Citrus Sinensis ID: 023183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MESLSCVSCPFFVTHHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHcccccccccccccccccEEccccccEEccccccccEEEcHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEEcccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEcccccccccccccccccccccccccccHcHEEccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccEEEcccccccHHHHHccEEEEEEEEEEHcccEEEEEEEEEEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meslscvscpffvthhqpypfagqlSTTRARLRSALKVNAtslvvpllpfninevlvpsesKILHLYEARYLALLEEALVRKKLFVYFVldpisiseyaTEASFAARCGCLVLienverldIGALVSIRGVGRVKIVKffqadpflkgevipmqdttsaspsdvsskVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQwaekqpsldcdeafIPSLAERvsfaafqpvsgstQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ
Flexible Loop (DISEMBL)
MESLSCVSCPFFVTHHQPYPFAGQLSTTRARLRSALKVNAtslvvpllpfnINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALvsirgvgrvKIVKFFqadpflkgevipmqdttsaspsdvsskvLSVKEAVYSLNSLeiklkapkEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAfqpvsgstqsELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ
Low Complexity Region (SEG)
MESLSCVSCPFFVTHHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSESKIlhlyearylalleealVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ
Disordered region (IsUnstruct)
****SCVSCPFFVTHHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVI*****************LSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQ**********************************EFVEGSISMLAAKLAI******
Disordered Region (DISOPRED)
*********PFFVTHHQP**************************VPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVL*************FAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQAL***
Disordered Region (DISEMBL)
MESLSCVSCPFFVTHHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQD************VLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ
Disordered Region (DISPRO)
********CPFFVTHHQPYPFAGQLST******SALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLSCVSCPFFVTHHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKxxxxxxxxxxxxxxxxxxxxxLEFVEGSISMLAAKLAIQALEMQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
359493332	299	PREDICTED: uncharacterized protein LOC10	0.937	0.896	0.648	1e-94
12322943	293	unknown protein [Arabidopsis thaliana]	0.982	0.959	0.595	2e-89
145336413	316	ATP-dependent protease La (LON) domain-c	0.982	0.889	0.595	4e-89
297846584	293	hypothetical protein ARALYDRAFT_891170 [	0.982	0.959	0.588	1e-87
334183038	311	ATP-dependent protease La (LON) domain-c	0.965	0.887	0.578	1e-84
449447625	332	PREDICTED: uncharacterized protein LOC10	0.895	0.771	0.612	4e-84
255561548	313	ATP-dependent peptidase, putative [Ricin	0.727	0.664	0.720	4e-78
296089527	321	unnamed protein product [Vitis vinifera]	0.720	0.641	0.695	7e-78
30693180	210	ATP-dependent protease La (LON) domain-c	0.720	0.980	0.623	2e-70
357152561	438	PREDICTED: uncharacterized protein LOC10	0.832	0.543	0.520	6e-62

>gi|359493332|ref|XP_002264725.2| PREDICTED: uncharacterized protein LOC100244294 [Vitis vinifera]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/273 (64%), Positives = 223/273 (81%), Gaps = 5/273 (1%)

Query: 15  HHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLAL 74
             Q Y F  +  T R    +A   +A S  +PLLPF+IN+VL+PSESK LH YEARYLAL
Sbjct: 31  QFQQYSFRNR-QTKRCGFIAA---HADSSGLPLLPFDINQVLIPSESKTLHFYEARYLAL 86

Query: 75  LEEALVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGR 133
           LEE+L RKK LFV+FVLDP+ + + +  +SFAAR GCLV+IENVERLD+GALVSIRG+GR
Sbjct: 87  LEESLFRKKKLFVHFVLDPVIVGDSSAGSSFAARYGCLVIIENVERLDVGALVSIRGIGR 146

Query: 134 VKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVM 193
           VKI++F QADP+LKG VIPMQD      S++SSKV  +KEA+YSLNSLEIKLKAPKE ++
Sbjct: 147 VKIMEFVQADPYLKGIVIPMQDNIFECESEISSKVSELKEALYSLNSLEIKLKAPKEELL 206

Query: 194 QTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDL 253
           QT +  SL WAEK+PS+DCDEAF+PSLAER+SFAA QPV+GSTQSEL++LQ+EKL+AMD+
Sbjct: 207 QTCIAKSLMWAEKEPSVDCDEAFVPSLAERISFAALQPVTGSTQSELLELQREKLRAMDV 266

Query: 254 RDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ 286
           R+T +R+++SL+ V  SISM+ AKLAIQ+LE+Q
Sbjct: 267 RETLERIDDSLQLVRKSISMVVAKLAIQSLEVQ 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322943|gb|AAG51459.1|AC069160_5 unknown protein [Arabidopsis thaliana]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/287 (59%), Positives = 226/287 (78%), Gaps = 6/287 (2%)

Query: 5   SCVSCPFFVT---HHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSES 61
           S +S  FF T   H    P      +   R R + K+ A SL +PLLPF+++EVLVP+ES
Sbjct: 8   SNLSSSFFPTQNIHRIRIPTTSIPGSFNIRARRS-KIVAKSLDLPLLPFSMSEVLVPTES 66

Query: 62  KILHLYEARYLALLEEALVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERL 120
           K LHLYEARYLALLEE++ RKK +FV+F+LDPISISE ATEASFAAR GCLVLIENVERL
Sbjct: 67  KTLHLYEARYLALLEESMKRKKNMFVHFILDPISISETATEASFAARYGCLVLIENVERL 126

Query: 121 DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLN 179
           D+GALVSIRG GRVKI +F  ADP+L GEV P+QD  +  S ++++SK+  +KE++ +LN
Sbjct: 127 DVGALVSIRGAGRVKISRFLGADPYLSGEVRPIQDRMNYESSNELTSKISQLKESIKNLN 186

Query: 180 SLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSE 239
           SLEIKLKAP ++ +QT ++NSL WAE +P +D DE+F+PSL ER+SF+AFQP+SGST+SE
Sbjct: 187 SLEIKLKAPADSPLQTRLINSLNWAEDEPPVDFDESFVPSLQERLSFSAFQPISGSTKSE 246

Query: 240 LVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ 286
           L +LQQEK+KAMD++DT +RL  S+  ++ +IS +AAKLAIQ+L+++
Sbjct: 247 LSRLQQEKIKAMDMKDTIERLELSMGLIKENISSIAAKLAIQSLDIR 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336413|ref|NP_174767.2| ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] gi|51968886|dbj|BAD43135.1| unknown protein [Arabidopsis thaliana] gi|332193662|gb|AEE31783.1| ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 171/287 (59%), Positives = 226/287 (78%), Gaps = 6/287 (2%)

Query: 5   SCVSCPFFVT---HHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSES 61
           S +S  FF T   H    P      +   R R + K+ A SL +PLLPF+++EVLVP+ES
Sbjct: 31  SNLSSSFFPTQNIHRIRIPTTSIPGSFNIRARRS-KIVAKSLDLPLLPFSMSEVLVPTES 89

Query: 62  KILHLYEARYLALLEEALVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERL 120
           K LHLYEARYLALLEE++ RKK +FV+F+LDPISISE ATEASFAAR GCLVLIENVERL
Sbjct: 90  KTLHLYEARYLALLEESMKRKKNMFVHFILDPISISETATEASFAARYGCLVLIENVERL 149

Query: 121 DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLN 179
           D+GALVSIRG GRVKI +F  ADP+L GEV P+QD  +  S ++++SK+  +KE++ +LN
Sbjct: 150 DVGALVSIRGAGRVKISRFLGADPYLSGEVRPIQDRMNYESSNELTSKISQLKESIKNLN 209

Query: 180 SLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSE 239
           SLEIKLKAP ++ +QT ++NSL WAE +P +D DE+F+PSL ER+SF+AFQP+SGST+SE
Sbjct: 210 SLEIKLKAPADSPLQTRLINSLNWAEDEPPVDFDESFVPSLQERLSFSAFQPISGSTKSE 269

Query: 240 LVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ 286
           L +LQQEK+KAMD++DT +RL  S+  ++ +IS +AAKLAIQ+L+++
Sbjct: 270 LSRLQQEKIKAMDMKDTIERLELSMGLIKENISSIAAKLAIQSLDIR 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846584|ref|XP_002891173.1| hypothetical protein ARALYDRAFT_891170 [Arabidopsis lyrata subsp. lyrata] gi|297337015|gb|EFH67432.1| hypothetical protein ARALYDRAFT_891170 [Arabidopsis lyrata subsp. lyrata]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/287 (58%), Positives = 224/287 (78%), Gaps = 6/287 (2%)

Query: 5   SCVSCPFFVT---HHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSES 61
           S +S  FF T   H    P          R R + K+ A SL +PLLPF+++EVLVP+ES
Sbjct: 8   SNLSSTFFPTKNLHRIRIPATSIPGGFNIRARRS-KIVAKSLNLPLLPFSMSEVLVPTES 66

Query: 62  KILHLYEARYLALLEEALVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERL 120
           K LHLYEARYLALLEE++ RKK +FV+F+LDPISISE ATEASFAAR GCLV IENVERL
Sbjct: 67  KTLHLYEARYLALLEESMKRKKNMFVHFILDPISISETATEASFAARYGCLVFIENVERL 126

Query: 121 DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLN 179
           D+GALVSIRG GRVKI +F  ADP+L GEV P+QD  +  S ++++SK+  +KE++ +LN
Sbjct: 127 DVGALVSIRGAGRVKISRFLGADPYLSGEVRPIQDRVNYESSNELTSKISQLKESIKNLN 186

Query: 180 SLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSE 239
           SLEIKLKAP ++ +QT ++NSL WAE +P+++ DE+F+PSL ER+SF+A QP+SGST+SE
Sbjct: 187 SLEIKLKAPADSPLQTRLINSLNWAEDEPAVEFDESFLPSLQERLSFSALQPISGSTKSE 246

Query: 240 LVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ 286
           L +LQQEKLKAMD++DT +RL  S+  ++ +IS +AAKLAIQ+L+++
Sbjct: 247 LSRLQQEKLKAMDMKDTIERLELSMGLIKENISSIAAKLAIQSLDIR 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183038|ref|NP_001185139.1| ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] gi|332193663|gb|AEE31784.1| ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/287 (57%), Positives = 221/287 (77%), Gaps = 11/287 (3%)

Query: 5   SCVSCPFFVT---HHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSES 61
           S +S  FF T   H    P      +   R R + K+ A SL +PLLPF+++EVLVP+ES
Sbjct: 31  SNLSSSFFPTQNIHRIRIPTTSIPGSFNIRARRS-KIVAKSLDLPLLPFSMSEVLVPTES 89

Query: 62  KILHLYEARYLALLEEALVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERL 120
           K LHLYEARYLALLEE++ RKK +FV+F+LDPISISE ATEASFAAR GCLV     ERL
Sbjct: 90  KTLHLYEARYLALLEESMKRKKNMFVHFILDPISISETATEASFAARYGCLV-----ERL 144

Query: 121 DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLN 179
           D+GALVSIRG GRVKI +F  ADP+L GEV P+QD  +  S ++++SK+  +KE++ +LN
Sbjct: 145 DVGALVSIRGAGRVKISRFLGADPYLSGEVRPIQDRMNYESSNELTSKISQLKESIKNLN 204

Query: 180 SLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSE 239
           SLEIKLKAP ++ +QT ++NSL WAE +P +D DE+F+PSL ER+SF+AFQP+SGST+SE
Sbjct: 205 SLEIKLKAPADSPLQTRLINSLNWAEDEPPVDFDESFVPSLQERLSFSAFQPISGSTKSE 264

Query: 240 LVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ 286
           L +LQQEK+KAMD++DT +RL  S+  ++ +IS +AAKLAIQ+L+++
Sbjct: 265 LSRLQQEKIKAMDMKDTIERLELSMGLIKENISSIAAKLAIQSLDIR 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447625|ref|XP_004141568.1| PREDICTED: uncharacterized protein LOC101210271 [Cucumis sativus] gi|449526802|ref|XP_004170402.1| PREDICTED: uncharacterized LOC101210271 [Cucumis sativus]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 158/258 (61%), Positives = 207/258 (80%), Gaps = 2/258 (0%)

Query: 30  ARLRSALKVNAT-SLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRK-KLFVY 87
           A  R  L V AT SL +PLLPF +N+VLVPSESK LHLYEARYLALL+E+L RK K+FV+
Sbjct: 75  AERRWNLSVYATTSLDLPLLPFGVNDVLVPSESKTLHLYEARYLALLDESLFRKNKVFVH 134

Query: 88  FVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLK 147
           FVLDP+++S+ + E SFAAR  CLV IENVERL +GALV+IRG+GRVKI++  Q DP+L+
Sbjct: 135 FVLDPVAVSDSSREISFAARHACLVFIENVERLQVGALVTIRGIGRVKIIELLQVDPYLR 194

Query: 148 GEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQ 207
           G ++ ++D        +SSKV+ VK  +++LNSLEIKLKAPK+ ++QT +LNSL WAEK 
Sbjct: 195 GTILSVRDNIVQDECLLSSKVMDVKNVLHNLNSLEIKLKAPKDELLQTQILNSLNWAEKG 254

Query: 208 PSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFV 267
             +D D+ F+PSLAERVSFAAFQPVSGST+SEL  LQ +KLKAMD+++T +RLN SL+  
Sbjct: 255 IYVDIDQNFVPSLAERVSFAAFQPVSGSTKSELQSLQLKKLKAMDMKNTHERLNKSLKLT 314

Query: 268 EGSISMLAAKLAIQALEM 285
           + +IS++AAKLAIQ++E+
Sbjct: 315 KENISIVAAKLAIQSIEI 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561548|ref|XP_002521784.1| ATP-dependent peptidase, putative [Ricinus communis] gi|223538997|gb|EEF40594.1| ATP-dependent peptidase, putative [Ricinus communis]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/211 (72%), Positives = 175/211 (82%), Gaps = 3/211 (1%)

Query: 25  LSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRK-K 83
           LS +  R RS    NA  L  PLLPFN +EVLVPSESK LHLYEARYLALLEE+L+RK K
Sbjct: 87  LSWSTIRRRSCFSPNALEL--PLLPFNTSEVLVPSESKTLHLYEARYLALLEESLLRKQK 144

Query: 84  LFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQAD 143
           LFV+FVLDPI IS   TEASFAAR GCLV+IENVERLD+GALVSIRG+GRVKI KF Q+D
Sbjct: 145 LFVHFVLDPILISSSGTEASFAARYGCLVIIENVERLDVGALVSIRGIGRVKIAKFLQSD 204

Query: 144 PFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQW 203
           P+L GEVIP+QD    S S ++SKV +VKEA+ +LNSLEIKLKAPKEA++QT + NSL W
Sbjct: 205 PYLIGEVIPVQDWVLESASKLTSKVAAVKEALCNLNSLEIKLKAPKEALLQTRIANSLSW 264

Query: 204 AEKQPSLDCDEAFIPSLAERVSFAAFQPVSG 234
           AEK+PSL+CD+AFIPSLAERVSF A QP+SG
Sbjct: 265 AEKEPSLECDKAFIPSLAERVSFTALQPISG 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089527|emb|CBI39346.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 144/207 (69%), Positives = 176/207 (85%), Gaps = 1/207 (0%)

Query: 36  LKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKK-LFVYFVLDPIS 94
           +  +A S  +PLLPF+IN+VL+PSESK LH YEARYLALLEE+L RKK LFV+FVLDP+ 
Sbjct: 48  IAAHADSSGLPLLPFDINQVLIPSESKTLHFYEARYLALLEESLFRKKKLFVHFVLDPVI 107

Query: 95  ISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQ 154
           + + +  +SFAAR GCLV+IENVERLD+GALVSIRG+GRVKI++F QADP+LKG VIPMQ
Sbjct: 108 VGDSSAGSSFAARYGCLVIIENVERLDVGALVSIRGIGRVKIMEFVQADPYLKGIVIPMQ 167

Query: 155 DTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDE 214
           D      S++SSKV  +KEA+YSLNSLEIKLKAPKE ++QT +  SL WAEK+PS+DCDE
Sbjct: 168 DNIFECESEISSKVSELKEALYSLNSLEIKLKAPKEELLQTCIAKSLMWAEKEPSVDCDE 227

Query: 215 AFIPSLAERVSFAAFQPVSGSTQSELV 241
           AF+PSLAER+SFAA QPV+GSTQSEL+
Sbjct: 228 AFVPSLAERISFAALQPVTGSTQSELL 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693180|ref|NP_849748.1| ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] gi|42571743|ref|NP_973962.1| ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] gi|45752750|gb|AAS76273.1| At1g35340 [Arabidopsis thaliana] gi|332193660|gb|AEE31781.1| ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] gi|332193661|gb|AEE31782.1| ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/207 (62%), Positives = 174/207 (84%), Gaps = 1/207 (0%)

Query: 81  RKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFF 140
           +K +FV+F+LDPISISE ATEASFAAR GCLVLIENVERLD+GALVSIRG GRVKI +F 
Sbjct: 4   KKNMFVHFILDPISISETATEASFAARYGCLVLIENVERLDVGALVSIRGAGRVKISRFL 63

Query: 141 QADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLN 199
            ADP+L GEV P+QD  +  S ++++SK+  +KE++ +LNSLEIKLKAP ++ +QT ++N
Sbjct: 64  GADPYLSGEVRPIQDRMNYESSNELTSKISQLKESIKNLNSLEIKLKAPADSPLQTRLIN 123

Query: 200 SLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQR 259
           SL WAE +P +D DE+F+PSL ER+SF+AFQP+SGST+SEL +LQQEK+KAMD++DT +R
Sbjct: 124 SLNWAEDEPPVDFDESFVPSLQERLSFSAFQPISGSTKSELSRLQQEKIKAMDMKDTIER 183

Query: 260 LNNSLEFVEGSISMLAAKLAIQALEMQ 286
           L  S+  ++ +IS +AAKLAIQ+L+++
Sbjct: 184 LELSMGLIKENISSIAAKLAIQSLDIR 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357152561|ref|XP_003576160.1| PREDICTED: uncharacterized protein LOC100824626 [Brachypodium distachyon]

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 126/242 (52%), Positives = 178/242 (73%), Gaps = 4/242 (1%)

Query: 43  LVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKK-LFVYFVLDPISISEYATE 101
           L  PLLPF   EVL+PSE K LHLYEARYLALLEEAL R+K   V+FVLDP+  S  +++
Sbjct: 200 LDFPLLPFPPAEVLIPSECKTLHLYEARYLALLEEALYRRKNSLVHFVLDPVLSS--SSK 257

Query: 102 ASFAARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASP 161
            SFA R GCLV IE+V++LD+GALVSIRG+ RV I    Q +P+L+G++ PM D  S   
Sbjct: 258 DSFAVRYGCLVQIESVQKLDLGALVSIRGLCRVNIKNLLQMEPYLRGDISPMMDKFSGG- 316

Query: 162 SDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLA 221
           +++  ++  ++E + +L+SL++KLK P++  +QT + +SL W+EK+   D D  FIP L 
Sbjct: 317 TELGMRISKLREGMCNLHSLQMKLKVPEDEPLQTNIKSSLLWSEKEIFEDYDNEFIPGLP 376

Query: 222 ERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQ 281
           ER+SFAA+Q VSG + +EL+ LQ+ K+KAMDL DT +R+N+ +E+VE +I M+AA+LAIQ
Sbjct: 377 ERLSFAAYQSVSGMSDAELLTLQKYKIKAMDLTDTLERINSGIEYVEHNIGMIAARLAIQ 436

Query: 282 AL 283
            +
Sbjct: 437 NI 438

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2206732	316	AT1G35340 [Arabidopsis thalian	0.982	0.889	0.547	1.2e-72

TAIR|locus:2206732 AT1G35340 [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 157/287 (54%), Positives = 210/287 (73%)

Query:     5 SCVSCPFFVT---HHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSES 61
             S +S  FF T   H    P      +   R R + K+ A SL +PLLPF+++EVLVP+ES
Sbjct:    31 SNLSSSFFPTQNIHRIRIPTTSIPGSFNIRARRS-KIVAKSLDLPLLPFSMSEVLVPTES 89

Query:    62 KIXXXXXXXXXXXXXXXXVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERL 120
             K                  RKK +FV+F+LDPISISE ATEASFAAR GCLVLIENVERL
Sbjct:    90 KTLHLYEARYLALLEESMKRKKNMFVHFILDPISISETATEASFAARYGCLVLIENVERL 149

Query:   121 DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLN 179
             D+GALVSIRG GRVKI +F  ADP+L GEV P+QD  +  S ++++SK+  +KE++ +LN
Sbjct:   150 DVGALVSIRGAGRVKISRFLGADPYLSGEVRPIQDRMNYESSNELTSKISQLKESIKNLN 209

Query:   180 SLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSE 239
             SLEIKLKAP ++ +QT ++NSL WAE +P +D DE+F+PSL ER+SF+AFQP+SGST+SE
Sbjct:   210 SLEIKLKAPADSPLQTRLINSLNWAEDEPPVDFDESFVPSLQERLSFSAFQPISGSTKSE 269

Query:   240 LVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ 286
             L +LQQEK+KAMD++DT +RL  S+  ++ +IS +AAKLAIQ+L+++
Sbjct:   270 LSRLQQEKIKAMDMKDTIERLELSMGLIKENISSIAAKLAIQSLDIR 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      286       270   0.00097  114 3  11 22  0.47    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.91u 0.08s 22.99t   Elapsed:  00:00:02
  Total cpu time:  22.92u 0.08s 23.00t   Elapsed:  00:00:02
  Start:  Sat May 11 15:02:56 2013   End:  Sat May 11 15:02:58 2013

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam02190	191	pfam02190, LON, ATP-dependent protease La (LON) do	2e-13
COG2802	221	COG2802, COG2802, Uncharacterized protein, similar	4e-05

>gnl|CDD|216923 pfam02190, LON, ATP-dependent protease La (LON) domain

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 15/153 (9%)

Query: 44  VVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVL---DPISISEYAT 100
            +PLLP   N VL P     LH++E RY+A +EEAL   + F   ++   DP SI +   
Sbjct: 1   ELPLLPLR-NVVLFPGMVLPLHVFEPRYIAAIEEALESDRPFGLVLVSQKDPPSIDDLY- 58

Query: 101 EASFAARCGCLVLIENVERLDIGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSA 159
                   G L  I  + +L  G L + + G+ R +I++  Q +P+L  EV  + +    
Sbjct: 59  ------EVGTLARIIQIVKLPDGRLKILVEGLERFRILELEQEEPYLVAEVEDLPEEELE 112

Query: 160 SPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAV 192
              +    ++   + +       + L  P E +
Sbjct: 113 ELLEALEALV---KELIEKIKELLPLLLPLELL 142

This domain has been shown to be part of the PUA superfamily. Length = 191

>gnl|CDD|225362 COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 43  LVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEA 102
           L +PL P     VL+P     L+++E RYLA++   L   + F   ++D           
Sbjct: 10  LELPLFPLP-GAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGREVG-GGLP 67

Query: 103 SFAARCGCLVLIENVERLDIG-ALVSIRGVGRVKIVKF-FQADPFLKGEV 150
              +  GCL  I   E L  G  L+ +RG  R ++++     DP+ +  V
Sbjct: 68  PELSDVGCLARITEFEELGDGRYLILVRGGQRFRVLEELADDDPYRRARV 117

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	100.0
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.97
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.97
PF02190	205	LON: ATP-dependent protease La (LON) domain; Inter	99.97
COG2802	221	Uncharacterized protein, similar to the N-terminal	99.96
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	99.53
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.49
smart00464	92	LON Found in ATP-dependent protease La (LON). N-te	99.18
KOG1400	371	consensus Predicted ATP-dependent protease PIL, co	98.32

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=100.00  E-value=4e-33  Score=282.40  Aligned_cols=210  Identities=18%  Similarity=0.228  Sum_probs=179.3

Q ss_pred             CCceeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEee
Q 023183           39 NATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVE  118 (286)
Q Consensus        39 ~~~~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~  118 (286)
                      +....++|+||++ |+|+|||+.+||+||+++|+.|+++|+++++.||++++.+...++  +..+++|+|||+|+|+++.
T Consensus         5 ~~~~~~LPLfPLr-~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~~~~gvv~~k~~~~~~--p~~~dLy~VGtla~I~~~~   81 (784)
T PRK10787          5 RSERIEIPVLPLR-DVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDE--PGVNDLFTVGTVASILQML   81 (784)
T ss_pred             cCCCceEEEEECC-CceeCCCceeeeecCCHHHHHHHHHHHhcCCEEEEEEecCCCCCC--CCcccccCccEEEEEEEee
Confidence            3445589999999 899999999999999999999999999999999999887644332  5567899999999999999


Q ss_pred             EcCCCcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHH
Q 023183          119 RLDIGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYV  197 (286)
Q Consensus       119 ~l~dG~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~  197 (286)
                      +++||++ |+++|.+||+|.++.+.+||+.|+|++++++.. +..+.+++.+.+.+.+.++..+...++.        ++
T Consensus        82 ~l~DG~~~Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~-~~~e~~al~~~ll~~~~~~~~l~~~~~~--------e~  152 (784)
T PRK10787         82 KLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTI-DEREQEVLVRTAISQFEGYIKLNKKIPP--------EV  152 (784)
T ss_pred             ECCCCeEEEEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCC-CchHHHHHHHHHHHHHHHHHHhcccCCH--------HH
Confidence            9999999 999999999999999999999999999988542 2335567778888888888877665543        22


Q ss_pred             HHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023183          198 LNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAK  277 (286)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~  277 (286)
                      .....              ..++|..++|.+|+.+|++      .  ++||+|||+.|+.+|+++++.+|+++++.++++
T Consensus       153 ~~~~~--------------~~ddp~~Lad~iA~~Lpl~------~--~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~  210 (784)
T PRK10787        153 LTSLN--------------SIDDPARLADTIAAHMPLK------L--ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVE  210 (784)
T ss_pred             Hhhhh--------------ccccHHHHHHHHHHHCCCC------H--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            21111              1178899999999999999      8  999999999999999999999999999999999


Q ss_pred             HHHhc
Q 023183          278 LAIQA  282 (286)
Q Consensus       278 ~~I~~  282 (286)
                      ++|++
T Consensus       211 ~~I~~  215 (784)
T PRK10787        211 KRIRN  215 (784)
T ss_pred             HHHHH
Confidence            99964

>TIGR00763 lon ATP-dependent protease La

Probab=99.97  E-value=1.7e-30  Score=264.66  Aligned_cols=205  Identities=20%  Similarity=0.270  Sum_probs=170.5

Q ss_pred             eEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEE-EEEEcCCCcccccccccccccceeEEEEEEeeEcCC--
Q 023183           46 PLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFV-YFVLDPISISEYATEASFAARCGCLVLIENVERLDI--  122 (286)
Q Consensus        46 Pl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~-v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~d--  122 (286)
                      |+||++ ++|+|||+.+||+||+++|+.|+++|+.+++.|+ ++++.+...++  +..+++|+|||+|+|+++.+++|  
T Consensus         1 Pl~PLr-~~VLfPg~~lpL~Ife~r~i~mV~~al~~~~~~~~vv~~k~~~~~~--p~~~~ly~VGt~a~I~~~~~~~d~~   77 (775)
T TIGR00763         1 PLLPLR-RRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEE--PEEDDIYSVGVVAQILEMLPLPSSG   77 (775)
T ss_pred             CeEcCC-CCccCCCcceeEecCCHHHHHHHHHHHhcCCcEEEEEEecCcccCC--CCcccccCCceEEEEEEeccCCCCC
Confidence            899999 8999999999999999999999999999888777 65555433222  55678999999999999999555  


Q ss_pred             -CcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCC-CCchhhhHHHHHHHHHHHHHHhhhh--hcCCchhHHHHHHH
Q 023183          123 -GAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLNSLEI--KLKAPKEAVMQTYV  197 (286)
Q Consensus       123 -G~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~-~~~~~~~a~~~~l~~~l~~~~~l~~--~~~~~~~~~~~~~~  197 (286)
                       |++ |+++|.+||+|.++.+++||+.|+|+++++++. .+..+.+++...+.+.+.++..++.  ..+.        +.
T Consensus        78 dG~~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~~~~~~~~e~~al~~~l~~~~~el~~l~~l~~~~~--------e~  149 (775)
T TIGR00763        78 TATYKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEEPFDKDDEEIKALTREIKETFRELISLSKLFREQP--------AL  149 (775)
T ss_pred             CCeEEEEEEEEEEEEEEEEecCCCcEEEEEEEecCcCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCH--------HH
Confidence             999 999999999999999999999999999987532 2234577888899999999887766  3332        21


Q ss_pred             HHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023183          198 LNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAK  277 (286)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~  277 (286)
                      ......              .++|..++|++|+.++++.     .  ++||+|||+.|+.+|+++++.+|.++++.++++
T Consensus       150 ~~~~~~--------------~~dp~~Lad~ia~~L~l~~-----~--~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~  208 (775)
T TIGR00763       150 LSALED--------------IDEPGRLADFVAASLQLKE-----K--DELQEVLETVNIEKRLKKALELLKKELELLKLQ  208 (775)
T ss_pred             HHHHhc--------------cCCHHHHHHHHHHhcCCCc-----H--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            111110              1788999999999999841     4  999999999999999999999999999999999


Q ss_pred             HHHhc
Q 023183          278 LAIQA  282 (286)
Q Consensus       278 ~~I~~  282 (286)
                      ++|++
T Consensus       209 ~~I~~  213 (775)
T TIGR00763       209 NKITK  213 (775)
T ss_pred             HHHHH
Confidence            99975

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.9e-30  Score=249.26  Aligned_cols=206  Identities=22%  Similarity=0.297  Sum_probs=182.3

Q ss_pred             eeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCC-CEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcCC
Q 023183           44 VVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRK-KLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDI  122 (286)
Q Consensus        44 ~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~d  122 (286)
                      .||++|+| +.|+|||+++||.+++++++.+++.+|.++ +.++++++.+...++  +..+++|.+||+|+|.++.++||
T Consensus         9 ~lpvlplr-~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~--p~~~dly~vGt~a~I~q~~~lpd   85 (782)
T COG0466           9 ELPVLPLR-DVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDE--PTEDDLYEVGTLAKILQILKLPD   85 (782)
T ss_pred             cceeEEec-CceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCC--CChhhhhhcchheeeeeeeeCCC
Confidence            89999999 899999999999999999999999999997 677777776544333  77789999999999999999999


Q ss_pred             CcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHh
Q 023183          123 GAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSL  201 (286)
Q Consensus       123 G~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~  201 (286)
                      |++ |+++|.+|++|.++...++|+.|+++.+++.+.....+.+++.+.+...+.+|++++++++.        +..+.+
T Consensus        86 g~~kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~--------e~l~~~  157 (782)
T COG0466          86 GTVKVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPP--------EELQSL  157 (782)
T ss_pred             CcEEEEEEeeeeEEEEeeccCCCceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhccCCCH--------HHHHHH
Confidence            999 99999999999999999999999999999876432356789999999999999999887764        443332


Q ss_pred             hhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023183          202 QWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQ  281 (286)
Q Consensus       202 ~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~~~I~  281 (286)
                      ..+              ++|..++|.+|++++++      .  ++||++||+.|+.+||+.++.+|.++++.++++++|+
T Consensus       158 ~~i--------------~~~~klad~iaa~l~~~------~--~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~  215 (782)
T COG0466         158 NSI--------------DDPGKLADTIAAHLPLK------L--EEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIR  215 (782)
T ss_pred             hcc--------------cchHHHHHHHHHhCCCC------H--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222              78889999999999999      8  9999999999999999999999999999999999997


Q ss_pred             c
Q 023183          282 A  282 (286)
Q Consensus       282 ~  282 (286)
                      +
T Consensus       216 ~  216 (782)
T COG0466         216 K  216 (782)
T ss_pred             H
Confidence            4

>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.97  E-value=1.3e-29  Score=218.13  Aligned_cols=194  Identities=26%  Similarity=0.371  Sum_probs=131.0

Q ss_pred             eeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCE-EEEEEE-cCCCcccccccccccccceeEEEEEEeeEcC
Q 023183           44 VVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKL-FVYFVL-DPISISEYATEASFAARCGCLVLIENVERLD  121 (286)
Q Consensus        44 ~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~-~~v~~~-~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~  121 (286)
                      +||+||++ +.|+|||+++||+|++++|+.|+++++.+++. ||+++. ......+. +...++|++||+|+|.++.+++
T Consensus         1 ~lPv~pl~-~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~G~~~~I~~~~~~~   78 (205)
T PF02190_consen    1 ELPVFPLR-NQVLFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLVKSNKDDSDE-PSIDDLYSVGTLARIIRVEELP   78 (205)
T ss_dssp             EEEEEEES-SS---TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE-EBSSTSSS-S-GGGB-SEEEEEEEEEEEEST
T ss_pred             CEEEEEeC-CcccCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEeecccCCcccC-CcccccccceEEEEEEEEEecC
Confidence            58999999 89999999999999999999999999998875 999888 33222222 5568899999999999999999


Q ss_pred             CCcE-EEEEEeeeEEEEEE---eecCCeEEEEEEEecCC-CCCCchh----hhHHHHHHHHHHHHHHhhhhhcCCchhHH
Q 023183          122 IGAL-VSIRGVGRVKIVKF---FQADPFLKGEVIPMQDT-TSASPSD----VSSKVLSVKEAVYSLNSLEIKLKAPKEAV  192 (286)
Q Consensus       122 dG~~-V~v~G~~R~rI~~~---~~~~p~~~a~v~~l~d~-~~~~~~~----~~a~~~~l~~~l~~~~~l~~~~~~~~~~~  192 (286)
                      ||++ |.++|.+||+|.++   .+++||++|++++++|. +. ..++    .+++...+.+.+.++......+.. .   
T Consensus        79 dg~~~v~~~g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---  153 (205)
T PF02190_consen   79 DGTYKVLVQGLQRFKILKINNETQEDPYLVAEVEPLEDVEPP-ESDELDEEIKALLRELIKKIKEAYENLKELLP-W---  153 (205)
T ss_dssp             TS-EEEEEEEEEEEEEEEEEE--ECSSCEEEEEEEE-----G-CGHHHHHHHHHHHHHHHHHHH---HHHCCC-C-H---
T ss_pred             CCCEEEEEEEEEEEEEEEEecccccCCceEEEEEEecccCcc-chhhhHHHHHHHHHHHHHHHHHHHHhhhcccc-h---
Confidence            9999 99999999999999   56999999999999873 22 1122    222222322222210011111110 0   


Q ss_pred             HHHHHHHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHH
Q 023183          193 MQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEG  269 (286)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~  269 (286)
                         ......              ..+++|..++||+|+.+|++      .  ++||+||++.|+.+|+++++++|++
T Consensus       154 ---~~~~~~--------------~~~~~~~~l~~~~~~~l~~~------~--~ek~~lL~~~~~~~Rl~~l~~~L~~  205 (205)
T PF02190_consen  154 ---DLLLKI--------------NNPDNPPELADFVASLLPLS------P--EEKQELLETDDLKERLKLLIELLKK  205 (205)
T ss_dssp             ---HHHHHT--------------TTHHHHHHHHHHHHHHS---------H--HHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred             ---hhhhhh--------------hccCCHHHHHHHHHHhCCCC------H--HHHHHHHcCCCHHHHHHHHHHHhcC
Confidence               110000              11267778999999999999      8  9999999999999999999999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.

>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]

Probab=99.96  E-value=6e-28  Score=206.32  Aligned_cols=204  Identities=18%  Similarity=0.284  Sum_probs=152.5

Q ss_pred             CCCceeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEe
Q 023183           38 VNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENV  117 (286)
Q Consensus        38 ~~~~~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~  117 (286)
                      +...+..||+|||+ +.|+|||..+||+||++||..|++.|+++++.||+++.+... +..++....+..|||+|+|+++
T Consensus         5 ~~~~p~~LplFPL~-~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~r~fGvv~i~~~~-~~~~~~~~~ls~VGcla~I~~~   82 (221)
T COG2802           5 PDDLPLELPLFPLP-GAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGR-EVGGGLPPELSDVGCLARITEF   82 (221)
T ss_pred             cCCccceeeccccc-cccccCCCCCchhhccHHHHHHHHHHHhcCCceeEEEecccc-cccCCCcchhhccceeEEEeEe
Confidence            45667899999998 799999999999999999999999999999999999988743 1112445689999999999999


Q ss_pred             eEcCCCcE-EEEEEeeeEEEEEEee-cCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHH
Q 023183          118 ERLDIGAL-VSIRGVGRVKIVKFFQ-ADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQT  195 (286)
Q Consensus       118 ~~l~dG~~-V~v~G~~R~rI~~~~~-~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~  195 (286)
                      ..++||++ |.++|.+||||.++.. .+||.+|++++.+|.+..... ..+.-+.+.+.+....+.-....         
T Consensus        83 ~~~~DGr~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~-a~evdr~~~~~l~~~~r~~~~~~---------  152 (221)
T COG2802          83 EELGDGRYLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDG-AEEVDRRLDALLMRAARAYLQRL---------  152 (221)
T ss_pred             eEcCCCcEEEEEEeEEEEEEEEEecccCcceeeccccCCCCccCcch-HHHHHHHHHHHHHHHHHHHhhhc---------
Confidence            99999999 9999999999999985 999999999999887653221 11111111111111111000000         


Q ss_pred             HHHHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Q 023183          196 YVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISM  273 (286)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~  273 (286)
                      ++  ...|.          ..-+.++..+++.++..+|++      .  .+||++|+..|+..|++.++.+++.....
T Consensus       153 ~l--~~d~~----------~~~~~~~~~l~n~L~~llp~~------~--~~k~~ll~a~d~~~r~~~L~~~~e~l~a~  210 (221)
T COG2802         153 EL--LADWE----------SYERASNADLANRLYMLLPFD------P--AEKQALLEAPDLPTRAERLIRLLEQLLAR  210 (221)
T ss_pred             ch--hhhhc----------ccccccHHHHHHHHHHhCCCC------h--hHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            00  00111          011256678888899999999      8  99999999999999999999998876554

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.3e-14  Score=135.92  Aligned_cols=243  Identities=19%  Similarity=0.200  Sum_probs=159.4

Q ss_pred             CCCCCcccccccc------cCC----------cccCcccchhhhhhhhhhcCCCc-eeeeeEEeecCCeeEeCCCceEEE
Q 023183            3 SLSCVSCPFFVTH------HQP----------YPFAGQLSTTRARLRSALKVNAT-SLVVPLLPFNINEVLVPSESKILH   65 (286)
Q Consensus         3 ~~~~~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~LPl~pl~~~~VlfPg~~~pL~   65 (286)
                      +..||.|++.+.|      +..          -++.++.+.++......+.+... .-..|+|++.  +..||+...|++
T Consensus       118 ~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~~~s~~~~~~~~~e~~~~e~~~p~f~v~--~~~~p~v~cpl~  195 (398)
T KOG4159|consen  118 ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSSSFSPKASEKSKEEESSRECESPLFPVC--TLAFPEVPCPLQ  195 (398)
T ss_pred             CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhccccccccccCCccccc--ccccccccCcHH
Confidence            5689999998654      211          23334444444555444444433 3389999984  799999999999


Q ss_pred             eechhHHHHHHHHHhCCC-EEEEEEEcCCCcccccccccccccceeEEEEEEeeEcCCCcE-EEEEEeeeEEEEEEeecC
Q 023183           66 LYEARYLALLEEALVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGAL-VSIRGVGRVKIVKFFQAD  143 (286)
Q Consensus        66 I~e~~~~~~v~~a~~~~~-~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~dG~~-V~v~G~~R~rI~~~~~~~  143 (286)
                      +|+++|..|++++++.+. +||++..+....      .+..+.+|++.+|..+..+.||+. +...|..||++.....++
T Consensus       196 vfe~~y~lm~~r~~~~~~~rf~i~~sd~~~~------~~~~~e~g~i~ei~~v~~l~dgrsv~~~~gk~r~r~~~~~~~d  269 (398)
T KOG4159|consen  196 VFEPRYRLMIRRLLETGDKRFGICLSDSSKG------SGQAAEIGCILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQTD  269 (398)
T ss_pred             HccchHHHHHHHHHhhcceeeeeecccccCC------cchhhhccchhhhcccccccccchhhhhhcCcceeeeeecCCC
Confidence            999999999999999854 999988665332      125789999999999999999999 888999999999999999


Q ss_pred             CeEEEEEEEecCCC-C--CCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHhhhhhhCCCCCCCcCCCCCc
Q 023183          144 PFLKGEVIPMQDTT-S--ASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSL  220 (286)
Q Consensus       144 p~~~a~v~~l~d~~-~--~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  220 (286)
                      +|..|+++++.|.+ .  ....+.+.++................+..+    ....+.. -.|.  .+..+.....+ .+
T Consensus       270 ~y~~~~ve~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~-~~~~--~p~le~~~~~~-~~  341 (398)
T KOG4159|consen  270 GYPVADVEYLEDRPAVKVEGHDEPETLVELMKEVVKKECLWFESVADP----MKGRLLV-HFGC--MPFLEINFECL-ES  341 (398)
T ss_pred             cceeeeeeeeeCcHHhhhccchhchhHHHHHHHHHHhhhhhhhccchh----hhhhhhh-cccc--cccchhchhhh-cc
Confidence            99999999998853 1  111112222222222122111111122210    0001100 0010  11111111111 34


Q ss_pred             hhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHH
Q 023183          221 AERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEG  269 (286)
Q Consensus       221 p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~  269 (286)
                      ...+++|....++++      .  ..+-.++...+..+|+.....++.-
T Consensus       342 ~~~~~~~~~~~~~~~------~--~~~~~~~~~~sl~~~l~~~~~~~t~  382 (398)
T KOG4159|consen  342 GPAWCWWKTALLPSE------A--RLKSEFLAMRSLKNRLTAIDRELTL  382 (398)
T ss_pred             chHHHHHHHhcCCcH------H--HHHHHHHhccchhhhhcccchhhhh
Confidence            557889999999988      7  8888999999999998877766653

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=7.1e-13  Score=129.85  Aligned_cols=215  Identities=14%  Similarity=0.177  Sum_probs=154.9

Q ss_pred             CCceeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCC-EEEEEEEcCCCcccc-c------------ccc--
Q 023183           39 NATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKK-LFVYFVLDPISISEY-A------------TEA--  102 (286)
Q Consensus        39 ~~~~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~-~~~v~~~~~~~~~~~-~------------~~~--  102 (286)
                      ..-..+||++|++ .-+||||..+++.|..++.++++++-+.... .+|+++.++...+.+ .            +..  
T Consensus        63 ~~~~~~l~~Lpi~-~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~vyi~~~~~~~~~  141 (906)
T KOG2004|consen   63 PDVPPRLPALPIT-RGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINEVYILEVFPGKDK  141 (906)
T ss_pred             cccCcccceeecc-CCCcCCCceeEEEecCHHHHHHHHHHHHhcCcccceeeeccCCCCCcceeeccccceeeeecCCcc
Confidence            4445689999999 6999999999999999999999999998766 788887665432211 0            000  


Q ss_pred             ----cccccceeEEEEEEee---EcCCCcE-EEEEEeeeEEEEEEeecC--CeEEEEEEEecCCCCCCchhhhHHHHHHH
Q 023183          103 ----SFAARCGCLVLIENVE---RLDIGAL-VSIRGVGRVKIVKFFQAD--PFLKGEVIPMQDTTSASPSDVSSKVLSVK  172 (286)
Q Consensus       103 ----~~l~~iGtla~I~~~~---~l~dG~~-V~v~G~~R~rI~~~~~~~--p~~~a~v~~l~d~~~~~~~~~~a~~~~l~  172 (286)
                          ...++.+.+++..++.   ....+.+ +.+-|..|+++.+...+.  +.+..+++.+.+.+-...++.+|+..++.
T Consensus       142 ~~~~l~~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e~~~e~~~~vl~v~v~~v~~e~~~~~~~~ka~~~ei~  221 (906)
T KOG2004|consen  142 LRMVLYPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKKDEEIKALTSEIL  221 (906)
T ss_pred             hhhhhhhhhheeeeeeccccccccccccceeecccccccccchhhhccccCCceeeeeecccCCccCcchHHHHHHHHHH
Confidence                1123444444333332   2234556 888888999998887653  44666676666654323345888888888


Q ss_pred             HHHHHHHhhhhhcCCchhHHHHHHHHHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhcc
Q 023183          173 EAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMD  252 (286)
Q Consensus       173 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe  252 (286)
                      ..+.++++.++.+.         +..+.....        ...   .+|..|+|+.|+....+      .  .+.|++|+
T Consensus       222 ~t~rdii~~n~l~r---------~~v~~~~~~--------~~~---~~~~~LaD~~aai~~~~------~--~elq~vL~  273 (906)
T KOG2004|consen  222 KTLRDIIAVNSLFR---------EQVATLSQL--------IVE---DNPIKLADFGAAISGAE------F--HELQEVLE  273 (906)
T ss_pred             HHHHHHHHhhHHHH---------HHHHHHHHH--------hcc---cChhHHHHHHHHHhccC------H--HHHHHHHH
Confidence            88888887664442         222211111        001   67889999999999888      8  99999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023183          253 LRDTKQRLNNSLEFVEGSISMLAAKLAIQA  282 (286)
Q Consensus       253 ~~d~~eRL~~~l~~L~~e~e~l~l~~~I~~  282 (286)
                      ..|+.+||++.+.+|+++++..+++.+|.+
T Consensus       274 ~~di~~Rl~~al~llkke~e~~klq~ki~k  303 (906)
T KOG2004|consen  274 ETDIEKRLEKALELLKKELELAKLQQKIGK  303 (906)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999854

>smart00464 LON Found in ATP-dependent protease La (LON)

Probab=99.18  E-value=1.2e-10  Score=88.33  Aligned_cols=47  Identities=28%  Similarity=0.498  Sum_probs=40.2

Q ss_pred             eeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCC--EEEEEEEc
Q 023183           44 VVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKK--LFVYFVLD   91 (286)
Q Consensus        44 ~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~--~~~v~~~~   91 (286)
                      .+|++|++ +.|+|||+..|+.++++++++++++++.+++  .++++...
T Consensus         1 ~lpviPl~-~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~~~~i~~~~~~   49 (92)
T smart00464        1 TLPLLPIR-RRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQD   49 (92)
T ss_pred             CceEEEcC-CCccCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            37999999 8999999999999999999999999998776  44444433

N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.

>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]

Probab=98.32  E-value=3.2e-07  Score=83.41  Aligned_cols=221  Identities=18%  Similarity=0.126  Sum_probs=132.8

Q ss_pred             hhcCCCceeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhC--CCEEEEEEEcCCCcccccccccccccceeEE
Q 023183           35 ALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVR--KKLFVYFVLDPISISEYATEASFAARCGCLV  112 (286)
Q Consensus        35 ~~~~~~~~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~--~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla  112 (286)
                      .+...+.+..+|+++.- .+|+|||.++|+.+..|+-+.+++.....  ++-|++.+.....        .....-+|.+
T Consensus        56 ~~ldd~t~~~~p~~~~~-~~v~~PgqtLPl~~i~~~~~s~~r~lvs~ar~~~F~vl~r~~v~--------~re~~r~tt~  126 (371)
T KOG1400|consen   56 ARLDDDTTNWIPICGQV-MAVLFPGQTLPLKFIDPQERSIVRRLVSSARDNGFVVLFRSDVP--------ERESLRYTTT  126 (371)
T ss_pred             eeecCCceeeecccCce-eeEecCcccCcchhcCHHHHHHHHHHHHhhcCCceEEEecccch--------HHhhccccce
Confidence            34467788899999987 69999999999999999777777777665  6678776654422        2233456666


Q ss_pred             EEEEeeEcCC--Cc-E--EEEEEeeeEEEEEEe-ecCCeEEEEEEEecCCCCCC--chhh--hHH---------------
Q 023183          113 LIENVERLDI--GA-L--VSIRGVGRVKIVKFF-QADPFLKGEVIPMQDTTSAS--PSDV--SSK---------------  167 (286)
Q Consensus       113 ~I~~~~~l~d--G~-~--V~v~G~~R~rI~~~~-~~~p~~~a~v~~l~d~~~~~--~~~~--~a~---------------  167 (286)
                      +|-....-.|  |. +  +...|..|+++.++. +..|.-.|+|+.+|+.....  +.-.  .|.               
T Consensus       127 evd~~R~p~d~Fgn~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~~~i~~~~~Sf~~~~avq~~~~n~~~ia~~~n  206 (371)
T KOG1400|consen  127 EVDAYRVPQDNFGNALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPDVEIPCLLPSFIPKSAVQLPAHNKCSIATRIN  206 (371)
T ss_pred             eccccccchhhhhhhhhhhhhhcccccceeeecccCCCcccceEEeccccccccccccccchhhheecccCcceeccCCC
Confidence            6553211122  43 3  677899999999986 56677788888887543210  0000  000               


Q ss_pred             ---------HHHHHHHHHHHHhhhhhc-----CCchhHHH--HH------HHHHHhhhhhhCCCCCCCcCCCCCchhHHH
Q 023183          168 ---------VLSVKEAVYSLNSLEIKL-----KAPKEAVM--QT------YVLNSLQWAEKQPSLDCDEAFIPSLAERVS  225 (286)
Q Consensus       168 ---------~~~l~~~l~~~~~l~~~~-----~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls  225 (286)
                               +..+. .+...-.++...     ..|.-+..  +.      -+.+...|.+.     +..+..|+.|..||
T Consensus       207 ~~p~s~e~dm~sla-~f~~i~sls~~h~~~ll~~~~was~tyqSy~la~rivenarl~yE~-----lk~ds~~~kpivlS  280 (371)
T KOG1400|consen  207 GYPFSAERDMTSLA-VFRQIGSLSGFHGDDLLSWPKWASLTYQSYFLAKRIVENARLWYEL-----LKEDSAPGKPIVLS  280 (371)
T ss_pred             CCccccccchhhhh-hheehhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHh-----ccccccCCCceEee
Confidence                     00000 000000111110     00000000  00      11112223221     11134568888999


Q ss_pred             HHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023183          226 FAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKL  278 (286)
Q Consensus       226 ~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~~  278 (286)
                      |++|..+++.      .  ..++.||.+.++..|+.+.+..++++.-.....+
T Consensus       281 f~~a~kihv~------e--~~~~hL~~~g~v~tRlq~e~~~~~k~ti~fCk~C  325 (371)
T KOG1400|consen  281 FKYAWKIHVC------E--RCREHLLWEGSVMTRLQREFFGIQKETITFCKEC  325 (371)
T ss_pred             hhhhhhhhhh------H--HHHHHHHhhcccccchheeeecccchhhhhhHhh
Confidence            9999999999      7  8899999999999999999888887765544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1zbo_A	210	Hypothetical protein BPP1347; alpha-beta protein,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10 Length = 210

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 33/180 (18%), Positives = 55/180 (30%), Gaps = 17/180 (9%)

Query: 45  VPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASF 104
           +PL P +    L P+    L ++E RYL ++   +     F   VL+  +          
Sbjct: 4   IPLFPLSN--ALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREV 61

Query: 105 AARCGCLVLIENVERLDIGAL-VSIRGVGRVKIVKFFQ-ADPFLKGEVIPMQDTTSASPS 162
            AR G +  I++ E      L ++  G GR ++    Q       G+  P+ D       
Sbjct: 62  LARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVP 121

Query: 163 DVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAE 222
                          L      L      + +  V   +        LD         AE
Sbjct: 122 P-------------ELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVADRWAE 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 48/338 (14%), Positives = 100/338 (29%), Gaps = 88/338 (26%)

Query: 11  FFVTHHQP-YPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVL----VPSESKILH 65
           F     +  Y F      T  R  S +          L  +N N+V     V      L 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLK 139

Query: 66  LYEARYLALLEEALVRKKLFVY----F---VLDPISISEYATEASFA--------ARCGC 110
           L +A     L E    K + +          +       Y  +              C  
Sbjct: 140 LRQA-----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 111 L-VLIENVERL------------DIGALVSIR-GVGRVKIVKFFQADPFLKG-----EVI 151
              ++E +++L            D  + + +R    + ++ +  ++ P+         V 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV- 253

Query: 152 PMQDTTSASPSDVSSKVL------SVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSL-QWA 204
             Q+  + +  ++S K+L       V + + +  +  I L      +    V + L ++ 
Sbjct: 254 --QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY- 310

Query: 205 EKQPSLDCDEAFIPSLAERVS------FAA-----------FQPVSGSTQSELVKLQQEK 247
                LDC    +P      +       A            ++ V+    + +++     
Sbjct: 311 -----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 248 LKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEM 285
           L+  + R    RL  S+ F         A +    L +
Sbjct: 366 LEPAEYRKMFDRL--SV-FPPS------AHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 54/290 (18%), Positives = 95/290 (32%), Gaps = 66/290 (22%)

Query: 21  FAGQ---LSTTR-ARLRSALKVNATSLVVPLLPFNINEVLVPSESK-ILHLYEARYLALL 75
           F      L TTR  ++   L    T+  + L   +    L P E K +L     +YL   
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHS--MTLTPDEVKSLL----LKYLDCR 314

Query: 76  EEALVRKKLFVYFVLDPISISEYATEAS-FAARCGCLVLIENVERLDIGALVSIRGVGRV 134
            + L R+ L      +P  +S  A       A        +N + ++   L +I      
Sbjct: 315 PQDLPREVLTT----NPRRLSIIAESIRDGLAT------WDNWKHVNCDKLTTI------ 358

Query: 135 KIVKFFQA-DP------------FLKGEVIPMQ-------DTTSASPSDVSSKVLS---- 170
            I       +P            F     IP         D   +    V +K+      
Sbjct: 359 -IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 171 ---VKEAVYSLNSL--EIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERV- 224
               KE+  S+ S+  E+K+K   E  +   +++     +     D D+   P L +   
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT---FDSDDLIPPYLDQYFY 474

Query: 225 SFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISML 274
           S      +      E + L +     +D R  +Q++ +       S S+L
Sbjct: 475 SHIGHH-LKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTAWNASGSIL 521

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3m65_A	209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	100.0
3ljc_A	252	ATP-dependent protease LA; LON N-domain, allosteri	100.0
1zbo_A	210	Hypothetical protein BPP1347; alpha-beta protein,	100.0
2ane_A	125	ATP-dependent protease LA; LONN119, LON protease,	99.95

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2.1e-40  Score=287.25  Aligned_cols=202  Identities=17%  Similarity=0.271  Sum_probs=176.3

Q ss_pred             eeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcC
Q 023183           42 SLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLD  121 (286)
Q Consensus        42 ~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~  121 (286)
                      ..++|+||++ |+|+|||+.+||+||+++|++|+++|+++++.||++++.+...++  ++.+++|+|||+|+|.++.++|
T Consensus         6 ~~~lPl~PLr-~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~i~lv~q~~~~~~~--p~~~~l~~vGt~a~I~~~~~l~   82 (209)
T 3m65_A            6 KRSIPLLPLR-GLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDE--PGEDEIFTVGTYTKIKQMLKLP   82 (209)
T ss_dssp             EEEEEEEEES-SCCCCTTCEEEEEECSHHHHHHHHHHTTTTSEEEEEEBSSTTCSS--CCGGGBCSEEEEEEEEEEEECT
T ss_pred             CCceEEEEeC-CccccCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCC--CCcchhhheeEEEEEEEEEECC
Confidence            3589999999 899999999999999999999999999998899999877654332  6678999999999999999999


Q ss_pred             CCcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHH
Q 023183          122 IGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNS  200 (286)
Q Consensus       122 dG~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~  200 (286)
                      ||++ |+++|.+||+|.++.+.+||+.|+|++++|... .+.+.+++.+.+++.+.++..++..++.        ++...
T Consensus        83 dG~~~v~v~G~~R~ri~~~~~~~~~~~a~v~~~~~~~~-~~~e~~al~~~l~~~~~~~~~~~~~~~~--------e~~~~  153 (209)
T 3m65_A           83 NGTIRVLVEGLKRAHIVKYNEHEDYTSVDIQLIHEDDS-KDTEDEALMRTLLDHFDQYIKISKKISA--------ETYAA  153 (209)
T ss_dssp             TSCEEEEEEEEEEEEEEEEEECSSSEEEEEEECCCC---CCSHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred             CCeEEEEEEEEEEEEEEEEEcCCCcEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCH--------HHHHH
Confidence            9999 999999999999999999999999999988753 3346788999999999999887766643        33222


Q ss_pred             hhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023183          201 LQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAK  277 (286)
Q Consensus       201 ~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~  277 (286)
                      +..              .++|..++|++|++++++      .  ++||+|||+.|+.+|+++++.+|+++++.++++
T Consensus       154 ~~~--------------~~dp~~lad~ia~~l~l~------~--~ekQ~lLe~~d~~~Rl~~l~~~L~~E~e~~~l~  208 (209)
T 3m65_A          154 VTD--------------IEEPGRMADIVASHLPLK------L--KDKQDILETADVKDRLNKVIDFINNEKEVLEIE  208 (209)
T ss_dssp             HHT--------------CCCHHHHHHHHHHHSCCC------H--HHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHc--------------cCCHHHHHHHHHHhCCCC------H--HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            221              189999999999999999      8  999999999999999999999999999999875

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}

Probab=100.00  E-value=2.8e-40  Score=294.33  Aligned_cols=207  Identities=18%  Similarity=0.226  Sum_probs=181.7

Q ss_pred             eeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcC
Q 023183           42 SLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLD  121 (286)
Q Consensus        42 ~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~  121 (286)
                      ..+||+||++ |+|+|||+++||+||+++|+.|+++|+++++.||++++.+...++  |+.+++|+|||+|+|.++.++|
T Consensus        15 ~~~lPl~PLr-~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~~~lv~q~~~~~~~--p~~~~l~~vGt~a~I~~~~~lp   91 (252)
T 3ljc_A           15 RIEIPVLPLR-DVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDE--PGVNDLFTVGTVASILQMLKLP   91 (252)
T ss_dssp             CCCCEEEEES-SCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSS--CCSSSBCSEEEEEEECCCBCCT
T ss_pred             CCceeEEEeC-CccccCCcceEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCC--CCccchhheeEEEEEEEEEECC
Confidence            4479999999 899999999999999999999999999998889888876644332  6678999999999999999999


Q ss_pred             CCcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHH
Q 023183          122 IGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNS  200 (286)
Q Consensus       122 dG~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~  200 (286)
                      ||++ |+++|.+||+|.++.+.+||+.|+|++++|... +..+.+++.+.+++.+.++..++..++.        ++...
T Consensus        92 dG~~~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~-~~~e~~al~~~l~~~~~~~~~l~~~~~~--------e~~~~  162 (252)
T 3ljc_A           92 DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTI-DEREQEVLVRTAISQFEGYIKLNKKIPP--------EVLTS  162 (252)
T ss_dssp             TSCEEEEEEEEEEEECSEEEEETTEEEEECCCCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHCSSCH--------HHHHH
T ss_pred             CCeEEEEEEEEEEEEEEEEEcCCCcEEEEEEeecCCCC-CChHHHHHHHHHHHHHHHHHHhcccCCH--------HHHHH
Confidence            9999 999999999999999999999999999988653 3346778899999999999888777754        33222


Q ss_pred             hhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023183          201 LQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAI  280 (286)
Q Consensus       201 ~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~~~I  280 (286)
                      +..              .++|..++|++|+.+|++      .  ++||+||++.|+.+|+++++.+|.++++.++++++|
T Consensus       163 ~~~--------------~~dp~~Lad~ia~~l~l~------~--~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I  220 (252)
T 3ljc_A          163 LNS--------------IDDPARLADTIAAHMPLK------L--ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRI  220 (252)
T ss_dssp             TTS--------------CCCHHHHHHHHHHTSCCC------H--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHc--------------cCCHHHHHHHHHHhCCCC------H--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111              178999999999999999      8  999999999999999999999999999999999999


Q ss_pred             hc
Q 023183          281 QA  282 (286)
Q Consensus       281 ~~  282 (286)
                      ++
T Consensus       221 ~~  222 (252)
T 3ljc_A          221 RN  222 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10

Probab=100.00  E-value=1.6e-36  Score=262.88  Aligned_cols=193  Identities=19%  Similarity=0.253  Sum_probs=159.5

Q ss_pred             eeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCc-ccccc-cccccccceeEEEEEEeeEc
Q 023183           43 LVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISI-SEYAT-EASFAARCGCLVLIENVERL  120 (286)
Q Consensus        43 ~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~-~~~~~-~~~~l~~iGtla~I~~~~~l  120 (286)
                      .+||+||+  |+|+|||+.+||+||+++|++|+++|+++++.||++++.+... ++  + ..+++|+|||+|+|.++.++
T Consensus         2 ~~lPl~PL--~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~~glv~~~~~~~~~~--~~~~~dl~~vGt~a~I~~~~~l   77 (210)
T 1zbo_A            2 AEIPLFPL--SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRR--PDGREVLARAGTMARIDHWEAP   77 (210)
T ss_dssp             CEEEEEEE--SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCC--SSCCCCEEEEEEEEEEEEEECS
T ss_pred             cEeeEEec--CeeecCCCceeeEECCHHHHHHHHHHHhcCCcEEEEEeCCCcccCc--ccccCchhceEEEEEEEEEEeC
Confidence            47999999  4999999999999999999999999999888999999876442 22  3 25789999999999999999


Q ss_pred             CCCcE-EEEEEeeeEEEEE-EeecCCeEEEEEEEecCCCC-CCchhhhHHHHHHHHHHHHHHhhh-----hhcCCchhHH
Q 023183          121 DIGAL-VSIRGVGRVKIVK-FFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLNSLE-----IKLKAPKEAV  192 (286)
Q Consensus       121 ~dG~~-V~v~G~~R~rI~~-~~~~~p~~~a~v~~l~d~~~-~~~~~~~a~~~~l~~~l~~~~~l~-----~~~~~~~~~~  192 (286)
                      |||++ |+++|.+||+|.+ +.+.+||+.|+|++++|++. ....+.+++.+.+++.+.++.+++     ..++.     
T Consensus        78 pdG~~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~~~l~~-----  152 (210)
T 1zbo_A           78 MPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAA-----  152 (210)
T ss_dssp             STTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCS-----
T ss_pred             CCceEEEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHHHHhccccccccCCC-----
Confidence            99999 9999999999965 66889999999999988642 133567889999999888887665     11110     


Q ss_pred             HHHHHHHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 023183          193 MQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSIS  272 (286)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e  272 (286)
                                            ....++|..++|++|+++|++      .  ++||+|||+ |+.+||++++.+|++++.
T Consensus       153 ----------------------~~~~~dp~~lad~ia~~l~l~------~--~ekQ~lLe~-d~~~Rl~~l~~~L~~e~~  201 (210)
T 1zbo_A          153 ----------------------PFRLDDCGWVADRWAEMLSLP------P--ADKARLLLL-PPLDRLREIDAVLAADGH  201 (210)
T ss_dssp             ----------------------CCCTTCHHHHHHHHHHHSCCC------H--HHHHHHHHS-CHHHHHHHHHHHHHC---
T ss_pred             ----------------------cCCCCCHHHHHHHHHHhCCCC------H--HHHHHHHhC-CHHHHHHHHHHHHHHHhh
Confidence                                  011268999999999999999      8  999999999 999999999999999887


Q ss_pred             HHH
Q 023183          273 MLA  275 (286)
Q Consensus       273 ~l~  275 (286)
                      .++
T Consensus       202 ~~~  204 (210)
T 1zbo_A          202 ALE  204 (210)
T ss_dssp             ---
T ss_pred             hhh
Confidence            664

>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10

Probab=99.95  E-value=8e-27  Score=186.09  Aligned_cols=110  Identities=18%  Similarity=0.266  Sum_probs=99.0

Q ss_pred             eeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcC
Q 023183           42 SLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLD  121 (286)
Q Consensus        42 ~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~  121 (286)
                      +.+||+||++ |.|+|||+.+||+||+++|++|+++|+++++.|+++++.+...++  ++.+++|++||+|+|.++.+++
T Consensus        15 p~~lPl~PLr-~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~~~i~lv~~k~~~~~~--p~~~dl~~vGt~a~I~~~~~lp   91 (125)
T 2ane_A           15 RIEIPVLPLR-DVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDE--PGVNDLFTVGTVASILQMLKLP   91 (125)
T ss_dssp             CEEEEEEEES-SCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSS--CCGGGBCSEEEEEEEEEEEECT
T ss_pred             CCeEEEEEeC-CeeeCCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCccC--CCccchhccEEEEEEEEEeeCC
Confidence            3479999999 899999999999999999999999999988888888776644332  5678899999999999999999


Q ss_pred             CCcE-EEEEEeeeEEEEEEeecCCeEEEEEEEec
Q 023183          122 IGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQ  154 (286)
Q Consensus       122 dG~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~  154 (286)
                      ||++ |+++|.+||+|.++.+.+||+.|+|++++
T Consensus        92 dG~~~ilv~G~~R~rI~~~~~~~~~~~a~V~~l~  125 (125)
T 2ane_A           92 DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLE  125 (125)
T ss_dssp             TSCEEEEEEEEEEEEEEEEEECSSSEEEEEEEC-
T ss_pred             CCcEEEEEEEEEEEEEEEEEcCCCcEEEEEEECC
Confidence            9999 99999999999999899999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d2anea1	110	b.122.1.10 (A:8-117) ATP-dependent protease La (Lo	7e-10
d1zboa1	197	b.122.1.10 (A:2-198) Hypothetical protein BPP1347	2e-04

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 110

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: ATP-dependent protease La (Lon), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 53.6 bits (128), Expect = 7e-10
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 45  VPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASF 104
           +P+LP   + V+ P     L +   + +  LE A+   K  +       S  +       
Sbjct: 4   IPVLPLR-DVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEAST-DEPGVNDL 61

Query: 105 AARCGCLVLIENVERLDIGALVSIRGVGRVKIVKFFQADPFLKGEV 150
                   +++ ++  D    V + G+ R +I            + 
Sbjct: 62  FTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKA 107

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]} Length = 197

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 45  VPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASF 104
           +PL P +    L P+    L ++E RYL ++   +     F   VL+  +          
Sbjct: 3   IPLFPLSN--ALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREV 60

Query: 105 AARCGCLVLIENVERLDIGA-LVSIRGVGRVKIVKF-FQADPFLKGEV-IPMQDTTSASP 161
            AR G +  I++ E        ++  G GR ++            G+      D     P
Sbjct: 61  LARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVP 120

Query: 162 SDVSSKVLSVKEAVYSLNSLEI 183
            +++    ++   +  L    +
Sbjct: 121 PELARSASALGRLIARLQREGV 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1zboa1	197	Hypothetical protein BPP1347 {Bordetella parapertu	100.0
d2anea1	110	ATP-dependent protease La (Lon), N-terminal domain	99.93

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

Probab=100.00  E-value=5.2e-34  Score=240.79  Aligned_cols=192  Identities=18%  Similarity=0.250  Sum_probs=150.0

Q ss_pred             eeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcCCC
Q 023183           44 VVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIG  123 (286)
Q Consensus        44 ~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~dG  123 (286)
                      .||+||++  +|+|||+++||+||+|+|++|+++|+++++.|++++.......+..++.+++|++||+|+|.++.+++||
T Consensus         2 elPlfpL~--~VlfP~~~~PL~Ife~ry~~~i~~~l~~~~~~~~v~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~dG   79 (197)
T d1zboa1           2 EIPLFPLS--NALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA   79 (197)
T ss_dssp             EEEEEEES--SCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT
T ss_pred             CCCEEeCC--CccCCCcceeeEeCchHHHHHHHHHHhcCCCeeeeccccccccccccccccccceeEEEEEeeecccCCC
Confidence            69999995  7999999999999999999999999999998877776543322222456789999999999999999999


Q ss_pred             cE-EEEEEeeeEEEEEEee-cCCeEEEEEEEecCCCCC-CchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHH
Q 023183          124 AL-VSIRGVGRVKIVKFFQ-ADPFLKGEVIPMQDTTSA-SPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNS  200 (286)
Q Consensus       124 ~~-V~v~G~~R~rI~~~~~-~~p~~~a~v~~l~d~~~~-~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~  200 (286)
                      ++ |.++|.+||+|.++.+ .++|+.|.+++++++... ...+..++...+.+.+..+.........             
T Consensus        80 ~~~i~v~G~~R~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------------  146 (197)
T d1zboa1          80 LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHI-------------  146 (197)
T ss_dssp             CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTT-------------
T ss_pred             ceeEeeeeccceeeeeeeeccCceEEEEEEeccccCCccCcHHHHHHHHHHHHHHHHHHHhcCCchh-------------
Confidence            99 9999999999999885 568999999999876432 2234556666666666665543322211             


Q ss_pred             hhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHH
Q 023183          201 LQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVE  268 (286)
Q Consensus       201 ~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~  268 (286)
                               .........++|..++|++|+.++++      .  ++||+|||+ |..+||+++..+|+
T Consensus       147 ---------~~~~~~~~~~~~~~l~~~la~~l~l~------~--~~kQ~lLE~-~~~~RL~~l~~~L~  196 (197)
T d1zboa1         147 ---------MPMAAPFRLDDCGWVADRWAEMLSLP------P--ADKARLLLL-PPLDRLREIDAVLA  196 (197)
T ss_dssp             ---------CSBCSCCCTTCHHHHHHHHHHHSCCC------H--HHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             ---------hhhhhhhccCCHHHHHHHHHHhCCCC------H--HHHHHHHCC-CHHHHHHHHHHHHc
Confidence                     00000111278999999999999999      8  999999997 55689999999885

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: ATP-dependent protease La (Lon), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.1e-25  Score=173.48  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=98.3

Q ss_pred             eeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcCC
Q 023183           43 LVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDI  122 (286)
Q Consensus        43 ~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~d  122 (286)
                      .+||+||++ |.|+|||+++||+|++++|++|+++|+++++.++++...+...+.  +..+++|.+||+|+|.++.+++|
T Consensus         2 ~~lPv~pl~-~~vlFPg~~~pl~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vG~~~~i~~~~~~~d   78 (110)
T d2anea1           2 IEIPVLPLR-DVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDE--PGVNDLFTVGTVASILQMLKLPD   78 (110)
T ss_dssp             EEEEEEEES-SCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSS--CCGGGBCSEEEEEEEEEEEECTT
T ss_pred             ceEeEEEcC-CceeCCCccEEEEECCHHHHHHHHHHHhccCceeeeeeccccccc--cccchhhceeeEEEEEEEEeccC
Confidence            479999999 899999999999999999999999999998888777766544332  56789999999999999999999


Q ss_pred             CcE-EEEEEeeeEEEEEEeecCCeEEEEEEEe
Q 023183          123 GAL-VSIRGVGRVKIVKFFQADPFLKGEVIPM  153 (286)
Q Consensus       123 G~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l  153 (286)
                      |++ |+++|.+||+|.++.+++||+.|+|+++
T Consensus        79 g~~~i~v~g~~R~~I~~~~~~~p~~~a~Ve~l  110 (110)
T d2anea1          79 GTVKVLVEGLQRARISALSDNGEHFSAKAEYL  110 (110)
T ss_dssp             SCEEEEEEEEEEEEEEEEEECSSSEEEEEEEC
T ss_pred             CeEEEEEEEEEEEEEEEEEcCCCCEEEEEEEC
Confidence            999 9999999999999999999999999975