      1       112222232 3355555


Q ss_pred             CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          244 ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       244 ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      +++.+           ||++. |+|+|+++|++.|++
T Consensus       147 ~~~~~-----------id~~~-~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         147 TDVLV-----------VDIDQ-PLEGVVASTIEVIKK  171 (171)
T ss_dssp             TTEEE-----------EECSS-CHHHHHHHHHHHHHC
T ss_pred             CCEEE-----------EeCCC-CHHHHHHHHHHHhcC
Confidence            66554           68874 999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=124.41  Aligned_cols=160  Identities=14%  Similarity=0.110  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA  175 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~  175 (287)
                      .|+|+||+||||||+++.||..++++|++.|..++.........+.  ......+.......+............     
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   78 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEE--YDCPILDEDRVVDELDNQMREGGVIVD-----   78 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCSS--SSCCCBCHHHHHHHHHHHHHHCCEEEE-----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhHH--hhhhhHHHHHHHHHhhhhhhcCCcccc-----
Confidence            5889999999999999999999999999999998654311111111  001111111111122222211111111     


Q ss_pred             EeccccHHhhc---CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118          176 VVRPLNWRFMR---QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL  251 (287)
Q Consensus       176 v~~~~~~~~L~---~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~  251 (287)
                         ......+.   ...+|||++|++.+.+|+..++. .+|....      ....+.+...+.+|.+.|.. +++.+   
T Consensus        79 ---~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~-~~~~~~~------~~~~~~~~~~~~e~~~~~~~~~~i~~---  145 (173)
T d1rkba_          79 ---YHGCDFFPERWFHIVFVLRTDTNVLYERLETRGY-NEKKLTD------NIQCEIFQVLYEEATASYKEEIVHQL---  145 (173)
T ss_dssp             ---CSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTC-CHHHHHH------HHHHHHTTHHHHHHHHHSCGGGEEEE---
T ss_pred             ---hhHHHHHHHhcCCCcceecCCHHHHHHHHHhcCC-Ccccccc------cchhhhHHHHHHHHHHHhhhccEEEE---
Confidence               11122222   36889999999999999998652 3333221      01124456677888898876 44443   


Q ss_pred             ccccccccccCC-CCCHHHHHHHHHHHHHHHhhh
Q 023118          252 NLAACIGLKDVL-DITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       252 ~~a~~~~~idt~-~~t~~eva~~i~~~i~~~l~~  284 (287)
                               |++ .-+.++.+++|++.++++++.
T Consensus       146 ---------~~~~~~~~~~~i~~Ii~~i~~~~k~  170 (173)
T d1rkba_         146 ---------PSNKPEELENNVDQILKWIEQWIKD  170 (173)
T ss_dssp             ---------ECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence                     222 123455677888888888764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.1e-15  Score=134.27  Aligned_cols=67  Identities=16%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      ++++||+++|++..+|+|+||++++   |++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++.+.
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~---Gei~~liGpsGsGKSTLl~~i~Gl~~p---~sG~I~---i~g~~i~~~   67 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHE---GEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLF---IGEKRMNDT   67 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE---ESSSCCTTS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEE---ECCEECCCC
Confidence            6899999999999999999999999   999999999999999999999999999   688775   578777543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1.3e-15  Score=134.36  Aligned_cols=70  Identities=17%  Similarity=0.262  Sum_probs=63.1

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      ++.|+++||+++||+.++|+++||++++   |++++|+||||||||||+++|+|++.|   |+|.+.   ++|.++...
T Consensus         4 M~~I~v~nlsk~yg~~~al~~vsl~v~~---Ge~~~liGpsGaGKSTLl~~i~Gl~~p---~sG~I~---i~g~~i~~~   73 (239)
T d1v43a3           4 MVEVKLENLTKRFGNFTAVNKLNLTIKD---GEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIY---FGDRDVTYL   73 (239)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEECTTS
T ss_pred             cCeEEEEEEEEEECCEEEEcceeEEECC---CCEEEEECCCCChHHHHHHHHHcCCCC---CCCEEE---EcceecccC
Confidence            3458999999999999999999999999   999999999999999999999999999   788776   578777543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.54  E-value=1.3e-15  Score=134.35  Aligned_cols=68  Identities=21%  Similarity=0.262  Sum_probs=61.6

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      +.|+++||++.||+.++|+|+||++++   |++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++..
T Consensus         2 ~~i~v~nl~k~yg~~~al~~vsl~i~~---Ge~~~liG~sGaGKSTll~~i~gl~~p---~sG~I~---~~g~~i~~   69 (240)
T d1g2912           2 AGVRLVDVWKVFGEVTAVREMSLEVKD---GEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIY---IGDKLVAD   69 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEEEEE
T ss_pred             CcEEEEeEEEEECCEEEEcceeeEEcC---CCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEE---ECCEEecc
Confidence            458999999999999999999999999   999999999999999999999999999   788775   56766644

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.53  E-value=1.7e-15  Score=134.68  Aligned_cols=68  Identities=16%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118           63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA  139 (287)
Q Consensus        63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~  139 (287)
                      +++|+++||+++||+.++|+|+||++++   |++++|+||||||||||+++|+|.+.|   |+|.+.   ++|.++.
T Consensus         2 M~iL~v~nlsk~yg~~~aL~~vs~~v~~---Gei~~liG~nGaGKSTLl~~i~Gl~~p---~~G~I~---~~g~~i~   69 (254)
T d1g6ha_           2 MEILRTENIVKYFGEFKALDGVSISVNK---GDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVY---FENKDIT   69 (254)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECCEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEECT
T ss_pred             cceEEEEEEEEEECCeEEEcceEEEECC---CCEEEEECCCCCcHHHHHHHHHCCCcC---CCcEEE---ECCEecc
Confidence            4579999999999999999999999999   999999999999999999999999999   788775   4676654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.52  E-value=2.2e-15  Score=132.92  Aligned_cols=68  Identities=21%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .+|+++||+++||+..+|+|+||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++..
T Consensus         5 ~~Lev~~l~k~yg~~~al~~vs~~i~~---Gei~~liGpnGaGKSTl~~~i~Gl~~p---~~G~I~---~~G~~i~~   72 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIHAIKGIDLKVPR---GQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKII---FNGQDITN   72 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEECTT
T ss_pred             eEEEEeeEEEEECCEEEEeeeeEEECC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEE---eccccccc
Confidence            479999999999999999999999999   999999999999999999999999999   788775   56776643

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.52  E-value=1.7e-15  Score=133.87  Aligned_cols=68  Identities=16%  Similarity=0.241  Sum_probs=59.3

Q ss_pred             cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      ||+++||+|+|+ ++.+|+|+||++++   |++++|+||||||||||+++|+|.+.|   +.|.+.   ++|.++.++
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~---Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~---i~g~~i~~~   69 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQP---NSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEIT---IDGQPIDNI   69 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECT---TEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEE---ETTEESTTT
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHHhhCC---CCCEEE---ECCEEeccc
Confidence            589999999995 46799999999999   999999999999999999999999999   577664   467666543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.51  E-value=1.6e-14  Score=117.42  Aligned_cols=157  Identities=13%  Similarity=0.069  Sum_probs=85.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCcccc--chhHHHHHhCCCchhh----hhhhh-------chhhhhhhHHHHHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFAD--SDKYVEKLMGGTSVAQ----IFKES-------GEAYFREYESKALQ  159 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid--~d~~ie~~~~G~~i~~----~~~~~-------g~~~fr~~e~~~l~  159 (287)
                      ..+.|+|.|+|||||||+++.|+..++.++++  .|.+..... +.....    .+...       .....+....+.+.
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMP-LKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSC-GGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhcccc-ccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999988754  444443211 111100    00000       00112222222333


Q ss_pred             HhhcCCCeEEecCC---ceEeccccHHhhcC--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118          160 KLSLVPQQVVATGG---GAVVRPLNWRFMRQ--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS  234 (287)
Q Consensus       160 ~l~~~~~~via~gg---G~v~~~~~~~~L~~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~  234 (287)
                      .+......++..+.   ..-.....+.....  ..+|||++|++.+.+|...++++. |-        +       .+..
T Consensus        81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-~~--------~-------~~~~  144 (178)
T d1qhxa_          81 AMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRV-AG--------M-------AAKQ  144 (178)
T ss_dssp             HHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSC-TT--------H-------HHHH
T ss_pred             HHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCcc-hh--------h-------hhhh
Confidence            33333333333221   10000111112222  357999999999999998875321 11        1       1111


Q ss_pred             HHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          235 KERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       235 ~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      ...-..+..+|++            |||++++|+|++++|+++|
T Consensus       145 ~~~~~~~~~~dl~------------IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         145 AYVVHEGVEYDVE------------VDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             TTGGGTTCCCSEE------------EETTSSCHHHHHHHHHTTC
T ss_pred             hhhhhcCCCCCEE------------EECCCCCHHHHHHHHHHhc
Confidence            1122233346665            5999999999999998754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.51  E-value=9.3e-14  Score=117.34  Aligned_cols=163  Identities=18%  Similarity=0.186  Sum_probs=96.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh-hhhh---hhc----hhhhhhhHHHHHHHhhcCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA-QIFK---ESG----EAYFREYESKALQKLSLVP  165 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~-~~~~---~~g----~~~fr~~e~~~l~~l~~~~  165 (287)
                      .-+|+|+||+||||||+++.||..+++.++++|+++.+.....+.. ..+.   ..|    .+.......+.+..... .
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~-~   84 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLTQ-Y   84 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT-S
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhhh-c
Confidence            5689999999999999999999999999999999987654222211 1110   111    12222222222332221 2


Q ss_pred             CeEEecCCceEeccccHHhhcC----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh
Q 023118          166 QQVVATGGGAVVRPLNWRFMRQ----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY  241 (287)
Q Consensus       166 ~~via~ggG~v~~~~~~~~L~~----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y  241 (287)
                      + ++-.|  .+.+......|.+    ..+|||++|.+.+.+|+..+     |       +...+-++.+.+......+.|
T Consensus        85 ~-~ildG--fPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r-----~-------e~~~kr~~~y~~~~~~v~~~Y  149 (189)
T d2ak3a1          85 N-WLLDG--FPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDR-----P-------ETVVKRLKAYEAQTEPVLEYY  149 (189)
T ss_dssp             C-EEEES--CCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGS-----H-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-ccccc--ccchhhHHHHhhhcCcceEEEEEeccchhhhhhcccc-----h-------HHHHHHHHHHHHHHHHHHHHH
Confidence            2 33333  2222233344443    67899999999999998542     1       111122233334444445678


Q ss_pred             hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          242 ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       242 ~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      ++.+..+.          +|.  .++++|.++|.+.|+..+..
T Consensus       150 ~~~~~l~~----------idg--~~~~eV~~~I~~~i~~~l~~  180 (189)
T d2ak3a1         150 RKKGVLET----------FSG--TETNKIWPHVYAFLQTKLPQ  180 (189)
T ss_dssp             HHHTCEEE----------EEC--SSHHHHHHHHHHHHHTTSCB
T ss_pred             HhcCCEEE----------ECC--CChHHHHHHHHHHHHHHhhc
Confidence            76433332          344  46899999999999987664

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.50  E-value=1.8e-13  Score=114.61  Aligned_cols=168  Identities=13%  Similarity=0.153  Sum_probs=91.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCchhhhhhhh---chh-hhhhhHHHHHHHhhc-CCCe
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSVAQIFKES---GEA-YFREYESKALQKLSL-VPQQ  167 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i~~~~~~~---g~~-~fr~~e~~~l~~l~~-~~~~  167 (287)
                      ..+|+|+||+||||||+++.||..+++.++++|+++.+.. .+......+...   +.- .-......+...+.. ....
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKN   85 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhhcCC
Confidence            4689999999999999999999999999999999986554 232322221111   110 000001111111111 1222


Q ss_pred             EEecCCceEeccccHHhh----cC----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH-
Q 023118          168 VVATGGGAVVRPLNWRFM----RQ----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS-  238 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L----~~----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~-  238 (287)
                      ++..|.  +.+......+    ..    .++|||++|++.+.+|+..++....  ...+..+.   ...++..-.+... 
T Consensus        86 ~i~dg~--p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~--~~~d~~e~---~~~Rl~~y~~~~~~  158 (194)
T d1qf9a_          86 FLVDGF--PRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSG--RSDDNIES---IKKRFNTFNVQTKL  158 (194)
T ss_dssp             EEEETC--CCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSC--CTTCSHHH---HHHHHHHHHHTHHH
T ss_pred             eEEEec--chhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccc--cccccHHH---HHHHHHHHHHHHHH
Confidence            333332  1111112222    12    3689999999999999987543211  11111111   1223332222222 


Q ss_pred             --hhhhhCC-eEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          239 --EAYANAD-ATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       239 --~~Y~~ad-~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                        +.|...+ +.+           ||.+ .++++|.++|.+.|+.
T Consensus       159 ~~~~y~~~~~~~~-----------Id~~-~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         159 VIDHYNKFDKVKI-----------IPAN-RDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHHTTCEEE-----------EECS-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEE-----------EECC-CCHHHHHHHHHHHHHH
Confidence              3566643 333           6765 5999999999887764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.49  E-value=3e-15  Score=131.13  Aligned_cols=67  Identities=22%  Similarity=0.372  Sum_probs=60.1

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      +|+++||+++|++ .+|+|+||++++   |++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++.+.
T Consensus         1 mi~v~nlsk~y~~-~aL~~vs~~i~~---Ge~~~liGpsGaGKSTll~~l~Gl~~p---~sG~I~---~~G~~i~~~   67 (229)
T d3d31a2           1 MIEIESLSRKWKN-FSLDNLSLKVES---GEYFVILGPTGAGKTLFLELIAGFHVP---DSGRIL---LDGKDVTDL   67 (229)
T ss_dssp             CEEEEEEEEECSS-CEEEEEEEEECT---TCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEE---ETTEECTTS
T ss_pred             CEEEEEEEEEeCC-EEEeeeEEEECC---CCEEEEECCCCCcHHHHHHHHhcCcCC---CCCEEE---EccEecccc
Confidence            5899999999986 589999999999   999999999999999999999999999   688775   578777553

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.49  E-value=5.3e-15  Score=131.73  Aligned_cols=67  Identities=16%  Similarity=0.253  Sum_probs=61.0

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .|+++||+++||+..+|+|+||++.+   |++++|+||||||||||+++|+|++.|   ++|.++   ++|.++..
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~---GEi~~iiG~sGsGKSTLl~~i~Gl~~p---~~G~I~---~~G~~i~~   68 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARA---GDVISIIGSSGSGKSTFLRCINFLEKP---SEGAII---VNGQNINL   68 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEECCE
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcC---CCEEEEECCCCCcHHHHHHHHHcCccC---CCCCEE---ECCEEecc
Confidence            48999999999999999999999999   999999999999999999999999998   688775   57777643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.5e-13  Score=115.50  Aligned_cols=170  Identities=13%  Similarity=0.111  Sum_probs=96.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCch----hhhhhhhchhhhhhhHHH----HHHHhhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSV----AQIFKESGEAYFREYESK----ALQKLSL  163 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i----~~~~~~~g~~~fr~~e~~----~l~~l~~  163 (287)
                      -.+|+|+||+||||||+++.|+..+++.+|++|+++.+..  .+..+    .+++..............    .......
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKA   87 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhhcc
Confidence            5689999999999999999999999999999999986543  22232    222222211111111111    1112223


Q ss_pred             CCCeEEecCCceEeccccHHhh----c-CCcEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118          164 VPQQVVATGGGAVVRPLNWRFM----R-QGITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKER  237 (287)
Q Consensus       164 ~~~~via~ggG~v~~~~~~~~L----~-~g~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~R  237 (287)
                      ....++..|...  ....+..+    . .+.+++|++|.+.+.+|+..++.. .|+-.   ..+.   ...++....+.-
T Consensus        88 ~~~~~vl~g~p~--~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~---~~e~---~~~r~~~y~~~~  159 (196)
T d1ukza_          88 NKHKFLIDGFPR--KMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDD---NIES---IKKRFNTFKETS  159 (196)
T ss_dssp             TCCEEEEETCCC--SHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTC---SHHH---HHHHHHHHHHTT
T ss_pred             CCCceeeeccch--hHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccch---HHHH---HHHHHHHHHHHH
Confidence            334444444321  11112222    2 278999999999999998764311 12111   1111   122232222222


Q ss_pred             H---hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118          238 S---EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL  282 (287)
Q Consensus       238 ~---~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l  282 (287)
                      .   +.|++.+..+.          ||++ .++++|.++|.+.|++.|
T Consensus       160 ~~l~~~y~~~~~~~~----------Id~~-~s~eeV~~~I~~~i~~~L  196 (196)
T d1ukza_         160 MPVIEYFETKSKVVR----------VRCD-RSVEDVYKDVQDAIRDSL  196 (196)
T ss_dssp             HHHHHHHHTTTCEEE----------EECS-SCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCEEE----------EECC-CCHHHHHHHHHHHHHhhC
Confidence            2   35666544332          5776 499999999999998754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.49  E-value=2.6e-13  Score=115.51  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=35.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL  132 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~  132 (287)
                      -.|+|.||+||||||+++.||..++++|+++|.++...
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~   41 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   41 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            46889999999999999999999999999999998754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=5.7e-15  Score=129.47  Aligned_cols=68  Identities=15%  Similarity=0.203  Sum_probs=60.0

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      +|+++||+++|+.    ..+|+|+||++++   |++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++..
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~---Ge~~~iiG~sGsGKSTLl~~i~gl~~p---~sG~I~---~~g~~i~~   71 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKE---GEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVY---IDNIKTND   71 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEECTT
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcC---CCEEEEECCCCCCcchhhHhccCCCCC---CcceeE---ECCEEcCc
Confidence            5899999999952    3489999999999   999999999999999999999999999   788776   57887765


Q ss_pred             h
Q 023118          141 I  141 (287)
Q Consensus       141 ~  141 (287)
                      +
T Consensus        72 ~   72 (230)
T d1l2ta_          72 L   72 (230)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=8.8e-15  Score=129.10  Aligned_cols=67  Identities=16%  Similarity=0.256  Sum_probs=59.7

Q ss_pred             EEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           66 VESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        66 l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      |+++||+++|+  ...+|+|+||++++   |+.++|+|+||||||||+++|+|++.|   +.|.+.   ++|.++.++
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~---Ge~vaIvG~sGsGKSTLl~ll~gl~~p---~~G~I~---i~g~~i~~~   70 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQ---GEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVL---IDGHDLALA   70 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEETTTS
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhcCCC---CCCEEE---ECCEEeccc
Confidence            78999999994  56799999999999   999999999999999999999999999   577765   578887655

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=8.1e-15  Score=129.10  Aligned_cols=65  Identities=28%  Similarity=0.304  Sum_probs=58.9

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV  138 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i  138 (287)
                      .|+++||+++||++++|+|+||++.+   |++++|+||||||||||+++|+|.+.|   ++|.+.   +.|.++
T Consensus         2 aI~v~nl~k~yg~~~vl~~vs~~v~~---Gei~glvG~nGaGKSTLl~~l~G~~~p---~~G~i~---i~G~~i   66 (238)
T d1vpla_           2 AVVVKDLRKRIGKKEILKGISFEIEE---GEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVT---VFGKNV   66 (238)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEET
T ss_pred             CEEEEeEEEEECCEEEEccceeEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEE---ECcEec
Confidence            37899999999999999999999999   999999999999999999999999999   677664   456655

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.48  E-value=5e-13  Score=111.68  Aligned_cols=172  Identities=17%  Similarity=0.199  Sum_probs=93.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCchhhhh---hhhchhhhhhhHHHHH-HHhh--cCCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSVAQIF---KESGEAYFREYESKAL-QKLS--LVPQ  166 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i~~~~---~~~g~~~fr~~e~~~l-~~l~--~~~~  166 (287)
                      |-.|+|+||+||||||+++.||..+++.++++|+++.+.. .+......+   ...|...-.......+ ..+.  ...+
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~~   82 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKN   82 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccccC
Confidence            8889999999999999999999999999999999886542 222222211   1122111111111111 1221  1123


Q ss_pred             eEEecCCce-EeccccHH-hhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh
Q 023118          167 QVVATGGGA-VVRPLNWR-FMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE  239 (287)
Q Consensus       167 ~via~ggG~-v~~~~~~~-~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~  239 (287)
                      .++..|.+. ......+. .+.     -..+++|+++.+.+.+|+..+..     ......+...+-++.+.+.++.-..
T Consensus        83 g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~-----~~d~~~e~i~~R~~~y~~~~~p~~~  157 (190)
T d1ak2a1          83 GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI-----HSDDNKKALKIRLEAYHTQTTPLVE  157 (190)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE-----CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCC-----CCchhhHHHHHHHHHHHHHHHHHHH
Confidence            344444321 11111111 111     14789999999999999986531     1111222221111222222222234


Q ss_pred             hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          240 AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       240 ~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                      .|.+.+...          +||++. +++||.++|++.+.+.
T Consensus       158 ~y~~~~~~~----------~Id~~~-s~eeV~~~I~~~l~k~  188 (190)
T d1ak2a1         158 YYSKRGIHS----------AIDASQ-TPDVVFASILAAFSKA  188 (190)
T ss_dssp             HHHHTTCEE----------EEETTS-CHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCEE----------EEECCC-CHHHHHHHHHHHHHHh
Confidence            566543322          268875 9999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.47  E-value=8.3e-15  Score=125.67  Aligned_cols=67  Identities=21%  Similarity=0.277  Sum_probs=59.9

Q ss_pred             cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .|+++||++.|+ +++|+|+||++++   |++++|+||||||||||+++|+|.+.|   ++|.+.   ++|.++..+
T Consensus         2 ~lev~~ls~~y~-~~vl~~is~~i~~---Gei~~l~G~NGsGKSTLl~~i~gl~~p---~~G~I~---~~g~~i~~~   68 (200)
T d1sgwa_           2 KLEIRDLSVGYD-KPVLERITMTIEK---GNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEII---YNGVPITKV   68 (200)
T ss_dssp             EEEEEEEEEESS-SEEEEEEEEEEET---TCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEGGGG
T ss_pred             eEEEEEEEEEeC-CeEEeceEEEEcC---CCEEEEECCCCChHHHHHHHHhccccc---CCCEEE---ECCEehhHh
Confidence            489999999997 4799999999999   999999999999999999999999999   677775   578777543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=7.6e-15  Score=129.41  Aligned_cols=68  Identities=15%  Similarity=0.190  Sum_probs=60.0

Q ss_pred             cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      +|+++||+++|+.    ..+|+|+||++++   |++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++..
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~---Ge~~~iiG~sGsGKSTLl~~i~Gl~~p---~sG~I~---~~g~~i~~   71 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPA---GQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVL---VDGQELTT   71 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECS---SCEEEEEESTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEECT
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHcCCccc---cCCceE---EcCeEeee
Confidence            5899999999963    3689999999999   999999999999999999999999999   788776   57877754


Q ss_pred             h
Q 023118          141 I  141 (287)
Q Consensus       141 ~  141 (287)
                      .
T Consensus        72 ~   72 (240)
T d3dhwc1          72 L   72 (240)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.47  E-value=9.4e-14  Score=112.14  Aligned_cols=161  Identities=15%  Similarity=0.049  Sum_probs=85.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG  174 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG  174 (287)
                      ..|+|+||+||||||+++.|++.++..++..++.+.....+..........+.........+...........++..+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~   82 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIA   82 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            47999999999999999999999988765444444333222222222111122222222223333333334444443321


Q ss_pred             eEeccccH-Hhh---cCC---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeE
Q 023118          175 AVVRPLNW-RFM---RQG---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADAT  247 (287)
Q Consensus       175 ~v~~~~~~-~~L---~~g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~  247 (287)
                      .......+ ..+   ..+   .++||++|++++.+|+..|+.. .+..     ..+       .+.+++..+.+.....+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-~~~~-----~~~-------~~~~~~~~~~~~~~~~~  149 (176)
T d2bdta1          83 FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD-EQMG-----ERC-------LELVEEFESKGIDERYF  149 (176)
T ss_dssp             CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----C-----GGG-------GHHHHHHHHTTCCTTSE
T ss_pred             ccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCc-hhhh-----HHH-------HHHHHHHHhCCCCCeEE
Confidence            11111111 111   112   4699999999999998876421 2111     111       12222222222222333


Q ss_pred             EeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          248 VSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       248 v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                                  |||++.+|+++.+.|.+.+..
T Consensus       150 ------------id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         150 ------------YNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             ------------EECSSSCGGGHHHHHHHHHHC
T ss_pred             ------------EECCCCCHHHHHHHHHHHHhc
Confidence                        589999999999888777653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-14  Score=129.13  Aligned_cols=68  Identities=22%  Similarity=0.289  Sum_probs=60.6

Q ss_pred             cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .|+++||+++|++   ..+|+|+||++++   |+.++|+||||||||||+++|+|++.|   ++|.+.   ++|.++.++
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~---Ge~vaivG~sGsGKSTLl~li~gl~~p---~~G~I~---i~g~~i~~~   81 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRP---GEVTALVGPNGSGKSTVAALLQNLYQP---TGGQLL---LDGKPLPQY   81 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEGGGB
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcC---CCEEEEECCCCCcHHHHHHHHhcccCC---CcCEEE---ECCEecchh
Confidence            4999999999964   4599999999999   999999999999999999999999999   677765   578887665

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.46  E-value=6.7e-15  Score=129.83  Aligned_cols=68  Identities=16%  Similarity=0.156  Sum_probs=60.1

Q ss_pred             ccEEEcceEEEc--CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~--~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      ..|+++||+++|  |+..+|+|+||++++   |++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++..
T Consensus         2 ~~i~v~nlsk~y~~g~~~aL~~vsl~i~~---Ge~~~iiG~sGsGKSTll~~i~gl~~p---~~G~I~---~~g~~i~~   71 (242)
T d1oxxk2           2 VRIIVKNVSKVFKKGKVVALDNVNINIEN---GERFGILGPSGAGKTTFMRIIAGLDVP---STGELY---FDDRLVAS   71 (242)
T ss_dssp             CCEEEEEEEEEEGGGTEEEEEEEEEEECT---TCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEE---ETTEEEEE
T ss_pred             CEEEEEeEEEEECCCCEEEEeceEEEECC---CCEEEEECCCCCcHHHHHHHHHcCcCC---CCceEE---ECCEEeec
Confidence            358999999999  567899999999999   999999999999999999999999999   677775   56766643

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.45  E-value=2.6e-13  Score=113.50  Aligned_cols=164  Identities=13%  Similarity=0.097  Sum_probs=90.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CC-chhhhhh--hhch----hhhhhhHHHHHHHhhcCCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GT-SVAQIFK--ESGE----AYFREYESKALQKLSLVPQ  166 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~-~i~~~~~--~~g~----~~fr~~e~~~l~~l~~~~~  166 (287)
                      .+|+|+||+||||||+++.|+..+++.++++|.++++... +. ....+..  ..|.    ..................+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   83 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQEN   83 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccccC
Confidence            4699999999999999999999999999999999866531 11 1111110  0110    0000011111111111112


Q ss_pred             eEEecCCceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh
Q 023118          167 QVVATGGGAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY  241 (287)
Q Consensus       167 ~via~ggG~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y  241 (287)
                      .++..|.+.  .......+.     ...+|||++|++.+.+|+..++.  .        +..   ..++...++.-.|+.
T Consensus        84 ~~vid~~~~--~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~--~--------e~~---~~rl~~y~~~~~~l~  148 (189)
T d1zaka1          84 GWLLDGYPR--SYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDT--E--------EKV---KLRLETYYQNIESLL  148 (189)
T ss_dssp             CEEEESCCC--SHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCC--T--------THH---HHHHHHHHHHHHHHH
T ss_pred             cEEeeccch--hhHHHhhhhhcccccchheeechhhhhhhhhccccch--H--------HHH---HHHHHHHHHHHHHHH
Confidence            344444321  111122332     24789999999999999865321  1        111   123333223323332


Q ss_pred             hhC-CeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          242 ANA-DATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       242 ~~a-d~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      ..+ +..+          +||.+ .++++|+++|.+.|...+..
T Consensus       149 ~~y~~~~~----------~Id~~-~~idev~~~I~~~l~~il~~  181 (189)
T d1zaka1         149 STYENIIV----------KVQGD-ATVDAVFAKIDELLGSILEK  181 (189)
T ss_dssp             HTTCCCEE----------EEECS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCEE----------EEECC-CCHHHHHHHHHHHHHHHhhh
Confidence            221 2222          26765 59999999999999988764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.43  E-value=2.4e-14  Score=127.03  Aligned_cols=68  Identities=25%  Similarity=0.406  Sum_probs=60.1

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .|+++||+++|++  ..+|+++||+|++   |++++|+||||||||||+++|+|++.|   +.|.+.   ++|.++.++
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~---Ge~iaivG~sGsGKSTLl~ll~gl~~p---~~G~I~---i~g~~i~~~   82 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPA---GKTVALVGRSGSGKSTIASLITRFYDI---DEGHIL---MDGHDLREY   82 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECT---TCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEE---ETTEETTTB
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcC---CCEEEEECCCCChHHHHHHHHhcccCC---CccEEE---ECCcccchh
Confidence            4999999999964  4699999999999   999999999999999999999999999   577665   578777654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.3e-13  Score=111.76  Aligned_cols=109  Identities=12%  Similarity=0.133  Sum_probs=64.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhhhhhhHHHHHHHhhc--CCCeE
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAYFREYESKALQKLSL--VPQQV  168 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~--~~~~v  168 (287)
                      +|+|+||+||||||+++.|+..+++.++++|+++.+..     .|..+.+++..............+...+..  ..+.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g~   81 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF   81 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccce
Confidence            68999999999999999999999999999999986643     123333333222211111111111111111  11234


Q ss_pred             EecCC-ceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhc
Q 023118          169 VATGG-GAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAV  207 (287)
Q Consensus       169 ia~gg-G~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~  207 (287)
                      +..|. ..+.   ....+.     ...+|||++|++++.+|+..+
T Consensus        82 i~~g~pr~~~---~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~  123 (179)
T d1e4va1          82 LLDGFPRTIP---QADAMKEAGINVDYVLEFDVPDELIVDRIVKD  123 (179)
T ss_dssp             EEESCCCSHH---HHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT
T ss_pred             eecccccchH---HhhhhhhccCCceEEEEeccchhhhhhhhccc
Confidence            44443 2211   112221     267999999999999998754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.41  E-value=1.3e-12  Score=107.63  Aligned_cols=162  Identities=16%  Similarity=0.176  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-----CCchhhhhhhhchhhhhhhHHHHH-HHhhc--CCCe
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-----GTSVAQIFKESGEAYFREYESKAL-QKLSL--VPQQ  167 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-----G~~i~~~~~~~g~~~fr~~e~~~l-~~l~~--~~~~  167 (287)
                      +|+|+||+||||||+++.||..+++.++++|+++.....     |..+.+++. .|...--......+ ..+..  ....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMD-RGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHH-cCCeeccchHHHHHHHHhhchhhhcC
Confidence            589999999999999999999999999999999865431     122222211 11110000111111 11111  1223


Q ss_pred             EEecCCce-EeccccHH-hh-----cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh-
Q 023118          168 VVATGGGA-VVRPLNWR-FM-----RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE-  239 (287)
Q Consensus       168 via~ggG~-v~~~~~~~-~L-----~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~-  239 (287)
                      ++..|... ........ ..     .-..++||+++.+.+.+|+..+.+          .+.   ...++..-.+...| 
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~----------~e~---~~~Rl~~y~~~~~~l  147 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDN----------EAT---VANRLEVNMKQMKPL  147 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCS----------HHH---HHHHHHHHHHHHTHH
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccc----------hHH---HHHHHHHHHHHHHHH
Confidence            44444311 11101111 11     125789999999999999875421          111   12233322222233 


Q ss_pred             --hhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118          240 --AYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       240 --~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~  283 (287)
                        .|++ ..+.+           ||.+. ++++|.++|.+.|....+
T Consensus       148 ~~~y~~~~~~~~-----------Id~~~-~~eeV~~~I~~~L~~l~k  182 (182)
T d1zina1         148 VDFYEQKGYLRN-----------INGEQ-DMEKVFADIRELLGGLAR  182 (182)
T ss_dssp             HHHHHHHTCEEE-----------EECSS-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCEEE-----------EECCC-CHHHHHHHHHHHHHhccC
Confidence              4665 34433           68764 999999999999987653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.5e-14  Score=116.18  Aligned_cols=162  Identities=14%  Similarity=0.049  Sum_probs=80.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCe-EEe
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSVAQIFKESGEAYFREYESKALQKLSLVPQQ-VVA  170 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~-via  170 (287)
                      +|.+|+|+|+|||||||+++.|+..+++.+++++.+...... +......+...+...+.......+......... +.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   97 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            388999999999999999999999999888888776544431 222211122222222222333334444433333 333


Q ss_pred             cCCceEeccccHHhhc-C-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH---hhhh
Q 023118          171 TGGGAVVRPLNWRFMR-Q-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS---EAYA  242 (287)
Q Consensus       171 ~ggG~v~~~~~~~~L~-~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~---~~Y~  242 (287)
                      ...+.......+..+. . .   ..+++..+.....++...     ++......         .....+...+   +.|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~---------~~~~~~~~~~~~~e~~~  163 (195)
T d1x6va3          98 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK-----GLYKKARA---------GEIKGFTGIDSEYEKPE  163 (195)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEECC--------------------------------------------CCCCCS
T ss_pred             cccchHHHHHHHHHHHhccccccccccchhheeeehhhccc-----hhhhhhhh---------hhhhhhhhhccccCCCC
Confidence            3343333333333332 2 1   345566666665555322     11111100         0011112222   2334


Q ss_pred             hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          243 NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       243 ~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      .+|++|            ||+++|++|++++|++.+++
T Consensus       164 ~~dl~I------------dT~~~s~ee~~~~Il~~l~~  189 (195)
T d1x6va3         164 APELVL------------KTDSCDVNDCVQQVVELLQE  189 (195)
T ss_dssp             SCSEEE------------CTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEE------------ECCCCCHHHHHHHHHHHHHH
Confidence            567664            89999999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.39  E-value=3.7e-14  Score=125.98  Aligned_cols=68  Identities=19%  Similarity=0.359  Sum_probs=60.6

Q ss_pred             cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      .|+++||+++|++  ..+|+|+||+|++   |++++|+|+||||||||+++|+|++.|   +.|.+.   ++|.++.++
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~---Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~---i~g~~i~~~   85 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEK---GETVAFVGMSGGGKSTLINLIPRFYDV---TSGQIL---IDGHNIKDF   85 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECT---TCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEE---ETTEEGGGS
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcC---CCEEEEECCCCCcHHHHHHHHHhcCCc---cccccc---cCCEEcccC
Confidence            4999999999964  5699999999999   999999999999999999999999999   577765   578887665

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=2.1e-12  Score=106.91  Aligned_cols=160  Identities=13%  Similarity=0.139  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-----chhhhhhhhchhhhhhhHHHHHHHhhcC---CCe
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-----SVAQIFKESGEAYFREYESKALQKLSLV---PQQ  167 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-----~i~~~~~~~g~~~fr~~e~~~l~~l~~~---~~~  167 (287)
                      +|+|+||+||||||+++.|+..+++.+++.|+++.+.....     .+..++ ..|..........++.+....   ...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYL-DAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHH-HhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            68999999999999999999999999999999886654222     222222 223322223344444443321   223


Q ss_pred             EEecCCceEeccccHHhh---------cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH
Q 023118          168 VVATGGGAVVRPLNWRFM---------RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS  238 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L---------~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~  238 (287)
                      ++..|.+..  ......+         .-.++++|+++.+.+.+|+..++   |.   .+..+..   ..++....+...
T Consensus        81 ~i~d~~p~~--~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~---r~---~~~~~~i---~~rl~~y~~~~~  149 (181)
T d2cdna1          81 FILDGYPRS--VEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---RA---DDTDDVI---LNRMKVYRDETA  149 (181)
T ss_dssp             EEEESCCCS--HHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---CT---TCSHHHH---HHHHHHHHHHTT
T ss_pred             EEecccccc--hhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccc---cc---cchhHHH---HHHHHHHHHHHH
Confidence            444443221  1111121         11468999999999999998764   21   1111111   123333223333


Q ss_pred             hhhhhC--CeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          239 EAYANA--DATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       239 ~~Y~~a--d~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      |+.+.+  .+.           +||++. +++||+++|++.|.
T Consensus       150 ~l~~~y~~~~~-----------~Id~~~-s~eeV~~~I~~~l~  180 (181)
T d2cdna1         150 PLLEYYRDQLK-----------TVDAVG-TMDEVFARALRALG  180 (181)
T ss_dssp             THHHHTTTTEE-----------EEECCS-CHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCeE-----------EEECCC-CHHHHHHHHHHHhC
Confidence            432221  222           268765 99999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.39  E-value=1.2e-11  Score=100.64  Aligned_cols=168  Identities=13%  Similarity=0.104  Sum_probs=85.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcccc-----chhHHHHHh---CCCchhhhhhh---hchhhhhhhHHHHHHHhhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD-----SDKYVEKLM---GGTSVAQIFKE---SGEAYFREYESKALQKLSL  163 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid-----~d~~ie~~~---~G~~i~~~~~~---~g~~~fr~~e~~~l~~l~~  163 (287)
                      +.|+|.|++||||||+++.|+..|+...++     .|+......   ......+.+..   .....+.......+..+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            689999999999999999999887654322     333322211   01111111100   0111111111223333333


Q ss_pred             CCCeEEecCCceEec------cccHHh---hcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118          164 VPQQVVATGGGAVVR------PLNWRF---MRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS  234 (287)
Q Consensus       164 ~~~~via~ggG~v~~------~~~~~~---L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~  234 (287)
                      . ..++..+.+....      ...+..   .....+|||+++++++.+|+..+....|+...    ..   ..+......
T Consensus        82 ~-~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~----~~---~~~~~~~~~  153 (190)
T d1khta_          82 E-SPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDT----AS---TIEQHQFMN  153 (190)
T ss_dssp             T-SCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCC----HH---HHHHHHHHH
T ss_pred             C-CeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccccCCccc----HH---HHHHHHHHH
Confidence            3 3344444332211      111111   12368999999999999998876544343221    11   112222322


Q ss_pred             HHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          235 KERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       235 ~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      ..-.+.|.. .+..+         .+|++.+.++|+++++|++.|+
T Consensus       154 ~~~~~~~~~~~~~~~---------~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         154 RCAAMSYGVLTGATV---------KIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             HHHHHHHHHHHCCEE---------EEEECCTTCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhCCCe---------EEEECCCCCHHHHHHHHHHHhC
Confidence            223334432 12221         1257778899999999998873

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=1.7e-12  Score=107.90  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=89.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-----CCchhhhhhhhchhhhhhhHHHHHHHhh----cCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-----GTSVAQIFKESGEAYFREYESKALQKLS----LVP  165 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-----G~~i~~~~~~~g~~~fr~~e~~~l~~l~----~~~  165 (287)
                      .+|+|+||+||||||+++.||..++..++++|+++.+...     |..+.+++...+..........+...+.    ...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKN   82 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccC
Confidence            4688999999999999999999999999999999866532     2223333333322222222222222322    222


Q ss_pred             CeEEecCCceEeccccH-Hhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHH--
Q 023118          166 QQVVATGGGAVVRPLNW-RFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKER--  237 (287)
Q Consensus       166 ~~via~ggG~v~~~~~~-~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R--  237 (287)
                      ..++...+........+ ..+.     ...+|||+++.+.+.+|+..+.             ..   ..++. .|.+.  
T Consensus        83 g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~-------------~~---~~r~~-~y~~~~~  145 (180)
T d1akya1          83 GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD-------------AL---KKRLA-AYHAQTE  145 (180)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH-------------HH---HHHHH-HHHHHTT
T ss_pred             CEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccc-------------cc---cchHH-HHHHHHH
Confidence            33333223222211111 2222     2568999999999999986421             00   01111 11111  


Q ss_pred             --HhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          238 --SEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       238 --~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                        .+.|++-+..+          +||++. +|++|.++|++.+.+
T Consensus       146 ~v~~~y~~~~~~~----------~Id~~~-~~eeV~~~I~~~l~k  179 (180)
T d1akya1         146 PIVDFYKKTGIWA----------GVDASQ-PPATVWADILNKLGK  179 (180)
T ss_dssp             HHHHHHHHHTCEE----------EEETTS-CHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCEE----------EEECCC-CHHHHHHHHHHHHcc
Confidence              13455422222          268774 999999999988754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.37  E-value=8.2e-12  Score=102.16  Aligned_cols=171  Identities=12%  Similarity=0.069  Sum_probs=83.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcc-----ccchhH-HHHHhCCCch---hhh---hhhhchhhhhhhHHHHHHHh-
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTF-----ADSDKY-VEKLMGGTSV---AQI---FKESGEAYFREYESKALQKL-  161 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~f-----id~d~~-ie~~~~G~~i---~~~---~~~~g~~~fr~~e~~~l~~l-  161 (287)
                      ++|+|.|++||||||+++.|+..|+...     ++.|+. ..........   ...   ........+......+.+.. 
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHHH
Confidence            4688999999999999999999886532     233332 2222211100   000   00011111111111111111 


Q ss_pred             hcCCCeE-EecCCceEec-----cccHHh---hcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHH
Q 023118          162 SLVPQQV-VATGGGAVVR-----PLNWRF---MRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSA  232 (287)
Q Consensus       162 ~~~~~~v-ia~ggG~v~~-----~~~~~~---L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~  232 (287)
                      ......+ +.+.+.....     ......   +....+|||++|++.+.+|+..+..+.|+...   .+.+.+....+.+
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~---~~~~~~~~~~~~~  158 (194)
T d1nksa_          82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYS---DESVILETINFAR  158 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCC---SHHHHHHHHHHHH
T ss_pred             HhCCCcEEEEccCchHHHHHHHHhHHHHHHhhhccccceEEecCHHHHHHHHHHhhhcccccch---HHHHHHHHHHHHH
Confidence            1222333 3333322221     111111   12367899999999999999887654454332   1111111111111


Q ss_pred             HHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          233 LSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       233 l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                      .+......|......+           |++.+.+|+|++++|++.|+
T Consensus       159 ~~~~~~~~~~~~~~~~-----------I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         159 YAATASAVLAGSTVKV-----------IVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             HHHHHHHHHHTCEEEE-----------EECCSSCHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHhCCCeEE-----------EECCCCCHHHHHHHHHHHhC
Confidence            1111112222222332           67888999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=2.1e-12  Score=108.36  Aligned_cols=171  Identities=13%  Similarity=0.171  Sum_probs=95.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-----CCchhhhhhhhchhhhhhhHHHHHHHhh---cCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-----GTSVAQIFKESGEAYFREYESKALQKLS---LVP  165 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-----G~~i~~~~~~~g~~~fr~~e~~~l~~l~---~~~  165 (287)
                      +.+|.|+||+||||||+++.|+..+++.++++|+++.+...     |..+.++......-.-......+.+.+.   ...
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   87 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTS   87 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccccc
Confidence            78999999999999999999999999999999999876542     1222222211111000001111222222   223


Q ss_pred             CeEEecCC-ceEeccccHH-hhc-CCcEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHHHHHHHHHh--
Q 023118          166 QQVVATGG-GAVVRPLNWR-FMR-QGITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALSALSKERSE--  239 (287)
Q Consensus       166 ~~via~gg-G~v~~~~~~~-~L~-~g~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~~l~~~R~~--  239 (287)
                      +.++..|. ..+.....+. .+. ...++++.++++...+|...+.. ..|+-   ...+..   ..++..-.+.-.|  
T Consensus        88 ~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~---d~~e~i---~~R~~~y~~~~~~~~  161 (194)
T d3adka_          88 KGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVD---DNEETI---KKRLETYYKATEPVI  161 (194)
T ss_dssp             SCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCC---CCSTTH---HHHHHHHHHHTHHHH
T ss_pred             ccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCc---chHHHH---HHHHHHHHHHHHHHH
Confidence            33454543 1111111111 112 26789999999999999765321 11221   111222   2333333333333  


Q ss_pred             -hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118          240 -AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY  281 (287)
Q Consensus       240 -~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~  281 (287)
                       .|+..+..+          .||++ .++++|.++|.+.|++.
T Consensus       162 ~~y~~~~~~~----------~Id~~-~s~~eV~~~I~~~i~~l  193 (194)
T d3adka_         162 AFYEKRGIVR----------KVNAE-GSVDDVFSQVCTHLDTL  193 (194)
T ss_dssp             HHHTTTTCEE----------EEECC-SCHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCEE----------EEECC-CCHHHHHHHHHHHHHhc
Confidence             476644332          26877 49999999999998753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.8e-12  Score=105.62  Aligned_cols=165  Identities=14%  Similarity=0.117  Sum_probs=91.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC--CCchh----hhhhhhch----hhhhhhHHHHHHHhh--c
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG--GTSVA----QIFKESGE----AYFREYESKALQKLS--L  163 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~--G~~i~----~~~~~~g~----~~fr~~e~~~l~~l~--~  163 (287)
                      +|+|+||+||||||+++.||..+++.++++|+++.+...  +....    +.+.....    .........+.+...  .
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~   82 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANA   82 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchhhh
Confidence            789999999999999999999999999999999876541  11111    12211110    011111111111111  1


Q ss_pred             CCCeEEecCCceEeccccHHhh----cC----CcEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHH
Q 023118          164 VPQQVVATGGGAVVRPLNWRFM----RQ----GITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALS  234 (287)
Q Consensus       164 ~~~~via~ggG~v~~~~~~~~L----~~----g~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~  234 (287)
                      ....++..|..  ........+    ..    ..+|+++++.+...+|+..|+.. .|+-   ...+..   ..++. .|
T Consensus        83 ~~~~~~~~g~p--r~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~---~~~e~i---~~r~~-~y  153 (194)
T d1teva_          83 QKNKFLIDGFP--RNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSD---DNRESL---EKRIQ-TY  153 (194)
T ss_dssp             TCCEEEEESCC--CSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCS---CCHHHH---HHHHH-HH
T ss_pred             cccceeeccch--hhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCc---cchHHH---HHHHH-HH
Confidence            23344444431  111111222    11    35799999999999999876322 1221   111111   12222 22


Q ss_pred             HH----HHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118          235 KE----RSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK  280 (287)
Q Consensus       235 ~~----R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~  280 (287)
                      .+    ....|++.+..+          .||++ .+++||.++|++.|++
T Consensus       154 ~~~~~~l~~~y~~~~~~~----------~IDa~-~s~eeV~~~I~~il~k  192 (194)
T d1teva_         154 LQSTKPIIDLYEEMGKVK----------KIDAS-KSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHHHHHHHHTTCEE----------EEETT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEE----------EEECC-CCHHHHHHHHHHHHhc
Confidence            22    234577644332          16876 5999999999998875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.28  E-value=3.3e-13  Score=109.51  Aligned_cols=34  Identities=32%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSD  126 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d  126 (287)
                      +|.+|.|+|+|||||||+++.|+..|+..|++.+
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~   38 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV   38 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCch
Confidence            4899999999999999999999999876555443

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=8e-12  Score=105.33  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHH
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEK  131 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~  131 (287)
                      +|+|.||+||||||+++.|+..+++.|+++|+++.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~   40 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV   40 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence            899999999999999999999999999999999865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.23  E-value=6.6e-11  Score=97.92  Aligned_cols=157  Identities=15%  Similarity=0.140  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHH-HHHhhc--CCCe
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKA-LQKLSL--VPQQ  167 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~-l~~l~~--~~~~  167 (287)
                      +|+|+||+||||||+++.||..+++.++++|+++.... .+.+    +.+++. .|...--...... ...+..  ....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~-~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMD-QGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHH-cCCcccCcchhHHHHHhhcccccccc
Confidence            58999999999999999999999999999999876543 1222    222221 2211000011112 222221  1222


Q ss_pred             EEecCCceEeccccHHhh----c-C----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH
Q 023118          168 VVATGGGAVVRPLNWRFM----R-Q----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS  238 (287)
Q Consensus       168 via~ggG~v~~~~~~~~L----~-~----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~  238 (287)
                      ++..|..  .+......+    . .    ..+++|+++.+.+.+|+....   .       .+..   ..++....+...
T Consensus        81 ~vl~g~p--~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~---~-------~e~i---~~R~~~y~~~~~  145 (182)
T d1s3ga1          81 FLLDGFP--RTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADD---N-------PDTV---TNRLEVNMNQTA  145 (182)
T ss_dssp             EEEESCC--CSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTC---S-------HHHH---HHHHHHHHHHHH
T ss_pred             eeeeccc--cchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccc---h-------hHHH---HHHHHHHHHHHH
Confidence            3333321  111122222    1 1    356899999999999976421   1       1111   123332222223


Q ss_pred             ---hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118          239 ---EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ  279 (287)
Q Consensus       239 ---~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~  279 (287)
                         ..|.+.+..+.          ||.+ .++++|.++|.+.|+
T Consensus       146 ~i~~~y~~~~~~~~----------Id~~-~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         146 PLLAFYDSKEVLVN----------INGQ-KDIKDVFKDLDVILQ  178 (182)
T ss_dssp             HHHHHHHTTTCEEE----------EECS-SCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCEEE----------EECC-CCHHHHHHHHHHHHH
Confidence               34665333332          6764 589999988877664

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.1e-11  Score=108.13  Aligned_cols=63  Identities=22%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118           64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ  140 (287)
Q Consensus        64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~  140 (287)
                      .+++++|++++|    +|+++||+|++   |++++|+||||||||||+++|+|.. +   +.|.+.   +.|.++..
T Consensus         2 ~il~~~dv~~~~----~l~~isl~I~~---Gei~~iiG~nGaGKSTLl~~l~Gl~-~---~~G~I~---~~g~~i~~   64 (231)
T d1l7vc_           2 IVMQLQDVAEST----RLGPLSGEVRA---GEILHLVGPNGAGKSTLLARMAGMT-S---GKGSIQ---FAGQPLEA   64 (231)
T ss_dssp             EEEEEEEECCTT----TSCSEEEEEET---TCEEECBCCTTSSHHHHHHHHHTSC-C---CSSEEE---ESSSBGGG
T ss_pred             eEEEEECcccCc----eecCEEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCC-C---CceEEE---ECCEECCc
Confidence            368999998765    69999999999   9999999999999999999999964 4   345553   36776643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.05  E-value=5.1e-11  Score=104.44  Aligned_cols=63  Identities=17%  Similarity=0.276  Sum_probs=52.6

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI  141 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~  141 (287)
                      +++ ++.++||+..+  |+||++.    +++++|+||||||||||+++|+|++.|   ++|.+.   ++|.++..+
T Consensus         3 l~v-~~~k~~g~~~~--~vs~~~~----~e~~~liGpnGaGKSTll~~i~Gl~~p---~~G~I~---~~G~~i~~~   65 (240)
T d2onka1           3 LKV-RAEKRLGNFRL--NVDFEMG----RDYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVR---LNGADITPL   65 (240)
T ss_dssp             EEE-EEEEEETTEEE--EEEEEEC----SSEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEECTTS
T ss_pred             EEE-EEEEEECCEEE--EEEEEeC----CEEEEEECCCCChHHHHHHHHHcCCCC---CceEEE---ECCEECCcC
Confidence            667 67899998765  7999984    579999999999999999999999999   688775   577776543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4.8e-11  Score=106.97  Aligned_cols=55  Identities=27%  Similarity=0.410  Sum_probs=46.5

Q ss_pred             EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      +.+++++  |++.++|+|+||+|++   |++++|+||||||||||+++|+|.+.|   +.|.+
T Consensus        39 i~~~~~~--~~g~pvL~~isl~i~~---Ge~vaivG~nGsGKSTLl~~i~Gl~~p---~~G~I   93 (281)
T d1r0wa_          39 VSFSHLC--LVGNPVLKNINLNIEK---GEMLAITGSTGSGKTSLLMLILGELEA---SEGII   93 (281)
T ss_dssp             -CHHHHH--HTTCEEEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEE
T ss_pred             EEEEEcC--CCCCeEEeCeEEEEcC---CCEEEEECCCCChHHHHHHHHhCCCcC---CCcEE
Confidence            4445544  4667899999999999   999999999999999999999999998   45554

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.00  E-value=1.8e-10  Score=98.54  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc------CCccccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL------DYTFADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l------~~~fid~d~~i  129 (287)
                      |.+|.|.|+|||||||+++.|+..+      ...++|+|.+-
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            8899999999999999999998654      23347888764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.99  E-value=9.7e-10  Score=87.16  Aligned_cols=112  Identities=17%  Similarity=0.290  Sum_probs=65.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHH-hccCCccccchhHHHHHhCCCchhh-hhhhhchhhhhhhHHHHHHHhhcC---CCeEE
Q 023118           95 QCLFLVGMMGSGKTTVGEILS-DALDYTFADSDKYVEKLMGGTSVAQ-IFKESGEAYFREYESKALQKLSLV---PQQVV  169 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La-~~l~~~fid~d~~ie~~~~G~~i~~-~~~~~g~~~fr~~e~~~l~~l~~~---~~~vi  169 (287)
                      +.|+|.|++||||||+++.|. ...+..+++.|++......+..... .+........+......++.....   ...++
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI   82 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            578899999999999999764 5667888999998876653322211 111122222333333344433321   22344


Q ss_pred             ecCCceEeccccHH----hhcC-C---cEEEEecCHHHHHHHHhhcC
Q 023118          170 ATGGGAVVRPLNWR----FMRQ-G---ITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       170 a~ggG~v~~~~~~~----~L~~-g---~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      ..+.+.  .+..+.    .+.. +   .+|||++|++.+.+|+..|+
T Consensus        83 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (152)
T d1ly1a_          83 ISDTNL--NPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (152)
T ss_dssp             ECSCCC--SHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred             cccccC--CHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccC
Confidence            444321  112221    2222 2   57999999999999988764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.2e-09  Score=90.26  Aligned_cols=78  Identities=12%  Similarity=0.020  Sum_probs=50.3

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhh---------hhhCCeEEeccccccccc
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEA---------YANADATVSLLNLAACIG  258 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~---------Y~~ad~~v~~~~~a~~~~  258 (287)
                      .++|||++||+...+|+..++   |+..... ...|   ++.+.+.|++.-..         +...++.           
T Consensus       154 dl~i~Ld~~pe~~~~Ri~~r~---~~~e~~~-~~~y---l~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-----------  215 (241)
T d1p5zb_         154 DGIIYLQATPETCLHRIYLRG---RNEEQGI-PLEY---LEKLHYKHESWLLHRTLKTNFDYLQEVPIL-----------  215 (241)
T ss_dssp             SEEEEEECCHHHHHHHHHHHC---CGGGTTC-CHHH---HHHHHHHHHHHHTTCCCCCSCGGGGGSCEE-----------
T ss_pred             ceeeeeccCHHHHHHHHHhhc---chhhhcC-CHHH---HHHHHHHHHHHHHHhhhhhhHhhcCCCCEE-----------
Confidence            689999999999999998765   3333221 1222   34444444432111         1112333           


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118          259 LKDVLDITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       259 ~idt~~~t~~eva~~i~~~i~~~l~~  284 (287)
                      +||++ .+++++.++|++.|+.+++.
T Consensus       216 ~ID~~-~~ie~v~~~i~~~i~~~l~~  240 (241)
T d1p5zb_         216 TLDVN-EDFKDKYESLVEKVKEFLST  240 (241)
T ss_dssp             EEECC-SCHHHHHHHHHHHHHHHHHT
T ss_pred             EEECC-CCHHHHHHHHHHHHHHHHhc
Confidence            38986 59999999999999988763

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=8.1e-09  Score=86.96  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDIT  266 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t  266 (287)
                      ..+|||++|+++..+|+..|+...+  .. .....|   +..+.+.|.   .++++ ....+           ||++ .+
T Consensus       133 dl~i~Ld~~~e~~~~Ri~~R~~~~~--~~-~~~~~~---~~~v~~~y~---~~~~~~~~~~~-----------IDa~-~~  191 (210)
T d4tmka_         133 DLTLYLDVTPEVGLKRARARGELDR--IE-QESFDF---FNRTRARYL---ELAAQDKSIHT-----------IDAT-QP  191 (210)
T ss_dssp             SEEEEEECCHHHHHHHHHHHSSCCT--TT-TSCHHH---HHHHHHHHH---HHHHTCTTEEE-----------EETT-SC
T ss_pred             ceEEEecchHHHHHHHhhhccccch--hh-hccHHH---HHHHHHHHH---HHHhcCCCEEE-----------EECC-CC
Confidence            6899999999999999988753211  11 111111   233333332   23333 23444           7887 59


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 023118          267 PTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       267 ~~eva~~i~~~i~~~l~~  284 (287)
                      +|+|.++|.+.|+++++.
T Consensus       192 ~e~v~~~I~~~i~~~l~~  209 (210)
T d4tmka_         192 LEAVMDAIRTTVTHWVKE  209 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=5.6e-09  Score=88.12  Aligned_cols=37  Identities=30%  Similarity=0.516  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      .|+|+|+.||||||++++|. .+|++++|+|.+..+.+
T Consensus         4 iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   40 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVV   40 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHH
Confidence            68999999999999999996 58999999999865543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.90  E-value=6.3e-09  Score=86.14  Aligned_cols=36  Identities=31%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEK  131 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~  131 (287)
                      -+|+|.|++||||||+++.|. .+|++++++|.+...
T Consensus         4 ~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~   39 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAAR   39 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHH
Confidence            478999999999999999995 589999999987544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=4.6e-08  Score=83.21  Aligned_cols=77  Identities=12%  Similarity=0.120  Sum_probs=40.8

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh-hh--CCeEEeccccccccccccCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY-AN--ADATVSLLNLAACIGLKDVLD  264 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y-~~--ad~~v~~~~~a~~~~~idt~~  264 (287)
                      .++|||++|++....|...++.     ...++ ..|   ++.+.+.|.+--..+ ..  .++.+           ||+++
T Consensus       125 Dl~i~Ld~~~~~~~~r~~~~~~-----~~~e~-~~~---~~~v~~~Y~~l~~~~~~~~~~~~~i-----------ID~s~  184 (214)
T d1tmka_         125 DLTLFLSTQDVDNNAEKSGFGD-----ERYET-VKF---QEKVKQTFMKLLDKEIRKGDESITI-----------VDVTN  184 (214)
T ss_dssp             SEEEEEECC----------CCS-----STTCC-HHH---HHHHHHHHHHHHHHHHHTTCTTEEE-----------EECTT
T ss_pred             ceehhccccHHHHHHHhcccch-----hhhhh-HHH---HHHHHHHHHHHHHHhhhhCCCcEEE-----------EECCC
Confidence            6899999999888888554321     11111 222   233444443221111 11  34444           79888


Q ss_pred             CCHHHHHHHHHHHHHHHhhh
Q 023118          265 ITPTTIAMEVLVQAQKYLNS  284 (287)
Q Consensus       265 ~t~~eva~~i~~~i~~~l~~  284 (287)
                      .++++|.+.|.+.|++++..
T Consensus       185 ~~~eev~~~I~~~v~~~l~~  204 (214)
T d1tmka_         185 KGIQEVEALIWQIVEPVLST  204 (214)
T ss_dssp             CCHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.4e-08  Score=85.91  Aligned_cols=37  Identities=30%  Similarity=0.485  Sum_probs=32.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM  133 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~  133 (287)
                      +|+|+|+.||||||++++|. .+|++++|+|.+..+.+
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   41 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVV   41 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHH
Confidence            78999999999999999996 67999999999876544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.4e-08  Score=84.81  Aligned_cols=71  Identities=13%  Similarity=0.178  Sum_probs=42.1

Q ss_pred             CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhC--CeEEeccccccccccccCCCC
Q 023118          188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANA--DATVSLLNLAACIGLKDVLDI  265 (287)
Q Consensus       188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~a--d~~v~~~~~a~~~~~idt~~~  265 (287)
                      .++|||++|++...+|+..++.  +    .++ ..|   ++.+.+.|.   .+++++  ++.+           ||++. 
T Consensus       125 Dl~i~Ld~~~e~~~~R~~~~~~--~----~E~-~~~---~~r~~~~Y~---~l~~~~~~~~~~-----------IDa~~-  179 (209)
T d1nn5a_         125 DLVLFLQLQLADAAKRGAFGHE--R----YEN-GAF---QERALRCFH---QLMKDTTLNWKM-----------VDASK-  179 (209)
T ss_dssp             SEEEEEECCHHHHHHC-----C--T----TCS-HHH---HHHHHHHHH---HHTTCTTSCEEE-----------EETTS-
T ss_pred             ceeeeecccHHHHhhhhccccc--c----ccc-HHH---HHHHHHHHH---HHHHhCCCCEEE-----------EECCC-
Confidence            6899999999999999754321  1    111 111   122222222   223222  3343           78875 


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 023118          266 TPTTIAMEVLVQAQKYLN  283 (287)
Q Consensus       266 t~~eva~~i~~~i~~~l~  283 (287)
                      ++++|.++|...+++++.
T Consensus       180 ~~e~V~~~I~~~v~~~l~  197 (209)
T d1nn5a_         180 SIEAVHEDIRVLSEDAIA  197 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999998876

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.83  E-value=5.8e-09  Score=83.85  Aligned_cols=34  Identities=21%  Similarity=0.181  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDK  127 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~  127 (287)
                      -+.|+|+||+|||||||++.||..++.+|+..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~   40 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYG   40 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeeh
Confidence            3689999999999999999999999999987664

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-08  Score=84.94  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTF  122 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~f  122 (287)
                      +|+|.|++||||||+++.|+..++...
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~   30 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNE   30 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchhc
Confidence            689999999999999999999887643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.73  E-value=2.8e-08  Score=81.82  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      |+.|+|+||||||||||.+.|...+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            8899999999999999999998765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=3.6e-08  Score=81.19  Aligned_cols=93  Identities=13%  Similarity=0.079  Sum_probs=59.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG  173 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg  173 (287)
                      -..|.++|++||||||+++.++..+++.+++.|.+...                   ......+-..+......|+....
T Consensus        14 p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~-------------------~~~~~~~~~~l~~g~~vIiD~t~   74 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW-------------------QRCVSSCQAALRQGKRVVIDNTN   74 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH-------------------HHHHHHHHHHHHTTCCEEEESCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH-------------------HHHHHHHHHHHHCCCCceeeCcC
Confidence            57899999999999999999999999999988875410                   01111122233333343443322


Q ss_pred             ceEeccccHHhh----cC-C---cEEEEecCHHHHHHHHhhcC
Q 023118          174 GAVVRPLNWRFM----RQ-G---ITVFLNVPLDALARRIAAVG  208 (287)
Q Consensus       174 G~v~~~~~~~~L----~~-g---~~I~L~~~~e~l~~Ri~~~~  208 (287)
                      .   ....+..+    ++ |   .+|||++|.+.+.+|...|.
T Consensus        75 ~---~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~  114 (172)
T d1yj5a2          75 P---DVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE  114 (172)
T ss_dssp             C---SHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhc
Confidence            2   12222221    21 3   47999999999999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=6.2e-08  Score=80.29  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +.|+|+||+|||||||++.|+..+.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            3589999999999999999987653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.52  E-value=6.2e-08  Score=79.03  Aligned_cols=29  Identities=34%  Similarity=0.314  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      +|+|.|++|||||||++.|+..++...++
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~~~~   52 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQGIS   52 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccccc
Confidence            68899999999999999999877654333

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.49  E-value=2.3e-07  Score=76.96  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|-|+.||||||+++.|++.|
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.7e-06  Score=73.34  Aligned_cols=27  Identities=22%  Similarity=0.275  Sum_probs=24.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      +.|+|-|+-||||||+++.|+..++-.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            689999999999999999999988643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=2.4e-07  Score=77.01  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .|+|+||||||||||++.|+..++
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            489999999999999999988654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.16  E-value=7.2e-06  Score=67.09  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .-.|+|-|+.||||||+++.|++.++-
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            458999999999999999999998854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=8.8e-06  Score=68.46  Aligned_cols=27  Identities=19%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +|..|+|+||||+|||||.+.|....+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            388999999999999999999987643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.13  E-value=3.9e-07  Score=73.37  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      +|+|+||||||||||++.|++.+++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            58999999999999999999999874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.86  E-value=3.5e-05  Score=62.82  Aligned_cols=39  Identities=21%  Similarity=0.411  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcc-----ccchhHHHHHh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTF-----ADSDKYVEKLM  133 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~f-----id~d~~ie~~~  133 (287)
                      ..|+++|+|||||||+++.|+..+++..     ++.|.+.....
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~   46 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV   46 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhc
Confidence            4689999999999999999998776543     45676655544

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.76  E-value=7.3e-06  Score=69.75  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcc--ccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTF--ADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~f--id~d~~i  129 (287)
                      ...|.|.||+||||||+++.||+.++..|  +++|.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~   69 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   69 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH
Confidence            35688999999999999999999997766  6676664

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.68  E-value=1.9e-05  Score=69.99  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=25.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYV  129 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~i  129 (287)
                      -+|+|.|+|||||||+++.|...+     .+..++.|.+.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            489999999999999999988765     33478888773

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.1e-05  Score=63.65  Aligned_cols=24  Identities=38%  Similarity=0.342  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +|+|+|++|||||||++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999997654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.2e-05  Score=63.58  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ++|+|+||+|+|||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4799999999999999999998773

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=8.1e-05  Score=66.41  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=27.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC-----C--ccccchhH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD-----Y--TFADSDKY  128 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~-----~--~fid~d~~  128 (287)
                      -+|+|.|++||||||+++.|...|.     +  ..+..|.+
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            3899999999999999999998874     2  23566766

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.54  E-value=2.6e-05  Score=65.84  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=32.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcccc-chhHHHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD-SDKYVEK  131 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid-~d~~ie~  131 (287)
                      .+|+|.|+.||||||+++.|+..+|+..+| +|.+...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~   39 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHH
Confidence            479999999999999999999999999999 5666433

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.52  E-value=3.3e-05  Score=72.31  Aligned_cols=49  Identities=24%  Similarity=0.441  Sum_probs=37.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcccc--chhHHHHHhCCCchhhhhh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD--SDKYVEKLMGGTSVAQIFK  143 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid--~d~~ie~~~~G~~i~~~~~  143 (287)
                      .+|.++||+|||||-|++.||+.++.||+-  +-.+-+.=+-|.++..++.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~DVesii~  100 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIR  100 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecchhHHHH
Confidence            589999999999999999999999999954  4455444345778777644

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.46  E-value=0.00041  Score=62.26  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      -.|+|-|+-|+||||+++.|+..++
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            4699999999999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=2.9e-05  Score=65.33  Aligned_cols=30  Identities=30%  Similarity=0.451  Sum_probs=26.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..+.|.||+|+||||++++||..+++.|+.
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            368899999999999999999999988753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.32  E-value=3.9e-05  Score=64.64  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSD  126 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d  126 (287)
                      ..+.+.||+|+||||+++++|+.++++|....
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~   67 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS   67 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence            46889999999999999999999999875433

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=4.2e-05  Score=67.90  Aligned_cols=31  Identities=23%  Similarity=0.450  Sum_probs=27.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      +..+.++||+|||||.|+|.||+.++.+|+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~   79 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIK   79 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccchhc
Confidence            5678899999999999999999999887643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.00019  Score=55.37  Aligned_cols=25  Identities=12%  Similarity=0.190  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      |=.|++.|.+|+|||||++.|.-.+
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7789999999999999999985444

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.30  E-value=5.1e-05  Score=60.46  Aligned_cols=26  Identities=35%  Similarity=0.226  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +.|+|+|++|||||||+..|+..|..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999998877654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.27  E-value=5.9e-05  Score=64.89  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSD  126 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d  126 (287)
                      ..|.|.||+|||||++++.||..++.+|+..+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            46889999999999999999999999987543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=97.22  E-value=0.0032  Score=56.26  Aligned_cols=25  Identities=32%  Similarity=0.608  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|+|-|+-|+||||+++.|+..++.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhcc
Confidence            6999999999999999999998765

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=8.6e-05  Score=62.57  Aligned_cols=30  Identities=30%  Similarity=0.454  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA  123 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi  123 (287)
                      ...+.|.||+|+||||++++||..++..++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            357999999999999999999999987764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=7.9e-05  Score=64.61  Aligned_cols=36  Identities=22%  Similarity=0.468  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcc--ccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTF--ADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~f--id~d~~i  129 (287)
                      ...+.|.||+|||||++++.||..++.+|  ++...++
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~   82 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV   82 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhh
Confidence            45789999999999999999999999988  4454443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.00012  Score=63.05  Aligned_cols=35  Identities=26%  Similarity=0.464  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcccc--chhHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD--SDKYV  129 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid--~d~~i  129 (287)
                      ..+.|.||+|||||++++.||..++.+|+.  +..++
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~   79 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV   79 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhh
Confidence            468999999999999999999999999954  44554

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00015  Score=59.06  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+.|+|+||||+|||||.+.|....
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            3679999999999999999988654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=97.07  E-value=0.0013  Score=58.97  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      -+|+|-|+-|+||||+++.|+..+..
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46999999999999999999998865

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.06  E-value=0.015  Score=43.75  Aligned_cols=144  Identities=18%  Similarity=0.237  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecC---
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATG---  172 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~g---  172 (287)
                      .|.+-||..|=|||++..|+..+.++.+.+..+--...            |.+.    -.+-..+++..++.++.--   
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfelaks------------gnek----lfehfnkladednviidrfvys   65 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS------------GNEK----LFEHFNKLADEDNVIIDRFVYS   65 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHHHH------------CHHH----HHHHHHHHTTCCSEEEESCHHH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhhhc------------cCHH----HHHHHHhhccccceeeehhhhh
Confidence            47789999999999999999999998766554421111            2111    1122344555554433321   


Q ss_pred             ---------CceEeccccHHhh-----cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH
Q 023118          173 ---------GGAVVRPLNWRFM-----RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS  238 (287)
Q Consensus       173 ---------gG~v~~~~~~~~L-----~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~  238 (287)
                               .-.+..+.....+     .+..+|||.++|..+.+|+.-+++.+   ..+.       ..+.+.++|.   
T Consensus        66 nlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdey---iegk-------didsilelyr---  132 (164)
T d2axpa1          66 NLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEY---IEGK-------DIDSILELYR---  132 (164)
T ss_dssp             HHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSS---CCSS-------HHHHHHHHHH---
T ss_pred             hhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccc---cccC-------CHHHHHHHHH---
Confidence                     0111222111111     13678999999999999999877532   2221       1233444432   


Q ss_pred             hhhhhCCeEE-eccccccccccccCCCCCHHHHHHHHHHHH
Q 023118          239 EAYANADATV-SLLNLAACIGLKDVLDITPTTIAMEVLVQA  278 (287)
Q Consensus       239 ~~Y~~ad~~v-~~~~~a~~~~~idt~~~t~~eva~~i~~~i  278 (287)
                      +.-.+|.+.. +          -||..++.+|++..|+=.+
T Consensus       133 evmsnaglhtys----------wdtgqwssdeiakdiiflv  163 (164)
T d2axpa1         133 EVMSNAGLHTYS----------WDTGQWSSDEIAKDIIFLV  163 (164)
T ss_dssp             HHHHTCSSCEEE----------EETTTSCHHHHHHHHHHHH
T ss_pred             HHHhcCCceeee----------cccCCcchHHhhhheeEee
Confidence            2333444322 1          4899999999999887554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.00014  Score=61.95  Aligned_cols=30  Identities=23%  Similarity=0.462  Sum_probs=26.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           91 CLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        91 ~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|+|+..+++|+||+|||||++.|.+....
T Consensus        92 ~l~~kt~~~~G~SGVGKSTLiN~L~~~~~~  121 (225)
T d1u0la2          92 YLKGKISTMAGLSGVGKSSLLNAINPGLKL  121 (225)
T ss_dssp             HHSSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             HhcCCeEEEECCCCCCHHHHHHhhcchhhh
Confidence            445999999999999999999999876555

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00015  Score=62.87  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSD  126 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d  126 (287)
                      ...|.|.||+|||||++++.||+.++.+|+...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            567999999999999999999999999986554

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00024  Score=61.13  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=28.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSD  126 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d  126 (287)
                      .-+.|.||+|||||++++.+|..++.+|+..+
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            45899999999999999999999999986544

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=1.9e-05  Score=62.87  Aligned_cols=36  Identities=25%  Similarity=0.191  Sum_probs=28.2

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +++.++++.+    ...+|+|+|||||||++.+|.-.+..
T Consensus        15 ~~~~~i~f~~----~~tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          15 FFARTFDLDE----LVTTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             EEEEEECHHH----HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EeeEEEEcCC----CeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3455566665    47889999999999999999876654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.78  E-value=0.00032  Score=63.64  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS  125 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~  125 (287)
                      +.++.+.||+|+||||+++.||+.++.+|+..
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            78999999999999999999999999999753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.78  E-value=0.0003  Score=58.39  Aligned_cols=23  Identities=39%  Similarity=0.525  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +|+|+||.|||||||++.|...+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999997543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.78  E-value=0.00034  Score=56.45  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=26.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      |.+|+|.|+.||||||+.|.+++.++..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            8999999999999999999999999884

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=9.1e-05  Score=63.50  Aligned_cols=33  Identities=18%  Similarity=0.353  Sum_probs=25.0

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +.++|+|+..+++|+||+|||||++.|.+....
T Consensus        91 L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~~~  123 (231)
T d1t9ha2          91 IIPHFQDKTTVFAGQSGVGKSSLLNAISPELGL  123 (231)
T ss_dssp             TGGGGTTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred             HHHhhccceEEEECCCCccHHHHHHhhccHhHh
Confidence            344556899999999999999999999775544

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.77  E-value=0.00029  Score=58.69  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .++.|.||+|+||||++++||..+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            46899999999999999999987643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.0006  Score=60.83  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +...+|+|+|||||||++.+|.=.||
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999975444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.70  E-value=0.00044  Score=53.21  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|||||||++.|.+.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.66  E-value=0.00048  Score=57.45  Aligned_cols=29  Identities=17%  Similarity=0.411  Sum_probs=25.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTF  122 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~f  122 (287)
                      +.+++|.||+|+|||||++.++..++..+
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            67999999999999999999988776554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.61  E-value=0.00051  Score=57.30  Aligned_cols=26  Identities=27%  Similarity=0.200  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ..++.|.||+|+||||+++.|+..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            35899999999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00028  Score=58.67  Aligned_cols=26  Identities=35%  Similarity=0.369  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDYT  121 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~~  121 (287)
                      .+.|.||+|+||||++++++..++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhcc
Confidence            48899999999999999999887664

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00063  Score=54.06  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=23.5

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +.+   |+.+.|.||+||||||++--++..
T Consensus        20 i~~---G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IET---GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EET---TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcC---CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            456   999999999999999999888753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.00054  Score=59.07  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ...+|+|||||||||++.+|+-.++.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg~   50 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFGE   50 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            37899999999999999999776654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.00062  Score=52.11  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998874

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.56  E-value=0.00057  Score=55.32  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            6999999999999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.54  E-value=0.00065  Score=52.49  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|.+|||||||++.+.+.
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999988764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.48  E-value=0.00068  Score=56.83  Aligned_cols=25  Identities=36%  Similarity=0.518  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +.+|+++||+|+||||.+--||..+
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999877777644

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00061  Score=60.37  Aligned_cols=29  Identities=34%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFA  123 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fi  123 (287)
                      ..+.++||+|+|||.|++.||..++.+|+
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i   81 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELL   81 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCee
Confidence            46889999999999999999999998885

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.00057  Score=56.58  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+.|.||+|+||||+++.++..+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            48899999999999999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.45  E-value=0.00062  Score=53.48  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-+|+|+|++|+|||||++.|.+.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999988653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00093  Score=51.92  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      |=.|+|+|++++|||||++.|.+.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            447999999999999999999865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.00087  Score=52.99  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.|.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0011  Score=55.71  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+|+++||+|+||||.+--||..+
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            578899999999999888888544

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.001  Score=53.73  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      ..|+|+|++|+|||||++.|.+.--
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~   28 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSV   28 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3799999999999999999987543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.30  E-value=0.001  Score=52.83  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||.+.|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.30  E-value=0.0014  Score=53.47  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |.-+.|.|+||+||||++-.|... |+.|+.-|.+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~   47 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRLIADDRV   47 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeE
Confidence            888999999999999999888764 8888777655

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.27  E-value=0.00089  Score=56.38  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..+|+++||+|+||||.+--||..+
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999877777543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.27  E-value=0.001  Score=59.21  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +..|.|+|+.||||||+++.|.+..++
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCCEEEEeeccccchHHHHHHhhhccc
Confidence            678999999999999999999998866

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.25  E-value=0.0011  Score=51.94  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|++|+|||||++.|.+.
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            36899999999999999998764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.19  E-value=0.00061  Score=57.14  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ++.|.||+|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999999876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0014  Score=53.41  Aligned_cols=23  Identities=30%  Similarity=0.402  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +.|+|+|++|+|||||++.|.+.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            36999999999999999998763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.16  E-value=0.00075  Score=54.01  Aligned_cols=23  Identities=35%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+|+|++++|||||++.|.+.-
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEEC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999997643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.00098  Score=55.63  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+.|.||+|+||||+++.++..+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            58899999999999999999875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0012  Score=54.51  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .+.|.||+|+||||++++++..+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            478999999999999999998754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.07  E-value=0.00088  Score=56.32  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=16.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..+|+++||+|+||||.+--||..+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999877777543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.05  E-value=0.0017  Score=50.96  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .-.|+|+|.+|||||||++.|.+
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999998876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.03  E-value=0.0018  Score=51.52  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||.+.|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.02  E-value=0.00084  Score=59.25  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      |..+.|+|++|+||||+++.+++.|
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhC
Confidence            4579999999999999999999877

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0018  Score=53.02  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=22.7

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      +++   |+.+.|.|++||||||++--++-
T Consensus        31 i~~---G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VET---GSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EES---SSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcC---CeEEEEEcCCCCCHHHHHHHHHH
Confidence            556   99999999999999999987764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.97  E-value=0.0015  Score=59.15  Aligned_cols=30  Identities=37%  Similarity=0.550  Sum_probs=26.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD  124 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid  124 (287)
                      ..+.++||+|||||-|+|.||..++.+|+-
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~~~~ir   98 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLDIPIAI   98 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             cceeeeCCCCccHHHHHHHHHhhcccceee
Confidence            458899999999999999999999877753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.002  Score=50.77  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ..|+|+|.+++|||||++.|.+.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.95  E-value=0.002  Score=51.23  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +=.|+|+|.+|+|||||++.|.+.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999998864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.92  E-value=0.0019  Score=53.99  Aligned_cols=25  Identities=44%  Similarity=0.550  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..+|+++||+|+||||..-.||..+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5678899999999999888887544

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.00094  Score=52.58  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-.|+|+|++++|||||++.|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999988664

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.002  Score=57.52  Aligned_cols=24  Identities=29%  Similarity=0.245  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-+|+|.||+|+|||||...|+..
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHH
Confidence            568999999999999999999754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.84  E-value=0.0024  Score=49.97  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+.+.
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999988653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.81  E-value=0.0026  Score=51.95  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY  128 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~  128 (287)
                      |.-+.|.|+||+||||++-.|.. -|+.++.-|.+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~-~G~~lvaDD~v   48 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAI   48 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH-cCCceecCCeE
Confidence            88899999999999999988865 47777766654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.0014  Score=52.24  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q 023118           97 LFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        97 i~LvG~~GsGKSTl~k~La~~  117 (287)
                      |+|+|.+++|||||++.|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0021  Score=56.41  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc--------CCccccchhH
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL--------DYTFADSDKY  128 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l--------~~~fid~d~~  128 (287)
                      +|+|.|+.|||||||+..|...+        ...+++.|++
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            78899999999999998876543        2344567766

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0031  Score=51.89  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      +++   |..+.|.|++||||||++--++.
T Consensus        34 ip~---G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IES---MAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCS---SEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcC---CEEEEEECCCCCCHHHHHHHHHH
Confidence            556   99999999999999999987763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.70  E-value=0.003  Score=49.78  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+++|.+|+|||||++.+.+.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4899999999999999988653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.003  Score=49.41  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.003  Score=49.71  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|++|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.64  E-value=0.0034  Score=51.86  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=22.3

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      +++   |..+.|.|++||||||++--++.
T Consensus        33 lp~---G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IET---QAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EES---SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccC---CEEEEEEcCCCCCHHHHHHHHHH
Confidence            556   99999999999999999876653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.64  E-value=0.0025  Score=50.14  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .-.|+|+|++|+|||||++.+.+
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999998854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.63  E-value=0.005  Score=49.79  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV  129 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i  129 (287)
                      |.-+.|.|++|+||||++-.|... |+.|+.-|.+.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~   49 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE   49 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEE
Confidence            889999999999999999777665 77776666553

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0035  Score=49.54  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|++|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4889999999999999987653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.57  E-value=0.0034  Score=50.16  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      -.|+|+|.+.+|||||++.|.+.-
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHhc
Confidence            369999999999999999998643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.54  E-value=0.011  Score=48.91  Aligned_cols=34  Identities=21%  Similarity=0.491  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHH
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYV  129 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~i  129 (287)
                      .++|.||+|||||.|++.++..+     ...|++...+.
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~   76 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   76 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHH
Confidence            48999999999999999998764     23345555543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.54  E-value=0.0039  Score=51.51  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +++   |..+.|.|++||||||++.-++..
T Consensus        23 i~~---gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFK---DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EES---SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcC---CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            556   999999999999999999877754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.52  E-value=0.0026  Score=56.69  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=26.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhccC--Ccc--ccchhHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDALD--YTF--ADSDKYV  129 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l~--~~f--id~d~~i  129 (287)
                      .++.++||+|||||.|++.||+.++  .+|  +++.+++
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~  162 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL  162 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhh
Confidence            3455689999999999999999875  344  4444544

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0036  Score=49.89  Aligned_cols=21  Identities=38%  Similarity=0.370  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|++|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            489999999999999988864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.51  E-value=0.0035  Score=53.52  Aligned_cols=25  Identities=16%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .-.|+|+|.+|+||||+++.|.|.-
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCC
Confidence            3479999999999999999998754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0039  Score=49.36  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|++|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998765

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.48  E-value=0.003  Score=56.11  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .-+|+|.||+|+|||||...|...
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            567999999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.004  Score=48.75  Aligned_cols=23  Identities=13%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      ...|+|+|.+|+|||||++.+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999998764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.47  E-value=0.0011  Score=51.42  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+++|||||.+.|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.004  Score=48.99  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988763

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0041  Score=48.72  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999987653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.016  Score=47.76  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..++.|+|++|.|||++...||..+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHH
Confidence            4589999999999999999999744

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.41  E-value=0.0047  Score=50.26  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +.+   |+.+.|.|++|+||||++--+|-.
T Consensus        31 l~~---G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          31 LES---QSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EET---TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccC---CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            556   999999999999999999888753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0044  Score=48.49  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999888653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0044  Score=48.59  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0046  Score=48.64  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999999997765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0047  Score=48.23  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+++|.+|+|||||++.+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999987653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.0049  Score=47.95  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0052  Score=47.83  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0052  Score=48.31  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            4889999999999999988664

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.24  E-value=0.0058  Score=49.47  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             eccCCCCcEEEEEcCCCCCHHHHHHHH
Q 023118           88 VASCLDGQCLFLVGMMGSGKTTVGEIL  114 (287)
Q Consensus        88 i~~~l~g~~i~LvG~~GsGKSTl~k~L  114 (287)
                      +++   |+.+.|.|++|+|||+++--+
T Consensus        23 i~~---G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPI---GRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EET---TSEEEEEESTTSSHHHHHHHH
T ss_pred             CcC---CeEEEEEeCCCCCHHHHHHHH
Confidence            567   999999999999999998544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0065  Score=51.37  Aligned_cols=23  Identities=22%  Similarity=0.144  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      +..+.|.|||++||||++|.++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            46789999999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0055  Score=47.95  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0057  Score=47.82  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999887653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.16  E-value=0.0058  Score=47.83  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.15  E-value=0.0058  Score=48.63  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999997765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.006  Score=48.00  Aligned_cols=21  Identities=19%  Similarity=0.438  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0066  Score=47.95  Aligned_cols=22  Identities=32%  Similarity=0.262  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999887653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.0066  Score=48.90  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|++|+|||||++.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            489999999999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0069  Score=47.71  Aligned_cols=21  Identities=24%  Similarity=0.320  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999987754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.99  E-value=0.0074  Score=51.05  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=25.6

Q ss_pred             ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      |+++-.-+.+   |+.++|.|++|+||||++.-++-
T Consensus        25 lD~~~~G~~~---G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          25 INDKTLGARG---GEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             HHHHHCSBCT---TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhcCCCC---CeEEEEEeCCCCCHHHHHHHHHH
Confidence            4333334667   99999999999999999877764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.98  E-value=0.0046  Score=49.04  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .-.|+|+|++|+|||||++.+..
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999997743

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.007  Score=47.52  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|++|+|||||++.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.007  Score=47.76  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            699999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0072  Score=47.79  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.0078  Score=47.10  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999976543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.87  E-value=0.0048  Score=48.60  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      -.|+|+|++|+|||||++.+..
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0076  Score=47.56  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0079  Score=47.82  Aligned_cols=21  Identities=24%  Similarity=0.110  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999988765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0082  Score=47.06  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+++|.+|+|||||++.+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.83  E-value=0.008  Score=51.66  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ...|+|.|+.|.|||||++.+...
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999988653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.74  E-value=0.008  Score=50.54  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      ++.+.|.|||.+||||++|.++-
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhHH
Confidence            45789999999999999997653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0091  Score=46.77  Aligned_cols=21  Identities=38%  Similarity=0.438  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|++|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999997654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.011  Score=49.76  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|..+.|.|++|+||||++-.||..
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            3999999999999999999877653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.63  E-value=0.0097  Score=46.77  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.63  E-value=0.0089  Score=47.54  Aligned_cols=19  Identities=32%  Similarity=0.408  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 023118           96 CLFLVGMMGSGKTTVGEIL  114 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~L  114 (287)
                      .|+|+|.+|+|||||++.+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999988

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.01  Score=46.34  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.0057  Score=48.24  Aligned_cols=21  Identities=43%  Similarity=0.469  Sum_probs=9.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0057  Score=48.22  Aligned_cols=20  Identities=45%  Similarity=0.390  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 023118           96 CLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La  115 (287)
                      .|+|+|++|+|||||++.+.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            58999999999999988654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.48  E-value=0.0064  Score=53.60  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      ..+.++||+|+|||.+++.||..+
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHHh
Confidence            367899999999999999999987

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.46  E-value=0.011  Score=46.32  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.0094  Score=48.99  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .+.|.||+|+||||+++.+|..+-
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcc
Confidence            588999999999999999998763

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.0095  Score=49.73  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      .+.|.||+|+||||++++++..+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcC
Confidence            4789999999999999999987754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.011  Score=47.05  Aligned_cols=21  Identities=24%  Similarity=0.150  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999988764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.01  Score=49.51  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ++.|.|+-|||||||++.|...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999988764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.011  Score=51.03  Aligned_cols=24  Identities=38%  Similarity=0.399  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ..++.|||++|+|||++.+.||..
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999975

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.013  Score=46.79  Aligned_cols=21  Identities=24%  Similarity=0.110  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999877654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.14  E-value=0.014  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .|+|+|.+|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999987654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.013  Score=53.26  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+|+|.+|+|||||++.|.|.
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999873

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.014  Score=50.91  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +|++++|+|++|+|||||+..|+...
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999998743

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.98  E-value=0.014  Score=48.09  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La  115 (287)
                      -.|.|+|.+|+|||||++.+.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.016  Score=46.06  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -.|+++|.+|+|||||++.+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999976553

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.76  E-value=0.018  Score=47.75  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -+|+|+|.+.+|||||++.|.+.
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            36999999999999999988764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.58  E-value=0.018  Score=52.19  Aligned_cols=27  Identities=26%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      ...|.|.||.||||||.+..+...+..
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            668999999999999999998887644

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.48  E-value=0.022  Score=49.26  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +-.++|||.+-+|||||++.|.+.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            567999999999999999999864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.30  E-value=0.023  Score=44.51  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|..|+|||||++.+...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999987543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.24  E-value=0.025  Score=44.48  Aligned_cols=22  Identities=32%  Similarity=0.298  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|..|+|||||++.+..-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.88  E-value=0.032  Score=43.25  Aligned_cols=21  Identities=38%  Similarity=0.420  Sum_probs=17.1

Q ss_pred             CcEEEEEcCCCCCHHH-HHHHH
Q 023118           94 GQCLFLVGMMGSGKTT-VGEIL  114 (287)
Q Consensus        94 g~~i~LvG~~GsGKST-l~k~L  114 (287)
                      |..-.++|||.||||| |++.+
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHH
Confidence            6677899999999999 55544

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.81  E-value=0.02  Score=48.93  Aligned_cols=18  Identities=39%  Similarity=0.403  Sum_probs=14.8

Q ss_pred             CcEEEEEcCCCCCHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~  111 (287)
                      +..+.|.|++||||||++
T Consensus        24 ~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SSCEEEEECTTSCHHHHH
T ss_pred             CCCEEEEecCCccHHHHH
Confidence            345789999999999865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.79  E-value=0.026  Score=48.88  Aligned_cols=22  Identities=23%  Similarity=0.101  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      .|+|+|.+-+|||||++.|.+.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999775

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.75  E-value=0.033  Score=47.57  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +-.|+|||.+-+|||||.+.|.+.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            357999999999999999999965

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.53  E-value=0.041  Score=44.09  Aligned_cols=23  Identities=30%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +|+|+|...+|||||+..|.+..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhh
Confidence            58999999999999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.50  E-value=0.034  Score=47.74  Aligned_cols=22  Identities=50%  Similarity=0.587  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHh
Q 023118           95 QCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      ++|+|+|..|+|||||...|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Confidence            4799999999999999998853

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.042  Score=47.01  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      |..+-|.||+||||||++-.++..
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHH
Confidence            899999999999999998776653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.31  E-value=0.028  Score=46.02  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 023118           96 CLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~  116 (287)
                      +|+|+|..++|||||...|..
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            699999999999999998854

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.09  E-value=0.028  Score=47.43  Aligned_cols=17  Identities=35%  Similarity=0.317  Sum_probs=14.2

Q ss_pred             cEEEEEcCCCCCHHHHH
Q 023118           95 QCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~  111 (287)
                      ..+.|+|++||||||++
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            45789999999999864

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.00  E-value=0.041  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ++|+|+|..|+|||||...|.-.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            57999999999999999998543

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.038  Score=49.38  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      ..+++|+|++|||||++++.|.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            4689999999999999986443

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.041  Score=47.37  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .+|+|+||.++|||||++.|.+..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            368899999999999999998754

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.65  E-value=0.054  Score=46.80  Aligned_cols=29  Identities=31%  Similarity=0.252  Sum_probs=24.4

Q ss_pred             eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +.+..   |++++|+|++|+|||||+..++..
T Consensus        63 ~pigk---GQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          63 APYAK---GGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             SCEET---TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccccC---CCEEEeeCCCCCCHHHHHHHHHHH
Confidence            34455   999999999999999998888754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.48  E-value=0.06  Score=46.07  Aligned_cols=27  Identities=22%  Similarity=0.543  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      -.++.|.||.++||||++.+|+..+|-
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            678999999999999999999998854

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.053  Score=41.53  Aligned_cols=22  Identities=36%  Similarity=0.255  Sum_probs=17.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      |..-.|+|||.|||||-+=..+
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~   23 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRV   23 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHHHH
Confidence            8888999999999999544433

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.31  E-value=2  Score=34.14  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      -+.|+|+||   ||+|+.+.|....+
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p   31 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFP   31 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCc
Confidence            467999998   59999999987643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.23  E-value=0.057  Score=46.22  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+++|..++|||||++.|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.042  Score=49.01  Aligned_cols=20  Identities=30%  Similarity=0.292  Sum_probs=17.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEI  113 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~  113 (287)
                      +...+|.||+|+||||+...
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            67899999999999988743

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.23  E-value=0.057  Score=45.93  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 023118           96 CLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .|+++|...||||||++.|.|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998854

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.06  E-value=0.024  Score=41.78  Aligned_cols=19  Identities=32%  Similarity=0.163  Sum_probs=16.6

Q ss_pred             CCcEEEEEcCCCCCHHHHH
Q 023118           93 DGQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~  111 (287)
                      +|+.+.|.+|+|||||+.+
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            3899999999999999654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.00  E-value=0.041  Score=49.76  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      ..++.|||++|+|||++...||..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999888753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.56  E-value=0.056  Score=44.68  Aligned_cols=27  Identities=22%  Similarity=0.407  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      -.+++|.||+++|||+++..|++.++-
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~G   79 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQG   79 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhCC
Confidence            689999999999999999999888753

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.45  E-value=0.077  Score=39.59  Aligned_cols=23  Identities=30%  Similarity=0.127  Sum_probs=18.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      .+...|.+|.|||||+++-.+..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            46778999999999998755443

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.07  Score=42.36  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=21.2

Q ss_pred             cEEEEEcCC-CCCHHHHHHHHHhcc
Q 023118           95 QCLFLVGMM-GSGKTTVGEILSDAL  118 (287)
Q Consensus        95 ~~i~LvG~~-GsGKSTl~k~La~~l  118 (287)
                      ++++|.|.. |+||||+.-.||..|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            579999996 999999998888776

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.24  E-value=0.1  Score=42.06  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      .=+|+|+|.-.+|||||+..|.+..+
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhc
Confidence            44799999999999999999987544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.09  E-value=0.079  Score=44.53  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +..|.|.|++|+||+++++.|...
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHh
Confidence            678999999999999999999754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.90  E-value=0.1  Score=44.61  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      |.++-|.||+||||||++-.++..
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHHH
Confidence            889999999999999998877653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.85  E-value=0.1  Score=44.68  Aligned_cols=23  Identities=35%  Similarity=0.359  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      |..+-|.||+||||||++-.++.
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHH
Confidence            89999999999999999765553

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.07  E-value=0.1  Score=42.37  Aligned_cols=25  Identities=20%  Similarity=0.131  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      +..+.+.||+|+||||+++.++..+
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999855

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.81  E-value=0.061  Score=43.11  Aligned_cols=20  Identities=35%  Similarity=0.482  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHH
Q 023118           93 DGQCLFLVGMMGSGKTTVGE  112 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k  112 (287)
                      +|+.+.|.+|+|||||+++-
T Consensus        39 ~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHHH
Confidence            48889999999999998753

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.64  E-value=0.055  Score=44.56  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118           91 CLDGQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        91 ~l~g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      .|.|+.+.|++|.|+|||+.+-+.+
T Consensus        55 ~l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          55 ILRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HHTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HHCCCCEEEEecCCChHHHHHHHHH
Confidence            3459999999999999998765554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.47  E-value=0.13  Score=39.78  Aligned_cols=22  Identities=32%  Similarity=0.152  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La  115 (287)
                      |..-.|+|||.|||||-+=..+
T Consensus         7 G~l~lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           7 GWVEVIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEEeccccHHHHHHHHHH
Confidence            8888999999999999654443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.81  E-value=0.13  Score=41.65  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhc
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      -+|+++|...+|||||...|.+.
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            46999999999999999988653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.45  E-value=0.13  Score=44.52  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHh
Q 023118           93 DGQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      +|++++|+|++|+|||+|+..++.
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEeecCCCCChHHHHHHHHH
Confidence            399999999999999999876653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=87.44  E-value=0.17  Score=41.75  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|+++|.-.+|||||+..|....+.
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4899999999999999999765554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.75  E-value=0.22  Score=42.09  Aligned_cols=26  Identities=19%  Similarity=0.222  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +-.++|+|.+-+|||||.+.|.+.-.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccce
Confidence            56799999999999999999988643

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.57  E-value=0.13  Score=44.32  Aligned_cols=29  Identities=28%  Similarity=0.242  Sum_probs=23.4

Q ss_pred             eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118           86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDA  117 (287)
Q Consensus        86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~  117 (287)
                      +.+.+   |++++|+|++|+|||+|+..++..
T Consensus        62 ~pig~---GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          62 IPVGR---GQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             SCCBT---TCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ccccC---CceEeeccCCCCChHHHHHHHHhh
Confidence            34455   999999999999999998765443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.06  E-value=0.2  Score=41.05  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|+++|.-++|||||+..|....+.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCC
Confidence            6999999999999999888654443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.28  E-value=0.24  Score=39.65  Aligned_cols=25  Identities=52%  Similarity=0.627  Sum_probs=20.7

Q ss_pred             CcEEEEE-cCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLV-GMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~Lv-G~~GsGKSTl~k~La~~l  118 (287)
                      |++|++. +.-|+||||+.-.||..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            6789998 668899999988887654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=85.24  E-value=0.22  Score=47.94  Aligned_cols=25  Identities=32%  Similarity=0.613  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|.|.|.||||||+-.|.|...|
T Consensus        86 ~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          86 NQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999997765

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.10  E-value=0.22  Score=41.25  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=24.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc---CCc--cccch
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL---DYT--FADSD  126 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l---~~~--fid~d  126 (287)
                      +.|+|.|.=|+||||++-.||..|   |..  .||.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            579999999999999987777655   332  36666

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.03  E-value=0.2  Score=39.37  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=17.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHh
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSD  116 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~  116 (287)
                      +....|++|.|+|||.++-+++.
T Consensus        23 ~~n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          23 ETNCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             GSCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCeEEEeCCCCcHHHHHHHHHH
Confidence            34567889999999987666653

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.78  E-value=0.22  Score=43.48  Aligned_cols=18  Identities=39%  Similarity=0.770  Sum_probs=16.4

Q ss_pred             CcEEEEEcCCCCCHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~  111 (287)
                      |+.-.+.|.||+|||||.
T Consensus        14 ~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             SCEEEEECSTTSSHHHHH
T ss_pred             CCEEEEEccCCCCcccce
Confidence            788889999999999975

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.54  E-value=0.25  Score=41.12  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|+++|..++|||||...|.-.++.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            6999999999999999888755554

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.38  E-value=0.23  Score=43.46  Aligned_cols=18  Identities=39%  Similarity=0.770  Sum_probs=16.2

Q ss_pred             CcEEEEEcCCCCCHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~  111 (287)
                      |+...+.|.||+|||||.
T Consensus        14 ~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CCEEEEEECTTSCHHHHT
T ss_pred             CCEEEEEccCCCCccccc
Confidence            788889999999999974

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.38  E-value=0.25  Score=47.76  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|.|.|.||||||.-.|.+...+
T Consensus       125 nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         125 NQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999998765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.92  E-value=0.27  Score=47.46  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|.|.|.||||||+-.|.|...|
T Consensus        91 ~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          91 DQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999998766

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.43  E-value=0.22  Score=43.89  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHH
Q 023118           95 QCLFLVGMMGSGKTTVGEILS  115 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La  115 (287)
                      +.|+|+|.-|+|||||...|.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHH
Confidence            469999999999999999885

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=83.06  E-value=0.22  Score=41.61  Aligned_cols=17  Identities=24%  Similarity=0.217  Sum_probs=15.7

Q ss_pred             CCcEEEEEcCCCCCHHH
Q 023118           93 DGQCLFLVGMMGSGKTT  109 (287)
Q Consensus        93 ~g~~i~LvG~~GsGKST  109 (287)
                      +|+.+.|.+|.|||||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            48999999999999996

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.03  E-value=0.29  Score=42.86  Aligned_cols=18  Identities=39%  Similarity=0.769  Sum_probs=16.6

Q ss_pred             CcEEEEEcCCCCCHHHHH
Q 023118           94 GQCLFLVGMMGSGKTTVG  111 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~  111 (287)
                      |....+.|.||+|||||.
T Consensus        14 gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CCEEEEECCTTSSHHHHH
T ss_pred             CCEEEEEccCCCCcccce
Confidence            788889999999999986

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.59  E-value=0.34  Score=40.17  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=24.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHhcc---CCc--cccch
Q 023118           95 QCLFLVGMMGSGKTTVGEILSDAL---DYT--FADSD  126 (287)
Q Consensus        95 ~~i~LvG~~GsGKSTl~k~La~~l---~~~--fid~d  126 (287)
                      +.|++.|.-|.||||+.-.||..+   |..  .||+|
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             eEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            688999999999999877777655   332  25666

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.56  E-value=0.32  Score=47.59  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|.|.|.||||||+-.|.|...|
T Consensus       123 ~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         123 NQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999887765

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=82.01  E-value=0.36  Score=46.70  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|.|.|.||||||+-.|.+...|
T Consensus        94 ~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          94 NQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999998765

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=81.38  E-value=0.32  Score=40.52  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118           96 CLFLVGMMGSGKTTVGEILSDALDY  120 (287)
Q Consensus        96 ~i~LvG~~GsGKSTl~k~La~~l~~  120 (287)
                      +|+|+|.-++|||||+..|....+.
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             EEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            5899999999999999888655544

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=80.81  E-value=0.35  Score=47.27  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL  118 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l  118 (287)
                      .++|.|.|.||||||.-.|.|...|
T Consensus       121 nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         121 NQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999999988887765

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.20  E-value=0.67  Score=36.99  Aligned_cols=26  Identities=31%  Similarity=0.240  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDALD  119 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l~  119 (287)
                      +....|..|+|+|||-++-.++..++
T Consensus        85 ~~~~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          85 DKRGCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             TSEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred             CCCcEEEeCCCCCceehHHhHHHHhc
Confidence            56677899999999988766665543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.18  E-value=0.5  Score=38.97  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHhcc---CCc--cccch
Q 023118           94 GQCLFLVGMMGSGKTTVGEILSDAL---DYT--FADSD  126 (287)
Q Consensus        94 g~~i~LvG~~GsGKSTl~k~La~~l---~~~--fid~d  126 (287)
                      .++|++.|.=|+||||+.-.||..+   |..  .+|.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4677788999999999866665544   222  35666