Citrus Sinensis ID: 023129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEHccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavatatflvlqpsfsspfavtpsskltfpnyssprrriglsTVACTYVAlsskgqgafdpeLRSVLELATDSELYELERilfgpsyfspllksftkradvdYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKnlnipcssklstEDLEAEIFLHLLQEYaseesgvfpgswenseasdaqnsLELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDnwlpliwspeqpclqQSRALLVLQQNILV
Flexible Loop (DISEMBL)
MAVATATFlvlqpsfsspfavtpsskLTFPNYSSPRRRIGLSTVACTYVALsskgqgafdpELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADArstlrgwrPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWspeqpclqqSRALLVLQQNILV
Low Complexity Region (SEG)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Disordered region (IsUnstruct)
*****ATFLVLQP*F*************F******RRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS*********************LELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQ****
Disordered Region (DISOPRED)
**********LQPSFSSPFAVTPSS*************************************LRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYV**EQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQ**********************************VQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Disordered Region (DISEMBL)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Disordered Region (DISPRO)
*AVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVAL***GQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
359495113	346	PREDICTED: uncharacterized protein LOC10	0.794	0.658	0.707	4e-92
359495111	354	PREDICTED: uncharacterized protein LOC10	0.794	0.644	0.707	5e-92
18410364	351	uncharacterized protein [Arabidopsis tha	0.867	0.709	0.594	5e-78
334183893	357	uncharacterized protein [Arabidopsis tha	0.881	0.708	0.588	6e-78
224125914	355	predicted protein [Populus trichocarpa]	0.728	0.588	0.683	9e-78
27754453	350	unknown protein [Arabidopsis thaliana]	0.790	0.648	0.628	1e-77
255573521	372	conserved hypothetical protein [Ricinus	0.759	0.586	0.656	5e-77
449439491	343	PREDICTED: uncharacterized protein LOC10	0.832	0.696	0.597	6e-77
297839209	351	hypothetical protein ARALYDRAFT_895206 [	0.881	0.720	0.576	1e-74
11120789	351	unknown protein [Arabidopsis thaliana]	0.857	0.700	0.576	3e-72

>gi|359495113|ref|XP_003634913.1| PREDICTED: uncharacterized protein LOC100243690 isoform 2 [Vitis vinifera]

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/246 (70%), Positives = 195/246 (79%), Gaps = 18/246 (7%)

Query: 28  TFPNY-----SSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERIL 82
           T PNY      SP  +I L  V  ++ ++S  GQGAFDPELR VLELATDSEL+ELERIL
Sbjct: 18  TKPNYPIFRSRSPSTKITLGLVFSSHSSISRNGQGAFDPELRPVLELATDSELFELERIL 77

Query: 83  FGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142
           FGPSYFSPLLKS ++RADVDY MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSY
Sbjct: 78  FGPSYFSPLLKSISRRADVDYAMIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSY 137

Query: 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202
           RNVLL VRK LN+PCSSKLSTEDLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +L
Sbjct: 138 RNVLLGVRKKLNVPCSSKLSTEDLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNL 197

Query: 203 ELGLSQWKVQALAAFNAGAVELKSMMLK-------------LMRNLSGKFFLEAANYQIK 249
           E GLSQWKVQA+AA  AGA EL+S++LK             L R LSGK FLEAANYQIK
Sbjct: 198 EFGLSQWKVQAVAALGAGASELRSIILKGGSMLTLGKIYHLLARRLSGKLFLEAANYQIK 257

Query: 250 KEVLKK 255
            EV+KK
Sbjct: 258 NEVIKK 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495111|ref|XP_002263023.2| PREDICTED: uncharacterized protein LOC100243690 isoform 1 [Vitis vinifera] gi|296088813|emb|CBI38263.3| unnamed protein product [Vitis vinifera]

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 174/246 (70%), Positives = 195/246 (79%), Gaps = 18/246 (7%)

Query: 28  TFPNY-----SSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERIL 82
           T PNY      SP  +I L  V  ++ ++S  GQGAFDPELR VLELATDSEL+ELERIL
Sbjct: 18  TKPNYPIFRSRSPSTKITLGLVFSSHSSISRNGQGAFDPELRPVLELATDSELFELERIL 77

Query: 83  FGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142
           FGPSYFSPLLKS ++RADVDY MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSY
Sbjct: 78  FGPSYFSPLLKSISRRADVDYAMIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSY 137

Query: 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202
           RNVLL VRK LN+PCSSKLSTEDLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +L
Sbjct: 138 RNVLLGVRKKLNVPCSSKLSTEDLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNL 197

Query: 203 ELGLSQWKVQALAAFNAGAVELKSMMLK-------------LMRNLSGKFFLEAANYQIK 249
           E GLSQWKVQA+AA  AGA EL+S++LK             L R LSGK FLEAANYQIK
Sbjct: 198 EFGLSQWKVQAVAALGAGASELRSIILKGGSMLTLGKIYHLLARRLSGKLFLEAANYQIK 257

Query: 250 KEVLKK 255
            EV+KK
Sbjct: 258 NEVIKK 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410364|ref|NP_565065.1| uncharacterized protein [Arabidopsis thaliana] gi|21593462|gb|AAM65429.1| unknown [Arabidopsis thaliana] gi|124301178|gb|ABN04841.1| At1g73470 [Arabidopsis thaliana] gi|332197343|gb|AEE35464.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  296 bits (759), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/271 (59%), Positives = 189/271 (69%), Gaps = 22/271 (8%)

Query: 3   VATATFLVLQPSFSSPFAVTPSSKLTFPNYS--SPR---RRIGLSTVACTYVALSSKGQG 57
           + + +  V+ P    PF    SS L     S   PR   RR  L     +  A  S  + 
Sbjct: 1   MTSVSVAVVAPPHRCPF----SSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEA 56

Query: 58  AFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFI 117
            +DPELR V ELATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI
Sbjct: 57  TYDPELRLVFELATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFI 116

Query: 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177
            +LESRFLFLAADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  
Sbjct: 117 EALESRFLFLAADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDN 176

Query: 178 YASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK------- 230
           ++SE SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LK       
Sbjct: 177 FSSEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGMITF 236

Query: 231 ------LMRNLSGKFFLEAANYQIKKEVLKK 255
                 L + LSGK FLEAANYQI+KE+LKK
Sbjct: 237 AKVYQLLAKKLSGKVFLEAANYQIRKEMLKK 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183893|ref|NP_001185391.1| uncharacterized protein [Arabidopsis thaliana] gi|332197345|gb|AEE35466.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 157/267 (58%), Positives = 190/267 (71%), Gaps = 14/267 (5%)

Query: 3   VATATFLVLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDP 61
           + + +  V+ P    PF+   + +KL+     +  RR  L     +  A  S  +  +DP
Sbjct: 1   MTSVSVAVVAPPHRCPFSSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEATYDP 60

Query: 62  ELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLE 121
           ELR V ELATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI +LE
Sbjct: 61  ELRLVFELATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALE 120

Query: 122 SRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASE 181
           SRFLFLAADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE
Sbjct: 121 SRFLFLAADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSE 180

Query: 182 ESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK----------- 230
            SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LK           
Sbjct: 181 ASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGMITFAKVY 240

Query: 231 --LMRNLSGKFFLEAANYQIKKEVLKK 255
             L + LSGK FLEAANYQI+KE+LKK
Sbjct: 241 QLLAKKLSGKVFLEAANYQIRKEMLKK 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125914|ref|XP_002329748.1| predicted protein [Populus trichocarpa] gi|222870656|gb|EEF07787.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 153/224 (68%), Positives = 179/224 (79%), Gaps = 15/224 (6%)

Query: 47  TYVALSSKGQ-GAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSF-TKRADVDYV 104
           ++ + S K Q G FD +LRSVLELATDSELYELE ILFGPS+FSPLLKS  +KRA++DY 
Sbjct: 46  SHASFSPKSQDGPFDRDLRSVLELATDSELYELENILFGPSHFSPLLKSIASKRAEIDYA 105

Query: 105 MIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 164
           M++QD+EERED I+ LESRF FLAADARSTLRGWRP+YRNVLL VRK L+I CSSKLSTE
Sbjct: 106 MMDQDMEEREDMISCLESRFFFLAADARSTLRGWRPTYRNVLLTVRKKLSIGCSSKLSTE 165

Query: 165 DLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL 224
           DLEAEIFLHLL+EYASE+SG FPG WE S+ SD Q SL +GLSQ KVQALAA   GA +L
Sbjct: 166 DLEAEIFLHLLEEYASEQSGTFPGLWELSKTSDDQGSLGIGLSQEKVQALAAQKLGAADL 225

Query: 225 KSMMLK-------------LMRNLSGKFFLEAANYQIKKEVLKK 255
           +S++LK             L + L+GK FLEAANYQIKKE++KK
Sbjct: 226 QSIILKGGGVFTLTRIYQWLAKKLTGKVFLEAANYQIKKEIIKK 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754453|gb|AAO22674.1| unknown protein [Arabidopsis thaliana]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 152/242 (62%), Positives = 180/242 (74%), Gaps = 15/242 (6%)

Query: 27  LTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPS 86
           L  P     R+++G +  +    A  S  +  +DPELR V ELATDSELYELE+ILFGPS
Sbjct: 27  LKIPRTGWRRKQLGFALASTA--ASESPSEATYDPELRLVFELATDSELYELEKILFGPS 84

Query: 87  YFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVL 146
           YFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLAADARSTLRGWRPSYRNVL
Sbjct: 85  YFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLAADARSTLRGWRPSYRNVL 144

Query: 147 LAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGL 206
           LAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGL
Sbjct: 145 LAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPGMWENSEVSEAEGSLELGL 204

Query: 207 SQWKVQALAAFNAGAVELKSMMLK-------------LMRNLSGKFFLEAANYQIKKEVL 253
           S+WKV+ LAA   GA E++SM+LK             L + LSGK FLEAANYQI+KE+L
Sbjct: 205 SKWKVELLAALQVGATEVQSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEML 264

Query: 254 KK 255
           KK
Sbjct: 265 KK 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573521|ref|XP_002527685.1| conserved hypothetical protein [Ricinus communis] gi|223532916|gb|EEF34684.1| conserved hypothetical protein [Ricinus communis]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/236 (65%), Positives = 173/236 (73%), Gaps = 18/236 (7%)

Query: 34  SPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLK 93
           S  ++  L  + C++ A+S    G  D ELRSVLELATDSELYELERILFGPSYFSPLLK
Sbjct: 56  SSDKKKSLGIIRCSHAAVS----GTLDRELRSVLELATDSELYELERILFGPSYFSPLLK 111

Query: 94  SFTKRA-DVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKN 152
           S T    DV+Y   E D+ ERE FIA+LESRFL+LAADARSTLRGWRPSYRNVLLAVRK 
Sbjct: 112 SITGNGVDVEYSTFEDDMAEREAFIAALESRFLYLAADARSTLRGWRPSYRNVLLAVRKK 171

Query: 153 LNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQ 212
           LNIPCS KL TEDLEAEIFLHLLQ++ SEESG  PG WE SE    Q SLE+GL QW  Q
Sbjct: 172 LNIPCSRKLPTEDLEAEIFLHLLQDHPSEESGTVPGLWEFSEVPSDQGSLEIGLRQWNGQ 231

Query: 213 ALAAFNAGAVELKSMMLK-------------LMRNLSGKFFLEAANYQIKKEVLKK 255
           A+AA   G  EL+S++LK             L R LSGK FLEAANYQIKKEV+KK
Sbjct: 232 AIAAIKLGLAELQSVILKGGGVFTLSRFYQLLARKLSGKVFLEAANYQIKKEVIKK 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439491|ref|XP_004137519.1| PREDICTED: uncharacterized protein LOC101204111 [Cucumis sativus] gi|449517717|ref|XP_004165891.1| PREDICTED: uncharacterized protein LOC101226231 [Cucumis sativus]

 Score =  293 bits (750), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 160/268 (59%), Positives = 190/268 (70%), Gaps = 29/268 (10%)

Query: 1   MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFD 60
           MA A A    LQ +F SP A   S K+ +P +SS  RR G+  V C   +     QG FD
Sbjct: 1   MATALA---ALQFAFLSPAA---SKKIAYPFFSSSGRRNGVQFVGCVNASNPRNAQGGFD 54

Query: 61  PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASL 120
           P+LRSVLELAT+SELYELE+ILFGPSYFSPL+KS T R   DY MIE+DLEER+ FI+SL
Sbjct: 55  PDLRSVLELATNSELYELEQILFGPSYFSPLMKSITNRGQPDYAMIEEDLEERDGFISSL 114

Query: 121 ESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS 180
           ESRFLFLAADARSTLRGWRPSYR+VLL VRK LN+ CS+KLS+EDLEAEIFLHLLQEYAS
Sbjct: 115 ESRFLFLAADARSTLRGWRPSYRDVLLTVRKKLNVLCSTKLSSEDLEAEIFLHLLQEYAS 174

Query: 181 EESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK---------- 230
           EES            ++ + +L+LGL QWKVQ  AA + GA +L+S++L+          
Sbjct: 175 EES---------VRQANLEGTLQLGLDQWKVQTSAATD-GASDLQSLILRGGSLITVVKM 224

Query: 231 ---LMRNLSGKFFLEAANYQIKKEVLKK 255
                R LSGK F EAANYQIKKE++KK
Sbjct: 225 FQVFARTLSGKVFREAANYQIKKEIIKK 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839209|ref|XP_002887486.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata] gi|297333327|gb|EFH63745.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 190/267 (71%), Gaps = 14/267 (5%)

Query: 3   VATATFLVLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDP 61
           + + +  V+ P    PF+   S +KL+     +  RR  L     +  A  S  +  +DP
Sbjct: 1   MTSVSVAVVAPPHRCPFSRHLSLTKLSLQIPRTGWRRKQLGFALASAAASESPSEATYDP 60

Query: 62  ELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLE 121
           ELR V ELATDSELYELE+ILFGPS FSPLLKS   +   D +MI QD++ R+ +I +LE
Sbjct: 61  ELRLVFELATDSELYELEKILFGPSSFSPLLKSIPNKGGRDRLMIGQDIQVRDGYIEALE 120

Query: 122 SRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASE 181
           SRFLFLAADARSTLRGWRPSY+NVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE
Sbjct: 121 SRFLFLAADARSTLRGWRPSYKNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSE 180

Query: 182 ESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK----------- 230
            SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA + GA E++SM+LK           
Sbjct: 181 ASGVFPGLWENSEVSEAKGSLELGLSKWKVELLAALHVGATEVQSMILKGGGVITFAKVY 240

Query: 231 --LMRNLSGKFFLEAANYQIKKEVLKK 255
             L + LSGK FLEAANYQI+KE+LKK
Sbjct: 241 QLLAKKLSGKVFLEAANYQIRKEMLKK 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11120789|gb|AAG30969.1|AC012396_5 unknown protein [Arabidopsis thaliana]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/274 (57%), Positives = 185/274 (67%), Gaps = 28/274 (10%)

Query: 3   VATATFLVLQPSFSSPFAVTPSSKLTFPNYS--SPR---RRIGLSTVACTYVALSSKGQG 57
           + + +  V+ P    PF    SS L     S   PR   RR  L     +  A  S  + 
Sbjct: 1   MTSVSVAVVAPPHRCPF----SSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEA 56

Query: 58  AFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFI 117
            +DPELR V ELATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI
Sbjct: 57  TYDPELRLVFELATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFI 116

Query: 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQ- 176
            +LESRFLFLAADARSTL   RPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  
Sbjct: 117 EALESRFLFLAADARSTL---RPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDN 173

Query: 177 --EYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK---- 230
              Y+ E SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LK    
Sbjct: 174 FSRYSGEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGM 233

Query: 231 ---------LMRNLSGKFFLEAANYQIKKEVLKK 255
                    L + LSGK FLEAANYQI+KE+LKK
Sbjct: 234 ITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKK 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
PRK10236	237	PRK10236, PRK10236, hypothetical protein; Provisio	0.002

>gnl|CDD|182323 PRK10236, PRK10236, hypothetical protein; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 23/102 (22%)

Query: 133 STLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWEN 192
           + LRG    YR +LL V K L +    ++ST ++E ++    L+            +W+ 
Sbjct: 80  NKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN-----------TWKK 128

Query: 193 SEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKLMRN 234
            +    Q            + L A +A   EL+ ++  LM++
Sbjct: 129 MDEEHKQ------------EFLHAVDARVNELEELLPLLMKD 158

Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PRK10236	237	hypothetical protein; Provisional	100.0
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	99.84
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	97.77
PF13099	35	DUF3944: Domain of unknown function (DUF3944)	96.33
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	91.64
PF03250	147	Tropomodulin: Tropomodulin; InterPro: IPR004934 Ac	81.46

>PRK10236 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-35  Score=266.89  Aligned_cols=123  Identities=19%  Similarity=0.315  Sum_probs=111.7

Q ss_pred             hHHHHHHHhhChHHHHHHHHHhc-----CCCCCCcchhhhc-cc---CCcchhHHhhhhHHHHHHHHHHHHHHhccccch
Q 023129           61 PELRSVLELATDSELYELERILF-----GPSYFSPLLKSFT-KR---ADVDYVMIEQDLEEREDFIASLESRFLFLAADA  131 (287)
Q Consensus        61 dELr~~LELATdEEL~eLt~ILf-----~~r~fsPLLkSi~-kr---~~~Dy~~i~~~~~~R~~~i~~IEsRFqflAaD~  131 (287)
                      |++.+||..|++|||.+|++||+     ..|+++.|+++.. ++   +.+||.+          ||+.||+||||||||+
T Consensus         8 D~DL~fL~~cs~edL~~Lv~~Lt~d~dG~~R~te~lt~~~~yk~~~~~~~~~~~----------yw~~Ia~elq~fGgnt   77 (237)
T PRK10236          8 DSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRR----------NWQLIAGELQHFGGDS   77 (237)
T ss_pred             CccHHHHHhCCHHHHHHHHHHHhcCCCCCEeehhhhcccHHHHhhcccchhHHH----------HHHHHHHHHHHhcchH
Confidence            34447999999999999999999     4577888888854 55   8999999          9999999999999999


Q ss_pred             -hhhhcCCCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchhhhhhhhhh
Q 023129          132 -RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELG  205 (287)
Q Consensus       132 -~tvLRG~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~~~e~q~sl~~~  205 (287)
                       +|+|||+||+|||||+|||+||||||++++||++||++||+|++++           +|+||+++| ++++...
T Consensus        78 ~~n~lRG~Gv~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~-----------a~~kms~eE-~~~L~~~  140 (237)
T PRK10236         78 IANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN-----------TWKKMDEEH-KQEFLHA  140 (237)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH-----------HHHHCCHHH-HHHHHHH
Confidence             5799999999999999999999999999999999999999999999           999999999 6666665

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.84  E-value=4.5e-22  Score=178.29  Aligned_cols=111  Identities=15%  Similarity=0.274  Sum_probs=99.0

Q ss_pred             HHHHHHHHHhccccch-hhhhcCCCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCC
Q 023129          116 FIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSE  194 (287)
Q Consensus       116 ~i~~IEsRFqflAaD~-~tvLRG~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~  194 (287)
                      |++.|++++|++++|+ +++|||.|+.||+||+|+|||||+||+++++|.+||++++++|+++           +|+||+
T Consensus        23 y~k~ia~elq~~gg~s~anflr~~G~lyk~il~d~~~~Lk~k~~k~~~tt~Iee~ll~~il~~-----------~l~km~   91 (211)
T COG4735          23 YLKRIAEELQTTGGLSAANFLRDLGQLYKKILCDEKDKLKVKVQKELGTTEIEEPLLLQILRN-----------PLEKML   91 (211)
T ss_pred             HHHhhHHHHHHhccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhccccccchhHHHHHHh-----------HHHHHh
Confidence            8899999999999999 7999999999999999999999999999999999999999999999           999997


Q ss_pred             chhhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHhhhccccc
Q 023129          195 ASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK--LMRNLSGKFFLEAANYQIKKEVLKKVVDNWL  261 (287)
Q Consensus       195 ~~e~q~sl~~~L~~~~~~lla~lk~G~a~~vssvlk--L~k~la~q~al~~A~YQvake~l~~Gg~~~~  261 (287)
                      ..+                       .+++++++.+  +.+ |.+++.+|+|.||+||.+..+|+...+
T Consensus        92 ~~~-----------------------~~e~~~~l~~~~v~~-i~e~~~vl~a~~l~ak~~~~~~S~qla  136 (211)
T COG4735          92 KGG-----------------------KAEAVDSLDAPNVLE-IEEQLQVLIADYLVAKKALGKGSYQLA  136 (211)
T ss_pred             HHH-----------------------HHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            666                       5667777776  444 888888888888888888888776554

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=9.9e-06  Score=73.81  Aligned_cols=62  Identities=24%  Similarity=0.286  Sum_probs=55.7

Q ss_pred             hhhhcCC--CchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchhhhhhhhhh
Q 023129          132 RSTLRGW--RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELG  205 (287)
Q Consensus       132 ~tvLRG~--gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~~~e~q~sl~~~  205 (287)
                      +|++||+  .++||+-++||||++|++|..-+.|-+.|.+.|+|.+++           .|++.+..+ .+.|...
T Consensus         1 lt~~l~~~~~~k~r~g~~~~~ky~k~ia~elq~~gg~s~anflr~~G~-----------lyk~il~d~-~~~Lk~k   64 (211)
T COG4735           1 LTVLLGRSEQFKYREGLIQVCKYLKRIAEELQTTGGLSAANFLRDLGQ-----------LYKKILCDE-KDKLKVK   64 (211)
T ss_pred             CchhhccchhhHHHhhHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH-----------HHHHcCHHH-HHHHHHH
Confidence            4788997  999999999999999999999999999999999999999           999999887 4445444

>PF13099 DUF3944: Domain of unknown function (DUF3944)

Probab=96.33  E-value=0.004  Score=43.03  Aligned_cols=30  Identities=17%  Similarity=0.018  Sum_probs=25.2

Q ss_pred             ChHHHHHHHhhChHHHHHHHHHhcCCCCCC
Q 023129           60 DPELRSVLELATDSELYELERILFGPSYFS   89 (287)
Q Consensus        60 ddELr~~LELATdEEL~eLt~ILf~~r~fs   89 (287)
                      -|+..+||..|++|+|.+|++||+.-+-.+
T Consensus         3 ~D~DLeFL~~cs~edL~~L~~~Lt~dkdG~   32 (35)
T PF13099_consen    3 YDSDLEFLAECSNEDLKDLVDILTHDKDGK   32 (35)
T ss_pred             cCcchHHHHHCCHHHHHHHHHHHhcCCCCC
Confidence            367889999999999999999999655343

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=91.64  E-value=0.41  Score=39.00  Aligned_cols=52  Identities=17%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhccccch-hhhhcCCCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCC
Q 023129          116 FIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSE  194 (287)
Q Consensus       116 ~i~~IEsRFqflAaD~-~tvLRG~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~  194 (287)
                      ..+.+++||++++... +...|                ||..+   .+..++|++||.++.++           ++++|.
T Consensus         5 ~~dt~~~~f~~~~lh~~l~~~R----------------Lk~~~---~~~~~~~q~l~~~~~~d-----------~~~~l~   54 (141)
T PF03981_consen    5 VPDTFAGRFQMLGLHVWLVLRR----------------LKAEG---KEGKELEQALFDKFFED-----------MDERLR   54 (141)
T ss_pred             CccCHHHHHHHHHHHHHHHHHH----------------Hcccc---ccHHHHHHHHHHHHHHH-----------HHHHHH
Confidence            4568999999999988 44444                77777   55699999999999999           888888


Q ss_pred             chh
Q 023129          195 ASD  197 (287)
Q Consensus       195 ~~e  197 (287)
                      +.+
T Consensus        55 ~~g   57 (141)
T PF03981_consen   55 EMG   57 (141)
T ss_pred             Hhc
Confidence            765

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end

Probab=81.46  E-value=2.3  Score=37.56  Aligned_cols=31  Identities=45%  Similarity=0.549  Sum_probs=27.1

Q ss_pred             cCCCCCCChHHHHHHHhhChHHHHHHHHHhc
Q 023129           53 SKGQGAFDPELRSVLELATDSELYELERILF   83 (287)
Q Consensus        53 ~~~~~~~ddELr~~LELATdEEL~eLt~ILf   83 (287)
                      ....-..++||.++|.-|||+||.+|+.||-
T Consensus       109 ~ee~v~ldpeleeaL~~Atd~El~dlAaILG  139 (147)
T PF03250_consen  109 KEEQVTLDPELEEALSNATDAELCDLAAILG  139 (147)
T ss_pred             cccccccCHHHHHHHhcCcHHHHHHHHHHHh
Confidence            3445678899999999999999999999995

To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 50/328 (15%), Positives = 96/328 (29%), Gaps = 91/328 (27%)

Query: 1   MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVA--LSSKGQGA 58
           +A+       +Q      F +     L   N +SP   + +       +    +S+   +
Sbjct: 166 VALDVCLSYKVQCKM--DFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 59  FDPELRSVLELATDSELYELERILFGPSYFSPLL-----------KSF---------TKR 98
            + +LR        S   EL R+L    Y + LL            +F         T+ 
Sbjct: 221 SNIKLR------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 99  ADV-DYV----MIEQDLEEREDFIASLESRFLF----------LAADARST--------- 134
             V D++         L+     +   E + L           L  +  +T         
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 135 --LRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGS--- 189
             +R    ++ N        L      + S   LE   +  +    +     VFP S   
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLS-----VFPPSAHI 387

Query: 190 --------WENSEASDAQNSLELGLSQWKVQALAA--FNAGAVELKSMMLKLMRNLSGKF 239
                   W +   SD    +     +    +L         + + S+ L+L   L  ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 240 FLEA---ANYQIKK-----EVLKKVVDN 259
            L      +Y I K     +++   +D 
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 65/233 (27%)

Query: 91  LLKSFTKRADVDYVMIEQDLEEREDFI--------ASLESRFL---------FLAADARS 133
           + KS   + ++D++++ +D       +          +  +F+         FL +  ++
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 134 TLRGWRPS--------YRNVLLAVRKNLNIPCSSK-LSTEDLEAEIFLHLLQEYASEESG 184
             R   PS         R+ L     N N   +   +S      ++   LL+        
Sbjct: 101 EQRQ--PSMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKN 152

Query: 185 VF----PGSWENSEASDAQNSLELGLSQWKVQALAAF-----NAGAVELKSMMLKLMRNL 235
           V      GS +   A D           +KVQ    F     N         +L++++ L
Sbjct: 153 VLIDGVLGSGKTWVALDV-------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 236 SGKFFLE-------AANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVL 281
             +           ++N +++   ++  +     L+ S           LLVL
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LLKSKPYE-----NCLLVL 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00