Citrus Sinensis ID: 023284

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MESDEGDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSEHTFRSYLPWFSAK
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHccccccccccccHHHccccccccccccccccEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccEEEEEEcccccccEcccHHHHHccccccccccc
Coil and Loop (DISEMBL)
MESDEGDEQQQEAerlplsqrpewsdvtpipqddgpnpvvpiaykpefsetMSYFRAVYysderssrsfqltkeaiclnpgnytvWHFRRQIIETLHTDLQDELAFVGRIAksnsknyqlwHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGedifnnsawnqRYFVVTRSPLLGGLIAMRDSEVNFTIEAilgnpenespWRYLRGLykddteswindprMLLSVFESFEYQkqlcfcsehtfrsylpwfsak
Flexible Loop (DISEMBL)
MESDEGDEQQQEAerlplsqrpewsdvtpipqddgpnpVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSnsknyqlwhhRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAilgnpenespwRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSEHTFRSylpwfsak
Low Complexity Region (SEG)
MESDEGDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSEHTFRSYLPWFSAK
Disordered region (IsUnstruct)
**************************************VVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSEHTFRSYLPWF***
Disordered Region (DISOPRED)
****************PLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSEHTFRSYLPWFSA*
Disordered Region (DISEMBL)
***************LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSEHTFRSYLPWFSAK
Disordered Region (DISPRO)
***********EAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSEHTFRSYLPWFS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESDEGDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSEHTFRSYLPWFSAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
P93227	346	Protein farnesyltransfera	N/A	no	0.838	0.687	0.714	1e-105
O24304	333	Protein farnesyltransfera	N/A	no	0.869	0.741	0.696	1e-102
Q9LX33	326	Protein farnesyltransfera	yes	no	0.841	0.733	0.711	1e-98
P29702	375	Protein farnesyltransfera	yes	no	0.767	0.581	0.497	2e-61
Q61239	377	Protein farnesyltransfera	yes	no	0.767	0.578	0.497	1e-60
P49354	379	Protein farnesyltransfera	yes	no	0.767	0.575	0.493	3e-60
Q04631	377	Protein farnesyltransfera	yes	no	0.767	0.578	0.488	2e-59
Q54RT9	322	Protein farnesyltransfera	yes	no	0.802	0.708	0.452	2e-55
O60052	294	Protein farnesyltransfera	yes	no	0.746	0.721	0.416	9e-44
P29703	316	Protein farnesyltransfera	yes	no	0.757	0.680	0.334	2e-31

>sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 170/238 (71%), Positives = 203/238 (85%)

Query: 15  RLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKE 74
           R+P  +RP+W+DV P+PQDDGP PVVPIAY  +FSETM YFRA+Y +DERS+R+ QLT E
Sbjct: 10  RIPFKERPDWADVKPVPQDDGPCPVVPIAYTEDFSETMDYFRAIYVADERSTRALQLTGE 69

Query: 75  AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG 134
           AI LNPGNYTVW FRR ++E L  DL++EL FV RIA  N+KNYQ+WHHRRW+AEKLG  
Sbjct: 70  AIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGAD 129

Query: 135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194
           AV  EL+FTKK+ S DAKNYHAWS+RQWVLQALGGWEDEL YCQ LL +DI+NNSAWNQR
Sbjct: 130 AVTNELEFTKKIFSQDAKNYHAWSHRQWVLQALGGWEDELAYCQQLLEDDIYNNSAWNQR 189

Query: 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM 252
           YFVVTRSPLLGGL+AMR+ EVN+T++AI  +PENESPWRYLRGLYK+DT+S + D ++
Sbjct: 190 YFVVTRSPLLGGLVAMRELEVNYTVQAIRASPENESPWRYLRGLYKNDTQSLVQDSQV 247

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate.
Solanum lycopersicum (taxid: 4081)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 9

>sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/247 (69%), Positives = 203/247 (82%)

Query: 6   GDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERS 65
           G+ + +E +R+PL  RPEWSDVTPIPQDDGP+PVVPI Y  EFSE M YFRAVY++ E S
Sbjct: 3   GNIEVEEDDRVPLRLRPEWSDVTPIPQDDGPSPVVPINYSEEFSEVMDYFRAVYFAKELS 62

Query: 66  SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125
           SR+  LT EAI LN GNYTVWHFRR ++E+L  DL  E  FV R+A  NSKNYQ+WHHRR
Sbjct: 63  SRALALTAEAIGLNAGNYTVWHFRRLLLESLKVDLHVEREFVERVASGNSKNYQIWHHRR 122

Query: 126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI 185
           WVAEKLG  A N EL+FTKK+LS+DAK+YHAWS+RQWVLQ LGGWEDEL YC  LL EDI
Sbjct: 123 WVAEKLGPEARNSELEFTKKILSVDAKHYHAWSHRQWVLQNLGGWEDELSYCSELLAEDI 182

Query: 186 FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES 245
           FNNSAWNQRYFV+TRSP+LGGL AMR+SEV FT+EAI+  PENES WRYLRGL+KD++  
Sbjct: 183 FNNSAWNQRYFVITRSPVLGGLKAMRESEVLFTVEAIISYPENESSWRYLRGLFKDESTL 242

Query: 246 WINDPRM 252
           ++ND ++
Sbjct: 243 YVNDAQV 249

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|Q9LX33|FNTA_ARATH Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2

 Score =  359 bits (922), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/239 (71%), Positives = 203/239 (84%)

Query: 14  ERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTK 73
           E +PLSQR EWSDV P+ QDDGPNPVVPIAYK EF ETM YFRA+Y+SDERS R+ +LT+
Sbjct: 5   ETVPLSQRLEWSDVVPLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRALRLTE 64

Query: 74  EAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT 133
           E + LN GNYTVWHFRR ++E L+ DL +EL F+ RIA+ NSKNYQLWHHRRWVAEKLG 
Sbjct: 65  ETLLLNSGNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGP 124

Query: 134 GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ 193
               +EL+FT+++LSLDAK+YHAWS+RQW L+ALGGWEDELDYC  LL  D+FNNSAWNQ
Sbjct: 125 DVAGRELEFTRRVLSLDAKHYHAWSHRQWTLRALGGWEDELDYCHELLEADVFNNSAWNQ 184

Query: 194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM 252
           RY+V+T+SPLLGGL AMR+SEV++TI+AIL NP NES WRYL+ LYKDD ESWI+DP +
Sbjct: 185 RYYVITQSPLLGGLEAMRESEVSYTIKAILTNPANESSWRYLKALYKDDKESWISDPSV 243

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/221 (49%), Positives = 151/221 (68%), Gaps = 3/221 (1%)

Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           RPEW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 65  RPEWADIDPVPQNDGPNPVVQIIYSEKFQDVYDYFRAVLQRDERSERAFKLTRDAIELNA 124

Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 125 ANYTVWHFRRVLLKSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 182

Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct: 183 EFIADILTQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 242

Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 243 TTGYNDR-AILEREVQYTLEMIKLVPHNESAWNYLKGILQD 282

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|Q61239|FNTA_MOUSE Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Mus musculus GN=Fnta PE=1 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/221 (49%), Positives = 150/221 (67%), Gaps = 3/221 (1%)

Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 69  RAEWADIDPVPQNDGPNPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128

Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 129 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 186

Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +LS DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 187 EFIADILSQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 246

Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 247 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P49354|FNTA_HUMAN Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 150/221 (67%), Gaps = 3/221 (1%)

Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 69  RAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128

Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 186

Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246

Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 247 TTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|Q04631|FNTA_RAT Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)

Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 69  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128

Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 129 ANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 186

Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 246

Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 247 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|Q54RT9|FNTA_DICDI Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 150/241 (62%), Gaps = 13/241 (5%)

Query: 16  LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEA 75
           +P S+RPEWSDV P+ QDDGP+P+ PI Y   F + M+YFRA+  S E+S R   L +E 
Sbjct: 11  VPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVLDLLEEV 70

Query: 76  ICLNPGNYTVWHFRRQII------ETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE 129
           I  NP NYT+W++RR+++      ET+  D+Q E+  +  + +++ KNYQ+W+HRR++ E
Sbjct: 71  IQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWNHRRFIVE 130

Query: 130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189
           K   G+ NKE +F   +L  DAKNYHAWS+RQW+L+    W  EL     LL  D  NNS
Sbjct: 131 KY-IGSDNKEKEFLSGVLLEDAKNYHAWSHRQWLLKTYRDWNGELAMVDKLLSLDHRNNS 189

Query: 190 AWNQRYFVVTR---SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESW 246
            WN R+FV++    SP    LI   + EV F    I  +P NESPW YL+GL+K    S 
Sbjct: 190 VWNHRFFVISNLNPSPFPLSLI---EREVEFAFNHIRHSPNNESPWSYLKGLFKGQKIST 246

Query: 247 I 247
           I
Sbjct: 247 I 247

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|O60052|FNTA_SCHPO Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwp1 PE=1 SV=1

 Score =  177 bits (448), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 130/216 (60%), Gaps = 4/216 (1%)

Query: 23  EWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN 82
           E+  +TPIPQDDG NP+  I Y   + + M+YFRA+    E S R+  LT   I  NP +
Sbjct: 16  EYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEYSLRALNLTGFLIMNNPAH 75

Query: 83  YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF 142
           YTVW +R QI+    + + +EL ++  IA+   KNYQ+WHHR+ +     T    +EL+F
Sbjct: 76  YTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHRQKILSL--TKNYERELEF 133

Query: 143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP 202
           TKKM  +D+KNYH WSYR W+LQ    +  EL     LL +DI+NNSAWN R++V+  + 
Sbjct: 134 TKKMFEIDSKNYHVWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETS 193

Query: 203 LLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL 238
            +       + E+N+  + IL  P+N+S W YL G+
Sbjct: 194 KVVSW--SLEEELNYLKDKILFAPDNQSAWNYLCGV 227

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P29703|FNTA_YEAST Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM2 PE=1 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 9/224 (4%)

Query: 23  EWSDVTPIP-QDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPG 81
           ++SDV P+P + D  + +  I Y  ++   M   RA+   +E S R+ QLT E I + P 
Sbjct: 5   DYSDVKPLPIETDLQDELCRIMYTEDYKRLMGLARALISLNELSPRALQLTAEIIDVAPA 64

Query: 82  NYTVWHFRRQIIETLHTDLQD-------ELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG 134
            YT+W++R  I+  + ++ +D       EL ++  +  +N KNYQ+W +R+ + +   + 
Sbjct: 65  FYTIWNYRFNIVRHMMSESEDTVLYLNKELDWLDEVTLNNPKNYQIWSYRQSLLKLHPSP 124

Query: 135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194
           +  +EL   K M+  D+KNYH WSYR+W       ++ EL Y   L+  DI+NNSAW  R
Sbjct: 125 SFKRELPILKLMIDDDSKNYHVWSYRKWCCLFFSDFQHELAYASDLIETDIYNNSAWTHR 184

Query: 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL 238
            F    +  +   + + D E+ F ++ I   P+N SPW YLRG 
Sbjct: 185 MFYWVNAKDVISKVELAD-ELQFIMDKIQLVPQNISPWTYLRGF 227

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
255587054	333	protein farnesyltransferase alpha subuni	0.873	0.744	0.733	1e-110
225433858	331	PREDICTED: protein farnesyltransferase/g	0.922	0.791	0.687	1e-108
449521042	325	PREDICTED: protein farnesyltransferase/g	0.841	0.735	0.736	1e-105
147805786	362	hypothetical protein VITISV_017351 [Viti	0.922	0.723	0.617	1e-104
224095698	330	predicted protein [Populus trichocarpa]	0.848	0.730	0.734	1e-104
350535897	346	protein farnesyltransferase/geranylgeran	0.838	0.687	0.714	1e-103
358249104	346	uncharacterized protein LOC100790130 [Gl	0.869	0.713	0.712	1e-103
33327040	332	farnesyltransferase/type I geranylgerany	0.883	0.756	0.673	1e-101
12230395	333	RecName: Full=Protein farnesyltransferas	0.869	0.741	0.696	1e-100
255647234	340	unknown [Glycine max]	0.859	0.717	0.700	1e-100

>gi|255587054|ref|XP_002534116.1| protein farnesyltransferase alpha subunit, putative [Ricinus communis] gi|223525828|gb|EEF28267.1| protein farnesyltransferase alpha subunit, putative [Ricinus communis]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 182/248 (73%), Positives = 215/248 (86%)

Query: 5   EGDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDER 64
           + D+  +  E +PLSQRPEWSDV P+ QDDGPNPVVPIAYKPEF ETM+YFRA+Y SDER
Sbjct: 2   DSDDDLRPEETVPLSQRPEWSDVIPVQQDDGPNPVVPIAYKPEFEETMNYFRAIYLSDER 61

Query: 65  SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124
           S R+ QLT   I LNPGNYTVWHFRR ++E L+ +L +EL ++ R+AK N+KNYQ+WHHR
Sbjct: 62  SPRALQLTHLVILLNPGNYTVWHFRRLVLEALNAELYEELDYIERVAKKNTKNYQIWHHR 121

Query: 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED 184
           RWVAEKLGT A  KELQFT+K+LSLDAKNYHAWS+RQWVLQALGGWEDELDYC+ LL  D
Sbjct: 122 RWVAEKLGTDAAAKELQFTRKILSLDAKNYHAWSHRQWVLQALGGWEDELDYCRQLLEHD 181

Query: 185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE 244
           +FNNSAWNQRYF++TRSPLLGGL A+R+SE+ FT+EAIL NPENESPWRYLRGLY+ DT+
Sbjct: 182 VFNNSAWNQRYFIITRSPLLGGLKAVRESEMKFTVEAILANPENESPWRYLRGLYQGDTQ 241

Query: 245 SWINDPRM 252
           SWINDP++
Sbjct: 242 SWINDPQV 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433858|ref|XP_002264387.1| PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Vitis vinifera] gi|297743768|emb|CBI36651.3| unnamed protein product [Vitis vinifera]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/262 (68%), Positives = 214/262 (81%)

Query: 8   EQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSR 67
           E ++E E  PLSQRPEWSDVTP+PQDDGPNPVVPIAYK +F+ETM YFRAVY++DERS R
Sbjct: 2   EWKEEGEERPLSQRPEWSDVTPVPQDDGPNPVVPIAYKDDFTETMDYFRAVYFADERSLR 61

Query: 68  SFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV 127
           S  +T EAI +N GNYTVWHFRR I+  L+ DL +EL F+ ++A  N KNYQ+WHHRRWV
Sbjct: 62  SLHVTAEAIHMNAGNYTVWHFRRLILGALNADLHEELNFIKKVANGNPKNYQIWHHRRWV 121

Query: 128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187
           AEKLG+ A +KEL FTKK+LSLDAKNYHAWS+RQWVLQ LGGWEDELDYC+ LL +DIFN
Sbjct: 122 AEKLGSDATSKELDFTKKILSLDAKNYHAWSHRQWVLQELGGWEDELDYCKQLLEDDIFN 181

Query: 188 NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWI 247
           NSAWNQRYFV+T+SP LGGL AMR+SEVN+T+ AI+  PENESPWRYLRGLYKDD +SW+
Sbjct: 182 NSAWNQRYFVITKSPFLGGLEAMRESEVNYTVGAIIAKPENESPWRYLRGLYKDDAQSWV 241

Query: 248 NDPRMLLSVFESFEYQKQLCFC 269
           NDP++          ++   F 
Sbjct: 242 NDPQVSSVCLTVLSAKRNTVFA 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521042|ref|XP_004167540.1| PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [Cucumis sativus]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/239 (73%), Positives = 207/239 (86%)

Query: 14  ERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTK 73
           + LP+S+R EW DVTP+PQDDGPNP+V IAYK +FSE M YFRAVY +DERS RS  LT 
Sbjct: 5   DTLPISERREWCDVTPLPQDDGPNPIVAIAYKEDFSELMGYFRAVYRADERSPRSLHLTA 64

Query: 74  EAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT 133
           EAI +NPGNYTVWHFRR I+E L+ DL DEL F+  IA+SN+KNYQ+WHHRRWVA+KLGT
Sbjct: 65  EAIAMNPGNYTVWHFRRLILEALNVDLHDELNFLDNIAESNTKNYQIWHHRRWVAQKLGT 124

Query: 134 GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ 193
            A NKEL+FT+K++SLD+KNYHAWS+RQWVLQALGGWEDELDYC  LL ED+FNNSAWNQ
Sbjct: 125 DAANKELEFTRKIISLDSKNYHAWSHRQWVLQALGGWEDELDYCHELLKEDVFNNSAWNQ 184

Query: 194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM 252
           RYFV+TRSPLLGGL +MR+SEVN+T+EAIL +PENES WRYLRGLY  DT+SWI  P++
Sbjct: 185 RYFVITRSPLLGGLKSMRESEVNYTVEAILAHPENESSWRYLRGLYAGDTQSWIIAPQV 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805786|emb|CAN69481.1| hypothetical protein VITISV_017351 [Vitis vinifera]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/293 (61%), Positives = 215/293 (73%), Gaps = 31/293 (10%)

Query: 8   EQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSR 67
           E ++E E  PLSQRPEWSDVTP+PQDDGPNPVVPIAYK +F+ETM YFRAVY++DERS R
Sbjct: 2   EWKEEGEERPLSQRPEWSDVTPVPQDDGPNPVVPIAYKDDFTETMDYFRAVYFADERSLR 61

Query: 68  SFQLTKEAICLNPGNYTV-------------------------------WHFRRQIIETL 96
           S  +T EAI +N GNYTV                               WHFRR I+E L
Sbjct: 62  SLHVTAEAIHMNAGNYTVTLSNLDFDFAENLFLENEAIGRIASRVEAVVWHFRRLILEAL 121

Query: 97  HTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA 156
           + DL +EL F+ ++A  N KNYQ+WHHRRWVAEKLG+ A +KEL FTKK+LSLDAKNYHA
Sbjct: 122 NADLHEELNFIKKVANGNPKNYQIWHHRRWVAEKLGSDATSKELDFTKKILSLDAKNYHA 181

Query: 157 WSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN 216
           WS+RQWVLQ LGGWEDELDYC+ LL +DIFNNSAWNQRYFV+T+SP LGGL AMR+SEVN
Sbjct: 182 WSHRQWVLQELGGWEDELDYCKQLLEDDIFNNSAWNQRYFVITKSPFLGGLEAMRESEVN 241

Query: 217 FTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFC 269
           +T+ AI+  PENESPWRYLRGLYKDD +SW+NDP++          ++   F 
Sbjct: 242 YTVGAIIAKPENESPWRYLRGLYKDDAQSWVNDPQVSSVCLTVLSAKRNTVFA 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095698|ref|XP_002310440.1| predicted protein [Populus trichocarpa] gi|222853343|gb|EEE90890.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/241 (73%), Positives = 207/241 (85%)

Query: 12  EAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQL 71
           E  +L LSQ PEW+DVTPIPQDDGPNPVVPI YKP+F ETM YFRAVY ++E S R+ QL
Sbjct: 4   EEHKLRLSQDPEWADVTPIPQDDGPNPVVPIDYKPDFIETMGYFRAVYKANEFSPRALQL 63

Query: 72  TKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131
           T +AI LNPGNYTVWHFRR I++ L  DL +EL F+  I++SN KNYQ+WHHRRW+AEKL
Sbjct: 64  THQAILLNPGNYTVWHFRRLILDALGIDLNEELNFMSGISESNPKNYQIWHHRRWIAEKL 123

Query: 132 GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW 191
           GT A +KEL+FT++MLSLDAKNYHAWS+RQWVLQALGGWE+ELDYC  LL +D+FNNSAW
Sbjct: 124 GTDAASKELEFTRRMLSLDAKNYHAWSHRQWVLQALGGWENELDYCHQLLEKDVFNNSAW 183

Query: 192 NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPR 251
           NQRYFVVTRSP LGGL A R+SEV +TIE ILGNP NESPWRYLRGLYK+D +SWI+DP+
Sbjct: 184 NQRYFVVTRSPFLGGLEATRESEVKYTIETILGNPGNESPWRYLRGLYKNDPKSWISDPQ 243

Query: 252 M 252
           +
Sbjct: 244 V 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535897|ref|NP_001233963.1| protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Solanum lycopersicum] gi|12230437|sp|P93227.1|FNTA_SOLLC RecName: Full=Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; AltName: Full=CAAX farnesyltransferase subunit alpha; AltName: Full=FTase-alpha; AltName: Full=Ras proteins prenyltransferase subunit alpha; AltName: Full=Type I protein geranyl-geranyltransferase subunit alpha; Short=GGTase-I-alpha gi|1815666|gb|AAC49665.1| farnesyl protein transferase subunit A [Solanum lycopersicum]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 170/238 (71%), Positives = 203/238 (85%)

Query: 15  RLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKE 74
           R+P  +RP+W+DV P+PQDDGP PVVPIAY  +FSETM YFRA+Y +DERS+R+ QLT E
Sbjct: 10  RIPFKERPDWADVKPVPQDDGPCPVVPIAYTEDFSETMDYFRAIYVADERSTRALQLTGE 69

Query: 75  AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG 134
           AI LNPGNYTVW FRR ++E L  DL++EL FV RIA  N+KNYQ+WHHRRW+AEKLG  
Sbjct: 70  AIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGAD 129

Query: 135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194
           AV  EL+FTKK+ S DAKNYHAWS+RQWVLQALGGWEDEL YCQ LL +DI+NNSAWNQR
Sbjct: 130 AVTNELEFTKKIFSQDAKNYHAWSHRQWVLQALGGWEDELAYCQQLLEDDIYNNSAWNQR 189

Query: 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM 252
           YFVVTRSPLLGGL+AMR+ EVN+T++AI  +PENESPWRYLRGLYK+DT+S + D ++
Sbjct: 190 YFVVTRSPLLGGLVAMRELEVNYTVQAIRASPENESPWRYLRGLYKNDTQSLVQDSQV 247

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249104|ref|NP_001240249.1| uncharacterized protein LOC100790130 [Glycine max] gi|255641545|gb|ACU21046.1| unknown [Glycine max]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/250 (71%), Positives = 205/250 (82%), Gaps = 3/250 (1%)

Query: 3   SDEGDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSD 62
           S EG+E QQ   R+PL +R EWSDVTP+PQ+DGPNPVVPI Y  EFSE M YFRAVY +D
Sbjct: 5   SSEGEEVQQ---RVPLRERVEWSDVTPVPQNDGPNPVVPIQYTEEFSEVMDYFRAVYLTD 61

Query: 63  ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122
           ERS R+  LT EA+  N GNYTVWHFRR ++E+L  DL DEL FV R+A  NSKNYQ+WH
Sbjct: 62  ERSPRALALTAEAVQFNSGNYTVWHFRRLLLESLKVDLNDELEFVERMAAGNSKNYQMWH 121

Query: 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLG 182
           HRRWVAEKLG  A N EL+FTKK+LS+DAK+YHAWS+RQW LQ LGGWEDEL+YC  LL 
Sbjct: 122 HRRWVAEKLGPEARNNELEFTKKILSVDAKHYHAWSHRQWALQTLGGWEDELNYCTELLK 181

Query: 183 EDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD 242
           EDIFNNSAWNQRYFV+TRSP LGGL AMR+SEV +TIEAI+  PENES WRYLRGLYK +
Sbjct: 182 EDIFNNSAWNQRYFVITRSPFLGGLKAMRESEVLYTIEAIIAYPENESSWRYLRGLYKGE 241

Query: 243 TESWINDPRM 252
           T SW+NDP++
Sbjct: 242 TTSWVNDPQV 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33327040|gb|AAQ08894.1| farnesyltransferase/type I geranylgeranyltransferase alpha subunit [Catharanthus roseus]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 169/251 (67%), Positives = 212/251 (84%)

Query: 8   EQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSR 67
           ++ ++ +R+PLS+RPEW+DVTP+PQ+DGP PVVPI+Y  EFSETM+YFRA+Y +DERSSR
Sbjct: 4   DELKQGKRIPLSKRPEWADVTPVPQNDGPKPVVPISYSDEFSETMNYFRAIYLADERSSR 63

Query: 68  SFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV 127
           + QLT EAI  NPGNYTVW FRR+I+E L+ +LQ+EL ++G IA+ N+KNYQ+WHHRRWV
Sbjct: 64  ALQLTAEAIKHNPGNYTVWQFRRRILEALNANLQEELEYLGSIAEGNTKNYQIWHHRRWV 123

Query: 128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187
           AEKLG+ A +KEL+FTKK+   DAKNYHAWS+RQWVLQALGGWEDEL YC  LL EDIFN
Sbjct: 124 AEKLGSDARSKELEFTKKIFMEDAKNYHAWSHRQWVLQALGGWEDELAYCHKLLEEDIFN 183

Query: 188 NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWI 247
           NSAWNQRYFV+TRSPL GG+ AMR+SEV++ ++AI+ +P NESPWRYLRGLY  DT+S  
Sbjct: 184 NSAWNQRYFVLTRSPLHGGIEAMRESEVSYAVKAIISDPGNESPWRYLRGLYGKDTQSLS 243

Query: 248 NDPRMLLSVFE 258
            DP+++    E
Sbjct: 244 KDPQVVSVCLE 254

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12230395|sp|O24304.1|FNTA_PEA RecName: Full=Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; AltName: Full=CAAX farnesyltransferase subunit alpha; AltName: Full=FTase-alpha; AltName: Full=Ras proteins prenyltransferase subunit alpha; AltName: Full=Type I protein geranyl-geranyltransferase subunit alpha; Short=GGTase-I-alpha gi|2246442|gb|AAB62580.1| farnesyltransferase alpha subunit [Pisum sativum]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/247 (69%), Positives = 203/247 (82%)

Query: 6   GDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERS 65
           G+ + +E +R+PL  RPEWSDVTPIPQDDGP+PVVPI Y  EFSE M YFRAVY++ E S
Sbjct: 3   GNIEVEEDDRVPLRLRPEWSDVTPIPQDDGPSPVVPINYSEEFSEVMDYFRAVYFAKELS 62

Query: 66  SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125
           SR+  LT EAI LN GNYTVWHFRR ++E+L  DL  E  FV R+A  NSKNYQ+WHHRR
Sbjct: 63  SRALALTAEAIGLNAGNYTVWHFRRLLLESLKVDLHVEREFVERVASGNSKNYQIWHHRR 122

Query: 126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI 185
           WVAEKLG  A N EL+FTKK+LS+DAK+YHAWS+RQWVLQ LGGWEDEL YC  LL EDI
Sbjct: 123 WVAEKLGPEARNSELEFTKKILSVDAKHYHAWSHRQWVLQNLGGWEDELSYCSELLAEDI 182

Query: 186 FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES 245
           FNNSAWNQRYFV+TRSP+LGGL AMR+SEV FT+EAI+  PENES WRYLRGL+KD++  
Sbjct: 183 FNNSAWNQRYFVITRSPVLGGLKAMRESEVLFTVEAIISYPENESSWRYLRGLFKDESTL 242

Query: 246 WINDPRM 252
           ++ND ++
Sbjct: 243 YVNDAQV 249

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647234|gb|ACU24085.1| unknown [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/244 (70%), Positives = 202/244 (82%)

Query: 9   QQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRS 68
           ++ E +R+PL +R EWSDVTP+PQ+DGPNPVVPI Y  +FS+ M YFRAVY +DERS R+
Sbjct: 2   KEGEQQRVPLRERAEWSDVTPLPQNDGPNPVVPIQYTEDFSQVMDYFRAVYLADERSPRA 61

Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA 128
             LT EA+  N GNYTVWHFRR ++E+L  DL  EL FV R+A  NSKNYQ+WHHRRWVA
Sbjct: 62  LALTAEAVQFNSGNYTVWHFRRLLLESLKVDLNAELDFVERMAAGNSKNYQMWHHRRWVA 121

Query: 129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN 188
           EKLG  A   EL+FTKK+LS+DAK+YHAWS+RQWVLQALGGWEDEL+YC  LL EDIFNN
Sbjct: 122 EKLGPEARKNELEFTKKILSVDAKHYHAWSHRQWVLQALGGWEDELNYCTELLKEDIFNN 181

Query: 189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWIN 248
           SAWNQRYFV+TRSP LGGL AMR+SEV +TIEAI+  PENES WRYLRGLYK +T SW+N
Sbjct: 182 SAWNQRYFVITRSPFLGGLKAMRESEVLYTIEAIIAYPENESSWRYLRGLYKGETTSWVN 241

Query: 249 DPRM 252
           DP++
Sbjct: 242 DPQV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2081177	326	FTA "farnesyltransferase A" [A	0.834	0.726	0.717	4.1e-97
UNIPROTKB|F1NJX8	347	FNTA "Uncharacterized protein"	0.816	0.668	0.480	6.4e-60
UNIPROTKB|F1N081	375	FNTA "Protein farnesyltransfer	0.767	0.581	0.497	2.7e-59
UNIPROTKB|P29702	375	FNTA "Protein farnesyltransfer	0.767	0.581	0.497	2.7e-59
ZFIN|ZDB-GENE-030131-866	374	fnta "farnesyltransferase, CAA	0.820	0.622	0.491	5.7e-59
MGI|MGI:104683	377	Fnta "farnesyltransferase, CAA	0.767	0.578	0.497	2.5e-58
UNIPROTKB|E2RHY8	380	FNTA "Uncharacterized protein"	0.767	0.573	0.493	4e-58
UNIPROTKB|P49354	379	FNTA "Protein farnesyltransfer	0.767	0.575	0.493	4e-58
UNIPROTKB|E9PQP6	249	FNTA "Protein farnesyltransfer	0.767	0.875	0.493	4e-58
RGD|2625	377	Fnta "farnesyltransferase, CAA	0.767	0.578	0.488	2.8e-57

TAIR|locus:2081177 FTA "farnesyltransferase A" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 170/237 (71%), Positives = 202/237 (85%)

Query:    14 ERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTK 73
             E +PLSQR EWSDV P+ QDDGPNPVVPIAYK EF ETM YFRA+Y+SDERS R+ +LT+
Sbjct:     5 ETVPLSQRLEWSDVVPLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRALRLTE 64

Query:    74 EAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT 133
             E + LN GNYTVWHFRR ++E L+ DL +EL F+ RIA+ NSKNYQLWHHRRWVAEKLG 
Sbjct:    65 ETLLLNSGNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGP 124

Query:   134 GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ 193
                 +EL+FT+++LSLDAK+YHAWS+RQW L+ALGGWEDELDYC  LL  D+FNNSAWNQ
Sbjct:   125 DVAGRELEFTRRVLSLDAKHYHAWSHRQWTLRALGGWEDELDYCHELLEADVFNNSAWNQ 184

Query:   194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDP 250
             RY+V+T+SPLLGGL AMR+SEV++TI+AIL NP NES WRYL+ LYKDD ESWI+DP
Sbjct:   185 RYYVITQSPLLGGLEAMRESEVSYTIKAILTNPANESSWRYLKALYKDDKESWISDP 241

GO:0005634 "nucleus" evidence=ISM

GO:0008318 "protein prenyltransferase activity" evidence=IEA;IDA

GO:0018342 "protein prenylation" evidence=IEA;IDA

GO:0004311 "farnesyltranstransferase activity" evidence=TAS

GO:0005953 "CAAX-protein geranylgeranyltransferase complex" evidence=IPI

GO:0018343 "protein farnesylation" evidence=TAS

GO:0018344 "protein geranylgeranylation" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0048509 "regulation of meristem development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005965 "protein farnesyltransferase complex" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IMP

UNIPROTKB|F1NJX8 FNTA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 113/235 (48%), Positives = 156/235 (66%)

Query:     7 DEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSS 66
             +E++++   +    R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS 
Sbjct:    21 EEEEEDGGYVLYRDRKEWADIEPVPQNDGPNPVVQIIYSEKFRDVYDYFRAVLQKDERSE 80

Query:    67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRW 126
             R+F+LT +AI LN  NYTVWHFRR ++++L  DL +EL ++  I +   KNYQ+WHHRR 
Sbjct:    81 RAFKLTADAIELNAANYTVWHFRRVLLQSLGKDLYEELKYITAIIEDQPKNYQVWHHRRV 140

Query:   127 VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186
             + E L   +  +EL+F   +L+ DAKNYHAW +RQWV+Q    W+DEL+Y   LL ED+ 
Sbjct:   141 LVEWLQDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDDELEYVDQLLREDVR 198

Query:   187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
             NNS WNQRYFV+  +       A+ D EV +T+E I   P NES W YL+G+ +D
Sbjct:   199 NNSVWNQRYFVIFNTTGYDDP-AVLDREVQYTLEMITAVPHNESAWNYLKGILQD 252

GO:0018342 "protein prenylation" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0030548 "acetylcholine receptor regulator activity" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IEA

UNIPROTKB|F1N081 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Bos taurus (taxid:9913)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 110/221 (49%), Positives = 151/221 (68%)

Query:    21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
             RPEW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct:    65 RPEWADIDPVPQNDGPNPVVQIIYSEKFQDVYDYFRAVLQRDERSERAFKLTRDAIELNA 124

Query:    81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
              NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct:   125 ANYTVWHFRRVLLKSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 182

Query:   141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
             +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct:   183 EFIADILTQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 242

Query:   201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
             +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:   243 TTGYNDR-AILEREVQYTLEMIKLVPHNESAWNYLKGILQD 282

GO:0090045 "positive regulation of deacetylase activity" evidence=IEA

GO:0090044 "positive regulation of tubulin deacetylation" evidence=IEA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030548 "acetylcholine receptor regulator activity" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=IEA

UNIPROTKB|P29702 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Bos taurus (taxid:9913)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 110/221 (49%), Positives = 151/221 (68%)

Query:    21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
             RPEW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct:    65 RPEWADIDPVPQNDGPNPVVQIIYSEKFQDVYDYFRAVLQRDERSERAFKLTRDAIELNA 124

Query:    81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
              NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct:   125 ANYTVWHFRRVLLKSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 182

Query:   141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
             +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct:   183 EFIADILTQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 242

Query:   201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
             +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:   243 TTGYNDR-AILEREVQYTLEMIKLVPHNESAWNYLKGILQD 282

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

ZFIN|ZDB-GENE-030131-866 fnta "farnesyltransferase, CAAX box, alpha" [Danio rerio (taxid:7955)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 117/238 (49%), Positives = 157/238 (65%)

Query:    21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
             R EW+D+ P+PQDDGPNPVV IAY  +F++    FRA+  +DERS R+F LT EAI LN 
Sbjct:    47 RKEWADLEPVPQDDGPNPVVKIAYSEKFTDVFDMFRALLKNDERSERAFALTAEAIDLNA 106

Query:    81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
              NYTVWH+RR +++ L  DL++E+ ++  I +   KNYQ+WHHRR V E L   A   EL
Sbjct:   107 ANYTVWHYRRVLLQALKKDLREEMNYITAIIEDQPKNYQVWHHRRMVVEWLSDPA--DEL 164

Query:   141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
             QF  ++LS DAKNYHAW +RQWV+Q    W+ EL+Y + LL ED+ NNSAWNQR+FV++ 
Sbjct:   165 QFVAEILSQDAKNYHAWQHRQWVIQEYKLWDGELEYVEELLEEDVRNNSAWNQRHFVISH 224

Query:   201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFE 258
             +       A+   EV +T+E I   P NES W YL+ + +D   S  + P +L  V E
Sbjct:   225 TSGYSDP-AILQREVQYTLEQIKKAPHNESAWNYLKAILQDGGLS--SYPGLLEQVME 279

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

MGI|MGI:104683 Fnta "farnesyltransferase, CAAX box, alpha" [Mus musculus (taxid:10090)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 110/221 (49%), Positives = 150/221 (67%)

Query:    21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
             R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct:    69 RAEWADIDPVPQNDGPNPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128

Query:    81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
              NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct:   129 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 186

Query:   141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
             +F   +LS DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct:   187 EFIADILSQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 246

Query:   201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
             +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:   247 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=ISO;IDA

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=ISO

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005953 "CAAX-protein geranylgeranyltransferase complex" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO

GO:0008144 "drug binding" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0010035 "response to inorganic substance" evidence=ISO

GO:0010469 "regulation of receptor activity" evidence=IMP

GO:0014070 "response to organic cyclic compound" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

GO:0018343 "protein farnesylation" evidence=ISO

GO:0019840 "isoprenoid binding" evidence=ISO

GO:0030548 "acetylcholine receptor regulator activity" evidence=IMP

GO:0030971 "receptor tyrosine kinase binding" evidence=IPI

GO:0034097 "response to cytokine stimulus" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0043014 "alpha-tubulin binding" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IMP

GO:0045787 "positive regulation of cell cycle" evidence=ISO

GO:0051770 "positive regulation of nitric-oxide synthase biosynthetic process" evidence=ISO

GO:0051771 "negative regulation of nitric-oxide synthase biosynthetic process" evidence=ISO

GO:0090044 "positive regulation of tubulin deacetylation" evidence=ISO

GO:0090045 "positive regulation of deacetylase activity" evidence=ISO

UNIPROTKB|E2RHY8 FNTA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 109/221 (49%), Positives = 150/221 (67%)

Query:    21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
             R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct:    70 RAEWADIDPVPQNDGPNPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 129

Query:    81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
              NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct:   130 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 187

Query:   141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
             +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct:   188 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 247

Query:   201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
             +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:   248 TTGYNDR-AILEREVQYTLEMIKLVPHNESAWNYLKGILQD 287

GO:0090045 "positive regulation of deacetylase activity" evidence=IEA

GO:0090044 "positive regulation of tubulin deacetylation" evidence=IEA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030548 "acetylcholine receptor regulator activity" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=IEA

UNIPROTKB|P49354 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 109/221 (49%), Positives = 150/221 (67%)

Query:    21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
             R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct:    69 RAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128

Query:    81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
              NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct:   129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 186

Query:   141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
             +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct:   187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246

Query:   201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
             +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:   247 TTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0030548 "acetylcholine receptor regulator activity" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IEA

GO:0004661 "protein geranylgeranyltransferase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0018344 "protein geranylgeranylation" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006921 "cellular component disassembly involved in execution phase of apoptosis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0018343 "protein farnesylation" evidence=IDA

GO:0004660 "protein farnesyltransferase activity" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0043014 "alpha-tubulin binding" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0090045 "positive regulation of deacetylase activity" evidence=IDA

GO:0090044 "positive regulation of tubulin deacetylation" evidence=IDA

UNIPROTKB|E9PQP6 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 109/221 (49%), Positives = 150/221 (67%)

Query:    21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
             R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct:     7 RAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 66

Query:    81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
              NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct:    67 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 124

Query:   141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
             +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct:   125 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 184

Query:   201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
             +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:   185 TTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 224

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

RGD|2625 Fnta "farnesyltransferase, CAAX box, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 108/221 (48%), Positives = 150/221 (67%)

Query:    21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
             R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct:    69 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128

Query:    81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
              NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct:   129 ANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 186

Query:   141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
             +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct:   187 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 246

Query:   201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
             +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct:   247 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

GO:0004660 "protein farnesyltransferase activity" evidence=IEA;ISO;IDA

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=IEA;IDA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IEA;ISO

GO:0005953 "CAAX-protein geranylgeranyltransferase complex" evidence=IDA

GO:0008017 "microtubule binding" evidence=IEA;ISO

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0010035 "response to inorganic substance" evidence=IMP

GO:0010469 "regulation of receptor activity" evidence=ISO

GO:0014070 "response to organic cyclic compound" evidence=IMP

GO:0018342 "protein prenylation" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA;ISO

GO:0030548 "acetylcholine receptor regulator activity" evidence=IEA;ISO

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA;ISO

GO:0034097 "response to cytokine stimulus" evidence=IMP

GO:0043014 "alpha-tubulin binding" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IEA;ISO

GO:0045787 "positive regulation of cell cycle" evidence=IMP

GO:0051770 "positive regulation of nitric-oxide synthase biosynthetic process" evidence=IMP

GO:0051771 "negative regulation of nitric-oxide synthase biosynthetic process" evidence=IMP

GO:0090044 "positive regulation of tubulin deacetylation" evidence=IEA;ISO

GO:0090045 "positive regulation of deacetylase activity" evidence=IEA;ISO

GO:0008144 "drug binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0019840 "isoprenoid binding" evidence=IDA

GO:0042277 "peptide binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LX33	FNTA_ARATH	2, ., 5, ., 1, ., 5, 9	0.7112	0.8415	0.7331	yes	no
P93227	FNTA_SOLLC	2, ., 5, ., 1, ., 5, 9	0.7142	0.8380	0.6878	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.963
4th Layer	2.5.1.59	0.946
4th Layer	2.5.1.58	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001930001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (331 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020744001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (439 aa)				•	•		•		0.864
	GSVIVG00018478001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (276 aa)					•	•	•		0.458

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	1e-156
COG5536	328	COG5536, BET4, Protein prenyltransferase, alpha su	9e-44
pfam01239	30	pfam01239, PPTA, Protein prenyltransferase alpha s	7e-09
pfam01239	30	pfam01239, PPTA, Protein prenyltransferase alpha s	9e-07
pfam01239	30	pfam01239, PPTA, Protein prenyltransferase alpha s	3e-04
pfam01239	30	pfam01239, PPTA, Protein prenyltransferase alpha s	5e-04
pfam01239	30	pfam01239, PPTA, Protein prenyltransferase alpha s	0.003

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score =  436 bits (1124), Expect = e-156
 Identities = 174/239 (72%), Positives = 200/239 (83%)

Query: 13  AERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLT 72
            E +PLSQRPEW+DVTPIPQDDGPNPVVPIAY PEF E M YFRAVY SDERS R+  LT
Sbjct: 1   DEWVPLSQRPEWADVTPIPQDDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLT 60

Query: 73  KEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG 132
            + I LNPGNYTVWHFRR  +E L  DL++EL F   +A+ N KNYQ+WHHRRW+AEKLG
Sbjct: 61  ADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120

Query: 133 TGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192
             A NKEL+FT+K+LSLDAKNYHAWS+RQWVL+ LGGWEDEL+YC  LL ED+ NNSAWN
Sbjct: 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN 180

Query: 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPR 251
           QRYFV+TRSPLLGGL AMRDSE+ +TI+AIL NP NESPWRYLRGL+KDD E+ ++DP 
Sbjct: 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239

Length = 320

>gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  151 bits (382), Expect = 9e-44
 Identities = 84/245 (34%), Positives = 130/245 (53%), Gaps = 16/245 (6%)

Query: 25  SDVTPIP-QDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY 83
             V P+P Q D  + +  I Y   +   M  FRA     E S R+ +LT+E I  NP  Y
Sbjct: 7   RRVKPLPIQFDLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFY 66

Query: 84  TVWHFRRQIIETLHTDLQD-------ELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAV 136
           T+W++R  I++ +    +D       EL F+    K N KNYQ+WHHR+W+ E     + 
Sbjct: 67  TIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSW 126

Query: 137 NKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG------WEDELDYCQMLLGEDIFNNSA 190
            +EL  TKK+L  D++NYH WSYR+WVL+ +         + EL+Y   L+  DI+NNSA
Sbjct: 127 GRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSA 186

Query: 191 WNQRYFVVTRSPLLGGLIAMR--DSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWIN 248
           W+ RY  + R    G +I+ +  + E+ +  + I  +P+N+S W YLRG+  +     + 
Sbjct: 187 WHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVM 246

Query: 249 DPRML 253
               +
Sbjct: 247 IGEKV 251

Length = 328

>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat

 Score = 50.2 bits (121), Expect = 7e-09
 Identities = 17/30 (56%), Positives = 25/30 (83%)

Query: 138 KELQFTKKMLSLDAKNYHAWSYRQWVLQAL 167
           +EL+ T+K+L LD KNY AW+YR+W+L+ L
Sbjct: 1   EELELTEKLLELDPKNYSAWNYRRWLLEKL 30

Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30

>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat

 Score = 44.0 bits (105), Expect = 9e-07
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131
           +EL    ++ + + KNY  W++RRW+ EKL
Sbjct: 1   EELELTEKLLELDPKNYSAWNYRRWLLEKL 30

Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30

>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 172 DELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +EL+  + LL  D  N SAWN R +++ +
Sbjct: 1   EELELTEKLLELDPKNYSAWNYRRWLLEK 29

Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30

>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 69 FQLTKEAICLNPGNYTVWHFRRQIIETL 96
           +LT++ + L+P NY+ W++RR ++E L
Sbjct: 3  LELTEKLLELDPKNYSAWNYRRWLLEKL 30

Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30

>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat

 Score = 34.0 bits (79), Expect = 0.003
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 213 SEVNFTIEAILGNPENESPWRYLRGLYK 240
            E+  T + +  +P+N S W Y R L +
Sbjct: 1   EELELTEKLLELDPKNYSAWNYRRWLLE 28

Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	100.0
PLN02789	320	farnesyltranstransferase	100.0
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	100.0
PLN02789	320	farnesyltranstransferase	100.0
KOG0529	421	consensus Protein geranylgeranyltransferase type I	100.0
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	99.95
KOG0529	421	consensus Protein geranylgeranyltransferase type I	99.93
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.76
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.76
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
KOG1126	638	consensus DNA-binding cell division cycle control	99.69
PRK12370	553	invasion protein regulator; Provisional	99.68
PRK11189	296	lipoprotein NlpI; Provisional	99.68
PRK12370	553	invasion protein regulator; Provisional	99.66
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.64
PRK15359	144	type III secretion system chaperone protein SscB;	99.63
KOG1126	638	consensus DNA-binding cell division cycle control	99.62
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.61
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.6
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.58
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.57
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
PRK11189	296	lipoprotein NlpI; Provisional	99.56
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.55
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.53
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.52
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.52
KOG1125	579	consensus TPR repeat-containing protein [General f	99.5
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.47
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.46
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.45
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.42
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.37
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.37
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.35
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.34
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.3
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.28
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.28
KOG0553	304	consensus TPR repeat-containing protein [General f	99.27
KOG1125	579	consensus TPR repeat-containing protein [General f	99.24
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.24
PRK14574	822	hmsH outer membrane protein; Provisional	99.22
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.2
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.18
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.18
KOG0553	304	consensus TPR repeat-containing protein [General f	99.18
KOG2076	895	consensus RNA polymerase III transcription factor	99.15
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.14
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.13
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.12
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.1
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.09
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.07
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.07
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.04
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.02
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.0
KOG2076	895	consensus RNA polymerase III transcription factor	98.98
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.98
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.94
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.93
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.89
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.88
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.86
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.83
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.83
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.83
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.82
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.81
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.79
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.78
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.77
PRK14574	822	hmsH outer membrane protein; Provisional	98.76
PRK11906	458	transcriptional regulator; Provisional	98.76
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.75
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.74
KOG1129	478	consensus TPR repeat-containing protein [General f	98.73
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.73
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.72
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.72
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.71
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.7
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.68
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.65
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.64
PRK11906	458	transcriptional regulator; Provisional	98.63
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	98.63
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.63
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.63
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	98.62
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.59
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.57
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.53
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.53
KOG2003	840	consensus TPR repeat-containing protein [General f	98.52
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.51
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.51
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.49
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.48
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.45
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.38
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.36
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.36
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.36
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.36
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.35
PF13371	73	TPR_9: Tetratricopeptide repeat	98.34
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.33
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.32
KOG1129	478	consensus TPR repeat-containing protein [General f	98.3
KOG2003	840	consensus TPR repeat-containing protein [General f	98.28
PRK10803	263	tol-pal system protein YbgF; Provisional	98.26
PRK10803	263	tol-pal system protein YbgF; Provisional	98.25
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.22
KOG4234	271	consensus TPR repeat-containing protein [General f	98.21
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.19
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.18
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.17
PF13371	73	TPR_9: Tetratricopeptide repeat	98.16
KOG4234	271	consensus TPR repeat-containing protein [General f	98.16
PF12688	120	TPR_5: Tetratrico peptide repeat	98.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.15
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.14
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.12
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.09
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.09
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.99
PRK15331	165	chaperone protein SicA; Provisional	97.97
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.93
PF12688	120	TPR_5: Tetratrico peptide repeat	97.91
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.91
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.84
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.81
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.75
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.75
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.7
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.66
PF13431	34	TPR_17: Tetratricopeptide repeat	97.65
PRK15331	165	chaperone protein SicA; Provisional	97.65
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.64
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.62
KOG4555	175	consensus TPR repeat-containing protein [Function	97.62
KOG4555	175	consensus TPR repeat-containing protein [Function	97.55
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.55
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.51
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.5
PLN03218	1060	maturation of RBCL 1; Provisional	97.47
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.41
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.38
PLN03077	857	Protein ECB2; Provisional	97.37
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.36
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.35
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.32
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.32
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.25
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.22
PF13431	34	TPR_17: Tetratricopeptide repeat	97.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.19
PLN03218	1060	maturation of RBCL 1; Provisional	97.18
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.17
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.13
PF13428	44	TPR_14: Tetratricopeptide repeat	97.13
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.12
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.1
PLN03077	857	Protein ECB2; Provisional	97.08
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.05
PF13428	44	TPR_14: Tetratricopeptide repeat	96.95
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.83
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.67
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.66
PF13512	142	TPR_18: Tetratricopeptide repeat	96.65
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.61
PF13512	142	TPR_18: Tetratricopeptide repeat	96.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.61
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.56
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.51
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.31
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.25
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.09
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.97
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.93
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.93
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.86
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.85
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.73
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.63
PRK10941	269	hypothetical protein; Provisional	95.57
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.57
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.49
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.35
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.33
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.19
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.12
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.1
PRK04841	903	transcriptional regulator MalT; Provisional	94.97
PRK10941	269	hypothetical protein; Provisional	94.85
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.73
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.66
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.62
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.38
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.13
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.87
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	93.76
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.75
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.7
PRK04841	903	transcriptional regulator MalT; Provisional	93.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.47
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.34
KOG1310	758	consensus WD40 repeat protein [General function pr	93.31
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	93.27
KOG1310	758	consensus WD40 repeat protein [General function pr	93.16
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.04
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.04
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.01
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.66
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	92.65
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.26
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.25
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.19
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.11
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	91.86
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	91.83
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.09
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.64
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.51
KOG4340	459	consensus Uncharacterized conserved protein [Funct	90.25
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.05
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.05
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	89.8
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.46
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.37
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	88.47
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.3
COG5191	435	Uncharacterized conserved protein, contains HAT (H	87.67
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	87.32
COG2912	269	Uncharacterized conserved protein [Function unknow	87.04
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	86.88
COG2912	269	Uncharacterized conserved protein [Function unknow	86.44
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	84.6
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	84.4
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	82.02
COG4976	287	Predicted methyltransferase (contains TPR repeat)	81.63
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	81.31
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	81.06

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-61  Score=415.30  Aligned_cols=241  Identities=52%  Similarity=0.884  Sum_probs=225.9

Q ss_pred             ccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 023284           16 LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET   95 (284)
Q Consensus        16 ~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~   95 (284)
                      ++|++|-+|+||+||||++|++|+|+|.|+.+|.++|.||||++.++++|+|||++|+.+|.+||.+||+|++|+.||.+
T Consensus        10 ~~y~d~~dw~Dv~PlpqdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~   89 (318)
T KOG0530|consen   10 VLYSDRYDWSDVTPLPQDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRH   89 (318)
T ss_pred             hhhhhhcccccCccCCCCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284           96 LHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN-KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL  174 (284)
Q Consensus        96 l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~-eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL  174 (284)
                      ++.++.+||++++.++..+|||||+|+||++++..+|.  .. .||+++..+|..|.||||||+||+|+++.++.|+.||
T Consensus        90 l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d--~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL  167 (318)
T KOG0530|consen   90 LMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD--PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL  167 (318)
T ss_pred             hHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC--cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999997  55 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHH
Q 023284          175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLL  254 (284)
Q Consensus       175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~  254 (284)
                      .+++++|+.|.+|+|||++|.+++....+..+ +..+++|+.+..+.|.+.|+|+|+|+|++|++.. .+++.++|.+.+
T Consensus       168 ~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~-~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~-d~gl~s~s~vv~  245 (318)
T KOG0530|consen  168 AYADELLEEDIRNNSAWNQRYFVITNTKGVIS-KAELERELNYTKDKILLVPNNESAWNYLKGLLEL-DSGLSSDSKVVS  245 (318)
T ss_pred             HHHHHHHHHhhhccchhheeeEEEEeccCCcc-HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh-ccCCcCCchHHH
Confidence            99999999999999999999999877433221 2457999999999999999999999999999998 455888888887


Q ss_pred             HHHhhh
Q 023284          255 SVFESF  260 (284)
Q Consensus       255 ~~~~~~  260 (284)
                      -+-+.+
T Consensus       246 f~~~l~  251 (318)
T KOG0530|consen  246 FVENLY  251 (318)
T ss_pred             HHHHHh
Confidence            665543

>PLN02789 farnesyltranstransferase

Probab=100.00  E-value=5.6e-58  Score=421.46  Aligned_cols=249  Identities=70%  Similarity=1.243  Sum_probs=231.9

Q ss_pred             cccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 023284           13 AERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQI   92 (284)
Q Consensus        13 ~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~   92 (284)
                      ++++||++||+|+||+|||+++|++|||+|.|+|+|.+||++||+++.+++++++||.+|+++|++||+++++|++||.+
T Consensus         1 ~~~~~~~~~~~~~d~~p~~~~~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~i   80 (320)
T PLN02789          1 DEWVPLSQRPEWADVTPIPQDDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLC   80 (320)
T ss_pred             CCCCCcccCCCcCCccccCCCCCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHH
Q 023284           93 IETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWED  172 (284)
Q Consensus        93 L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~e  172 (284)
                      |..++..+++||.++++++..+||||++|+||+|++.++|.....+|+++++++|++||+|+|||+||+|++..+++|++
T Consensus        81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e  160 (320)
T PLN02789         81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED  160 (320)
T ss_pred             HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence            99999778999999999999999999999999999999987335789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhh
Q 023284          173 ELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM  252 (284)
Q Consensus       173 eL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~  252 (284)
                      |+++++++|+.||+|+|||++|++++.+++...+...+.++|++++.++|.++|+|+|+|+|+++++...++++..+|++
T Consensus       161 eL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~  240 (320)
T PLN02789        161 ELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEV  240 (320)
T ss_pred             HHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhH
Confidence            99999999999999999999999999887543333334678999999999999999999999999999988888888888


Q ss_pred             HHHHHhhhh
Q 023284          253 LLSVFESFE  261 (284)
Q Consensus       253 ~~~~~~~~~  261 (284)
                      +.-|.+.+.
T Consensus       241 ~~~~~~~~~  249 (320)
T PLN02789        241 SSVCLEVLS  249 (320)
T ss_pred             HHHHHHhhc
Confidence            776666544

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-35  Score=258.60  Aligned_cols=217  Identities=37%  Similarity=0.709  Sum_probs=190.1

Q ss_pred             CCCccccCCC-CCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-----
Q 023284           24 WSDVTPIPQD-DGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-----   97 (284)
Q Consensus        24 ~~dv~pi~~~-~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-----   97 (284)
                      +.+|.|.|.. +..++.+.|.|..+|...++++++...+.++|.+||++|..+|..||+++++|+||+.++.+..     
T Consensus         6 ~~r~~~~~~q~~l~~~l~ri~~~e~y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sed   85 (328)
T COG5536           6 LRRVKPLPIQFDLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSED   85 (328)
T ss_pred             chhccccccchhhhhHHHHHHhhhccchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhccc
Confidence            4567777653 4578999999999999999999999999999999999999999999999999999999999832     


Q ss_pred             --hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH------HHccC
Q 023284           98 --TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL------QALGG  169 (284)
Q Consensus        98 --~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl------~~l~~  169 (284)
                        .-+..+|++++.++.-+||+|++|+||+|++.......+..|+.+++++|+.||+|||+|+||.|++      ..+..
T Consensus        86 k~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~  165 (328)
T COG5536          86 KEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSD  165 (328)
T ss_pred             chhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchh
Confidence              2368999999999999999999999999999998555599999999999999999999999999999      44445


Q ss_pred             cHHHHHHHHHHHhccCCChHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284          170 WEDELDYCQMLLGEDIFNNSAWNQRYFVVTR---SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD  241 (284)
Q Consensus       170 ~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~---l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~  241 (284)
                      +..++++...+|+.|+.|+|||+||..+...   -+.... +..+++||++..+++..+|+|.|+|.|+++++..
T Consensus       166 ~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~vis-qk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~  239 (328)
T COG5536         166 LKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVIS-QKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE  239 (328)
T ss_pred             HHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence            6889999999999999999999999544332   222211 1247899999999999999999999999999887

>PLN02789 farnesyltranstransferase

Probab=100.00  E-value=6.3e-33  Score=255.36  Aligned_cols=198  Identities=25%  Similarity=0.416  Sum_probs=174.9

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC-HHHHHHHHHHHHHhCCCC
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDE-RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD-LQDELAFVGRIAKSNSKN  117 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~-~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~-~~~eL~~~~~~l~~~pkn  117 (284)
                      ..|++||++.++|++|+.++...+ ..+++|++++++|+.||+++++|+||++++..++.. +++|+.+++++|..+|||
T Consensus        62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN  141 (320)
T PLN02789         62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN  141 (320)
T ss_pred             HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc
Confidence            678899999999999999999887 458999999999999999999999999999999852 478999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc---cCc----HHHHHHHHHHHhccCCChHH
Q 023284          118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL---GGW----EDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l---~~~----~eeL~~~~~~l~~dp~n~sA  190 (284)
                      ++||+||+|++..+|.  +++||++|+++|++||+|++||+||++++.++   +.+    ++|++++.++|.++|+|.||
T Consensus       142 y~AW~~R~w~l~~l~~--~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~Sa  219 (320)
T PLN02789        142 YHAWSHRQWVLRTLGG--WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESP  219 (320)
T ss_pred             HHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCH
Confidence            9999999999999999  99999999999999999999999999999887   333    58999999999999999999


Q ss_pred             HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284          191 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD  242 (284)
Q Consensus       191 W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~  242 (284)
                      |+|++.++...+..  . ....++++++.+++..+|++.-+-.++.-++...
T Consensus       220 W~Yl~~ll~~~~~~--l-~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        220 WRYLRGLFKDDKEA--L-VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHHHhcCCcc--c-ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            99999999874321  0 0014467888999999998888877777777653

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-31  Score=246.83  Aligned_cols=192  Identities=34%  Similarity=0.584  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-----------CHHHHHHHHHHHHHhCCCCh
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-----------DLQDELAFVGRIAKSNSKNY  118 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-----------~~~~eL~~~~~~l~~~pkn~  118 (284)
                      .+++.+-.....++++.+++.++..++..||+.+++||+|+.++.....           .+.++|.+...++..|||+|
T Consensus        30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY  109 (421)
T KOG0529|consen   30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY  109 (421)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence            3444444445568899999999999999999999999999999876432           36799999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC----cHHHHHHHHHHHhccCCChHHHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG----WEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~----~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      .+|+||+|+|.+.+...+..||.+|+++|+.||+|||+|+||.+|+....+    ..+|+++++++|..|++|+|||+||
T Consensus       110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyR  189 (421)
T KOG0529|consen  110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYR  189 (421)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHH
Confidence            999999999999886568999999999999999999999999999988764    6899999999999999999999999


Q ss_pred             HHHHhcCCCC--ch---hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284          195 YFVVTRSPLL--GG---LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD  241 (284)
Q Consensus       195 ~~ll~~l~~~--~~---~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~  241 (284)
                      ..+|..+-.-  ++   ...++.+|++++.+||..+|+|+|+|.|.+.++..
T Consensus       190 s~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  190 SLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR  241 (421)
T ss_pred             HHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence            9999876321  22   23567899999999999999999999999999987

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.1e-28  Score=211.40  Aligned_cols=158  Identities=31%  Similarity=0.498  Sum_probs=146.4

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHH-HHHHHHHHHHHhCCCC
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDERS-SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ-DELAFVGRIAKSNSKN  117 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~s-~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~-~eL~~~~~~l~~~pkn  117 (284)
                      -.|.+||.++++|.|||.++....-. .+.|+..+.++.-||+||++|+||+.+++.+| +.. .||+|+..+|..+.||
T Consensus        68 d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKN  146 (318)
T KOG0530|consen   68 DAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKN  146 (318)
T ss_pred             HHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccc
Confidence            56889999999999999999876543 68999999999999999999999999999999 566 9999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC------cHHHHHHHHHHHhccCCChHHH
Q 023284          118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG------WEDELDYCQMLLGEDIFNNSAW  191 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~------~~eeL~~~~~~l~~dp~n~sAW  191 (284)
                      ||||.||+|+++.++.  +++||++++.+|+.|.+|.+||+||.+++.....      .+.|+.++.+.|...|.|.|||
T Consensus       147 YHaWshRqW~~r~F~~--~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaW  224 (318)
T KOG0530|consen  147 YHAWSHRQWVLRFFKD--YEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAW  224 (318)
T ss_pred             hhhhHHHHHHHHHHhh--HHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHH
Confidence            9999999999999998  9999999999999999999999999999876332      3789999999999999999999


Q ss_pred             HHHHHHHhc
Q 023284          192 NQRYFVVTR  200 (284)
Q Consensus       192 ~~r~~ll~~  200 (284)
                      +|...++..
T Consensus       225 nYL~G~l~~  233 (318)
T KOG0530|consen  225 NYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHh
Confidence            999888876

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.1e-25  Score=205.30  Aligned_cols=160  Identities=26%  Similarity=0.519  Sum_probs=142.8

Q ss_pred             eeecChhHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC-HHHHHHHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDE------------RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD-LQDELAFV  107 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~------------~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~-~~~eL~~~  107 (284)
                      .+.-||++..+|+++|-++....            ..++.|.+...+|+.||+.|.+|++|+++|++.+.. ++.||.++
T Consensus        55 ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lc  134 (421)
T KOG0529|consen   55 LLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLC  134 (421)
T ss_pred             HHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            45579999999999998876432            235789999999999999999999999999998866 99999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc------cC------cHHH
Q 023284          108 GRIAKSNSKNYQLWHHRRWVAEKLGTG--AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL------GG------WEDE  173 (284)
Q Consensus       108 ~~~l~~~pkn~~aW~hR~~ll~~l~~~--~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l------~~------~~ee  173 (284)
                      +++|+.||+||++|+||++++....+.  ...+|+++++++|..+++|||||+||.+++..+      |.      ...|
T Consensus       135 ek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sE  214 (421)
T KOG0529|consen  135 EKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSE  214 (421)
T ss_pred             HHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHH
Confidence            999999999999999999999987542  368999999999999999999999999999865      21      3689


Q ss_pred             HHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          174 LDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       174 L~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      ++.+..++..||.|.|+|+|..+++.+
T Consensus       215 le~v~saiFTdp~DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  215 LEMVHSAIFTDPEDQSCWFYHRWLLGR  241 (421)
T ss_pred             HHHHHHHHhcCccccceeeehHHhhcc
Confidence            999999999999999999999999887

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=7.9e-21  Score=166.95  Aligned_cols=161  Identities=27%  Similarity=0.463  Sum_probs=136.4

Q ss_pred             ceeecChhHHHHHHHHHHHHhc-------C-CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-hCHHHHHHHHHHH
Q 023284           40 VPIAYKPEFSETMSYFRAVYYS-------D-ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-TDLQDELAFVGRI  110 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~-------~-~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-~~~~~eL~~~~~~  110 (284)
                      -.|.-||++.++|+|++.++..       . -+-+..|+..+.+++-||++|+.|+||+++|+... ..++.|+.++.++
T Consensus        57 elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkkl  136 (328)
T COG5536          57 ELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKL  136 (328)
T ss_pred             HHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHH
Confidence            4466789999999999999886       1 12257899999999999999999999999999873 2589999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH---ccC------cHHHHHHH
Q 023284          111 AKSNSKNYQLWHHRRWVAEKLGT----GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA---LGG------WEDELDYC  177 (284)
Q Consensus       111 l~~~pkn~~aW~hR~~ll~~l~~----~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~---l~~------~~eeL~~~  177 (284)
                      |..||+||++|+||+|++....+    ..+.+|+++...+|.-|+.|++||+||-..+..   -|+      ++++|++.
T Consensus       137 ld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i  216 (328)
T COG5536         137 LDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYI  216 (328)
T ss_pred             hcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence            99999999999999999943211    227889999999999999999999999333322   222      58999999


Q ss_pred             HHHHhccCCChHHHHHHHHHHhc
Q 023284          178 QMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       178 ~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      -.++..+|.|.|+|.|.+.+...
T Consensus       217 ~~~if~~p~~~S~w~y~r~~~~~  239 (328)
T COG5536         217 FDKIFTDPDNQSVWGYLRGVSSE  239 (328)
T ss_pred             HhhhhcCccccchhhHHHHHhcc
Confidence            99999999999999999887765

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=5.6e-18  Score=162.34  Aligned_cols=191  Identities=9%  Similarity=0.070  Sum_probs=181.9

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ  119 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~  119 (284)
                      -.|++.|+|.+|++.....++..+.-.+|.++|.++|.++|.++.+-++.+.+....| .++++..+|.+++..+|....
T Consensus       311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~-~~e~A~~ly~~al~v~p~~aa  389 (966)
T KOG4626|consen  311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG-KIEEATRLYLKALEVFPEFAA  389 (966)
T ss_pred             HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-cchHHHHHHHHHHhhChhhhh
Confidence            3578999999999999999999999999999999999999999999999999999999 489999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      +.++.+.++++-|+  +++++.+|..+|.++|....|.+++|..+..+|+.+.|+.++.++|.++|....|.++.+.+.+
T Consensus       390 a~nNLa~i~kqqgn--l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  390 AHNNLASIYKQQGN--LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             hhhhHHHHHHhccc--HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            99999999999999  9999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          200 RSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       200 ~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                      ..|..       .++|+.|.++|++.|+.+.+...+...++
T Consensus       468 DsGni-------~~AI~sY~~aLklkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  468 DSGNI-------PEAIQSYRTALKLKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             ccCCc-------HHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence            88874       78999999999999999999888776655

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.79  E-value=1.5e-17  Score=165.94  Aligned_cols=179  Identities=12%  Similarity=0.006  Sum_probs=167.7

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      +.|+...++..++.+....+..++|+..++++|.++|.+..+|..++.++..+| ++++++..+++++..+|++..+|.+
T Consensus       326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~  404 (615)
T TIGR00990       326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG-DPDKAEEDFDKALKLNSEDPDIYYH  404 (615)
T ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            357777888888888888888899999999999999999999999999999999 6999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~  203 (284)
                      +|.++..+|+  +++++.+++++++++|.+..+|.+++.++..+|++++|+..+++++..+|.+..+++++|.++...++
T Consensus       405 lg~~~~~~g~--~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~  482 (615)
T TIGR00990       405 RAQLHFIKGE--FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK  482 (615)
T ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284          204 LGGLIAMRDSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       204 ~~~~~~~~~~el~~~~~~i~~~P~nesaW  232 (284)
                      +       +++++++++++.++|++...+
T Consensus       483 ~-------~~A~~~~~~Al~l~p~~~~~~  504 (615)
T TIGR00990       483 F-------DEAIEKFDTAIELEKETKPMY  504 (615)
T ss_pred             H-------HHHHHHHHHHHhcCCcccccc
Confidence            4       789999999999999875543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.76  E-value=4.7e-17  Score=162.42  Aligned_cols=207  Identities=9%  Similarity=0.038  Sum_probs=179.6

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      .|.++|++..++..++.++...+..++|+..++++|.++|++..+|++++.++..+| ++++++.++++++.++|++..+
T Consensus       357 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~l~P~~~~~  435 (615)
T TIGR00990       357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG-EFAQAGKDYQKSIDLDPDFIFS  435 (615)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCccCHHH
Confidence            356789999999999999888888899999999999999999999999999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH------HH
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN------QR  194 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~------~r  194 (284)
                      |..++.++..+|+  +++++..++++++.+|.+..+|++.|.++...|++++|+++++++++++|.+...+.      .+
T Consensus       436 ~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~  513 (615)
T TIGR00990       436 HIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK  513 (615)
T ss_pred             HHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence            9999999999999  999999999999999999999999999999999999999999999999998655443      22


Q ss_pred             HHHHhc-CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          195 YFVVTR-SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       195 ~~ll~~-l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      +.++.. .++       ++++++.+.+++.++|++..++..++.++...++    .++++..+-++++
T Consensus       514 a~~~~~~~~~-------~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~----~~eAi~~~e~A~~  570 (615)
T TIGR00990       514 ALALFQWKQD-------FIEAENLCEKALIIDPECDIAVATMAQLLLQQGD----VDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHHhhh-------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC----HHHHHHHHHHHHH
Confidence            322222 233       5788999999999999999888888777776643    5566666655543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=1.4e-17  Score=159.68  Aligned_cols=225  Identities=13%  Similarity=0.126  Sum_probs=177.4

Q ss_pred             CCCCccccCCCCCCC------CcceeecChhHHHHHHHHHHHHhcCCCC-------------------------------
Q 023284           23 EWSDVTPIPQDDGPN------PVVPIAYKPEFSETMSYFRAVYYSDERS-------------------------------   65 (284)
Q Consensus        23 ~~~dv~pi~~~~~~~------~~~~I~~~p~~~~a~~~~r~~~~~~~~s-------------------------------   65 (284)
                      .|++++=+--..|..      =--++.+.|+|.+|+...+.+++.....                               
T Consensus       220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq  299 (966)
T KOG4626|consen  220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ  299 (966)
T ss_pred             eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence            366666655444421      1145678888888887776666643333                               


Q ss_pred             ---HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284           66 ---SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF  142 (284)
Q Consensus        66 ---~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~  142 (284)
                         +=|+..|.++|.+.|.+..|+++.+..|+.+| +..++..|+.++|...|...++-++.|.+....|.  ++++..+
T Consensus       300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G-~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~--~e~A~~l  376 (966)
T KOG4626|consen  300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG-SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK--IEEATRL  376 (966)
T ss_pred             ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc-chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc--chHHHHH
Confidence               44666667777777777777777788888877 47788888888888888888888888888888887  8888888


Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      |.++|+..|....|.++.+.++++-|++++|+.+|..+|++.|....|++++|..++.+|+.       ..+++++.++|
T Consensus       377 y~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v-------~~A~q~y~rAI  449 (966)
T KOG4626|consen  377 YLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV-------SAAIQCYTRAI  449 (966)
T ss_pred             HHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH-------HHHHHHHHHHH
Confidence            88888888888888888888888888888899999999999999889999998888888874       67899999999


Q ss_pred             hcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          223 LGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       223 ~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      .++|.-..+.+.+..+....|+    -|++|.++..+|.
T Consensus       450 ~~nPt~AeAhsNLasi~kDsGn----i~~AI~sY~~aLk  484 (966)
T KOG4626|consen  450 QINPTFAEAHSNLASIYKDSGN----IPEAIQSYRTALK  484 (966)
T ss_pred             hcCcHHHHHHhhHHHHhhccCC----cHHHHHHHHHHHc
Confidence            9999999999999999887765    4788888888754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=7.9e-16  Score=126.23  Aligned_cols=127  Identities=11%  Similarity=-0.034  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023284           69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLS  148 (284)
Q Consensus        69 L~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~  148 (284)
                      -.+++++|.++|++   +..++.++...| ++++++.+++.++..+|.++.+|..+|.++..+|+  +++++.++.++++
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~y~~Al~   86 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEG-DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--YTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--HHHHHHHHHHHHh
Confidence            46789999999997   567899999999 59999999999999999999999999999999999  9999999999999


Q ss_pred             hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          149 LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       149 ~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      ++|.+..+|+++|.++..+|++++|++.++++|+.+|.|..+|..|+.+...+
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999886543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=1.8e-16  Score=153.20  Aligned_cols=192  Identities=13%  Similarity=0.079  Sum_probs=171.7

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      |.-+|+-++.|...+.++.-++..+.|++++.++|+++|.+.-|+--.|.=+.... .+++++.+|+++|..+|++|.||
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e-e~d~a~~~fr~Al~~~~rhYnAw  492 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE-EFDKAMKSFRKALGVDPRHYNAW  492 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH-HHHhHHHHHHhhhcCCchhhHHH
Confidence            55677888899999999888888899999999999999998888766666555555 58999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      +.-|.++.+.++  ++.|.-.+.+|++++|+|--.-.|-|-++.++|+.++||..+++|+-+||.|.-.-++|+.++..+
T Consensus       493 YGlG~vy~Kqek--~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  493 YGLGTVYLKQEK--LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL  570 (638)
T ss_pred             Hhhhhheeccch--hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence            999999999988  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          202 PLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       202 ~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      +++       ++|+.-.+++-++.|++.++..-++-++..++
T Consensus       571 ~~~-------~eal~~LEeLk~~vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  571 GRY-------VEALQELEELKELVPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             cch-------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence            986       67788888888899999888866666666543

>PRK12370 invasion protein regulator; Provisional

Probab=99.68  E-value=2.7e-15  Score=148.14  Aligned_cols=194  Identities=12%  Similarity=0.056  Sum_probs=166.9

Q ss_pred             ceeecChhHHHHHHHHHHHHh---c------CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 023284           40 VPIAYKPEFSETMSYFRAVYY---S------DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRI  110 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~---~------~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~  110 (284)
                      -+|+++|++..++.....+..   .      .+..++|+..++++++++|++..+|..++.++...| ++++++..++++
T Consensus       286 ~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-~~~~A~~~~~~A  364 (553)
T PRK12370        286 QCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS-EYIVGSLLFKQA  364 (553)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Confidence            346788888887765554322   1      122478999999999999999999999999999989 699999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc-CCChH
Q 023284          111 AKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED-IFNNS  189 (284)
Q Consensus       111 l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d-p~n~s  189 (284)
                      +..+|.+..+|++.+.++...|+  +++++..++++++++|.+..++.+++.++...|++++|++.+.++++.+ |++..
T Consensus       365 l~l~P~~~~a~~~lg~~l~~~G~--~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~  442 (553)
T PRK12370        365 NLLSPISADIKYYYGWNLFMAGQ--LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI  442 (553)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence            99999999999999999999999  9999999999999999998888888888888999999999999999886 78888


Q ss_pred             HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      ++.+.+.++..+|+.       +++.+.+.+++...|.+..+++.+...+...+
T Consensus       443 ~~~~la~~l~~~G~~-------~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        443 LLSMQVMFLSLKGKH-------ELARKLTKEISTQEITGLIAVNLLYAEYCQNS  489 (553)
T ss_pred             HHHHHHHHHHhCCCH-------HHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence            899999999889884       77888888888888888888877766655443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.68  E-value=3.7e-15  Score=136.21  Aligned_cols=207  Identities=7%  Similarity=-0.059  Sum_probs=157.0

Q ss_pred             cChhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284           44 YKPEF-SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH  122 (284)
Q Consensus        44 ~~p~~-~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~  122 (284)
                      ++|+. ..++..++.++...+..++|+..++++|+++|++..+|+.+|.++..+| ++++++..++++++++|++..+|.
T Consensus        58 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~  136 (296)
T PRK11189         58 LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAYL  136 (296)
T ss_pred             CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44444 6778888888888888899999999999999999999999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      .+|.++...|+  ++++++.++++++++|.+....... .+....+++++|++.+.+.+...+.+...|   +.+...++
T Consensus       137 ~lg~~l~~~g~--~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg  210 (296)
T PRK11189        137 NRGIALYYGGR--YELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLG  210 (296)
T ss_pred             HHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHcc
Confidence            99999999999  9999999999999999997321111 123445678999999988776654443333   23333345


Q ss_pred             CCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          203 LLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       203 ~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      +.... ..++..++.+...++++|+...+|+|++.++...++    .++++.++.++++-
T Consensus       211 ~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~----~~~A~~~~~~Al~~  265 (296)
T PRK11189        211 KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD----LDEAAALFKLALAN  265 (296)
T ss_pred             CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHh
Confidence            44321 122333344445556777777889888888776643    66777777777653

>PRK12370 invasion protein regulator; Provisional

Probab=99.66  E-value=1.3e-14  Score=143.33  Aligned_cols=169  Identities=11%  Similarity=0.042  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT--------DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN  137 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~--------~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~  137 (284)
                      ++|++++++++.++|++..+|...+.+...++.        ++.+++..+++++..+|++..+|..++.++...|+  ++
T Consensus       278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~--~~  355 (553)
T PRK12370        278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE--YI  355 (553)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HH
Confidence            689999999999999999999999887665432        37899999999999999999999999999999999  99


Q ss_pred             HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 023284          138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNF  217 (284)
Q Consensus       138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~  217 (284)
                      +++..++++++++|.+..+|++.+.++...|++++|+..++++++++|.+..++..++.++...+++       +++++.
T Consensus       356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~-------eeA~~~  428 (553)
T PRK12370        356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI-------DDAIRL  428 (553)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH-------HHHHHH
Confidence            9999999999999999999999999999999999999999999999999988777777666666663       778999


Q ss_pred             HHHHHhcC-CCCccHHHHHHHHHccCC
Q 023284          218 TIEAILGN-PENESPWRYLRGLYKDDT  243 (284)
Q Consensus       218 ~~~~i~~~-P~nesaW~y~~~ll~~~~  243 (284)
                      +.+++..+ |+++.++.+++.++...+
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G  455 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKG  455 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCC
Confidence            99999875 778888877777765543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.64  E-value=3.7e-14  Score=142.70  Aligned_cols=191  Identities=8%  Similarity=0.010  Sum_probs=119.0

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +..+|++..++...+.++...+..++|++.+++++.++|++..+|..++.++...| ++++++..+.+++..+|.+..++
T Consensus       103 l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~~~~a~  181 (656)
T PRK15174        103 LAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD-KELQAISLARTQAQEVPPRGDMI  181 (656)
T ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCCCHHHH
Confidence            44566666666666666666666677777777777777777777777777666666 35566666666666665555554


Q ss_pred             HHH----------------------------------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284          122 HHR----------------------------------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL  167 (284)
Q Consensus       122 ~hR----------------------------------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l  167 (284)
                      ...                                  +.++...|+  +++++..+.++++.+|.+..++...+.++...
T Consensus       182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~--~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~  259 (656)
T PRK15174        182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK--YQEAIQTGESALARGLDGAALRRSLGLAYYQS  259 (656)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            322                                  112222333  55566666666666666666666666666666


Q ss_pred             cCcHH----HHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284          168 GGWED----ELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD  242 (284)
Q Consensus       168 ~~~~e----eL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~  242 (284)
                      |++++    |+..++++++.+|++..++..++.++...+++       ++++..+++++.++|++..++.++..++...
T Consensus       260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-------~eA~~~l~~al~l~P~~~~a~~~La~~l~~~  331 (656)
T PRK15174        260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN-------EKAIPLLQQSLATHPDLPYVRAMYARALRQV  331 (656)
T ss_pred             CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            66654    56666666666666666666666666666653       5566666666777777666666665555443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.63  E-value=7.2e-15  Score=120.53  Aligned_cols=125  Identities=7%  Similarity=-0.080  Sum_probs=116.1

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284          105 AFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       105 ~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      ..+++++..+|.+   +.+++.++...|+  +++++.++.+++.++|.+..+|..+|.++..+|++++|+.++.++++++
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGD--YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            5689999999996   6688999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284          185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD  241 (284)
Q Consensus       185 p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~  241 (284)
                      |.+..+|+++|.++..+|++       ++++..++++|...|+++..|..++.....
T Consensus        89 p~~~~a~~~lg~~l~~~g~~-------~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEP-------GLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            99999999999999999984       789999999999999999999776655443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=3.2e-15  Score=144.58  Aligned_cols=180  Identities=18%  Similarity=0.169  Sum_probs=163.6

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      +|+++|.|.-|+...+-=....+-.+.|..+|..+|..+|.||-||+..|.+..+.++ ++.|.-.|.+|+.+||.|...
T Consensus       447 AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek-~e~Ae~~fqkA~~INP~nsvi  525 (638)
T KOG1126|consen  447 AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK-LEFAEFHFQKAVEINPSNSVI  525 (638)
T ss_pred             hhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch-hhHHHHHHHhhhcCCccchhH
Confidence            5778888888877776655555556899999999999999999999999999999995 899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      -.|-|.++.++|+  .+++|.++++|+.+||+|.++=++|+.++..++++++||.-++++-+.-|++.++++-.|.+..+
T Consensus       526 ~~~~g~~~~~~k~--~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~  603 (638)
T KOG1126|consen  526 LCHIGRIQHQLKR--KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR  603 (638)
T ss_pred             HhhhhHHHHHhhh--hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            9999999999999  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          201 SPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       201 l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      +++.       +.++.-+.-|..++|.-..
T Consensus       604 ~~~~-------~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  604 LGNT-------DLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             Hccc-------hHHHHhhHHHhcCCCccch
Confidence            9875       4567777788888887543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.61  E-value=1.2e-13  Score=139.10  Aligned_cols=204  Identities=7%  Similarity=-0.067  Sum_probs=159.4

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHH--------------------------------
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFR--------------------------------   89 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R--------------------------------   89 (284)
                      +.++|+...++.....++...+..++|+..+..++..+|++..++...                                
T Consensus       137 l~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~  216 (656)
T PRK15174        137 WLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAG  216 (656)
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHH
Confidence            455677776666666666666666666666666666666666555332                                


Q ss_pred             --HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHhCcCChhHHhHHHHH
Q 023284           90 --RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNK----ELQFTKKMLSLDAKNYHAWSYRQWV  163 (284)
Q Consensus        90 --~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~e----el~~~~~aL~~dpkN~~AW~~r~~v  163 (284)
                        +.++...| ++++++..+++++..+|.+..++...+.++...|+  +++    ++..++++++++|.+..+|...+.+
T Consensus       217 ~l~~~l~~~g-~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~--~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~  293 (656)
T PRK15174        217 LAVDTLCAVG-KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR--SREAKLQAAEHWRHALQFNSDNVRIVTLYADA  293 (656)
T ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence              33344445 57889999999999999999999999999999998  765    7999999999999999999999999


Q ss_pred             HHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          164 LQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       164 l~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      +...|++++|+..++++++.+|.+..++.+++.++...+++       +++++.+.+++..+|++.....+...++...+
T Consensus       294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~-------~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G  366 (656)
T PRK15174        294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY-------TAASDEFVQLAREKGVTSKWNRYAAAALLQAG  366 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999998884       77899999999999998765544444444433


Q ss_pred             ccCCCChhhHHHHHhh
Q 023284          244 ESWINDPRMLLSVFES  259 (284)
Q Consensus       244 ~~~~~~~~~~~~~~~~  259 (284)
                          +..+++..+..+
T Consensus       367 ----~~deA~~~l~~a  378 (656)
T PRK15174        367 ----KTSEAESVFEHY  378 (656)
T ss_pred             ----CHHHHHHHHHHH
Confidence                234444444444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.60  E-value=5.4e-13  Score=113.67  Aligned_cols=183  Identities=8%  Similarity=0.002  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA  128 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll  128 (284)
                      ..++...+..+...+..++|++.+++++..+|.+..++..++.+....| +++++++.+++++..+|++..++...+.++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            4566667777777888899999999999999999999999999999999 699999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhC--cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch
Q 023284          129 EKLGTGAVNKELQFTKKMLSLD--AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG  206 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~~d--pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~  206 (284)
                      ...|+  +++++..+.+++...  +.....|...+.++...|+++++..++.+++..+|.+..++..++.++...+++  
T Consensus       110 ~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--  185 (234)
T TIGR02521       110 CQQGK--YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY--  185 (234)
T ss_pred             HHccc--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH--
Confidence            99999  999999999999853  567789999999999999999999999999999999999999999998888874  


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284          207 LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD  241 (284)
Q Consensus       207 ~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~  241 (284)
                           ++++.++.+++...|.+...+.....+...
T Consensus       186 -----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (234)
T TIGR02521       186 -----KDARAYLERYQQTYNQTAESLWLGIRIARA  215 (234)
T ss_pred             -----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                 778889999998888887766555444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.58  E-value=2.4e-13  Score=141.46  Aligned_cols=170  Identities=9%  Similarity=-0.042  Sum_probs=147.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284           52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l  131 (284)
                      +...+.++...+..++|+.++.+++..+|.+..+.......+...| ++++++..+++++..+|. ..+|...+.++.++
T Consensus       545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G-r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l  622 (987)
T PRK09782        545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG-QPELALNDLTRSLNIAPS-ANAYVARATIYRQR  622 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC
Confidence            3333444555667788999999999999998777665444444557 699999999999999996 99999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhH
Q 023284          132 GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMR  211 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~  211 (284)
                      |+  +++++.++.++++++|.|..++++.+.++...|++++|++.+.++++.+|.+..+|.+++.++..+|++       
T Consensus       623 G~--~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~-------  693 (987)
T PRK09782        623 HN--VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM-------  693 (987)
T ss_pred             CC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------
Confidence            99  999999999999999999999999999999999999999999999999999999999999999999984       


Q ss_pred             HHHHHHHHHHHhcCCCCccHH
Q 023284          212 DSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       212 ~~el~~~~~~i~~~P~nesaW  232 (284)
                      ++++.+++++|.++|++..+-
T Consensus       694 ~eA~~~l~~Al~l~P~~a~i~  714 (987)
T PRK09782        694 AATQHYARLVIDDIDNQALIT  714 (987)
T ss_pred             HHHHHHHHHHHhcCCCCchhh
Confidence            778999999999999886643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.57  E-value=5.7e-13  Score=134.82  Aligned_cols=157  Identities=9%  Similarity=0.059  Sum_probs=82.9

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +..+|++..++.....++...+..++|+.+++.++...|.+..++...+.++...| +++++++.+.+++..+|++ .++
T Consensus       662 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~-~~~  739 (899)
T TIGR02917       662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK-DYPAAIQAYRKALKRAPSS-QNA  739 (899)
T ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCc-hHH
Confidence            34456655565555555555555555555555555555555555555555555555 3555555555555555544 444


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      ...+.++...|+  +.+++..+.++++.+|.+..+++..+.++...|++++|++.++++++.+|.+..++++.+.+....
T Consensus       740 ~~l~~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       740 IKLHRALLASGN--TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            444444444554  555555555555555555555555555555555555555555555555555555555444444443


Q ss_pred             C
Q 023284          202 P  202 (284)
Q Consensus       202 ~  202 (284)
                      +
T Consensus       818 ~  818 (899)
T TIGR02917       818 K  818 (899)
T ss_pred             C
Confidence            3

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=9.6e-14  Score=130.53  Aligned_cols=193  Identities=13%  Similarity=0.116  Sum_probs=172.5

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ  119 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~  119 (284)
                      ..|.+.|.+...+-++.+++...+.+++..+.+.++..+||.+..+++|||++..-++ .+++++.-|++++.++|.|.-
T Consensus       351 ~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~-q~e~A~aDF~Kai~L~pe~~~  429 (606)
T KOG0547|consen  351 AAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ-QYEEAIADFQKAISLDPENAY  429 (606)
T ss_pred             HHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH-HHHHHHHHHHHHhhcChhhhH
Confidence            4577778888888888888888999999999999999999999999999999999998 599999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC------ChHHHHH
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF------NNSAWNQ  193 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~------n~sAW~~  193 (284)
                      +...++.++.+.++  +++....++.+.++-|+...+.+.-+-+|..-+.|+.|++.|+++|++.|.      |.....+
T Consensus       430 ~~iQl~~a~Yr~~k--~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~  507 (606)
T KOG0547|consen  430 AYIQLCCALYRQHK--IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH  507 (606)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence            99999999999988  999999999999999999999999999999999999999999999999999      9999999


Q ss_pred             HHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284          194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD  241 (284)
Q Consensus       194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~  241 (284)
                      ++.++.+-..      -+..+++.+.++|+++|..+-+.--++.+...
T Consensus       508 Ka~l~~qwk~------d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ  549 (606)
T KOG0547|consen  508 KALLVLQWKE------DINQAENLLRKAIELDPKCEQAYETLAQFELQ  549 (606)
T ss_pred             hhHhhhchhh------hHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            9988766221      14778999999999999999887665554433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.56  E-value=6.3e-13  Score=121.50  Aligned_cols=152  Identities=9%  Similarity=-0.049  Sum_probs=127.4

Q ss_pred             CCHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 023284           64 RSSRSFQLTKEAICLNP---G-NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKE  139 (284)
Q Consensus        64 ~s~~aL~~~~~~L~lnP---~-~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ee  139 (284)
                      .++.++..+.++|...|   . ...+|+.||.++..+| ..++++..+++++..+|+++.+|+++|.++...|+  ++++
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~--~~~A  117 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG-LRALARNDFSQALALRPDMADAYNYLGIYLTQAGN--FDAA  117 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--HHHH
Confidence            35778888889996444   3 3788999999999999 59999999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 023284          140 LQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI  219 (284)
Q Consensus       140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~  219 (284)
                      ++.++++++++|.+..+|.++|.++...|++++|++.++++++++|.+.....+.. +....++       .+++++.+.
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~-l~~~~~~-------~~~A~~~l~  189 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLY-LAESKLD-------PKQAKENLK  189 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHccCC-------HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999973221111 2222233       367888887


Q ss_pred             HHHhcCC
Q 023284          220 EAILGNP  226 (284)
Q Consensus       220 ~~i~~~P  226 (284)
                      +++...+
T Consensus       190 ~~~~~~~  196 (296)
T PRK11189        190 QRYEKLD  196 (296)
T ss_pred             HHHhhCC
Confidence            7665443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.55  E-value=1.1e-12  Score=132.84  Aligned_cols=186  Identities=12%  Similarity=0.071  Sum_probs=149.9

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      .|....++...+.++...+..++|+..+++++..+|++..+|..++.++...| +++++++.+++++..+|.+..+|..+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~  199 (899)
T TIGR02917       121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-RFDEARALIDEVLTADPGNVDALLLK  199 (899)
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45556677777777777777788999999999999999888988888888888 58889999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      +.++...|+  +++++.++.++++.+|.+..+|..++.++...|++++|...++++++.+|.+..++..++.+....+++
T Consensus       200 ~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (899)
T TIGR02917       200 GDLLLSLGN--IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY  277 (899)
T ss_pred             HHHHHhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCH
Confidence            888888888  889999999999999999899988888888888888888888888888888888888888777666653


Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          205 GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       205 ~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                             ++++..+.+++..+|++..++..++.++.
T Consensus       278 -------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  306 (899)
T TIGR02917       278 -------EDARETLQDALKSAPEYLPALLLAGASEY  306 (899)
T ss_pred             -------HHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence                   55666666666667666655544444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.53  E-value=1.2e-12  Score=136.18  Aligned_cols=186  Identities=8%  Similarity=-0.047  Sum_probs=146.6

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284           61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL  140 (284)
Q Consensus        61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel  140 (284)
                      ..++.++|+..+.+++...|. ..+|...+.++...| +.++++.++++++..+|.+..........+...|+  +++++
T Consensus       521 ~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~G-d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr--~~eAl  596 (987)
T PRK09782        521 QVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAG-NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ--PELAL  596 (987)
T ss_pred             HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence            344455666666665554333 334555566666666 57888888888888888887666544444445588  99999


Q ss_pred             HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284          141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE  220 (284)
Q Consensus       141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~  220 (284)
                      ..+.++++++|. ..+|...+.++.++|++++|+.++.++++.+|.|..++++.+.++...++.       +++++.+.+
T Consensus       597 ~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-------eeAi~~l~~  668 (987)
T PRK09782        597 NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-------AQSREMLER  668 (987)
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHH
Confidence            999999999995 999999999999999999999999999999999999999999999998874       788999999


Q ss_pred             HHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          221 AILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       221 ~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      +++++|++..+|+.+..++...++    .+++...+-++++-
T Consensus       669 AL~l~P~~~~a~~nLA~al~~lGd----~~eA~~~l~~Al~l  706 (987)
T PRK09782        669 AHKGLPDDPALIRQLAYVNQRLDD----MAATQHYARLVIDD  706 (987)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhc
Confidence            999999999999998888877654    45666666666443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.52  E-value=3.4e-12  Score=119.54  Aligned_cols=219  Identities=11%  Similarity=0.029  Sum_probs=129.6

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT-----VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ  119 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~-----aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~  119 (284)
                      +|....++.....++.+.+..++|++.+..++...|.+..     .+...+.++...+ ++++++..+++++..+|.+..
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~  215 (389)
T PRK11788        137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG-DLDAARALLKKALAADPQCVR  215 (389)
T ss_pred             CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhHCcCCHH
Confidence            4444445555555555555556666666666666555421     2333444444445 466666666666666666666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh-hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY-HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~-~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      ++...+.++...|+  ++++++.++++++.+|.+. .++...+.++...|++++|+..++++++.+|++..+ ...+.++
T Consensus       216 ~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~  292 (389)
T PRK11788        216 ASILLGDLALAQGD--YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLL  292 (389)
T ss_pred             HHHHHHHHHHHCCC--HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence            66666666666666  6666666666666666653 345555666666666666777777766666655433 5555555


Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC--CccCCCChhhHHHHHhhhhccccccccccCCCC
Q 023284          199 TRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD--TESWINDPRMLLSVFESFEYQKQLCFCSEHTFR  275 (284)
Q Consensus       199 ~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (284)
                      .+.++       +++++..+.+++..+|++......+...+...  ++.-...+.+-.-..+.+.++.++. |+..-|.
T Consensus       293 ~~~g~-------~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~-c~~cg~~  363 (389)
T PRK11788        293 EEQEG-------PEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR-CRNCGFT  363 (389)
T ss_pred             HHhCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE-CCCCCCC
Confidence            55555       47788999999999999876554444444222  2222223333334444567777765 7655443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.52  E-value=1.3e-12  Score=139.04  Aligned_cols=182  Identities=12%  Similarity=0.076  Sum_probs=113.5

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH--HH------------HHHHHHHHHhhhCHHHHHHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT--VW------------HFRRQIIETLHTDLQDELAFV  107 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~--aW------------~~R~~~L~~l~~~~~~eL~~~  107 (284)
                      +..+|++.+++...+.++...+..++|+.+++++++++|++..  .|            ..++.++...| ++++++..+
T Consensus       296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g-~~~eA~~~~  374 (1157)
T PRK11447        296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN-NLAQAERLY  374 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence            4456666666666666666666666666666666666666532  12            12233334444 466666666


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH-----------------------
Q 023284          108 GRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL-----------------------  164 (284)
Q Consensus       108 ~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl-----------------------  164 (284)
                      ++++..+|.+..++...+.++...|+  ++++++.++++++++|.|..++...+.++                       
T Consensus       375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~  452 (1157)
T PRK11447        375 QQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI  452 (1157)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence            66666677666666666666666666  67777777777777777666654443332                       


Q ss_pred             -------------------HHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC
Q 023284          165 -------------------QALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN  225 (284)
Q Consensus       165 -------------------~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~  225 (284)
                                         ...|++++|+++++++++++|++..++..++.++...+++       ++++..+++++..+
T Consensus       453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~-------~~A~~~l~~al~~~  525 (1157)
T PRK11447        453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR-------SQADALMRRLAQQK  525 (1157)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcC
Confidence                               1235566667777777777777666666666666666653       56677777777777


Q ss_pred             CCCccHHH
Q 023284          226 PENESPWR  233 (284)
Q Consensus       226 P~nesaW~  233 (284)
                      |++..+++
T Consensus       526 P~~~~~~~  533 (1157)
T PRK11447        526 PNDPEQVY  533 (1157)
T ss_pred             CCCHHHHH
Confidence            77776663

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.50  E-value=7.6e-13  Score=126.58  Aligned_cols=195  Identities=12%  Similarity=0.085  Sum_probs=158.9

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHH-------------
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-------------  106 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~-------------  106 (284)
                      ++|.-+|++.+||...+.+-...+....|+..+.++++++|+|-+|....+.....-|. =.+|+++             
T Consensus       310 AAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~-q~~Al~~L~~Wi~~~p~y~~  388 (579)
T KOG1125|consen  310 AAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL-QNQALKMLDKWIRNKPKYVH  388 (579)
T ss_pred             HHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCccchh
Confidence            56778999999999999999999998999999999999999999888776655443331 1233333             


Q ss_pred             ----------------------------HHHHHHhCC--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284          107 ----------------------------VGRIAKSNS--KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA  156 (284)
Q Consensus       107 ----------------------------~~~~l~~~p--kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~A  156 (284)
                                                  |-.+...+|  .++.+-.-.|.++.-.|.  ++++++|++.||..+|.|+..
T Consensus       389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e--fdraiDcf~~AL~v~Pnd~~l  466 (579)
T KOG1125|consen  389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE--FDRAVDCFEAALQVKPNDYLL  466 (579)
T ss_pred             ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH--HHHHHHHHHHHHhcCCchHHH
Confidence                                        344444444  455555555555555555  999999999999999999999


Q ss_pred             HhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC----C----
Q 023284          157 WSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE----N----  228 (284)
Q Consensus       157 W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~----n----  228 (284)
                      |+..|..+..-.+.++|++.|.+++++-|+...++++.|....++|.|       ++++.++..+|.+.++    +    
T Consensus       467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y-------kEA~~hlL~AL~mq~ks~~~~~~~~  539 (579)
T KOG1125|consen  467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY-------KEAVKHLLEALSMQRKSRNHNKAPM  539 (579)
T ss_pred             HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH-------HHHHHHHHHHHHhhhcccccccCCc
Confidence            999999999999999999999999999999999999999999999874       8899999999987776    2    


Q ss_pred             --ccHHHHHHHHHccCCc
Q 023284          229 --ESPWRYLRGLYKDDTE  244 (284)
Q Consensus       229 --esaW~y~~~ll~~~~~  244 (284)
                        +.+|.++|..+..+++
T Consensus       540 ~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  540 ASENIWQTLRLALSAMNR  557 (579)
T ss_pred             chHHHHHHHHHHHHHcCC
Confidence              3499999977776654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.49  E-value=5e-12  Score=134.70  Aligned_cols=197  Identities=11%  Similarity=-0.022  Sum_probs=158.5

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH--HH------------
Q 023284           56 RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ--LW------------  121 (284)
Q Consensus        56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~--aW------------  121 (284)
                      +..+...+..++|+..+.++|+++|++..++...+.++...| ++++++.++++++..+|++..  .|            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g-~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQG-DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            344445667789999999999999999999999999999999 699999999999999998763  23            


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      ..++.++...|+  +++++..+.++++++|.+..++...+.++...|++++|+++++++++++|.|..++...+.++...
T Consensus       355 ~~~g~~~~~~g~--~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        355 IQQGDAALKANN--LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            223455566777  999999999999999999999999999999999999999999999999999999998777665321


Q ss_pred             CCCch------------------------------------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCcc
Q 023284          202 PLLGG------------------------------------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES  245 (284)
Q Consensus       202 ~~~~~------------------------------------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~  245 (284)
                       ..++                                    ...-++++++.++++++++|++..++..+..++...++ 
T Consensus       433 -~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-  510 (1157)
T PRK11447        433 -SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-  510 (1157)
T ss_pred             -CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence             0000                                    00125788999999999999998888777777766543 


Q ss_pred             CCCChhhHHHHHhhh
Q 023284          246 WINDPRMLLSVFESF  260 (284)
Q Consensus       246 ~~~~~~~~~~~~~~~  260 (284)
                         ..+++..+.+++
T Consensus       511 ---~~~A~~~l~~al  522 (1157)
T PRK11447        511 ---RSQADALMRRLA  522 (1157)
T ss_pred             ---HHHHHHHHHHHH
Confidence               445555555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.47  E-value=1.1e-11  Score=105.54  Aligned_cols=174  Identities=10%  Similarity=0.032  Sum_probs=151.0

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC--CCChH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN--SKNYQ  119 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~--pkn~~  119 (284)
                      +...|+...++...+.+....+..++|++.+.+++..+|.+..++...+.++...| ++++++..+++++...  |....
T Consensus        58 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~  136 (234)
T TIGR02521        58 LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG-KYEQAMQQFEQAIEDPLYPQPAR  136 (234)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhccccccchH
Confidence            45678888888888888888888899999999999999999999999999999999 6999999999999853  67788


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      +|...+.++...|+  ++++...+.++++.+|.+..+|...+.++...|++++|+.++++++...|.+...+...+.+..
T Consensus       137 ~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (234)
T TIGR02521       137 SLENAGLCALKAGD--FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIAR  214 (234)
T ss_pred             HHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999  9999999999999999999999999999999999999999999999999988888887777766


Q ss_pred             cCCCCchhhhhHHHHHHHHHHHHhcC
Q 023284          200 RSPLLGGLIAMRDSEVNFTIEAILGN  225 (284)
Q Consensus       200 ~l~~~~~~~~~~~~el~~~~~~i~~~  225 (284)
                      ..+..       +++..+...+....
T Consensus       215 ~~~~~-------~~a~~~~~~~~~~~  233 (234)
T TIGR02521       215 ALGDV-------AAAQRYGAQLQKLF  233 (234)
T ss_pred             HHhhH-------HHHHHHHHHHHhhC
Confidence            66653       44555555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=3.6e-12  Score=120.07  Aligned_cols=199  Identities=15%  Similarity=0.028  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE  129 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~  129 (284)
                      .+..+++..-.-.+.+-.|-..++.+|.+.|.+...+..|+.++.... +-++-.++|+++..+||.|..+++|||.+..
T Consensus       327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~-~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADEN-QSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhh-ccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            344455544444455678999999999999999999888888888777 4678889999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhh
Q 023284          130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIA  209 (284)
Q Consensus       130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~  209 (284)
                      -+++  ++++++-|++++++||.|.-+...++.++.+.+.+++.+..++.+++..|+-...+++-+.+|..-+.      
T Consensus       406 lL~q--~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq------  477 (606)
T KOG0547|consen  406 LLQQ--YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ------  477 (606)
T ss_pred             HHHH--HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh------
Confidence            9998  99999999999999999999999999999999999999999999999999999999999999876554      


Q ss_pred             hHHHHHHHHHHHHhcCCC------CccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          210 MRDSEVNFTIEAILGNPE------NESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       210 ~~~~el~~~~~~i~~~P~------nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                       ++.+++.|+++|++.|.      +..+.-+...++..-+   .+...+..-+.++++
T Consensus       478 -Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk---~d~~~a~~Ll~KA~e  531 (606)
T KOG0547|consen  478 -FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK---EDINQAENLLRKAIE  531 (606)
T ss_pred             -HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh---hhHHHHHHHHHHHHc
Confidence             47799999999999999      7777666555544422   222334445555543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.2e-11  Score=115.85  Aligned_cols=150  Identities=15%  Similarity=0.143  Sum_probs=133.8

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      .-++++.+|.+++++||+...||.--|-=.-.+.+  -..|+++|++|++++|++|.||+..|..+.-++...-||-++.
T Consensus       345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence            46899999999999999999999999988888887  8899999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHh
Q 023284          179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFE  258 (284)
Q Consensus       179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~  258 (284)
                      ++++.-|.|...|.-.|.+..++++.       ++|+.|+.+++...--+.++..+++-+.+.++    +++++..++.+
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~~~-------~eAiKCykrai~~~dte~~~l~~LakLye~l~----d~~eAa~~yek  491 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLNRL-------EEAIKCYKRAILLGDTEGSALVRLAKLYEELK----DLNEAAQYYEK  491 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhccH-------HHHHHHHHHHHhccccchHHHHHHHHHHHHHH----hHHHHHHHHHH
Confidence            99999999999999999999999884       88999999999887777788888888877653    45666666655


Q ss_pred             hhh
Q 023284          259 SFE  261 (284)
Q Consensus       259 ~~~  261 (284)
                      -++
T Consensus       492 ~v~  494 (559)
T KOG1155|consen  492 YVE  494 (559)
T ss_pred             HHH
Confidence            544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=6.4e-12  Score=117.76  Aligned_cols=151  Identities=14%  Similarity=0.163  Sum_probs=137.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF  142 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~  142 (284)
                      ..+++|+.+|.++|++||+...||--.|.=...+. +...|+.++++++.++|++|.||+.-|..+..++-  +.-+|-+
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK-Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M--h~YaLyY  420 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK-NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM--HFYALYY  420 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc-ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--hHHHHHH
Confidence            44689999999999999999999999999888877 57899999999999999999999999999999987  8899999


Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      +.+|+++-|.+...|.-.|.++.++++.++|+.||.+++...--+.+|+...+.+..+++..       +++..++.+-+
T Consensus       421 fqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~-------~eAa~~yek~v  493 (559)
T KOG1155|consen  421 FQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL-------NEAAQYYEKYV  493 (559)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH-------HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988999999999999998875       44555555555


Q ss_pred             h
Q 023284          223 L  223 (284)
Q Consensus       223 ~  223 (284)
                      +
T Consensus       494 ~  494 (559)
T KOG1155|consen  494 E  494 (559)
T ss_pred             H
Confidence            4

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=1e-11  Score=107.27  Aligned_cols=124  Identities=16%  Similarity=0.146  Sum_probs=115.0

Q ss_pred             CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhCCCCHHHHHHHH
Q 023284           65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA-EKLGTGAVNKELQFT  143 (284)
Q Consensus        65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll-~~l~~~~~~eel~~~  143 (284)
                      .++++..+.++|..+|++.++|...|.++..+| ++++++.++++++..+|++..++...+.++ ...|+....++.+.+
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g-~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l  133 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRN-DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI  133 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            368899999999999999999999999999999 699999999999999999999999999876 566653358999999


Q ss_pred             HHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          144 KKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       144 ~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      ++++++||+|..+++..+......|++++|+.+++++++.+|-+.+
T Consensus       134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            9999999999999999999999999999999999999999988664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.41  E-value=7.2e-11  Score=110.56  Aligned_cols=194  Identities=12%  Similarity=0.039  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH-----HHHHHH
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ-----LWHHRR  125 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~-----aW~hR~  125 (284)
                      ++...+.++...+..++|+.++.+++..+|.+..++..++.++...| +++++++.+++++..+|.+..     .+...+
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK-DWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34444555556666678888888888888888888888888877777 488888888888887776643     334455


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh-HHHHHHHHHHhcCCCC
Q 023284          126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN-SAWNQRYFVVTRSPLL  204 (284)
Q Consensus       126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~-sAW~~r~~ll~~l~~~  204 (284)
                      .++...|+  +++++..++++++.+|.+..++...+.++...|++++|++.+.++++.+|.+. .++...+.++...++ 
T Consensus       188 ~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-  264 (389)
T PRK11788        188 QQALARGD--LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-  264 (389)
T ss_pred             HHHHhCCC--HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-
Confidence            55666677  88888888888888888888888888888888888888888888888888764 455666666666666 


Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhh
Q 023284          205 GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFES  259 (284)
Q Consensus       205 ~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~  259 (284)
                            +++++..+.+++..+|+.+.. ..+..++.+.++    ...+...+.++
T Consensus       265 ------~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~----~~~A~~~l~~~  308 (389)
T PRK11788        265 ------EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEG----PEAAQALLREQ  308 (389)
T ss_pred             ------HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCC----HHHHHHHHHHH
Confidence                  367788888888888987554 455554444332    33444444444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.40  E-value=1.5e-11  Score=98.49  Aligned_cols=125  Identities=13%  Similarity=0.032  Sum_probs=115.5

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           70 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      +.+.+++..+|++..+-..++.++...| ++++++..+++++..+|.+..+|..++.++...|+  +.+++..++++++.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~   80 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQG-RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--YEEAIDAYALAAAL   80 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence            4678899999999999999999999888 59999999999999999999999999999999999  99999999999999


Q ss_pred             CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284          150 DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       150 dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l  197 (284)
                      +|.+...|++++.++...|++++|+..++++++.+|.+...+-.+..+
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            999999999999999999999999999999999999998876555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.39  E-value=5.3e-11  Score=119.93  Aligned_cols=155  Identities=8%  Similarity=-0.043  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284           67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM  146 (284)
Q Consensus        67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a  146 (284)
                      ++|.-......-.|.+..+....+.+..++|+ +++++..++.+++..|++.+|+.+++.+|.+.++  +++++..++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~-~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--~eeA~~~~~~~  146 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHR-SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--IEAGRAEIELY  146 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence            44444444556689999999999999999994 9999999999999999999999999999999999  99999999999


Q ss_pred             HHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284          147 LSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP  226 (284)
Q Consensus       147 L~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P  226 (284)
                      +..+|.|..+-+.++.++.++|++++|+++|++++..+|.+..+|..++.+|+..|+.       +++...|.++|...-
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~-------~~A~~~~~~a~~~~~  219 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL-------WRARDVLQAGLDAIG  219 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999985       667788888887655


Q ss_pred             CCccH
Q 023284          227 ENESP  231 (284)
Q Consensus       227 ~nesa  231 (284)
                      .-.-.
T Consensus       220 ~~~~~  224 (694)
T PRK15179        220 DGARK  224 (694)
T ss_pred             cchHH
Confidence            54444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.37  E-value=3e-11  Score=121.70  Aligned_cols=144  Identities=8%  Similarity=-0.052  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284           48 FSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV  127 (284)
Q Consensus        48 ~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l  127 (284)
                      ..+++-....+....++.++|+..++.++++.|++..|+.++..+|..+++ +++++..+++++..+|+++.+-++++.+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            366777778888889999999999999999999999999999999999995 9999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      +.++|+  +++++++|++++..+|.+..+|..++.++...|+.++|...|.++|+..-.-.-+++.+
T Consensus       164 l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (694)
T PRK15179        164 WDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR  228 (694)
T ss_pred             HHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence            999999  99999999999999999999999999999999999999999999999987766666555

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.37  E-value=1.1e-10  Score=102.39  Aligned_cols=170  Identities=8%  Similarity=-0.055  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH---H
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY---TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ---L  120 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~---~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~---a  120 (284)
                      ...+++...+..+...+..++|+..+++++..+|.+.   .+|+.++.++...| ++++++..+++++..+|++..   +
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG-DYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCchHHH
Confidence            3345565566666666667899999999999999876   68899999999999 699999999999999999887   7


Q ss_pred             HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCChhHH-----------------hHHHHHHHHccCcHHHHH
Q 023284          121 WHHRRWVAEKL--------GTGAVNKELQFTKKMLSLDAKNYHAW-----------------SYRQWVLQALGGWEDELD  175 (284)
Q Consensus       121 W~hR~~ll~~l--------~~~~~~eel~~~~~aL~~dpkN~~AW-----------------~~r~~vl~~l~~~~eeL~  175 (284)
                      |+.+|.+....        |.  +++++..+++++..+|.+..++                 ...+.+....|++++|+.
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTA--AREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHH--HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            99999998775        45  8899999999999999998765                 233455667789999999


Q ss_pred             HHHHHHhccCCC---hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284          176 YCQMLLGEDIFN---NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP  226 (284)
Q Consensus       176 ~~~~~l~~dp~n---~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P  226 (284)
                      .+.+++...|++   ..||..++.+..+++.+       ++++.+++.+....|
T Consensus       188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~-------~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       188 RFETVVENYPDTPATEEALARLVEAYLKLGLK-------DLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Confidence            999999997764   58999999999999985       667777766655555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.35  E-value=4.5e-11  Score=103.21  Aligned_cols=124  Identities=12%  Similarity=0.005  Sum_probs=115.8

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH-HHccC--cHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL-QALGG--WEDELD  175 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl-~~l~~--~~eeL~  175 (284)
                      +.++.+..+.+++..+|++..+|...|.++...|+  +++++.+++++++++|+|..++...+.++ ...|.  .+++.+
T Consensus        54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            46889999999999999999999999999999999  99999999999999999999999999976 67777  499999


Q ss_pred             HHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccH
Q 023284          176 YCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESP  231 (284)
Q Consensus       176 ~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesa  231 (284)
                      .++++++.+|+|..+++..+.+....|++       ++++.++.++++.+|.+.+-
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~-------~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADY-------AQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCCCCccH
Confidence            99999999999999999999999999984       88999999999999987764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.34  E-value=8.9e-12  Score=112.47  Aligned_cols=189  Identities=14%  Similarity=0.200  Sum_probs=112.2

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHH--------------------------------H
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQI--------------------------------I   93 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~--------------------------------L   93 (284)
                      |+..+.|..++.+....+..++|+..+++++..++.+.........+                                .
T Consensus        41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~  120 (280)
T PF13429_consen   41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQLY  120 (280)
T ss_dssp             -----------------------------------------------------------------------------H-H
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            44445555555555555555666666666666665554444333333                                2


Q ss_pred             HHhhhCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284           94 ETLHTDLQDELAFVGRIAKSN--SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE  171 (284)
Q Consensus        94 ~~l~~~~~~eL~~~~~~l~~~--pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~  171 (284)
                      ...+ ++++....++++....  |.+...|..++.+..+.|+  .++++.++.++|+++|.|..++...+|++...|+.+
T Consensus       121 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~  197 (280)
T PF13429_consen  121 YRLG-DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD  197 (280)
T ss_dssp             HHTT--HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred             HHHh-HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence            2223 4777777888866544  6888999999999999998  999999999999999999999999999999899998


Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284          172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                      ++.+.+..+....|.|...|...+.+...+|+.       ++++.++.+++..+|+|......+..++...|+
T Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-------~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-------EEALEYLEKALKLNPDDPLWLLAYADALEQAGR  263 (280)
T ss_dssp             HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-------HHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-------ccccccccccccccccccccccccccccccccc
Confidence            888888888888899999999999999888874       789999999999999999988888888887654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.30  E-value=4.2e-11  Score=108.09  Aligned_cols=145  Identities=15%  Similarity=0.183  Sum_probs=119.5

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 023284           58 VYYSDERSSRSFQLTKEAICLN--PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA  135 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~ln--P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~  135 (284)
                      +....+..+++..+++.+....  |.+..+|..++.+....| +.+++++++++++..+|++..++..-+|++...|+  
T Consensus       119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~--  195 (280)
T PF13429_consen  119 LYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG-DPDKALRDYRKALELDPDDPDARNALAWLLIDMGD--  195 (280)
T ss_dssp             -HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH--
T ss_pred             HHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--
Confidence            3444566678888888877666  789999999999999999 58999999999999999999999999999988888  


Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCc
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLG  205 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~  205 (284)
                      ..++.+.+....+..|.|...|...++++..+|+.++|+.++.+++..+|.|.....+.+.++...|+.+
T Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~  265 (280)
T PF13429_consen  196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD  265 (280)
T ss_dssp             HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred             hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence            8888899999999999999999999999999999999999999999999999999999999999999863

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.30  E-value=8.8e-11  Score=93.94  Aligned_cols=124  Identities=13%  Similarity=0.019  Sum_probs=115.3

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284          106 FVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       106 ~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp  185 (284)
                      .+.+++..+|++..+-..++..+...|+  +++++..+.+++..+|.+..+|..++.++...+++++|+.++++++..+|
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGR--YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5688999999999999999999999998  99999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284          186 FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL  238 (284)
Q Consensus       186 ~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l  238 (284)
                      .+...+.+++.++...++.       ++++..++++++++|++...+.+.+.+
T Consensus        83 ~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEP-------ESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             CChHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhccccchHHHHHHHH
Confidence            9999999999999998874       788999999999999999977666544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.28  E-value=1e-09  Score=112.52  Aligned_cols=142  Identities=10%  Similarity=-0.006  Sum_probs=119.5

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH
Q 023284           57 AVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAV  136 (284)
Q Consensus        57 ~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~  136 (284)
                      ++..-.+..++|++.+.+++..+|....++...+.++...| ++++++.++++++..+|.+..++...+.++...|+  +
T Consensus        23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~--~   99 (765)
T PRK10049         23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ--Y   99 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--H
Confidence            34444566688888888888888888888888888888888 58888899999999999998888888888888888  8


Q ss_pred             HHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          137 NKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       137 ~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      ++++..++++++.+|.+.. |...+.++...|+.++|+..++++++.+|++..++..++.++...+
T Consensus       100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~  164 (765)
T PRK10049        100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR  164 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            8899999999999998888 8888888888888889999999999999999888888877765443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.28  E-value=6.3e-10  Score=114.08  Aligned_cols=173  Identities=10%  Similarity=-0.078  Sum_probs=148.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC--------------
Q 023284           56 RAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN--------------  117 (284)
Q Consensus        56 r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn--------------  117 (284)
                      ..++...+..++|+..+++++..+|.+    ..+......++...+ .+++++..++++...+|..              
T Consensus       279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g-~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~  357 (765)
T PRK10049        279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE-NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD  357 (765)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc-cHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence            445555677789999999999999877    345555566666777 5999999999999998743              


Q ss_pred             -hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          118 -YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       118 -~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                       ..+...++.++...|+  ++++++.+++++..+|.|..+|..++.++...|++++|++.++++++++|+|..++..++.
T Consensus       358 ~~~a~~~~a~~l~~~g~--~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~  435 (765)
T PRK10049        358 WLQGQSLLSQVAKYSND--LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW  435 (765)
T ss_pred             HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence             3466778888888898  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284          197 VVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL  238 (284)
Q Consensus       197 ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l  238 (284)
                      +...++++       +++...++++++..|+|+.+-.+.+..
T Consensus       436 ~al~~~~~-------~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        436 TALDLQEW-------RQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHhCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            98888874       778899999999999999987766654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=4.3e-11  Score=107.15  Aligned_cols=103  Identities=18%  Similarity=0.165  Sum_probs=97.6

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      +|++|+..++++|.++|+|+.-+..|..++.+||.  ++.|++.|+.+|.+||+...+|...|.++..+|++++|++.|.
T Consensus        96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk  173 (304)
T KOG0553|consen   96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK  173 (304)
T ss_pred             hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            69999999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChHHHHHHHHHHhcCCC
Q 023284          179 MLLGEDIFNNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       179 ~~l~~dp~n~sAW~~r~~ll~~l~~  203 (284)
                      ++|++||.|.+.|.++..+=.+++.
T Consensus       174 KaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  174 KALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             hhhccCCCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999888666643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=4.8e-10  Score=107.63  Aligned_cols=188  Identities=11%  Similarity=0.039  Sum_probs=139.4

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN  137 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~  137 (284)
                      ++.+|. -.+|.-+++.+++.+|+|..||...|.+--..+. -..++..+.++++++|+|-.|.--.+..+..-|.  -.
T Consensus       295 lm~nG~-L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~-E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~--q~  370 (579)
T KOG1125|consen  295 LMKNGD-LSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN-EQNAISALRRCLELDPTNLEALMALAVSYTNEGL--QN  370 (579)
T ss_pred             HHhcCC-chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc-hHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh--HH
Confidence            346666 4678889999999999999999999998877774 5688899999999999999998666555444333  33


Q ss_pred             HHHHHHHHHHH-----------------------------------------hCc--CChhHHhHHHHHHHHccCcHHHH
Q 023284          138 KELQFTKKMLS-----------------------------------------LDA--KNYHAWSYRQWVLQALGGWEDEL  174 (284)
Q Consensus       138 eel~~~~~aL~-----------------------------------------~dp--kN~~AW~~r~~vl~~l~~~~eeL  174 (284)
                      +|+.+++++|.                                         .+|  .++..-.-.|.++.-.+.|+.++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            44444444444                                         444  44444445555555556789999


Q ss_pred             HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHH
Q 023284          175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLL  254 (284)
Q Consensus       175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~  254 (284)
                      +|++.+|..+|.|++.||-.|..|.+-.+.       .+||..|.+++++.|+...+|+.++.-.-..    +.|-+++.
T Consensus       451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-------~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl----G~ykEA~~  519 (579)
T KOG1125|consen  451 DCFEAALQVKPNDYLLWNRLGATLANGNRS-------EEAISAYNRALQLQPGYVRVRYNLGISCMNL----GAYKEAVK  519 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHhhHHhcCCccc-------HHHHHHHHHHHhcCCCeeeeehhhhhhhhhh----hhHHHHHH
Confidence            999999999999999999999999887774       7899999999999999999997765433332    23444444


Q ss_pred             HHHhhh
Q 023284          255 SVFESF  260 (284)
Q Consensus       255 ~~~~~~  260 (284)
                      =+.++|
T Consensus       520 hlL~AL  525 (579)
T KOG1125|consen  520 HLLEAL  525 (579)
T ss_pred             HHHHHH
Confidence            444443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=5.3e-10  Score=107.08  Aligned_cols=223  Identities=15%  Similarity=0.100  Sum_probs=156.1

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284           43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH  122 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~  122 (284)
                      .++|.|..||-+|+..+.-.+-.+.|+.++.+|-++-|....-..|.|.=...++ .++-+-.|+..++.+.|.++-+-+
T Consensus       340 ~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~-n~kLAe~Ff~~A~ai~P~Dplv~~  418 (611)
T KOG1173|consen  340 TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN-NLKLAEKFFKQALAIAPSDPLVLH  418 (611)
T ss_pred             hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCcchhhh
Confidence            3555555555555555554444455555555555555555555555554444444 467777888888888888888888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHh----CcC---ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSL----DAK---NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY  195 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~----dpk---N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~  195 (284)
                      .-|.+..+.+.  +.+|+..+..++..    .++   =...|++.|-+.++++++++|+.+++++|.+.|.|.++..-.|
T Consensus       419 Elgvvay~~~~--y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig  496 (611)
T KOG1173|consen  419 ELGVVAYTYEE--YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG  496 (611)
T ss_pred             hhhheeehHhh--hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence            88888887776  89999999988831    221   2245899999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCCh-hhHHHHHhhhhccccccccccCCC
Q 023284          196 FVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDP-RMLLSVFESFEYQKQLCFCSEHTF  274 (284)
Q Consensus       196 ~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  274 (284)
                      ++...+|..       +.|++++.++|.++|+|..+=..++..++..+..-+... .-+-|....--+++++.-|++...
T Consensus       497 ~iy~llgnl-------d~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  569 (611)
T KOG1173|consen  497 YIYHLLGNL-------DKAIDHFHKALALKPDNIFISELLKLAIEDSECKSGVDSKDYITCYNDNMYPKKSLLNISRRSL  569 (611)
T ss_pred             HHHHHhcCh-------HHHHHHHHHHHhcCCccHHHHHHHHHHHHhhhhhcccccccccchhhhhHHHhhhchhhccCCC
Confidence            998888874       789999999999999998766666666655332222211 122233333445555666665544


Q ss_pred             C
Q 023284          275 R  275 (284)
Q Consensus       275 ~  275 (284)
                      |
T Consensus       570 ~  570 (611)
T KOG1173|consen  570 R  570 (611)
T ss_pred             C
Confidence            3

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.22  E-value=1.2e-09  Score=111.97  Aligned_cols=194  Identities=11%  Similarity=-0.027  Sum_probs=150.1

Q ss_pred             cceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284           39 VVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY  118 (284)
Q Consensus        39 ~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~  118 (284)
                      +|.....|.+++.-.....+..+.+.+..|++.+.++++.+|.+..+.+--..++...| ..++++..+++++...|.++
T Consensus        24 ~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G-~~~~A~~~~eka~~p~n~~~  102 (822)
T PRK14574         24 ISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAG-RDQEVIDVYERYQSSMNISS  102 (822)
T ss_pred             HcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcC-CcHHHHHHHHHhccCCCCCH
Confidence            35667788877765555555566777789999999999999999644444444555667 58899999999994444444


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      .+-.-.+.++...|+  +++|++.++++++++|+|..++.....+....+..++|++.+.+++..+|.+... ..+..+.
T Consensus       103 ~~llalA~ly~~~gd--yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        103 RGLASAARAYRNEKR--WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence            444333668888898  9999999999999999999999988788888999999999999999999997665 4455555


Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          199 TRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       199 ~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      ...++.       .++++.+++++..+|+++.+..-+...+...+
T Consensus       180 ~~~~~~-------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        180 RATDRN-------YDALQASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             HhcchH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            444432       35899999999999999998755555555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.20  E-value=2.3e-09  Score=99.31  Aligned_cols=203  Identities=11%  Similarity=0.026  Sum_probs=148.4

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      .|+++.++.....+....+..+++...+.++...+|.+   .+....++.++...| +++++++++++++..+|++..++
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~   80 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLAL   80 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHH
Confidence            58888888888877777777777788888888777755   556777777777777 68999999999999999999888


Q ss_pred             HHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          122 HHRRWVAEKLGT--GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       122 ~hR~~ll~~l~~--~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      .. +..+..+|.  .........+......+|....+....+.++...|++++|+..++++++++|.+..+++..+.++.
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~  159 (355)
T cd05804          81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE  159 (355)
T ss_pred             HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            76 555555443  113334444444446777777888888889999999999999999999999999888888898888


Q ss_pred             cCCCCchhhhhHHHHHHHHHHHHhcCCCCcc----HHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284          200 RSPLLGGLIAMRDSEVNFTIEAILGNPENES----PWRYLRGLYKDDTESWINDPRMLLSVFESF  260 (284)
Q Consensus       200 ~l~~~~~~~~~~~~el~~~~~~i~~~P~nes----aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  260 (284)
                      ..++.       +++++++.+++...|.+..    .|..+..++...+    +..+++..+.+.+
T Consensus       160 ~~g~~-------~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G----~~~~A~~~~~~~~  213 (355)
T cd05804         160 MQGRF-------KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG----DYEAALAIYDTHI  213 (355)
T ss_pred             HcCCH-------HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC----CHHHHHHHHHHHh
Confidence            88874       7788888899888876443    2333444443332    2445555555544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.18  E-value=2.5e-09  Score=93.67  Aligned_cols=163  Identities=9%  Similarity=-0.026  Sum_probs=132.7

Q ss_pred             hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284           78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY  154 (284)
Q Consensus        78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~  154 (284)
                      .++....+++.++..+...| ++++++..+++++..+|.+.   .+|.+.+.++...|+  +++++..++++++.+|++.
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSG-DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--YAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCC
Confidence            34567789999999999988 59999999999999999986   688999999999999  9999999999999999999


Q ss_pred             h---HHhHHHHHHHHc--------cCcHHHHHHHHHHHhccCCChHHHHHH-----------------HHHHhcCCCCch
Q 023284          155 H---AWSYRQWVLQAL--------GGWEDELDYCQMLLGEDIFNNSAWNQR-----------------YFVVTRSPLLGG  206 (284)
Q Consensus       155 ~---AW~~r~~vl~~l--------~~~~eeL~~~~~~l~~dp~n~sAW~~r-----------------~~ll~~l~~~~~  206 (284)
                      .   +|+.+|.+....        +.+++|++.+++++..+|.+..++.-.                 +.+....|+   
T Consensus       105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~---  181 (235)
T TIGR03302       105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA---  181 (235)
T ss_pred             chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---
Confidence            8   799999998776        678999999999999999998775322                 222222333   


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHccCCccCCCChhhHH
Q 023284          207 LIAMRDSEVNFTIEAILGNPENE---SPWRYLRGLYKDDTESWINDPRMLL  254 (284)
Q Consensus       207 ~~~~~~~el~~~~~~i~~~P~ne---saW~y~~~ll~~~~~~~~~~~~~~~  254 (284)
                          +++++..+.+++...|+++   .+|..++.++...+.    +.+++.
T Consensus       182 ----~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~----~~~A~~  224 (235)
T TIGR03302       182 ----YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL----KDLAQD  224 (235)
T ss_pred             ----hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC----HHHHHH
Confidence                4778999999999988764   588777766666543    444554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=3.1e-10  Score=105.34  Aligned_cols=196  Identities=12%  Similarity=0.052  Sum_probs=161.1

Q ss_pred             ccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 023284           14 ERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQII   93 (284)
Q Consensus        14 ~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L   93 (284)
                      ++.||..-.....++|+.+.....        |.--.+......++...+++++|...+-.++++++.+..+...||.++
T Consensus       142 ~~~~~~~anal~~~~~~~~s~s~~--------pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~  213 (486)
T KOG0550|consen  142 SKQAYKAANALPTLEKLAPSHSRE--------PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCL  213 (486)
T ss_pred             hhhhhHHhhhhhhhhcccccccCC--------chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccc
Confidence            445554444566666766643333        334456666667788889999999999999999999999999999999


Q ss_pred             HHhhhCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh----hHH
Q 023284           94 ETLHTDLQDELAFVGRIAKSNSKNY------------QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY----HAW  157 (284)
Q Consensus        94 ~~l~~~~~~eL~~~~~~l~~~pkn~------------~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~----~AW  157 (284)
                      .... +...++..++++|..+|...            .+|-.+|.-+.+-|.  +..+-++|..+|.+||.|.    +.+
T Consensus       214 yy~~-~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~--y~~A~E~Yteal~idP~n~~~naklY  290 (486)
T KOG0550|consen  214 YYND-NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN--YRKAYECYTEALNIDPSNKKTNAKLY  290 (486)
T ss_pred             cccc-chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc--hhHHHHHHHHhhcCCccccchhHHHH
Confidence            9888 58899999999999988776            457777777777788  9999999999999999865    678


Q ss_pred             hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284          158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE  227 (284)
Q Consensus       158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~  227 (284)
                      .+|+.+..++|+..+++..++.++.+||...-|+.-|+.+..-++.       ++++++.++++++..-+
T Consensus       291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~-------~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK-------WEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccc
Confidence            8999999999999999999999999999999999999988776665       47778888888765554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.18  E-value=1.9e-10  Score=103.01  Aligned_cols=113  Identities=18%  Similarity=0.111  Sum_probs=105.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG  134 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~  134 (284)
                      -+.-..+.+++++|+..|++||+++|.++..+-.|..++.+|| .++.|++-|+.+|.+||....+|...|.++..+|+ 
T Consensus        87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk-  164 (304)
T KOG0553|consen   87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK-  164 (304)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc-
Confidence            3555556777899999999999999999999999999999999 59999999999999999999999999999999999 


Q ss_pred             CHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284          135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW  170 (284)
Q Consensus       135 ~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~  170 (284)
                       ++++++.|.++|++||.|-..|.+..++-.+++.-
T Consensus       165 -~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  165 -YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             -HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence             99999999999999999999999999998888743

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.15  E-value=4.8e-09  Score=104.98  Aligned_cols=139  Identities=20%  Similarity=0.273  Sum_probs=124.0

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284           43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH  122 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~  122 (284)
                      ++.|+-...++.--.+... +..++|..++.+||+.+|.++.+|+..|.|.+.+| +.++++.|.-.|..++|+++.-|.
T Consensus       134 ~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~  211 (895)
T KOG2076|consen  134 KLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWK  211 (895)
T ss_pred             ccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHH
Confidence            3444444444333233333 55689999999999999999999999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp  185 (284)
                      +-+-+..++|.  +..|.-||.+||+.+|.|..--..|..+++++|....|++.+.+++..+|
T Consensus       212 ~ladls~~~~~--i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  212 RLADLSEQLGN--INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHhccc--HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999998  99999999999999999999999999999999999999999999999999

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.14  E-value=5.7e-09  Score=90.61  Aligned_cols=174  Identities=10%  Similarity=-0.013  Sum_probs=145.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK  130 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~  130 (284)
                      ++-.++.-+...+....|..-++++|+.+|+++.+|..|..+.+.+| ..+.+-+.|++++.++|++-.+.++-||.|=.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G-e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~  115 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLADESYRKALSLAPNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence            34444444556667789999999999999999999999999999999 58899999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH--hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhh
Q 023284          131 LGTGAVNKELQFTKKMLS--LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLI  208 (284)
Q Consensus       131 l~~~~~~eel~~~~~aL~--~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~  208 (284)
                      .|+  ++++...+++++.  ..+.-...|-+.|+|-.+.|..+.+.+++.++|+.||++..+.--..-.+..-+.+.   
T Consensus       116 qg~--~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~---  190 (250)
T COG3063         116 QGR--PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA---  190 (250)
T ss_pred             CCC--hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch---
Confidence            998  9999999999997  356777899999999999999999999999999999999999888877777667653   


Q ss_pred             hhHHHHHHHHHHHHhc-CCCCccHHHH
Q 023284          209 AMRDSEVNFTIEAILG-NPENESPWRY  234 (284)
Q Consensus       209 ~~~~~el~~~~~~i~~-~P~nesaW~y  234 (284)
                          .+-.+++..... .++-+|.|.-
T Consensus       191 ----~Ar~~~~~~~~~~~~~A~sL~L~  213 (250)
T COG3063         191 ----PARLYLERYQQRGGAQAESLLLG  213 (250)
T ss_pred             ----HHHHHHHHHHhcccccHHHHHHH
Confidence                334444444433 3444567643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.13  E-value=1.2e-09  Score=102.52  Aligned_cols=97  Identities=12%  Similarity=0.043  Sum_probs=57.8

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      ++++++.+++++|..+|.+..+|.+|+.++..+|+  +++|+..++++++++|.+..+|+.+|.++..+|++++|+..++
T Consensus        17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~   94 (356)
T PLN03088         17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--FTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE   94 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            45566666666666666666666666666655555  6666666666666666666666666666666666666666666


Q ss_pred             HHHhccCCChHHHHHHHHH
Q 023284          179 MLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       179 ~~l~~dp~n~sAW~~r~~l  197 (284)
                      ++++++|+|..+....+.+
T Consensus        95 ~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         95 KGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHhCCCCHHHHHHHHHH
Confidence            6666666665555544444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.12  E-value=6.3e-09  Score=94.99  Aligned_cols=168  Identities=14%  Similarity=0.157  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK  145 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~  145 (284)
                      .+||..|..++..+|++|.+.+.|+.+...+|+ -..+|.-++++|+.-|..+.|-..||.++.+.|.  ++.+.+.+++
T Consensus        55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk-sk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge--le~A~~DF~~  131 (504)
T KOG0624|consen   55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK-SKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE--LEQAEADFDQ  131 (504)
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC-CccchhhHHHHHhcCccHHHHHHHhchhhhhccc--HHHHHHHHHH
Confidence            467777777777777777777777777777774 4566666777777777777777777777777776  7777777777


Q ss_pred             HHHhCcCCh-------------hHHhHHHHHHHHc--cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch----
Q 023284          146 MLSLDAKNY-------------HAWSYRQWVLQAL--GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG----  206 (284)
Q Consensus       146 aL~~dpkN~-------------~AW~~r~~vl~~l--~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~----  206 (284)
                      +|.-+|.|-             .-|.-+..+....  |+...++++++..|++-|=+.+...+|.-++-.-+....    
T Consensus       132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~D  211 (504)
T KOG0624|consen  132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHD  211 (504)
T ss_pred             HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHH
Confidence            777777442             3566666665554  356677777777777777777777666655443321100    


Q ss_pred             -----------------hhhh------HHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284          207 -----------------LIAM------RDSEVNFTIEAILGNPENESPWRYLR  236 (284)
Q Consensus       207 -----------------~~~~------~~~el~~~~~~i~~~P~nesaW~y~~  236 (284)
                                       ...+      .+..|.-+.+-|+++|++...+-+.+
T Consensus       212 lk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YK  264 (504)
T KOG0624|consen  212 LKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYK  264 (504)
T ss_pred             HHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHH
Confidence                             0000      25567778888999999988765544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.10  E-value=6e-09  Score=90.45  Aligned_cols=125  Identities=15%  Similarity=0.098  Sum_probs=114.8

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      ++..+..-++++|+.+|++|.+|.-|..+++.+|.  .+.+-+.|.++++++|+|-...++-||.|...|++++++..++
T Consensus        50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~  127 (250)
T COG3063          50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFE  127 (250)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHH
Confidence            68899999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHhc--cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284          179 MLLGE--DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       179 ~~l~~--dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW  232 (284)
                      +++..  .+.-...|-+.|.+-.+.|..       +.+-+++.++|+++|++..+-
T Consensus       128 ~Al~~P~Y~~~s~t~eN~G~Cal~~gq~-------~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         128 RALADPAYGEPSDTLENLGLCALKAGQF-------DQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             HHHhCCCCCCcchhhhhhHHHHhhcCCc-------hhHHHHHHHHHHhCcCCChHH
Confidence            99985  466778899999998888875       456778899999999998754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=3.1e-09  Score=101.42  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=123.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 023284           59 YYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNK  138 (284)
Q Consensus        59 ~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~e  138 (284)
                      +.+...-++++...+...-++|+-.+.-..+|......| ++.+|+..|+++|..+|++..++.+|+.++.+||.  +.+
T Consensus       334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g-dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~--~~~  410 (539)
T KOG0548|consen  334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG-DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE--YPE  410 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh--HHH
Confidence            333333467888888888889998888888888888888 79999999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          139 ELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       139 el~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      +|..+++++++||.+.-+|..+|.++..+.+|++++++|.++++.||++..+--..+-++..
T Consensus       411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998776555555553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=2.3e-08  Score=87.98  Aligned_cols=184  Identities=12%  Similarity=0.081  Sum_probs=152.7

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284           43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH  122 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~  122 (284)
                      .+-|+....+...--....-++..-|..++..+-...|+++-+=-.++..|+..| .+++|++.++.+|..||.|..+.-
T Consensus        46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~-~~~~A~e~y~~lL~ddpt~~v~~K  124 (289)
T KOG3060|consen   46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG-NYKEAIEYYESLLEDDPTDTVIRK  124 (289)
T ss_pred             ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-chhhHHHHHHHHhccCcchhHHHH
Confidence            3455555555432222223345578999999988888999999999999999999 599999999999999999999988


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      .|-.+++..|+  -.+++.-++.-|+.-+.+..||....-++-..+.|++|.-|+++++-+.|.|+-..--.+-++...|
T Consensus       125 RKlAilka~GK--~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  125 RKLAILKAQGK--NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG  202 (289)
T ss_pred             HHHHHHHHcCC--cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            77888888998  6799999999999999999999999999999999999999999999999999876655566766665


Q ss_pred             CCchhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284          203 LLGGLIAMRDSEVNFTIEAILGNPENESPWR  233 (284)
Q Consensus       203 ~~~~~~~~~~~el~~~~~~i~~~P~nesaW~  233 (284)
                      ..    .-++-+..++.++++++|.|--+|+
T Consensus       203 g~----eN~~~arkyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  203 GA----ENLELARKYYERALKLNPKNLRALF  229 (289)
T ss_pred             hH----HHHHHHHHHHHHHHHhChHhHHHHH
Confidence            43    1246678899999999998877774

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=5.4e-09  Score=99.75  Aligned_cols=156  Identities=15%  Similarity=0.138  Sum_probs=134.9

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN  137 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~  137 (284)
                      .+.+.+..+.++..+.++|...-.        ..++..+. ..++++.-.+...-++|+-...--.+|.-..+.|+  +.
T Consensus       307 a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk-~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd--y~  375 (539)
T KOG0548|consen  307 AYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLK-EAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD--YP  375 (539)
T ss_pred             hhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHH-HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC--HH
Confidence            333445556677777775543222        56777777 58899999999999999998888889999999999  99


Q ss_pred             HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 023284          138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNF  217 (284)
Q Consensus       138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~  217 (284)
                      +|+..|+++|.++|.|.-++++|+.++-+++.+..+|..+++.|++||.+.-+|..+|.++..+.++       +++++.
T Consensus       376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y-------dkAlea  448 (539)
T KOG0548|consen  376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY-------DKALEA  448 (539)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999888774       788999


Q ss_pred             HHHHHhcCCCCccH
Q 023284          218 TIEAILGNPENESP  231 (284)
Q Consensus       218 ~~~~i~~~P~nesa  231 (284)
                      |.++++.+|++..+
T Consensus       449 y~eale~dp~~~e~  462 (539)
T KOG0548|consen  449 YQEALELDPSNAEA  462 (539)
T ss_pred             HHHHHhcCchhHHH
Confidence            99999999999863

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.04  E-value=5.6e-09  Score=97.97  Aligned_cols=105  Identities=15%  Similarity=0.101  Sum_probs=98.0

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284           61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL  140 (284)
Q Consensus        61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel  140 (284)
                      ..+..++|+++++++|.++|.+..+|..|+.++..+| ++++++..+++++.++|.+..+|+.+|.++..+|+  +++|+
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~--~~eA~   90 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLG-NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE--YQTAK   90 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--HHHHH
Confidence            4456689999999999999999999999999999999 69999999999999999999999999999999999  99999


Q ss_pred             HHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284          141 QFTKKMLSLDAKNYHAWSYRQWVLQALG  168 (284)
Q Consensus       141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~  168 (284)
                      ..++++++++|.|..+....+.+...+.
T Consensus        91 ~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         91 AALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999888877776663

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.02  E-value=2.1e-08  Score=92.86  Aligned_cols=168  Identities=10%  Similarity=0.060  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh---CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT---DLQDELAFVGRIAKSNSKNYQLWHHRR  125 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~---~~~~eL~~~~~~l~~~pkn~~aW~hR~  125 (284)
                      .+.......+....+..++|++++++++..+|.+..++.. +..+..++.   ......+.+......+|....+....+
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  121 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA  121 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence            3444455555666677799999999999999999999886 444444441   233344444444467777778888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh----HHHHHHHHHHhcC
Q 023284          126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN----SAWNQRYFVVTRS  201 (284)
Q Consensus       126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~----sAW~~r~~ll~~l  201 (284)
                      .++...|+  +++++..++++++++|++..++...+.++...|++++++.++++++...|.+.    ..|.+.+.++...
T Consensus       122 ~~~~~~G~--~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~  199 (355)
T cd05804         122 FGLEEAGQ--YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER  199 (355)
T ss_pred             HHHHHcCC--HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence            99999999  99999999999999999999999999999999999999999999999987543    3466778888778


Q ss_pred             CCCchhhhhHHHHHHHHHHHHhcCC
Q 023284          202 PLLGGLIAMRDSEVNFTIEAILGNP  226 (284)
Q Consensus       202 ~~~~~~~~~~~~el~~~~~~i~~~P  226 (284)
                      |++       ++++..+++++...|
T Consensus       200 G~~-------~~A~~~~~~~~~~~~  217 (355)
T cd05804         200 GDY-------EAALAIYDTHIAPSA  217 (355)
T ss_pred             CCH-------HHHHHHHHHHhcccc
Confidence            874       778888988887776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.00  E-value=7.1e-09  Score=104.53  Aligned_cols=200  Identities=11%  Similarity=0.052  Sum_probs=148.7

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-------------------------
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL-------------------------   96 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l-------------------------   96 (284)
                      +...|.|.+++-..+..........+|...+..++..+..+..+|..-|.+....                         
T Consensus       523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys  602 (1018)
T KOG2002|consen  523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS  602 (1018)
T ss_pred             HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence            4466777777666654433344446788888888888888888888888433221                         


Q ss_pred             ----h------------------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284           97 ----H------------------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY  154 (284)
Q Consensus        97 ----~------------------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~  154 (284)
                          |                  ..+++|+.+|.++|..+|||..|=+.-|.+|..-|+  +.+|++.+.++.+--.++.
T Consensus       603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~--~~~A~dIFsqVrEa~~~~~  680 (1018)
T KOG2002|consen  603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR--FSEARDIFSQVREATSDFE  680 (1018)
T ss_pred             HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC--chHHHHHHHHHHHHHhhCC
Confidence                1                  125678888888888888888888888888888877  8888888888887777788


Q ss_pred             hHHhHHHHHHHHccCcHHHHHHHHHHHhccC--CChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284          155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDI--FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp--~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW  232 (284)
                      .+|.+.+.|+...|.|-.|++.|+..++..-  .+....++.+-++..-+.       +.++.+....++.+.|.|.++-
T Consensus       681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~-------~~eak~~ll~a~~~~p~~~~v~  753 (1018)
T KOG2002|consen  681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK-------LQEAKEALLKARHLAPSNTSVK  753 (1018)
T ss_pred             ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhCCccchHH
Confidence            8888888888888888888888888887653  344667777776665554       5788999999999999999988


Q ss_pred             HHHHHHHccCCccCCCCh
Q 023284          233 RYLRGLYKDDTESWINDP  250 (284)
Q Consensus       233 ~y~~~ll~~~~~~~~~~~  250 (284)
                      +.+..++.+..+++-..|
T Consensus       754 FN~a~v~kkla~s~lr~~  771 (1018)
T KOG2002|consen  754 FNLALVLKKLAESILRLE  771 (1018)
T ss_pred             hHHHHHHHHHHHHHHhcc
Confidence            888888887666554433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.98  E-value=1.9e-08  Score=100.83  Aligned_cols=125  Identities=15%  Similarity=0.163  Sum_probs=116.0

Q ss_pred             HHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284           92 IIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE  171 (284)
Q Consensus        92 ~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~  171 (284)
                      .+...| ++++|.+.+..+|..+|+++.+|..-|.|.++.|+  .++++.+.-.|-.++|+++.-|.+.+-...++|.+.
T Consensus       148 ~lfarg-~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd--~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  148 NLFARG-DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD--IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN  224 (895)
T ss_pred             HHHHhC-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence            344456 69999999999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284          172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP  226 (284)
Q Consensus       172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P  226 (284)
                      .|.-||.++|..+|.|.-.-..|..++.++|..       .+|++.+.+++...|
T Consensus       225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-------~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDL-------KRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-------HHHHHHHHHHHhhCC
Confidence            999999999999999988878888899988874       778889999999988

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.98  E-value=4.2e-08  Score=89.68  Aligned_cols=158  Identities=18%  Similarity=0.120  Sum_probs=129.4

Q ss_pred             CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHh
Q 023284           79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWS  158 (284)
Q Consensus        79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~  158 (284)
                      +|.+.+-..-.|.-+..-|. +.++|.-|..++..||+||++.+.|+.++..+|+  -.-++..++++|++-|..+-|=.
T Consensus        34 ~~advekhlElGk~lla~~Q-~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk--sk~al~Dl~rVlelKpDF~~ARi  110 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK--SKAALQDLSRVLELKPDFMAARI  110 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC--CccchhhHHHHHhcCccHHHHHH
Confidence            45556666666777777774 8899999999999999999999999999999998  77899999999999999999999


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHhccCCChHH-------------HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC
Q 023284          159 YRQWVLQALGGWEDELDYCQMLLGEDIFNNSA-------------WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN  225 (284)
Q Consensus       159 ~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA-------------W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~  225 (284)
                      .||.++.+.|.++.|..-++++|..+|+|.+.             |..+..++.-.+.-+     +..++++++++|++.
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD-----~~~ai~~i~~llEi~  185 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD-----CQNAIEMITHLLEIQ  185 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc-----hhhHHHHHHHHHhcC
Confidence            99999999999999999999999999987754             444444444332211     356788999999999


Q ss_pred             CCCccHHHHHHHHHccCCc
Q 023284          226 PENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       226 P~nesaW~y~~~ll~~~~~  244 (284)
                      |=+.+...++.-++...++
T Consensus       186 ~Wda~l~~~Rakc~i~~~e  204 (504)
T KOG0624|consen  186 PWDASLRQARAKCYIAEGE  204 (504)
T ss_pred             cchhHHHHHHHHHHHhcCc
Confidence            9999988887766665444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.94  E-value=3.7e-08  Score=97.43  Aligned_cols=138  Identities=16%  Similarity=0.147  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE  129 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~  129 (284)
                      ..|.....+....+..++|.-|..++=++.|-...+|+-+|.++...| ..+++..+|..++.+||.++.+-.-.+.++.
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~-~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG-QLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH-hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            455566666667777789999999999999999999999999999999 4899999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      ..|.....+.-.+...++++||.|..||++.|-++++.|+.+.|-+||+.++++++++.
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            99986666666799999999999999999999999999999999999999999998875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.93  E-value=4.5e-09  Score=74.50  Aligned_cols=67  Identities=19%  Similarity=0.310  Sum_probs=45.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-CcHHHHHHHHHHHhccC
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDELDYCQMLLGEDI  185 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-~~~eeL~~~~~~l~~dp  185 (284)
                      +..+|..+|.++...|+  +++++.++++++++||.+..+|+.+|.++..+| ++++|+++++++|+++|
T Consensus         2 ~a~~~~~~g~~~~~~~~--~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGD--YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45566666666666666  666666666666666666666666666666666 56666666666666666

...

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.89  E-value=1e-07  Score=94.30  Aligned_cols=212  Identities=14%  Similarity=0.196  Sum_probs=156.7

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL-NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l-nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      ++.|.++.+..|...-+.-...-+.|++...++|.+ +.++..+|+....++..-+ ++.+++..++.++...|+|+..-
T Consensus       472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k-r~~~Al~vvd~al~E~~~N~~l~  550 (799)
T KOG4162|consen  472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK-RLKEALDVVDAALEEFGDNHVLM  550 (799)
T ss_pred             hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHhhhhhhhc
Confidence            345555555554443333334446789999999999 4467788988888888877 48899999999999999877653


Q ss_pred             HHHHHHHHHhCC--------------------------------------------------------------------
Q 023284          122 HHRRWVAEKLGT--------------------------------------------------------------------  133 (284)
Q Consensus       122 ~hR~~ll~~l~~--------------------------------------------------------------------  133 (284)
                      .-|.-|-..+++                                                                    
T Consensus       551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se  630 (799)
T KOG4162|consen  551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE  630 (799)
T ss_pred             hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence            332211111100                                                                    


Q ss_pred             ---------------------------------CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284          134 ---------------------------------GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQML  180 (284)
Q Consensus       134 ---------------------------------~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~  180 (284)
                                                       ...+++..|+..+-.++|-....|+-+|.++...|.+++|.++|..+
T Consensus       631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A  710 (799)
T KOG4162|consen  631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA  710 (799)
T ss_pred             cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence                                             01356667888899999999999999999999999999999999999


Q ss_pred             HhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhh-
Q 023284          181 LGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFES-  259 (284)
Q Consensus       181 l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~-  259 (284)
                      +.+||++.-...-.+-++...|.-.     +.+.-.+...+++++|.|..+|+|++.++.+.|.    ...+.-||-.+ 
T Consensus       711 l~ldP~hv~s~~Ala~~lle~G~~~-----la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd----~~~Aaecf~aa~  781 (799)
T KOG4162|consen  711 LALDPDHVPSMTALAELLLELGSPR-----LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD----SKQAAECFQAAL  781 (799)
T ss_pred             HhcCCCCcHHHHHHHHHHHHhCCcc-----hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc----hHHHHHHHHHHH
Confidence            9999999999999999999988532     1212236678999999999999999999998753    34566677666 


Q ss_pred             -hhccc
Q 023284          260 -FEYQK  264 (284)
Q Consensus       260 -~~~~~  264 (284)
                       |+.++
T Consensus       782 qLe~S~  787 (799)
T KOG4162|consen  782 QLEESN  787 (799)
T ss_pred             hhccCC
Confidence             45544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=8.5e-08  Score=92.21  Aligned_cols=174  Identities=13%  Similarity=0.056  Sum_probs=103.2

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284           61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL  140 (284)
Q Consensus        61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel  140 (284)
                      ..+.+.+|-.++.++-.++|....+|..-|..+..-+ .-+.++.++..|.+.-|++...-.+-|.=...++.  +.-+-
T Consensus       324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~-EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n--~kLAe  400 (611)
T KOG1173|consen  324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG-EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN--LKLAE  400 (611)
T ss_pred             HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc-hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc--HHHHH
Confidence            3344444555555555555555555554444444433 24445555555555555554444444444444444  55555


Q ss_pred             HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc--CCCh-----HHHHHHHHHHhcCCCCchhhhhHHH
Q 023284          141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED--IFNN-----SAWNQRYFVVTRSPLLGGLIAMRDS  213 (284)
Q Consensus       141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d--p~n~-----sAW~~r~~ll~~l~~~~~~~~~~~~  213 (284)
                      .|+..|+.+.|.+.-.-+..|-+..+.+.|.+|+.++..+++.-  ..+.     ..|++.|.+..++++       +++
T Consensus       401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-------~~e  473 (611)
T KOG1173|consen  401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-------YEE  473 (611)
T ss_pred             HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-------HHH
Confidence            66666666666666666666666666666677777777666321  1122     236677777777666       488


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284          214 EVNFTIEAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       214 el~~~~~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                      +|.+++++|.+.|.+.++..-++.+....++
T Consensus       474 AI~~~q~aL~l~~k~~~~~asig~iy~llgn  504 (611)
T KOG1173|consen  474 AIDYYQKALLLSPKDASTHASIGYIYHLLGN  504 (611)
T ss_pred             HHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence            9999999999999999877666655554443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.86  E-value=6.3e-08  Score=80.03  Aligned_cols=107  Identities=3%  Similarity=-0.082  Sum_probs=87.4

Q ss_pred             HHHhC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC
Q 023284           75 AICLN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN  153 (284)
Q Consensus        75 ~L~ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN  153 (284)
                      +..+. ++.-+.-+-.+-.+...| ++++|..+|+.+...+|.++.-|.+.|.+.+.+|+  +.+|+++|.+++.++|+|
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G-~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~--~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVK-EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH--WGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCC
Confidence            33455 666666777777777777 58888888888888888888888888888888888  888888888888888888


Q ss_pred             hhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284          154 YHAWSYRQWVLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       154 ~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      +.+..|.|-++-.+|+.+.|.+++..+|..-
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            8888888888888888888888888888765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.83  E-value=4e-08  Score=82.53  Aligned_cols=111  Identities=17%  Similarity=0.129  Sum_probs=68.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          116 KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       116 kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      +...+++.++.++...|+  +++++.+++++++++|+.   ..+|.+.+.++..+|++++|+.++.+++..+|.+..++.
T Consensus        33 ~~a~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGE--YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             hhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            444445555555555555  666666666666554432   345666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCCC-------chhhhhHHHHHHHHHHHHhcCCCC
Q 023284          193 QRYFVVTRSPLL-------GGLIAMRDSEVNFTIEAILGNPEN  228 (284)
Q Consensus       193 ~r~~ll~~l~~~-------~~~~~~~~~el~~~~~~i~~~P~n  228 (284)
                      .++.++..++..       ..+...++++++++.+++..+|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            666665555432       112233677899999999999998

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.83  E-value=2.4e-08  Score=70.72  Aligned_cols=68  Identities=19%  Similarity=0.257  Sum_probs=60.2

Q ss_pred             CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCc
Q 023284           81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG-TGAVNKELQFTKKMLSLDA  151 (284)
Q Consensus        81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~-~~~~~eel~~~~~aL~~dp  151 (284)
                      +++.+|..+|.++...+ ++++++.++++++..+|++..+|..+|.++..+| +  +.+++.++++++++||
T Consensus         1 e~a~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~--~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQG-DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD--YEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHcCc
Confidence            35678899999999888 5899999999999999999999999999999988 7  8899999999999988

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.83  E-value=9.6e-08  Score=68.39  Aligned_cols=98  Identities=20%  Similarity=0.213  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284           85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL  164 (284)
Q Consensus        85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl  164 (284)
                      +|+.++.++...| ++++++..+++++...|++..+|...+.++...++  +++++.++.+++...|.+..+|...+.++
T Consensus         2 ~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLG-DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--YEEALEDYEKALELDPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHh-cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            4556666666666 46777777777777777777777777777777766  77777777777777777777777777777


Q ss_pred             HHccCcHHHHHHHHHHHhccC
Q 023284          165 QALGGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       165 ~~l~~~~eeL~~~~~~l~~dp  185 (284)
                      ...++++++...+.++++.+|
T Consensus        79 ~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          79 YKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHhHHHHHHHHHHHHccCC
Confidence            777777777777777777665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.82  E-value=1.2e-07  Score=79.60  Aligned_cols=105  Identities=12%  Similarity=0.097  Sum_probs=85.1

Q ss_pred             CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284           81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus        81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      ....+++.++.++...| ++++++.++++++...|+.   ..+|.+.+.++..+|+  +++++.++.++++.+|++..++
T Consensus        33 ~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         33 KEAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--HDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHH
Confidence            44556677777777777 5888888888888877653   4678888888888888  8888888888888888888888


Q ss_pred             hHHHHHHHHccC--------------cHHHHHHHHHHHhccCCCh
Q 023284          158 SYRQWVLQALGG--------------WEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       158 ~~r~~vl~~l~~--------------~~eeL~~~~~~l~~dp~n~  188 (284)
                      ..++.++..++.              ++++++++.+++..+|.|.
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            888888887775              5788899999999999984

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.82  E-value=2.4e-08  Score=100.93  Aligned_cols=172  Identities=9%  Similarity=0.067  Sum_probs=116.6

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh--
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY--  118 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~--  118 (284)
                      ++.+.|.+..+|.+.|.++..--.--+|..+|++|..++|.++++|-.-....-... +++.+...+-.+.++.|+..  
T Consensus       484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~-~we~a~~I~l~~~qka~a~~~k  562 (1238)
T KOG1127|consen  484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES-TWEEAFEICLRAAQKAPAFACK  562 (1238)
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc-cHHHHHHHHHHHhhhchHHHHH
Confidence            344555555555555555543332245666666666666666666665555555544 45555555555555555433  


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      ..|.+||...-+-++  +..++.-+..++..||+++.+|...|-++..-|++..|+..++++..++|.+--+-+....+.
T Consensus       563 ~nW~~rG~yyLea~n--~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e  640 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHN--LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME  640 (1238)
T ss_pred             hhhhhccccccCccc--hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence            345555544444444  788999999999999999999999999999999999999999999999999877777767777


Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHH
Q 023284          199 TRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       199 ~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      ..+|.+       +++++.....|
T Consensus       641 cd~GkY-------keald~l~~ii  657 (1238)
T KOG1127|consen  641 CDNGKY-------KEALDALGLII  657 (1238)
T ss_pred             HHhhhH-------HHHHHHHHHHH
Confidence            677775       44454444444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=2.7e-07  Score=81.26  Aligned_cols=147  Identities=14%  Similarity=0.109  Sum_probs=129.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR  125 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~  125 (284)
                      |...-+....+..+...+..++|+++++.+|.-+|.|..+.-.|-.+++..|+.. ++++-+..-+...+.+..||..-.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-~aIk~ln~YL~~F~~D~EAW~eLa  161 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-EAIKELNEYLDKFMNDQEAWHELA  161 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4444555666777778888899999999999999999988886667888889765 899999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC---cHHHHHHHHHHHhccCCChHHHHHHH
Q 023284          126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG---WEDELDYCQMLLGEDIFNNSAWNQRY  195 (284)
Q Consensus       126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~---~~eeL~~~~~~l~~dp~n~sAW~~r~  195 (284)
                      .++...|.  +.+|.=|++.++-+.|-|+-.....+-++...|.   .+-+.++|.++++++|.|..+|+...
T Consensus       162 eiY~~~~~--f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~  232 (289)
T KOG3060|consen  162 EIYLSEGD--FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY  232 (289)
T ss_pred             HHHHhHhH--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence            99999998  9999999999999999999988888888887774   57889999999999999999998654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.79  E-value=1.1e-07  Score=79.34  Aligned_cols=125  Identities=17%  Similarity=0.069  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHhHHHHHHHHccCcHHHHHHH
Q 023284          103 ELAFVGRIAKSNSKN--YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWSYRQWVLQALGGWEDELDYC  177 (284)
Q Consensus       103 eL~~~~~~l~~~pkn--~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~~r~~vl~~l~~~~eeL~~~  177 (284)
                      ....+..++..+++.  ..+|+..+.++...|+  +++++..+.+++.+.|+.   ..+|.+.+.++...|++++|+.++
T Consensus        18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~--~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGE--YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             chhhhhHhccCCchhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            333444444444444  5556666777777777  777777777777776553   247777777777777788888888


Q ss_pred             HHHHhccCCChHHHHHHHHHHh-------cCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284          178 QMLLGEDIFNNSAWNQRYFVVT-------RSPLLGGLIAMRDSEVNFTIEAILGNPENE  229 (284)
Q Consensus       178 ~~~l~~dp~n~sAW~~r~~ll~-------~l~~~~~~~~~~~~el~~~~~~i~~~P~ne  229 (284)
                      .+++.++|.+..++.+++.++.       .++++......+++++..+.+++..+|.+.
T Consensus        96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            8888888877777777777777       344443333446778888999999999754

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.78  E-value=1.9e-07  Score=77.25  Aligned_cols=104  Identities=9%  Similarity=0.004  Sum_probs=95.8

Q ss_pred             cC-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284           44 YK-PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH  122 (284)
Q Consensus        44 ~~-p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~  122 (284)
                      ++ ++.-+....++..+...++.++|..+|..+..++|.+...|+..|.+.+.+| ++++|+.+|.+++.++|+++.+..
T Consensus        29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g-~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK-HWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCchHHH
Confidence            55 6666777777777777788899999999999999999999999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLD  150 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~d  150 (284)
                      |-|.++..+|+  .+.+.++++.++..-
T Consensus       108 ~ag~c~L~lG~--~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        108 AAAECYLACDN--VCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHcCC--HHHHHHHHHHHHHHh
Confidence            99999999999  999999999999865

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.1e-06  Score=82.28  Aligned_cols=187  Identities=11%  Similarity=0.139  Sum_probs=130.3

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      ++|...++|..++.+++..+..++.-.+...++.+.-.+..-|+.-+.++..-+ +++.+|.+.+++|..+|++.++..-
T Consensus       261 ~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alil  339 (564)
T KOG1174|consen  261 ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALIL  339 (564)
T ss_pred             CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHh
Confidence            455555556555555555544445555555555555455555555555554444 5889999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHh---HH--------------HHHHHHccC-----------------
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWS---YR--------------QWVLQALGG-----------------  169 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~---~r--------------~~vl~~l~~-----------------  169 (284)
                      +|.+|..+++  .++++-.|..+..+-|..-.++-   |-              .|++..++.                 
T Consensus       340 KG~lL~~~~R--~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp  417 (564)
T KOG1174|consen  340 KGRLLIALER--HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP  417 (564)
T ss_pred             ccHHHHhccc--hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc
Confidence            9999999999  88888888888888876554432   21              122222221                 


Q ss_pred             --cHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch--------------------------hhhhHHHHHHHHHHH
Q 023284          170 --WEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG--------------------------LIAMRDSEVNFTIEA  221 (284)
Q Consensus       170 --~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~--------------------------~~~~~~~el~~~~~~  221 (284)
                        -++|-.++++.+.++|...-|-+-+.-++..-|++.+                          +...+++++++|..+
T Consensus       418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A  497 (564)
T KOG1174|consen  418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA  497 (564)
T ss_pred             hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence              2688889999999999988888877776655444422                          123478999999999


Q ss_pred             HhcCCCCccHHH
Q 023284          222 ILGNPENESPWR  233 (284)
Q Consensus       222 i~~~P~nesaW~  233 (284)
                      |+++|+|+.+--
T Consensus       498 Lr~dP~~~~sl~  509 (564)
T KOG1174|consen  498 LRQDPKSKRTLR  509 (564)
T ss_pred             HhcCccchHHHH
Confidence            999999998753

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.76  E-value=5.2e-07  Score=92.91  Aligned_cols=157  Identities=10%  Similarity=0.016  Sum_probs=125.3

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHH--HHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFR--RQIIETLHTDLQDELAFVGRIAKSNSKNYQ  119 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R--~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~  119 (284)
                      ++.+|++..+..-...++...+..++|+..+++++  .|.+......+  +.++...| ++.+|++.+++++..+|++..
T Consensus        61 L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g-dyd~Aiely~kaL~~dP~n~~  137 (822)
T PRK14574         61 SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK-RWDQALALWQSSLKKDPTNPD  137 (822)
T ss_pred             HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHH
Confidence            44566664332233344445577789999999999  55554444444  66777778 699999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      ++.....+....++  .+++++.+.+++..+|.+... .-++.+....++..+|++.++++++.+|.|..+...+..++.
T Consensus       138 ~l~gLa~~y~~~~q--~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~  214 (822)
T PRK14574        138 LISGMIMTQADAGR--GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ  214 (822)
T ss_pred             HHHHHHHHHhhcCC--HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99877677777888  999999999999999997776 666777777778877999999999999999999999888888


Q ss_pred             cCCCC
Q 023284          200 RSPLL  204 (284)
Q Consensus       200 ~l~~~  204 (284)
                      .++..
T Consensus       215 ~~~~~  219 (822)
T PRK14574        215 RNRIV  219 (822)
T ss_pred             HcCCc
Confidence            87754

>PRK11906 transcriptional regulator; Provisional

Probab=98.76  E-value=6.6e-07  Score=85.15  Aligned_cols=130  Identities=9%  Similarity=-0.008  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHh---h-----hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284           66 SRSFQLTKEAI---CLNPGNYTVWHFRRQIIETL---H-----TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG  134 (284)
Q Consensus        66 ~~aL~~~~~~L---~lnP~~~~aW~~R~~~L~~l---~-----~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~  134 (284)
                      .+|+.++++++   .++|.+..++-.+.+|-...   |     .+..++++..+++++++|.+.+|-...|.++...++ 
T Consensus       275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~-  353 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ-  353 (458)
T ss_pred             HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-
Confidence            68999999999   99999999999888876554   1     246789999999999999999999999999999998 


Q ss_pred             CHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284          135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       135 ~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l  197 (284)
                       ++.++..+++++.++|+...+|++++|+...-|+.+++++.++++++++|.-..|=.-+-.+
T Consensus       354 -~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~  415 (458)
T PRK11906        354 -AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV  415 (458)
T ss_pred             -hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence             99999999999999999999999999999999999999999999999999987665544444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.75  E-value=6.6e-07  Score=79.02  Aligned_cols=162  Identities=10%  Similarity=0.093  Sum_probs=142.3

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      ..-+|+...+ -.+...+...+.++..+....+++..+|++.++..-.+......| ++..++.-+.++...+|++..+|
T Consensus        60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g-~~~~A~~~~rkA~~l~p~d~~~~  137 (257)
T COG5010          60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG-NFGEAVSVLRKAARLAPTDWEAW  137 (257)
T ss_pred             HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhc-chHHHHHHHHHHhccCCCChhhh
Confidence            4467888888 334444444555677888888889999999999988888888888 69999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      +-+|.++.++|+  .+++-.-|.+++++.|.+...-++.+..+.--|+++.|-..+..+...-+.|..+-+++.+++...
T Consensus       138 ~~lgaaldq~Gr--~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~  215 (257)
T COG5010         138 NLLGAALDQLGR--FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ  215 (257)
T ss_pred             hHHHHHHHHccC--hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence            999999999999  999999999999999999999999999999899999999999999999999999999999999888


Q ss_pred             CCCchh
Q 023284          202 PLLGGL  207 (284)
Q Consensus       202 ~~~~~~  207 (284)
                      |+.+.+
T Consensus       216 g~~~~A  221 (257)
T COG5010         216 GDFREA  221 (257)
T ss_pred             CChHHH
Confidence            876543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.74  E-value=4.7e-07  Score=75.59  Aligned_cols=115  Identities=10%  Similarity=0.045  Sum_probs=74.4

Q ss_pred             HHHHHHHhCCCc--HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284           71 LTKEAICLNPGN--YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKK  145 (284)
Q Consensus        71 ~~~~~L~lnP~~--~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~  145 (284)
                      .+..+++.++..  ..+|+..+.+....| ++++++..+++++.+.|+..   .+|...+.++...|+  +++++.++.+
T Consensus        21 ~l~~~~~~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--~~eA~~~~~~   97 (168)
T CHL00033         21 ILLRILPTTSGEKEAFTYYRDGMSAQSEG-EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--HTKALEYYFQ   97 (168)
T ss_pred             hhhHhccCCchhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence            333343444444  455566666666666 46777777777776655533   366677777777776  7777777777


Q ss_pred             HHHhCcCChhHHhHHHHHHH-------HccCcH-------HHHHHHHHHHhccCCCh
Q 023284          146 MLSLDAKNYHAWSYRQWVLQ-------ALGGWE-------DELDYCQMLLGEDIFNN  188 (284)
Q Consensus       146 aL~~dpkN~~AW~~r~~vl~-------~l~~~~-------eeL~~~~~~l~~dp~n~  188 (284)
                      ++.++|.+..+|.+++.++.       .+|+++       +++..+.+++..+|.+.
T Consensus        98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            77777777777777777766       444443       66667777888888765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=1.8e-07  Score=85.13  Aligned_cols=185  Identities=14%  Similarity=0.073  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284           48 FSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV  127 (284)
Q Consensus        48 ~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l  127 (284)
                      .++.+-+...++......++||..+...+...|.+.|..--..++-+.++ ..+++++++..+++.+|.|..+-.--+.-
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~-~~~~a~~lYk~vlk~~~~nvEaiAcia~~  333 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME-QQEDALQLYKLVLKLHPINVEAIACIAVG  333 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH-hHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence            35667777788888888899999999999999999999999999999999 59999999999999999998875433333


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC---ChHHHHHHHHHHhcCCCC
Q 023284          128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF---NNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~---n~sAW~~r~~ll~~l~~~  204 (284)
                      ..--++  .+-++.+|.++|++-..+...+.+.|.+...-+.++-.|.++.+++..--+   -...|++.|++.-..|..
T Consensus       334 yfY~~~--PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~  411 (478)
T KOG1129|consen  334 YFYDNN--PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF  411 (478)
T ss_pred             cccCCC--hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence            333344  889999999999999999999999999998888999999999999987542   347899999998888774


Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284          205 GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD  242 (284)
Q Consensus       205 ~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~  242 (284)
                             .-+-.|+.-+|..+|+|..+.+.+..+-...
T Consensus       412 -------nlA~rcfrlaL~~d~~h~ealnNLavL~~r~  442 (478)
T KOG1129|consen  412 -------NLAKRCFRLALTSDAQHGEALNNLAVLAARS  442 (478)
T ss_pred             -------HHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence                   4467788899999999999998877664443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.73  E-value=8.1e-07  Score=91.31  Aligned_cols=144  Identities=10%  Similarity=-0.006  Sum_probs=120.3

Q ss_pred             CcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHH----------------
Q 023284           38 PVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ----------------  101 (284)
Q Consensus        38 ~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~----------------  101 (284)
                      -...-.|+|.+.+||...-..+...+..++|++.++.++..+|+...+|++.|.+..+.+. +.                
T Consensus        20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv~~l~~~~~~~~   98 (906)
T PRK14720         20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLLNLIDSFSQNLK   98 (906)
T ss_pred             hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhhhhhhhcccccc
Confidence            3455679999999999999999888888999999999999999999999999997766552 22                


Q ss_pred             -HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284          102 -DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQML  180 (284)
Q Consensus       102 -~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~  180 (284)
                       ...+++-..+...|.+-.|...++.++.++|.  .+++.+.++++|+.||+|..+-++-+..+... +.++|++++.++
T Consensus        99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720         99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNE--NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence             33344444444455555899999999999999  99999999999999999999999999999888 888888888877


Q ss_pred             HhccC
Q 023284          181 LGEDI  185 (284)
Q Consensus       181 l~~dp  185 (284)
                      +.+.-
T Consensus       176 V~~~i  180 (906)
T PRK14720        176 IYRFI  180 (906)
T ss_pred             HHHHH
Confidence            77643

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.72  E-value=6e-07  Score=69.27  Aligned_cols=104  Identities=13%  Similarity=-0.023  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHH
Q 023284           84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAW  157 (284)
Q Consensus        84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW  157 (284)
                      .+++..+..+...| +++++++.++.++..+|++   ..++...+.++...|+  +++++..+++++..+|.+   ..++
T Consensus         3 ~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         3 EAYYDAALLVLKAG-DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--YADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHCCCCCcccHHH
Confidence            34566677777777 5888888888888888776   4677778888888887  888888888888888775   4577


Q ss_pred             hHHHHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284          158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA  190 (284)
                      ...+.++.+++++++++.+++++++.+|++..+
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            888888888888888888888888888887654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1e-07  Score=88.90  Aligned_cols=163  Identities=13%  Similarity=0.159  Sum_probs=137.3

Q ss_pred             CcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHH------------HHHHHHHHHHhhhCHHHHHH
Q 023284           38 PVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTV------------WHFRRQIIETLHTDLQDELA  105 (284)
Q Consensus        38 ~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~a------------W~~R~~~L~~l~~~~~~eL~  105 (284)
                      .+-.+.+++...+|...++.++.-....+.|+..+.++|.+.|++.++            |-.+|.-+..-| .+..+-+
T Consensus       192 a~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G-~y~~A~E  270 (486)
T KOG0550|consen  192 AIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG-NYRKAYE  270 (486)
T ss_pred             HHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc-chhHHHH
Confidence            455677889999999999998887777789999999999999999854            444444444556 5899999


Q ss_pred             HHHHHHHhCCCCh----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284          106 FVGRIAKSNSKNY----QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLL  181 (284)
Q Consensus       106 ~~~~~l~~~pkn~----~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l  181 (284)
                      +|..+|.++|.|.    ..+.+|+.+...+|+  +.+++..|+.++++||.-..|...|+.+...++.|++|.+.+++++
T Consensus       271 ~Yteal~idP~n~~~naklY~nra~v~~rLgr--l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~  348 (486)
T KOG0550|consen  271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM  348 (486)
T ss_pred             HHHHhhcCCccccchhHHHHHHhHhhhcccCC--chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999865    568889999999999  9999999999999999999999999999999999999999999999


Q ss_pred             hccCC--ChHHHHHHHHHHhcCCC
Q 023284          182 GEDIF--NNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       182 ~~dp~--n~sAW~~r~~ll~~l~~  203 (284)
                      +..-.  ....|-.-...|++..+
T Consensus       349 q~~~s~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  349 QLEKDCEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             hhccccchHHHHHHHHHHHHHhhh
Confidence            87755  55666555566664433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.71  E-value=2.7e-07  Score=93.52  Aligned_cols=160  Identities=11%  Similarity=0.027  Sum_probs=143.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF  142 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~  142 (284)
                      ..+..|+..+-++|+++|....+|.+.|.+....- +...|-.||+++..+||..+.+|-.-.-..-....  ++.+...
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~--we~a~~I  548 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEEST--WEEAFEI  548 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc--HHHHHHH
Confidence            34578999999999999999999999999999887 78899999999999999999999998888888777  9999999


Q ss_pred             HHHHHHhCcCCh--hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284          143 TKKMLSLDAKNY--HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE  220 (284)
Q Consensus       143 ~~~aL~~dpkN~--~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~  220 (284)
                      +-++-+++|.-.  ..|.+||-..-.-+.+-+++..+..+++.+|.+..+|.-.|.+....|++       ..++..+++
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry-------~~AlKvF~k  621 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY-------SHALKVFTK  621 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce-------ehHHHhhhh
Confidence            999999988665  67888887777777888999999999999999999999999999888886       567899999


Q ss_pred             HHhcCCCCccHH
Q 023284          221 AILGNPENESPW  232 (284)
Q Consensus       221 ~i~~~P~nesaW  232 (284)
                      +..++|.+-.+-
T Consensus       622 As~LrP~s~y~~  633 (1238)
T KOG1127|consen  622 ASLLRPLSKYGR  633 (1238)
T ss_pred             hHhcCcHhHHHH
Confidence            999999976554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.70  E-value=1.8e-06  Score=84.66  Aligned_cols=205  Identities=15%  Similarity=0.133  Sum_probs=160.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~  141 (284)
                      ++..++|+.+++.+|+..|.+...|..+|++...++ +++.+-+.|..-++..|.+...|.-..-+-.+-|.  +..+-.
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~--~~rAR~  740 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ--LVRARS  740 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc--hhhHHH
Confidence            344579999999999999999999999999999999 58999999999999999999999888888888887  899999


Q ss_pred             HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC------------ch---
Q 023284          142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL------------GG---  206 (284)
Q Consensus       142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~------------~~---  206 (284)
                      .++++.-++|+|...|.-..-+=.+.|..+.|-....++|..-|++.-.|.---++...-++-            +.   
T Consensus       741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl  820 (913)
T KOG0495|consen  741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL  820 (913)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence            999999999999999999888888899999999999999999999999998665554332221            00   


Q ss_pred             --------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhcccccccccc
Q 023284          207 --------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE  271 (284)
Q Consensus       207 --------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (284)
                              ...-++.+.+++.+++.++|++-.+|.+........|. -.++.++...| ++-+|---..||+-
T Consensus       821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~-eed~kev~~~c-~~~EP~hG~~W~av  891 (913)
T KOG0495|consen  821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGT-EEDQKEVLKKC-ETAEPTHGELWQAV  891 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCC-HHHHHHHHHHH-hccCCCCCcHHHHH
Confidence                    01225778899999999999999977655433333322 11222444333 33466666667754

>TIGR00540 hemY_coli hemY protein

Probab=98.69  E-value=3e-06  Score=80.89  Aligned_cols=178  Identities=6%  Similarity=-0.117  Sum_probs=124.2

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHH------------------------
Q 023284           56 RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIA------------------------  111 (284)
Q Consensus        56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l------------------------  111 (284)
                      ..+....+..++|++.++.+++.+|++..++...+.+....| +++++++.+..++                        
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~-d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~  238 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG-AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE  238 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            334444566788999999999999999999888888877766 3444444444443                        


Q ss_pred             --------------HhCC----CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH--hHHHHHHHHccCcH
Q 023284          112 --------------KSNS----KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW--SYRQWVLQALGGWE  171 (284)
Q Consensus       112 --------------~~~p----kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW--~~r~~vl~~l~~~~  171 (284)
                                    ...|    ++..++...+.++...|+  ++++++.++++++++|.+....  ..+......-++.+
T Consensus       239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~--~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~  316 (409)
T TIGR00540       239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD--HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE  316 (409)
T ss_pred             HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC--hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence                          3344    355555555555556666  8888888888888888887542  33333322335567


Q ss_pred             HHHHHHHHHHhccCCCh--HHHHHHHHHHhcCCCCchhhhhHHHHHHHHH--HHHhcCCCCccHHHHHHHHHccCCc
Q 023284          172 DELDYCQMLLGEDIFNN--SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI--EAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       172 eeL~~~~~~l~~dp~n~--sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~--~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                      ..++.++++++.+|.|.  ......|.++.+.+++       +++.++++  .++..+|+++... ++..++.+.+.
T Consensus       317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~-------~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~  385 (409)
T TIGR00540       317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF-------IEAADAFKNVAACKEQLDANDLA-MAADAFDQAGD  385 (409)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH-------HHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC
Confidence            78888888888888888  7777788888777763       67788888  5777888887755 66777766644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.68  E-value=5.1e-07  Score=64.51  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=87.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284           52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l  131 (284)
                      +...+.++...+..++|+..+..++...|.+..+|..++.++...+ ++++++++++.++...|++..+|...+.++...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG-KYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            3344455555677789999999999999999999999999999988 599999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCcC
Q 023284          132 GTGAVNKELQFTKKMLSLDAK  152 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpk  152 (284)
                      |+  ++++...+.++++.+|.
T Consensus        82 ~~--~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GK--YEEALEAYEKALELDPN  100 (100)
T ss_pred             Hh--HHHHHHHHHHHHccCCC
Confidence            98  99999999999998874

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.65  E-value=8.7e-07  Score=86.52  Aligned_cols=139  Identities=11%  Similarity=0.121  Sum_probs=125.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~  141 (284)
                      .+.+...|.+.+.+|+..|+|......+|..|..+| +-++|..++...+..++++.-+|+--|.+.+.-..  +.+++.
T Consensus        20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~--Y~eaiK   96 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK--YDEAIK   96 (700)
T ss_pred             HHHHHhHHHHHHHHHHhCCccchhHHhccchhhccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh--HHHHHH
Confidence            445578999999999999999999999999999999 58999999999999999999999999999888777  999999


Q ss_pred             HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284          142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~  203 (284)
                      ||..||.++|.|-..|.-...+-.++++++..++.=.+.++.+|++..-|.-....-.-++.
T Consensus        97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen   97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888755443333444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.64  E-value=5.9e-07  Score=90.96  Aligned_cols=171  Identities=16%  Similarity=-0.023  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK  144 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~  144 (284)
                      ..|..+++.+=.++-.+..-|..++..+...+. +++.+...|..++..+|+|..+...|..+...-++  |..+|.+|.
T Consensus       111 ~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd--Y~~al~yyk  188 (1018)
T KOG2002|consen  111 DKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKD--YRGALKYYK  188 (1018)
T ss_pred             HHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcccc--HHHHHHHHH
Confidence            457777777777777777778888877766663 37999999999999999999999999999998888  999999999


Q ss_pred             HHHHhCcCCh-hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHh
Q 023284          145 KMLSLDAKNY-HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAIL  223 (284)
Q Consensus       145 ~aL~~dpkN~-~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~  223 (284)
                      ++|.++|..- ..-..+|.++-++++.+.|+..+.+++++||.+.+|..-.+.+.......+    -++..+....++..
T Consensus       189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~----s~~~~~~ll~~ay~  264 (1018)
T KOG2002|consen  189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSD----SYKKGVQLLQRAYK  264 (1018)
T ss_pred             HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchH----HHHHHHHHHHHHHh
Confidence            9999998654 555677889999999999999999999999999999998887765554332    25778889999999


Q ss_pred             cCCCCccHHHHHHHHHccC
Q 023284          224 GNPENESPWRYLRGLYKDD  242 (284)
Q Consensus       224 ~~P~nesaW~y~~~ll~~~  242 (284)
                      .+|+|+.+-+++...+--.
T Consensus       265 ~n~~nP~~l~~LAn~fyfK  283 (1018)
T KOG2002|consen  265 ENNENPVALNHLANHFYFK  283 (1018)
T ss_pred             hcCCCcHHHHHHHHHHhhc
Confidence            9999999998887665543

>PRK11906 transcriptional regulator; Provisional

Probab=98.63  E-value=1.1e-06  Score=83.77  Aligned_cols=151  Identities=8%  Similarity=-0.011  Sum_probs=125.7

Q ss_pred             HHHhCCCcH---HHH----HHHHHHHHHhh--hCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHh---CC----CC
Q 023284           75 AICLNPGNY---TVW----HFRRQIIETLH--TDLQDELAFVGRIA---KSNSKNYQLWHHRRWVAEKL---GT----GA  135 (284)
Q Consensus        75 ~L~lnP~~~---~aW----~~R~~~L~~l~--~~~~~eL~~~~~~l---~~~pkn~~aW~hR~~ll~~l---~~----~~  135 (284)
                      +...-|.+.   .+|    +.||.-...-+  ...+.++.++.+++   .++|....++....|+....   |-    ..
T Consensus       240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~  319 (458)
T PRK11906        240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA  319 (458)
T ss_pred             hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            344457777   777    56665443322  24679999999999   99999999988888777543   21    12


Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEV  215 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el  215 (284)
                      ..+++.+.++++++||.|..|-...|.++...+.++.++..+++++.++|+...+|+++|+++.-.|+.       ++++
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~-------~~a~  392 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI-------EEAR  392 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-------HHHH
Confidence            677889999999999999999999999999999999999999999999999999999999998888874       7889


Q ss_pred             HHHHHHHhcCCCCccHH
Q 023284          216 NFTIEAILGNPENESPW  232 (284)
Q Consensus       216 ~~~~~~i~~~P~nesaW  232 (284)
                      +.++++++++|..-.+=
T Consensus       393 ~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        393 ICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             HHHHHHhccCchhhHHH
Confidence            99999999999977654

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=98.63  E-value=5.4e-08  Score=58.57  Aligned_cols=29  Identities=38%  Similarity=0.873  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284          103 ELAFVGRIAKSNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus       103 eL~~~~~~l~~~pkn~~aW~hR~~ll~~l  131 (284)
                      ||+++..+|..+||||++|+||+|+++++
T Consensus         2 El~~~~~~l~~~pknys~W~yR~~ll~~l   30 (31)
T PF01239_consen    2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL   30 (31)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence            44455555555555555555555554443

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.63  E-value=7e-06  Score=78.12  Aligned_cols=187  Identities=7%  Similarity=-0.038  Sum_probs=126.6

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------------------
Q 023284           57 AVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------------------  117 (284)
Q Consensus        57 ~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------------------  117 (284)
                      .+....+..+.|++.+++++..+|++..+......++...| +++++++.+.++.+..+.+                   
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g-dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG-AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34445566688888888889999999888888888887777 5777776666665544433                   


Q ss_pred             -----------------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284          118 -----------------------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL  174 (284)
Q Consensus       118 -----------------------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL  174 (284)
                                             ..+...-+..+...|+  .+++...+.++++..| +.....-.+.+  ..++.++++
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~--~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al  314 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD--HDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLE  314 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHH
Confidence                                   2233333333344455  7778888888887433 43333222222  126778899


Q ss_pred             HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHH
Q 023284          175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLL  254 (284)
Q Consensus       175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~  254 (284)
                      +..+++++.+|+|.......|.+....+.       ++++.+++++++...|+++. +..+..++...++    ...+..
T Consensus       315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~-------~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~----~~~A~~  382 (398)
T PRK10747        315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGE-------WQEASLAFRAALKQRPDAYD-YAWLADALDRLHK----PEEAAA  382 (398)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC----HHHHHH
Confidence            99999999999999888888888877776       47788899999999999765 3345556665543    345666


Q ss_pred             HHHhhhh
Q 023284          255 SVFESFE  261 (284)
Q Consensus       255 ~~~~~~~  261 (284)
                      ++.+++.
T Consensus       383 ~~~~~l~  389 (398)
T PRK10747        383 MRRDGLM  389 (398)
T ss_pred             HHHHHHh
Confidence            6666653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.63  E-value=5.9e-06  Score=81.05  Aligned_cols=50  Identities=12%  Similarity=0.137  Sum_probs=46.0

Q ss_pred             hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      +++++.+..+..+|.+++|+++++++|+..|.....+..++-++.+.|.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence            45577788899999999999999999999999999999999999999985

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=98.62  E-value=7.3e-08  Score=57.97  Aligned_cols=31  Identities=58%  Similarity=1.116  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284          138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALG  168 (284)
Q Consensus       138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~  168 (284)
                      +||+++..+|..||+||++|+||.|++.+++
T Consensus         1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l~   31 (31)
T PF01239_consen    1 DELEFTKKALEKDPKNYSAWNYRRWLLKQLN   31 (31)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHCcccccHHHHHHHHHHHcc
Confidence            5788889999999999999999999888764

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.59  E-value=2.1e-06  Score=84.40  Aligned_cols=143  Identities=13%  Similarity=0.028  Sum_probs=108.9

Q ss_pred             cChhHHHHHHHHHHHHh---cC--CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-------hCHHHHHHHHHHHH
Q 023284           44 YKPEFSETMSYFRAVYY---SD--ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-------TDLQDELAFVGRIA  111 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~---~~--~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-------~~~~~eL~~~~~~l  111 (284)
                      -.|...+||.++-....   ..  +...+|+.+++++++++|++..+|..+..+.....       ..+..+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            34566677766533222   11  12358999999999999999999998777553321       12345555566655


Q ss_pred             Hh--CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          112 KS--NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       112 ~~--~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      ..  +|....++.-.+.+....|+  ++++...++++++++| +..+|..+|.++...|+.++|++.+.+++.++|.+..
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~--~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGK--TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            53  67776666666666566677  9999999999999999 6889999999999999999999999999999999985

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.57  E-value=2.5e-06  Score=65.80  Aligned_cols=102  Identities=8%  Similarity=-0.035  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHR  124 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR  124 (284)
                      ++...+..+...+..++|+..+..++..+|++   ..+++.++.++...| ++++++..++.++..+|.+   ..++...
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-KYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            34444555566677799999999999999987   578999999999999 5999999999999999886   5789999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCChh
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYH  155 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~  155 (284)
                      +.++..+|+  +.+++..++++++..|++..
T Consensus        83 ~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        83 GMSLQELGD--KEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHhCC--hHHHHHHHHHHHHHCcCChh
Confidence            999999999  99999999999999999864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.53  E-value=4.8e-06  Score=81.67  Aligned_cols=183  Identities=15%  Similarity=0.179  Sum_probs=150.5

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      |+.=|+|...|...+++..+.+..+.|-+.|..-++.+|.....|.....+=...| .+..+-..++++...||||...|
T Consensus       678 lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lw  756 (913)
T KOG0495|consen  678 LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLW  756 (913)
T ss_pred             HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhH
Confidence            45668899999999999999998899999999999999999999998888877777 57899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc------------------------------CcH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG------------------------------GWE  171 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~------------------------------~~~  171 (284)
                      .-...+-.+.|.  .+.+-....+||+.-|++--.|.--.|+..+-+                              .++
T Consensus       757 le~Ir~ElR~gn--~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~  834 (913)
T KOG0495|consen  757 LESIRMELRAGN--KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIE  834 (913)
T ss_pred             HHHHHHHHHcCC--HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence            998888888888  899999999999999999999988666543221                              257


Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284          172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY  234 (284)
Q Consensus       172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y  234 (284)
                      ++.+++.+++..+|+|-.+|.+....-...|.-.       .-.+.+.+...-.|.+-..|.-
T Consensus       835 kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee-------d~kev~~~c~~~EP~hG~~W~a  890 (913)
T KOG0495|consen  835 KAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE-------DQKEVLKKCETAEPTHGELWQA  890 (913)
T ss_pred             HHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH-------HHHHHHHHHhccCCCCCcHHHH
Confidence            8999999999999998877765543333345321       2234556666789999999954

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.53  E-value=3.5e-07  Score=64.01  Aligned_cols=62  Identities=21%  Similarity=0.271  Sum_probs=38.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                      ++.++...|+  +++++.+++++++.+|.|..+|..+|.++...|++++|+..++++++++|+|
T Consensus         3 ~a~~~~~~g~--~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGD--YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTH--HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3445555555  6666666666666666666666666666666666666666666666666665

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=2e-06  Score=81.24  Aligned_cols=172  Identities=16%  Similarity=0.088  Sum_probs=142.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL--HTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKE  139 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l--~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ee  139 (284)
                      .+..+.|++.+...-+.+.+-..|-..--..|..+  |+++..+-.+-+.++.++-=|.++..++|.+...-|.  ++++
T Consensus       432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd--~dka  509 (840)
T KOG2003|consen  432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD--LDKA  509 (840)
T ss_pred             ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc--HHHH
Confidence            33446777776555555555444443333344444  7788899999999999999999999999999998898  9999


Q ss_pred             HHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 023284          140 LQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI  219 (284)
Q Consensus       140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~  219 (284)
                      +++|..+|.-|.....|.++.|.....+|+.++||+|+-++-.+-.+|..+......+...+...       ..+|+.+.
T Consensus       510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~-------aqaie~~~  582 (840)
T KOG2003|consen  510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP-------AQAIELLM  582 (840)
T ss_pred             HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH-------HHHHHHHH
Confidence            99999999999999999999999999999999999999999999899999999888888777653       45789999


Q ss_pred             HHHhcCCCCccHHHHHHHHHccC
Q 023284          220 EAILGNPENESPWRYLRGLYKDD  242 (284)
Q Consensus       220 ~~i~~~P~nesaW~y~~~ll~~~  242 (284)
                      ++-.+-|+++..-.-+.-++..-
T Consensus       583 q~~slip~dp~ilskl~dlydqe  605 (840)
T KOG2003|consen  583 QANSLIPNDPAILSKLADLYDQE  605 (840)
T ss_pred             HhcccCCCCHHHHHHHHHHhhcc
Confidence            99999999999887777777654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=8.2e-07  Score=87.71  Aligned_cols=162  Identities=9%  Similarity=0.127  Sum_probs=123.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---------------------------hhCHHHH
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL---------------------------HTDLQDE  103 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l---------------------------~~~~~~e  103 (284)
                      .|.-.--++...+...+|-.+-.+-|+ +|.+.-.|-.+|.++...                           ..+++++
T Consensus       426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~  504 (777)
T KOG1128|consen  426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEA  504 (777)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHH
Confidence            344333444444555566666666666 666666666666665321                           1258889


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284          104 LAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       104 L~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~  183 (284)
                      .+.++..++++|-..+.|+.+|.+--++++  ++.+..+|.+.+.++|.|..+|++....+.+++.-.+|..+..++++-
T Consensus       505 ~~hle~sl~~nplq~~~wf~~G~~ALqlek--~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  505 DKHLERSLEINPLQLGTWFGLGCAALQLEK--EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             HHHHHHHhhcCccchhHHHhccHHHHHHhh--hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            999999999999999999999999999988  899999999999999999999999999998888888999999999999


Q ss_pred             cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284          184 DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       184 dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      +-+|-..|-+--.+....+..       +.++..+.+.+
T Consensus       583 n~~~w~iWENymlvsvdvge~-------eda~~A~~rll  614 (777)
T KOG1128|consen  583 NYQHWQIWENYMLVSVDVGEF-------EDAIKAYHRLL  614 (777)
T ss_pred             CCCCCeeeechhhhhhhcccH-------HHHHHHHHHHH
Confidence            988888998888887777764       44555555443

>TIGR00540 hemY_coli hemY protein

Probab=98.51  E-value=6.1e-06  Score=78.75  Aligned_cols=142  Identities=8%  Similarity=-0.115  Sum_probs=111.7

Q ss_pred             HHHHHHHHhCC----CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHhCCCCHHHHHHHH
Q 023284           70 QLTKEAICLNP----GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW--HHRRWVAEKLGTGAVNKELQFT  143 (284)
Q Consensus        70 ~~~~~~L~lnP----~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW--~hR~~ll~~l~~~~~~eel~~~  143 (284)
                      +....+....|    ++..++...+..+...| +.+++++.++++++..|.+....  ..++......++  ....++.+
T Consensus       246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~--~~~~~~~~  322 (409)
T TIGR00540       246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED--NEKLEKLI  322 (409)
T ss_pred             HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC--hHHHHHHH
Confidence            35555566666    47777877778788888 59999999999999999998653  333333322344  78899999


Q ss_pred             HHHHHhCcCCh--hHHhHHHHHHHHccCcHHHHHHHH--HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 023284          144 KKMLSLDAKNY--HAWSYRQWVLQALGGWEDELDYCQ--MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI  219 (284)
Q Consensus       144 ~~aL~~dpkN~--~AW~~r~~vl~~l~~~~eeL~~~~--~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~  219 (284)
                      +++++.+|.|.  ......||++.+.|+|++|.++++  .+++.+|++..+. +.+.++.++|+.       +++.+++.
T Consensus       323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~-------~~A~~~~~  394 (409)
T TIGR00540       323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDK-------AEAAAMRQ  394 (409)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCH-------HHHHHHHH
Confidence            99999999999  778889999999999999999999  6888999888755 889999999986       44455555


Q ss_pred             HHH
Q 023284          220 EAI  222 (284)
Q Consensus       220 ~~i  222 (284)
                      +++
T Consensus       395 ~~l  397 (409)
T TIGR00540       395 DSL  397 (409)
T ss_pred             HHH
Confidence            543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.49  E-value=1.5e-05  Score=70.49  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=140.2

Q ss_pred             CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284           65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK  144 (284)
Q Consensus        65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~  144 (284)
                      ...+....-.....+|++..+ ......+...| +-...+....+++..+|++..+-.--|......|+  +.+++..+.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G-~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--~~~A~~~~r  124 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRG-DADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--FGEAVSVLR  124 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcc-cccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--hHHHHHHHH
Confidence            345888888888999999999 77777777777 45678888899999999998888777777778888  999999999


Q ss_pred             HHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284          145 KMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG  224 (284)
Q Consensus       145 ~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~  224 (284)
                      ++..++|.|..+|+-+|.++.++|++++|-..|.+++++.|.+.++.++.+..+.--++.       +.+...+..+...
T Consensus       125 kA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~-------~~A~~lll~a~l~  197 (257)
T COG5010         125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL-------EDAETLLLPAYLS  197 (257)
T ss_pred             HHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH-------HHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999887666663       4556666666666


Q ss_pred             CCCCccHHHHHHHHHccC
Q 023284          225 NPENESPWRYLRGLYKDD  242 (284)
Q Consensus       225 ~P~nesaW~y~~~ll~~~  242 (284)
                      -+.|..+=..+..+....
T Consensus       198 ~~ad~~v~~NLAl~~~~~  215 (257)
T COG5010         198 PAADSRVRQNLALVVGLQ  215 (257)
T ss_pred             CCCchHHHHHHHHHHhhc
Confidence            666777766666665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=3.4e-05  Score=73.57  Aligned_cols=122  Identities=11%  Similarity=0.007  Sum_probs=115.6

Q ss_pred             CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284           80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY  159 (284)
Q Consensus        80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~  159 (284)
                      |.-..+|+-+.......+ .+.+++..++.++...|+|...|-.++.++...++  ..++++.+++++.++|...-.|..
T Consensus       303 ~~~~aa~YG~A~~~~~~~-~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--~~~A~e~~~kal~l~P~~~~l~~~  379 (484)
T COG4783         303 RGGLAAQYGRALQTYLAG-QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--AKEAIERLKKALALDPNSPLLQLN  379 (484)
T ss_pred             ccchHHHHHHHHHHHHhc-ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCccHHHHH
Confidence            889999999888888888 58999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          160 RQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       160 r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      .+.++.+.|+..+++...++.+..+|.|...|.+.+.....+|..
T Consensus       380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            999999999999999999999999999999999999988888764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.45  E-value=3.7e-06  Score=86.59  Aligned_cols=124  Identities=9%  Similarity=-0.079  Sum_probs=106.9

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH-----------------
Q 023284           75 AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN-----------------  137 (284)
Q Consensus        75 ~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~-----------------  137 (284)
                      +....|.+..+|..........+ ++++++..++.++..+|+...+|++.|.++.+.++  +.                 
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~--~~~~~lv~~l~~~~~~~~~   99 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSEN-LTDEAKDICEEHLKEHKKSISALYISGILSLSRRP--LNDSNLLNLIDSFSQNLKW   99 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc--hhhhhhhhhhhhcccccch
Confidence            55689999999999888887778 69999999999999999999999999998877664  22                 


Q ss_pred             HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      ..++++...+...+.|-.|...++.++.++|+++++.+.++++|+.||.|..|.++.+..+...
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence            3344455555556666699999999999999999999999999999999999999999988776

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.44  E-value=1.1e-05  Score=79.30  Aligned_cols=146  Identities=7%  Similarity=-0.095  Sum_probs=109.7

Q ss_pred             HhCCCcHHHHH--HHHHHHHHhh--hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---CC---CCHHHHHHHHHHH
Q 023284           77 CLNPGNYTVWH--FRRQIIETLH--TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL---GT---GAVNKELQFTKKM  146 (284)
Q Consensus        77 ~lnP~~~~aW~--~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l---~~---~~~~eel~~~~~a  146 (284)
                      ..-|.+.+||-  .|+.-+...+  .....++.+++++++.+|.+..+|..+.++....   +.   .....+.....++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            45677777775  3443332221  2377999999999999999999999887765432   11   0134455566666


Q ss_pred             HHh--CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284          147 LSL--DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG  224 (284)
Q Consensus       147 L~~--dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~  224 (284)
                      +.+  +|.+..++.-.+.+....|++++|...++++++++| +.-+|..+|.++...|+.       +++++.+.+++++
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~-------~eA~~~~~~A~~L  482 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN-------RLAADAYSTAFNL  482 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Confidence            664  777766666566666667899999999999999999 578999999999888884       7899999999999


Q ss_pred             CCCCcc
Q 023284          225 NPENES  230 (284)
Q Consensus       225 ~P~nes  230 (284)
                      +|.++.
T Consensus       483 ~P~~pt  488 (517)
T PRK10153        483 RPGENT  488 (517)
T ss_pred             CCCCch
Confidence            999985

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.41  E-value=1.4e-06  Score=60.93  Aligned_cols=62  Identities=18%  Similarity=0.289  Sum_probs=45.0

Q ss_pred             HHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC
Q 023284           89 RRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN  153 (284)
Q Consensus        89 R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN  153 (284)
                      ++..+...| ++++++.+++.++..+|++..+|...|.++...|+  +++++..++++++++|.|
T Consensus         3 ~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQG-DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR--YDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCC
Confidence            455666666 47777777777777777777777777777777777  777777777777777776

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=5.1e-06  Score=82.26  Aligned_cols=183  Identities=11%  Similarity=0.049  Sum_probs=135.2

Q ss_pred             cChhHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           44 YKPEFSETMSY---FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        44 ~~p~~~~a~~~---~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      |-|..+..|..   +.-++.+.+-...|+..+++.        ..|-..-.|+..+|. -.++-.+..+-++ .|...-.
T Consensus       390 ya~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~-~~kaeei~~q~le-k~~d~~l  459 (777)
T KOG1128|consen  390 YAPHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQ-HGKAEEINRQELE-KDPDPRL  459 (777)
T ss_pred             ccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcc-cchHHHHHHHHhc-CCCcchh
Confidence            44444444443   344566677777888888875        445556667777773 4455555555555 5555556


Q ss_pred             HHHHHHHHHHh---------------------C-----CCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284          121 WHHRRWVAEKL---------------------G-----TGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL  174 (284)
Q Consensus       121 W~hR~~ll~~l---------------------~-----~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL  174 (284)
                      |..+|-++...                     |     +..+.++...++..++++|--...|+.+|.+--++++++.+.
T Consensus       460 yc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  460 YCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             HHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence            65555444210                     1     123889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      .+|.+.+..+|+|..+|++......+++.-       +++..+..++++-+-+|-..|.+...+..+.+
T Consensus       540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k-------~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg  601 (777)
T KOG1128|consen  540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKK-------KRAFRKLKEALKCNYQHWQIWENYMLVSVDVG  601 (777)
T ss_pred             HHHHHHhhcCCCchhhhhhhhHHHHHHhhh-------HHHHHHHHHHhhcCCCCCeeeechhhhhhhcc
Confidence            999999999999999999998887777653       56777888899989888889987777666543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.36  E-value=1.7e-06  Score=82.39  Aligned_cols=69  Identities=9%  Similarity=-0.080  Sum_probs=42.8

Q ss_pred             hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ---LWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~---aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      .+|+++.+|+++|.++..+| ++++++.+|+++|.++|.+..   +|++++.++..+|+  ++++++++.+++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lG-ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKG-RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--GKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence            36666666666666666666 366666666666666666653   36666666666666  66666666666665

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.36  E-value=0.00015  Score=68.97  Aligned_cols=183  Identities=10%  Similarity=-0.037  Sum_probs=128.8

Q ss_pred             hcCCCCHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 023284           60 YSDERSSRSFQLTKEAICLNPGNYTVWH-FRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNK  138 (284)
Q Consensus        60 ~~~~~s~~aL~~~~~~L~lnP~~~~aW~-~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~e  138 (284)
                      ...+..++|.+.+.++.+.+|++..+-. ....+....| +++.++..++++...+|++..+......++...|+  +++
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g-~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd--w~~  205 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN-ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA--WSS  205 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--HHH
Confidence            4456678999999999999999875543 3366666667 69999999999999999999999999888888887  777


Q ss_pred             HHHHHHHHHHhCcC------------------------------------------ChhHHhHHHHHHHHccCcHHHHHH
Q 023284          139 ELQFTKKMLSLDAK------------------------------------------NYHAWSYRQWVLQALGGWEDELDY  176 (284)
Q Consensus       139 el~~~~~aL~~dpk------------------------------------------N~~AW~~r~~vl~~l~~~~eeL~~  176 (284)
                      +++.+.++.+..+.                                          +..+..-.+-.+...|..++|...
T Consensus       206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~  285 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI  285 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            77666655544433                                          333444445555566677888888


Q ss_pred             HHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHH
Q 023284          177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSV  256 (284)
Q Consensus       177 ~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~  256 (284)
                      +.++++..| +.......+.+..  +.       .+++++.++++++.+|+|+.....++.++...+.    .+.+...+
T Consensus       286 L~~~l~~~~-~~~l~~l~~~l~~--~~-------~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~----~~~A~~~l  351 (398)
T PRK10747        286 ILDGLKRQY-DERLVLLIPRLKT--NN-------PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE----WQEASLAF  351 (398)
T ss_pred             HHHHHhcCC-CHHHHHHHhhccC--CC-------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC----HHHHHHHH
Confidence            888888444 4444433333321  22       3668999999999999999877666666555432    34444444


Q ss_pred             Hhh
Q 023284          257 FES  259 (284)
Q Consensus       257 ~~~  259 (284)
                      -.+
T Consensus       352 e~a  354 (398)
T PRK10747        352 RAA  354 (398)
T ss_pred             HHH
Confidence            444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.36  E-value=4.6e-06  Score=81.62  Aligned_cols=126  Identities=11%  Similarity=0.142  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      .|.+-|++.+.+|+..|++...-.-+|..|..+|+  -++|.+++...+..|++..-+|+--|.+.+.-+.|++|+.||.
T Consensus        22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~   99 (700)
T KOG1156|consen   22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR   99 (700)
T ss_pred             HHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence            48899999999999999999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284          179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWR  233 (284)
Q Consensus       179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~  233 (284)
                      .|+.++|+|-+.|.-...+-.+++.+.+.       ++-=.+.++..|++-..|.
T Consensus       100 nAl~~~~dN~qilrDlslLQ~QmRd~~~~-------~~tr~~LLql~~~~ra~w~  147 (700)
T KOG1156|consen  100 NALKIEKDNLQILRDLSLLQIQMRDYEGY-------LETRNQLLQLRPSQRASWI  147 (700)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHhhhhhHHHHH
Confidence            99999999999999888887777765432       2223456778888777764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=2.7e-05  Score=73.09  Aligned_cols=190  Identities=12%  Similarity=0.108  Sum_probs=136.7

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR  125 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~  125 (284)
                      |+..+.+.-.+.++.-.+.+.+|+..|+++..+||...++----+.+|..-| +++.--+....++.++.....-|.=-+
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~~wfV~~  307 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-GCEQDSALMDYLFAKVKYTASHWFVHA  307 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-CHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence            3445555556666666667778888888888888888777777777777666 476666667777777766666676666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC--CC
Q 023284          126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS--PL  203 (284)
Q Consensus       126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l--~~  203 (284)
                      .++..-.+  +..+|.+.+++|..+|+|..+..-+|.++..+++.++|.-.|..++.+-|..-..  |+|.+..-|  ++
T Consensus       308 ~~l~~~K~--~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~--Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  308 QLLYDEKK--FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI--YRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhh--HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhhch
Confidence            66666666  8999999999999999999999999999999999999999999999998876543  333332111  11


Q ss_pred             Cch-----------------------------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          204 LGG-----------------------------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       204 ~~~-----------------------------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                      ..+                             .....+++-.++++.|.++|+.--+-+-+.-++.
T Consensus       384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~  449 (564)
T KOG1174|consen  384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ  449 (564)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence            100                             1123477888999999999997666655554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.2e-05  Score=70.95  Aligned_cols=123  Identities=17%  Similarity=0.151  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL-GTGAVNKELQFTK  144 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l-~~~~~~eel~~~~  144 (284)
                      ++.+.-.+..|..||.|..-|...|.+...++ ++..++..|.+++++.|+|...|..-+.++... |...-.++-..++
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~-~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALG-RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            45677788899999999999999999999999 599999999999999999999999998888755 3334667889999


Q ss_pred             HHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          145 KMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       145 ~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      ++|..||.|..+-++.+.....-|++.+|+...+.+++..|-|..
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999999999999999999999999988754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.34  E-value=3.7e-06  Score=59.93  Aligned_cols=66  Identities=21%  Similarity=0.268  Sum_probs=51.4

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          127 VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       127 ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      ++.+.++  ++++++++++++.++|.+..+|..+|.++..+|++++|++.++++++..|++..+-..+
T Consensus         4 ~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    4 IYLQQED--YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHhCCC--HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            3444555  88888888888888888888888888888888888888888888888888777665433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=5.8e-05  Score=71.98  Aligned_cols=132  Identities=11%  Similarity=0.052  Sum_probs=116.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF  142 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~  142 (284)
                      +..++|+..++.++...|+|...|..++.++...++ ..++++.+.+++..+|.++..|...+..+.+.|+  +.+++..
T Consensus       320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~--~~eai~~  396 (484)
T COG4783         320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK-AKEAIERLKKALALDPNSPLLQLNLAQALLKGGK--PQEAIRI  396 (484)
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC--hHHHHHH
Confidence            444789999999999999999999999999999994 8999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l  197 (284)
                      ++..+..+|.|...|.+.+-+...+|+-.++...+-+.....-+-..|-......
T Consensus       397 L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         397 LNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             HHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999999999999999999988888877777666655444444433333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.32  E-value=2.2e-06  Score=63.26  Aligned_cols=79  Identities=14%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSK--NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDY  176 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pk--n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~  176 (284)
                      ++++|+.++++++..+|.  +...|...+.++.+.|+  +.+++.++++ ++.+++|..+....+.++..+|++++|++.
T Consensus         4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            466777777777777774  45566667777777776  7777777777 667777766666667777777777777776


Q ss_pred             HHHH
Q 023284          177 CQML  180 (284)
Q Consensus       177 ~~~~  180 (284)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            6653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=5e-06  Score=75.89  Aligned_cols=176  Identities=15%  Similarity=0.082  Sum_probs=141.2

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      -|...+.......+....+..++|+++|..+++..|.|.++-..-+--...-+ ..+=+|.+++++|++--.+.+.+.+-
T Consensus       286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~-~PE~AlryYRRiLqmG~~speLf~Ni  364 (478)
T KOG1129|consen  286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN-NPEMALRYYRRILQMGAQSPELFCNI  364 (478)
T ss_pred             CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC-ChHHHHHHHHHHHHhcCCChHHHhhH
Confidence            45555555555666667777789999999999999999876543322222222 46889999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCc---CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDA---KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dp---kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      |.+...-++  ++-.|.++.+++..-.   .-...|++.|.+.-..|++.-|-.|+.-+|.-|++|..|+++.+.+-.+-
T Consensus       365 gLCC~yaqQ--~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~  442 (478)
T KOG1129|consen  365 GLCCLYAQQ--IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS  442 (478)
T ss_pred             HHHHHhhcc--hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence            999888877  9999999999998543   45688999999999999999999999999999999999999999988877


Q ss_pred             CCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          202 PLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       202 ~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      |...+       +-..+..+-.+.|+-..
T Consensus       443 G~i~~-------Arsll~~A~s~~P~m~E  464 (478)
T KOG1129|consen  443 GDILG-------ARSLLNAAKSVMPDMAE  464 (478)
T ss_pred             CchHH-------HHHHHHHhhhhCccccc
Confidence            87533       44455566667776544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=1.8e-05  Score=74.93  Aligned_cols=169  Identities=12%  Similarity=0.082  Sum_probs=146.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~  141 (284)
                      +.+.-+|-.+.+.++.++--+..|..++|.+...-| +++++++++..+|..+..+.++.++-|.....+|+  ++++|+
T Consensus       469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ng-d~dka~~~ykeal~ndasc~ealfniglt~e~~~~--ldeald  545 (840)
T KOG2003|consen  469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANG-DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN--LDEALD  545 (840)
T ss_pred             ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecC-cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC--HHHHHH
Confidence            444467888889999999999999999999988888 79999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch---------------
Q 023284          142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG---------------  206 (284)
Q Consensus       142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~---------------  206 (284)
                      |+-++-.+=-.|.......+.++..+.+...|++++-++...-|.+.....-.+-+..+-|.-+.               
T Consensus       546 ~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n  625 (840)
T KOG2003|consen  546 CFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN  625 (840)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc
Confidence            99999999999999999999999999999999999999999999999999888877665442110               


Q ss_pred             ------------hhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284          207 ------------LIAMRDSEVNFTIEAILGNPENESPWRY  234 (284)
Q Consensus       207 ------------~~~~~~~el~~~~~~i~~~P~nesaW~y  234 (284)
                                  .....+++|.+++++-.+.|+ .+-|..
T Consensus       626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~-~~kwql  664 (840)
T KOG2003|consen  626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPN-QSKWQL  664 (840)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc-HHHHHH
Confidence                        013457888999998888887 677754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.26  E-value=3.2e-05  Score=69.72  Aligned_cols=105  Identities=9%  Similarity=-0.074  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHH-HhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC---ChhH
Q 023284           84 TVWHFRRQIIE-TLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK---NYHA  156 (284)
Q Consensus        84 ~aW~~R~~~L~-~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk---N~~A  156 (284)
                      ..++.....+. ..+ ++.+++..|+.++..+|++   ..+++..|.++...|+  +++++..+.++++.+|.   ...+
T Consensus       143 ~~~Y~~A~~l~~~~~-~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~--~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        143 NTDYNAAIALVQDKS-RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK--KDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCcchhHH
Confidence            56666665543 334 5788888888888888887   3678888888888887  88888888888876665   5677


Q ss_pred             HhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284          157 WSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW  191 (284)
Q Consensus       157 W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW  191 (284)
                      |...+.++..+|+.++|...++++++.+|+...|=
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            88888888888888888888888888888776553

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.25  E-value=3.2e-05  Score=69.69  Aligned_cols=97  Identities=10%  Similarity=0.053  Sum_probs=86.4

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHH
Q 023284           57 AVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK---NYQLWHHRRWVAEK  130 (284)
Q Consensus        57 ~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk---n~~aW~hR~~ll~~  130 (284)
                      .++.+.+..++|+..|..+|...|++   ..++++.|.++...| ++++++..|.+++..+|+   ...+|...+.++..
T Consensus       151 ~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~  229 (263)
T PRK10803        151 ALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD  229 (263)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence            33344566789999999999999998   489999999999999 699999999999987766   68999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284          131 LGTGAVNKELQFTKKMLSLDAKNYHA  156 (284)
Q Consensus       131 l~~~~~~eel~~~~~aL~~dpkN~~A  156 (284)
                      +|+  .++++..++++++..|+...+
T Consensus       230 ~g~--~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        230 KGD--TAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             cCC--HHHHHHHHHHHHHHCcCCHHH
Confidence            999  999999999999999998765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.22  E-value=1.4e-05  Score=76.19  Aligned_cols=69  Identities=10%  Similarity=0.061  Sum_probs=51.5

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHhhhCHHHHHHHHHHHHHh
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTV---WHFRRQIIETLHTDLQDELAFVGRIAKS  113 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~a---W~~R~~~L~~l~~~~~~eL~~~~~~l~~  113 (284)
                      -+|++..++..++..+.+.++.++|+.+++++|.++|++..+   |++++.++..+| ++++++.++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-r~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-EGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            567777777777777777777777777777777777777744   777777777777 477777777777776

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.21  E-value=1.4e-05  Score=68.54  Aligned_cols=98  Identities=15%  Similarity=0.126  Sum_probs=84.2

Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284           90 RQIIETLHTDLQDELAFVGRIAKSNSKNYQ-----LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL  164 (284)
Q Consensus        90 ~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~-----aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl  164 (284)
                      |.-+..-| +++++..-|..+|.+.|...+     .+.+|+..+.+++.  .+.+++.|.++|+++|.+..|.-.|+.++
T Consensus       102 GN~~F~ng-dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--~e~aI~dcsKaiel~pty~kAl~RRAeay  178 (271)
T KOG4234|consen  102 GNELFKNG-DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--WESAIEDCSKAIELNPTYEKALERRAEAY  178 (271)
T ss_pred             HHHhhhcc-cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--HHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence            33344445 588888888888888887664     56778888888988  99999999999999999999999999999


Q ss_pred             HHccCcHHHHHHHHHHHhccCCChHH
Q 023284          165 QALGGWEDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       165 ~~l~~~~eeL~~~~~~l~~dp~n~sA  190 (284)
                      .++..+++|++-|.+.++.||++..|
T Consensus       179 ek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            99999999999999999999998855

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.19  E-value=0.00051  Score=55.78  Aligned_cols=173  Identities=16%  Similarity=0.196  Sum_probs=125.8

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHhhhCHHHHHHHHHHHHHhCC---CChHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQ-IIETLHTDLQDELAFVGRIAKSNS---KNYQL  120 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~-~L~~l~~~~~~eL~~~~~~l~~~p---kn~~a  120 (284)
                      .+....++...+......+...+++..+..++...+.....+..... ++...+ .+..++.++.+++..+|   .....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~  169 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG-DYEEALELYEKALELDPELNELAEA  169 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCccchHHH
Confidence            33344444444555555555678888888888888887766777766 677777 58888888888887776   34455


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK-NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk-N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      ...++..+...+.  +..++..+.+++...+. ...++...+..+...+.++.++..+.+++...|.....+...+..+.
T Consensus       170 ~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         170 LLALGALLEALGR--YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHHhhhHHHHhcC--HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            5555555666666  88888888888888888 68888888888888888888888888888888886667777776666


Q ss_pred             cCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284          200 RSPLLGGLIAMRDSEVNFTIEAILGNPE  227 (284)
Q Consensus       200 ~l~~~~~~~~~~~~el~~~~~~i~~~P~  227 (284)
                      ..+.       ++++.....+++..+|.
T Consensus       248 ~~~~-------~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         248 ELGR-------YEEALEALEKALELDPD  268 (291)
T ss_pred             HcCC-------HHHHHHHHHHHHHhCcc
Confidence            3332       35667778888888886

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=9.4e-06  Score=70.38  Aligned_cols=111  Identities=13%  Similarity=0.038  Sum_probs=91.9

Q ss_pred             CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284           81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR  160 (284)
Q Consensus        81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r  160 (284)
                      .-+...+-||.+..++|. ..=+-.-+.++|.++|+-+.+.++.|.-+..-|+  ++.+++.++.++++||.+-.|--+|
T Consensus        63 eRA~l~fERGvlYDSlGL-~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          63 ERAQLLFERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--FDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             HHHHHHHHhcchhhhhhH-HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--chHHHHHhhhHhccCCcchHHHhcc
Confidence            346778888888888884 4445556678899999999999999988888888  8999999999999999999999999


Q ss_pred             HHHHHHccCcHHHHHHHHHHHhccCCCh--HHHHHH
Q 023284          161 QWVLQALGGWEDELDYCQMLLGEDIFNN--SAWNQR  194 (284)
Q Consensus       161 ~~vl~~l~~~~eeL~~~~~~l~~dp~n~--sAW~~r  194 (284)
                      |..+..-|++.-|.+-+.+.-..||++.  +.|.|.
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl  175 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL  175 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence            9888888898888888888888888887  566654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=3.2e-05  Score=72.39  Aligned_cols=145  Identities=16%  Similarity=0.071  Sum_probs=101.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG  134 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~  134 (284)
                      ++..+.+.+....|...|++++..-.....+             +.++.-.....-+       .+..+-..++.+++. 
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-------------~~ee~~~~~~~k~-------~~~lNlA~c~lKl~~-  272 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-------------DEEEQKKAEALKL-------ACHLNLAACYLKLKE-  272 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccC-------------CHHHHHHHHHHHH-------HHhhHHHHHHHhhhh-
Confidence            4556666666677888887776643221111             1111111111111       233456677788888 


Q ss_pred             CHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHH
Q 023284          135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSE  214 (284)
Q Consensus       135 ~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~e  214 (284)
                       +.+++..|+++|+++|+|.-|.+.||-++..++.++.|...+.++++.+|.|..+-.....+..+...+      .+.+
T Consensus       273 -~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~------~~ke  345 (397)
T KOG0543|consen  273 -YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY------EEKE  345 (397)
T ss_pred             -HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH------HHHH
Confidence             999999999999999999999999999999999999999999999999999988877666665554432      3556


Q ss_pred             HHHHHHHHhcCCC
Q 023284          215 VNFTIEAILGNPE  227 (284)
Q Consensus       215 l~~~~~~i~~~P~  227 (284)
                      -+.+.+.+..-+.
T Consensus       346 kk~y~~mF~k~~~  358 (397)
T KOG0543|consen  346 KKMYANMFAKLAE  358 (397)
T ss_pred             HHHHHHHhhcccc
Confidence            6677777665553

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.16  E-value=1.5e-05  Score=56.68  Aligned_cols=61  Identities=16%  Similarity=0.315  Sum_probs=36.8

Q ss_pred             HhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           59 YYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        59 ~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      +.+.+..++|+++++.++.++|++..+|..++.++..+| ++.+++..++++++.+|.+..+
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG-RYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCcHHH
Confidence            334444566666666666666666666666666666666 3666666666666666655544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.16  E-value=2.4e-05  Score=67.13  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPGNY-----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG  132 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~~~-----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~  132 (284)
                      -+.+.+.+++|..-|..+|.++|...     ..+.+|+.++..++. ++.+++-|.++|.++|.+-.|...|..++.++.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRAEAYEKME  182 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence            34456667899999999999999876     466788888889984 999999999999999999999999999999997


Q ss_pred             CCCHHHHHHHHHHHHHhCcCChhH
Q 023284          133 TGAVNKELQFTKKMLSLDAKNYHA  156 (284)
Q Consensus       133 ~~~~~eel~~~~~aL~~dpkN~~A  156 (284)
                      .  ++++|+.|.+++++||++-.|
T Consensus       183 k--~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  183 K--YEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             h--HHHHHHHHHHHHHhCcchHHH
Confidence            7  999999999999999998754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.15  E-value=5.6e-05  Score=60.06  Aligned_cols=95  Identities=15%  Similarity=0.171  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC---ChHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF---NNSAWN  192 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~---n~sAW~  192 (284)
                      .++++++|++..+|+  .++++.+|.+++......   ..++...+..+..+|++++|+..+++.+...|+   +..+..
T Consensus         2 ~~~~~~A~a~d~~G~--~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHDSLGR--EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             chHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence            456777777777777  777788888777754333   457777777777888888888888888777777   667777


Q ss_pred             HHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284          193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      ....+|..+++.       +++++.+..++
T Consensus        80 f~Al~L~~~gr~-------~eAl~~~l~~l  102 (120)
T PF12688_consen   80 FLALALYNLGRP-------KEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHCCCH-------HHHHHHHHHHH
Confidence            777777777774       44555544444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.15  E-value=7.2e-06  Score=60.42  Aligned_cols=80  Identities=13%  Similarity=0.112  Sum_probs=71.4

Q ss_pred             CCCHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284           63 ERSSRSFQLTKEAICLNPG--NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL  140 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~--~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel  140 (284)
                      +..++|+.++++++...|.  +..+|...+.++...| ++++++.++++ +..+|++..+....+.++..+|+  +++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~--y~eAi   78 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK--YEEAI   78 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT---HHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC--HHHHH
Confidence            4458999999999999995  6788999999999999 59999999999 99999999999999999999999  99999


Q ss_pred             HHHHHH
Q 023284          141 QFTKKM  146 (284)
Q Consensus       141 ~~~~~a  146 (284)
                      +.++++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            998875

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.14  E-value=0.0011  Score=53.65  Aligned_cols=180  Identities=16%  Similarity=0.134  Sum_probs=144.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHH-H
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAIC--LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRW-V  127 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~--lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~-l  127 (284)
                      ............+...+++..+..++.  ..+....++...+.+...++ .+..++..+..++...+.+...+...+. +
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG-KYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            333344444445555788888888887  78999999999999999988 4899999999999999998888888887 8


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhCc---CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC-ChHHHHHHHHHHhcCCC
Q 023284          128 AEKLGTGAVNKELQFTKKMLSLDA---KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF-NNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       128 l~~l~~~~~~eel~~~~~aL~~dp---kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~-n~sAW~~r~~ll~~l~~  203 (284)
                      +...|.  +..++.++.+++..+|   ........++..+...+.+++++..+.+++...+. ...++...+......+.
T Consensus       140 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         140 LYELGD--YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHcCC--HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            888998  9999999999999887   35555666666677788999999999999999999 68888888887777664


Q ss_pred             CchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          204 LGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       204 ~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                             ++.++..+..++...|.....+......+.
T Consensus       218 -------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         218 -------YEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             -------HHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence                   367888999999999986556655555555

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=0.00013  Score=66.03  Aligned_cols=122  Identities=14%  Similarity=0.015  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC---cHHHHHH
Q 023284          100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG---WEDELDY  176 (284)
Q Consensus       100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~---~~eeL~~  176 (284)
                      .++-+.-++..|..||.|..-|.-.|-++..+|+  +..++..|.+++++.|+|...|.--+-++.....   -.++-..
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            5667777888999999999999999999999999  9999999999999999999999999888876543   4688899


Q ss_pred             HHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       177 ~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      +++++..||.|..+.++.++....-+++       ++++......+...|.+..
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~-------~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDY-------AEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccH-------HHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999998888884       7889999999998888654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.12  E-value=0.00012  Score=69.68  Aligned_cols=115  Identities=14%  Similarity=0.185  Sum_probs=99.6

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN  137 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~  137 (284)
                      ++...++.++|+++++++.+.+|+   +......++...+ .-.++++.+.+++..+|.++....-....+...++  ++
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~-~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--~~  251 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMN-EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--YE  251 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HH
Confidence            344456678999999999999987   4445566666666 46799999999999999999999988888888888  99


Q ss_pred             HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284          138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus       138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      .|+.+..+++++-|.++.+|.+.+-++..+|++++||...+
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            99999999999999999999999999999999999996665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.09  E-value=0.00042  Score=68.16  Aligned_cols=225  Identities=13%  Similarity=0.136  Sum_probs=141.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHH----H--------------Hhhh---------
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQII----E--------------TLHT---------   98 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L----~--------------~l~~---------   98 (284)
                      .|-..++..++.++.+.++.++|...+..+|..||+|+.-+.....++    .              .+..         
T Consensus        35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~  114 (517)
T PF12569_consen   35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR  114 (517)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh
Confidence            344566777888999999999999999999999999997776655555    1              0100         


Q ss_pred             ---------------------------------C----HH--HHHHHHHHHHH-------------------hCCCChHH
Q 023284           99 ---------------------------------D----LQ--DELAFVGRIAK-------------------SNSKNYQL  120 (284)
Q Consensus        99 ---------------------------------~----~~--~eL~~~~~~l~-------------------~~pkn~~a  120 (284)
                                                       +    +.  +-..++..++.                   ..|...-.
T Consensus       115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l  194 (517)
T PF12569_consen  115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL  194 (517)
T ss_pred             HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence                                             0    00  01111122211                   12334434


Q ss_pred             H--HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          121 W--HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       121 W--~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      |  ++....+..+|.  +++|+++++++|+..|.......-++-++.+.|++.+|.++.+.+-.+|+.|--.=+--.-.+
T Consensus       195 w~~~~lAqhyd~~g~--~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGD--YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            5  777888889999  999999999999999999999999999999999999999999999999999854322222222


Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHHhcC--CCC-----ccHHHHHHHH-----HccCCccCCCChhhHHHHHhhhhcc-cc
Q 023284          199 TRSPLLGGLIAMRDSEVNFTIEAILGN--PEN-----ESPWRYLRGL-----YKDDTESWINDPRMLLSVFESFEYQ-KQ  265 (284)
Q Consensus       199 ~~l~~~~~~~~~~~~el~~~~~~i~~~--P~n-----esaW~y~~~l-----l~~~~~~~~~~~~~~~~~~~~~~~~-~~  265 (284)
                      -+.++       .+++.+.+....+.+  |..     +..|+....-     ....+.++..+-.+..-|.+..+-| |+
T Consensus       273 LRa~~-------~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDF  345 (517)
T PF12569_consen  273 LRAGR-------IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDF  345 (517)
T ss_pred             HHCCC-------HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccH
Confidence            23343       245555443333222  221     3477544211     1123334444433333333322222 34


Q ss_pred             cccccc-CCCCcCCc
Q 023284          266 LCFCSE-HTFRSYLP  279 (284)
Q Consensus       266 ~~~~~~-~~~~~~~~  279 (284)
                      .+||-+ +++|+|+-
T Consensus       346 H~Yc~RK~t~r~Y~~  360 (517)
T PF12569_consen  346 HSYCLRKMTLRAYVD  360 (517)
T ss_pred             HHHHHhhccHHHHHH
Confidence            567765 56788763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.09  E-value=1.7e-05  Score=66.87  Aligned_cols=99  Identities=12%  Similarity=0.003  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc----------CcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCc
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG----------GWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLG  205 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~----------~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~  205 (284)
                      ++.+.+.++.....||.+..++++-|-+|..+.          .+++|++-++++|.++|....|....|.++..++.+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            566777777777778888887777777776653          3578888999999999999999999999988776542


Q ss_pred             ----hhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284          206 ----GLIAMRDSEVNFTIEAILGNPENESPWRY  234 (284)
Q Consensus       206 ----~~~~~~~~el~~~~~~i~~~P~nesaW~y  234 (284)
                          ++...++++.+||.++...+|+|+..+.-
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                24467899999999999999999875543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.99  E-value=2.5e-05  Score=54.77  Aligned_cols=57  Identities=16%  Similarity=0.154  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      +++|+..+++++..+|.|..++...+.++...|++++|.+.+++++..+|+|..++.
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            666667777777777777777776666666667777777777777777766644443

...

>PRK15331 chaperone protein SicA; Provisional

Probab=97.97  E-value=0.00022  Score=59.39  Aligned_cols=104  Identities=7%  Similarity=-0.084  Sum_probs=90.0

Q ss_pred             CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHh
Q 023284           79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWS  158 (284)
Q Consensus        79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~  158 (284)
                      .++..+.-+-.+--+...| ++++|..+|.-+...+|-|+.-|...+.+.+.++.  +++|+.+|..+..+++.|+..-+
T Consensus        33 s~~~le~iY~~Ay~~y~~G-k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~--y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQG-RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ--FQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcccCCCCccc
Confidence            3333444455555566667 59999999999999999999999999999999998  99999999999999999999999


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          159 YRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       159 ~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                      |-|.++..+|+.++|..++..+++ .|.
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~  136 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELVNE-RTE  136 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHh-Ccc
Confidence            999999999999999999999998 344

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00062  Score=66.47  Aligned_cols=119  Identities=14%  Similarity=0.217  Sum_probs=94.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHhCCCCHHHHHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW-HHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW-~hR~~ll~~l~~~~~~eel~  141 (284)
                      +..++|+....++|.+.|++.+|...+=.+|..+++ |+++|.+.++-....  -+... ++|..+..+++.  .++++.
T Consensus        26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk--~Dealk  100 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGALL--VINSFFFEKAYCEYRLNK--LDEALK  100 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchhh--hcchhhHHHHHHHHHccc--HHHHHH
Confidence            334899999999999999999999999889999885 999996544332211  11222 799999999999  999999


Q ss_pred             HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      +++   ..|+.+-..-.-++.++.++++|+++++.|...++-+-.+..
T Consensus       101 ~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen  101 TLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            998   555656667788899999999999999999988776655543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.91  E-value=0.0004  Score=55.21  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC---ChhHH
Q 023284           84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK---NYHAW  157 (284)
Q Consensus        84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk---N~~AW  157 (284)
                      .+++.+++++..+| ..++++.+|++++...+..   ..++...+..+..+|+  +++++..+++.+...|.   +....
T Consensus         2 ~~~~~~A~a~d~~G-~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~--~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    2 RALYELAWAHDSLG-REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR--YDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             chHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCccccHHHH
Confidence            46788899999999 4889999999999865444   5678888899999999  99999999999999888   77888


Q ss_pred             hHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284          158 SYRQWVLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       158 ~~r~~vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      .....++..+|+.+++++.+-.++..+
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l~~la~~  105 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLLEALAET  105 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            888889999999999999888877633

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.91  E-value=9.7e-05  Score=62.33  Aligned_cols=102  Identities=13%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT--DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFT  143 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~--~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~  143 (284)
                      +.|.+.++.....||.+..++++-|..|..|..  ...++.+                             .+++++.-+
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~-----------------------------miedAisK~   58 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK-----------------------------MIEDAISKF   58 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH-----------------------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH-----------------------------HHHHHHHHH
Confidence            445555566666666666666666666655532  0011111                             266677777


Q ss_pred             HHHHHhCcCChhHHhHHHHHHHHccC-----------cHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          144 KKMLSLDAKNYHAWSYRQWVLQALGG-----------WEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       144 ~~aL~~dpkN~~AW~~r~~vl~~l~~-----------~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      +.+|.++|+...|....|.++..++.           |++|.+||+++...+|+|...+.-...
T Consensus        59 eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   59 EEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            77788888887777777777766552           678899999999999999876554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.84  E-value=9.1e-05  Score=64.35  Aligned_cols=141  Identities=9%  Similarity=0.019  Sum_probs=107.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG  134 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~  134 (284)
                      |+.++.+.+.-.=|-.-++++|.++|+-+.++|+.|..+..-| +++.+++.|+.+++.||.+--+-.+||..+.--|+ 
T Consensus        71 RGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~-~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR-  148 (297)
T COG4785          71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-  148 (297)
T ss_pred             hcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-cchHHHHHhhhHhccCCcchHHHhccceeeeecCc-
Confidence            3334444444333445678899999999999999999998888 79999999999999999999999999999988888 


Q ss_pred             CHHHHHHHHHHHHHhCcCCh--hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          135 AVNKELQFTKKMLSLDAKNY--HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       135 ~~~eel~~~~~aL~~dpkN~--~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                       +.-+.+-+-+.-+-||++.  ..|.|.   ...--+..+|-.-..+--+...+....|+--++.|.++
T Consensus       149 -~~LAq~d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki  213 (297)
T COG4785         149 -YKLAQDDLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI  213 (297)
T ss_pred             -hHhhHHHHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc
Confidence             8888888888889999997  455552   22223456665555544455566778888777776555

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.81  E-value=0.0013  Score=53.40  Aligned_cols=127  Identities=9%  Similarity=-0.004  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHH
Q 023284           51 TMSYFRAVYYS--DERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWH  122 (284)
Q Consensus        51 a~~~~r~~~~~--~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~  122 (284)
                      +-..|..++..  .+....+-..++.++..+|+.   ..+....+.+....| ++++++..++.++...|..   ..+..
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g-~~~~A~~~l~~~~~~~~d~~l~~~a~l   89 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG-DYDEAKAALEKALANAPDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            33344444443  333356777789999999998   456666777777777 6999999999999987655   34666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLL  181 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l  181 (284)
                      ..+.++...|+  +++++..++. +.-.+-...++..+|.++...|++++|...|.++|
T Consensus        90 ~LA~~~~~~~~--~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   90 RLARILLQQGQ--YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHcCC--HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            67778888888  9999999866 34455556778888999999999999999998875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.002  Score=59.08  Aligned_cols=141  Identities=14%  Similarity=0.166  Sum_probs=101.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh---------------------------------------------
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH---------------------------------------------   97 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~---------------------------------------------   97 (284)
                      +.+++|++++-.+++.+|..+++....|.+..+-|                                             
T Consensus        49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~  128 (389)
T COG2956          49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED  128 (389)
T ss_pred             cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            45578888888888888888877777666665443                                             


Q ss_pred             --------------------------hCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023284           98 --------------------------TDLQDELAFVGRIAKSNSKNYQL---WHHRRWVAEKLGTGAVNKELQFTKKMLS  148 (284)
Q Consensus        98 --------------------------~~~~~eL~~~~~~l~~~pkn~~a---W~hR~~ll~~l~~~~~~eel~~~~~aL~  148 (284)
                                                +++++|++.-+++.++.++.+.+   -++--.....+..+..+.++..+.++++
T Consensus       129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq  208 (389)
T COG2956         129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ  208 (389)
T ss_pred             HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence                                      14677777777777777766643   2333333333443448889999999999


Q ss_pred             hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH-HHHHHHHHhcCCC
Q 023284          149 LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA-WNQRYFVVTRSPL  203 (284)
Q Consensus       149 ~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA-W~~r~~ll~~l~~  203 (284)
                      -||++..|=.-.|.+....|+++.|++.++++++.||...+- ..-...+..++|+
T Consensus       209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~  264 (389)
T COG2956         209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK  264 (389)
T ss_pred             hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999987643 2222333444554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.76  E-value=0.00014  Score=50.79  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh
Q 023284          100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH  155 (284)
Q Consensus       100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~  155 (284)
                      +++|+..+++++..+|++..++...+.++...|+  ++++...+++++..+|.|..
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--YDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---HHHHHHHHHCCHGGGTTHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCHHH
Confidence            5555555555555555555555555555555555  55555555555555555533

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00024  Score=66.62  Aligned_cols=110  Identities=16%  Similarity=0.048  Sum_probs=84.2

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---------------hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKN---------------YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN---------------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      +|..+.+.|+  +..|..-|++++..=...               .-+..+.+.+..+++.|.+|+.+++++|+++|.|.
T Consensus       214 ~Gn~~fK~gk--~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  214 RGNVLFKEGK--FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             hhhHHHhhch--HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            4555666666  666666666655421110               12466778888899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284          189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD  242 (284)
Q Consensus       189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~  242 (284)
                      -|.+-||.++..++.+       +.|...+.++++++|+|..+=.-+..+-.+.
T Consensus       292 KALyRrG~A~l~~~e~-------~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  292 KALYRRGQALLALGEY-------DLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             hHHHHHHHHHHhhccH-------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            9999999999888875       7788999999999999988766665555443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.75  E-value=0.002  Score=63.14  Aligned_cols=196  Identities=9%  Similarity=0.067  Sum_probs=138.1

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK  116 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk  116 (284)
                      -|......+.++.++.+.+...+|+.+|.++|.+        +|.-..+.+..+.++-..| .+.++-.++++++.+--+
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G-Kf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG-KFAEAEEYCERALEIYEK  315 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHH
Confidence            3444555666777788888888999999998864        5666678888888887777 477888888877765433


Q ss_pred             --------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc--------CChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284          117 --------NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA--------KNYHAWSYRQWVLQALGGWEDELDYCQML  180 (284)
Q Consensus       117 --------n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp--------kN~~AW~~r~~vl~~l~~~~eeL~~~~~~  180 (284)
                              -......-+.+....++  +++++.++.+++++.-        .=...-.+.+.++.++|++++|.+++.++
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a  393 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNE--YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA  393 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence                    23334455666677777  8888888888887532        22456677899999999999999999999


Q ss_pred             Hhcc--------CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHh-cCCCCccHHHHHHHHHccCCc
Q 023284          181 LGED--------IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAIL-GNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       181 l~~d--------p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~-~~P~nesaW~y~~~ll~~~~~  244 (284)
                      |.+.        +.-.-..++.+.....+.+++.+..++.+++... +..- -.|+-......+..++...++
T Consensus       394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~  465 (508)
T KOG1840|consen  394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGN  465 (508)
T ss_pred             HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHccc
Confidence            9874        3333445556666667777766667777777776 5432 233334477777777777765

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.70  E-value=0.0001  Score=67.91  Aligned_cols=100  Identities=14%  Similarity=0.073  Sum_probs=76.5

Q ss_pred             HHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284           88 FRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL  167 (284)
Q Consensus        88 ~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l  167 (284)
                      -||.-....| .|+++++||.+.+..+|-|.....+|...+.++.+  +.-+-..|+.++.+|-....|++.|+.+-..|
T Consensus       102 E~GN~yFKQg-Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~--FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  102 ERGNTYFKQG-KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS--FAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             Hhhhhhhhcc-chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH--HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4455555555 37888888888888888888888888877777776  77777778888888888888888888888888


Q ss_pred             cCcHHHHHHHHHHHhccCCChHH
Q 023284          168 GGWEDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       168 ~~~~eeL~~~~~~l~~dp~n~sA  190 (284)
                      |...+|-+-++.+|++.|.+...
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHHH
Confidence            88888888888888888876653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.66  E-value=0.00063  Score=62.21  Aligned_cols=158  Identities=9%  Similarity=0.061  Sum_probs=117.9

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284           61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL  140 (284)
Q Consensus        61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel  140 (284)
                      ..+..++||+++...     .+.++-.-+=.++..+++ .+-|-+-+..+-+.+..+.-+=.--.|+-...|.+.+.++.
T Consensus       114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R-~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~  187 (290)
T PF04733_consen  114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR-PDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF  187 (290)
T ss_dssp             CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT--HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence            345556777766543     556666666667777774 77788888888888877776666677887777876799999


Q ss_pred             HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284          141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE  220 (284)
Q Consensus       141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~  220 (284)
                      -+|+.+.+..+.+....+..+.+...+|+|++|.+.+.+++..+|+|..++.++..+-..+|+..+      ..-++..+
T Consensus       188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~------~~~~~l~q  261 (290)
T PF04733_consen  188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE------AAERYLSQ  261 (290)
T ss_dssp             HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH------HHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh------HHHHHHHH
Confidence            999999999899999999999999999999999999999999999999999999877777776421      12234555


Q ss_pred             HHhcCCCCcc
Q 023284          221 AILGNPENES  230 (284)
Q Consensus       221 ~i~~~P~nes  230 (284)
                      +-..+|+++-
T Consensus       262 L~~~~p~h~~  271 (290)
T PF04733_consen  262 LKQSNPNHPL  271 (290)
T ss_dssp             CHHHTTTSHH
T ss_pred             HHHhCCCChH
Confidence            5567888753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.65  E-value=4.1e-05  Score=46.93  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL  174 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL  174 (284)
                      |.++|+++|+|..+|++.|.++...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            55666666666666666666666666666554

>PRK15331 chaperone protein SicA; Provisional

Probab=97.65  E-value=0.0011  Score=55.40  Aligned_cols=104  Identities=7%  Similarity=-0.058  Sum_probs=88.3

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      ..++++.-+....+.--+-..++.++|..+|..+..++|-++.-|...+.|.+.++ .+++|+.+|..+..++++++..-
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k-~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK-QFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccCCCCcc
Confidence            34555555443333322334455589999999999999999999999999999999 59999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLS  148 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~  148 (284)
                      +|-|.++..+|+  ...|..++..+++
T Consensus       109 f~agqC~l~l~~--~~~A~~~f~~a~~  133 (165)
T PRK15331        109 FFTGQCQLLMRK--AAKARQCFELVNE  133 (165)
T ss_pred             chHHHHHHHhCC--HHHHHHHHHHHHh
Confidence            999999999999  9999999999999

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.64  E-value=0.0024  Score=62.55  Aligned_cols=172  Identities=12%  Similarity=0.093  Sum_probs=126.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh----
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS----  113 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~----  113 (284)
                      |....+..+....+...++.+.|...+..+|.+        .|.-.+.-..-+.++..+++ +.+++..|++++.+    
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k-~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK-YDEAVNLYEEALTIREEV  274 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHh
Confidence            444455555666667778889999999999998        77777888878888888884 77888888888763    


Q ss_pred             ----CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--------ChhHHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284          114 ----NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK--------NYHAWSYRQWVLQALGGWEDELDYCQMLL  181 (284)
Q Consensus       114 ----~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk--------N~~AW~~r~~vl~~l~~~~eeL~~~~~~l  181 (284)
                          +|.-..+...-+.++-..|+  +.++..+|++|+++--+        =....+.-+.+....+.+++|+.++.+++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GK--f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGK--FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence                45555556666777878888  99999999999986544        33456677788888999999999999888


Q ss_pred             hccC-----CC---hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284          182 GEDI-----FN---NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE  220 (284)
Q Consensus       182 ~~dp-----~n---~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~  220 (284)
                      ++.-     .|   .....+.+.++.+.|++.++..+++++|....+
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            8742     33   344566678888899975554445544444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.62  E-value=0.0016  Score=62.06  Aligned_cols=108  Identities=6%  Similarity=0.045  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      .++.++++++++.+.+|.   ++..-..++...++  -.+++..+.++|+.+|.++....-.+-.+...++++.|+....
T Consensus       184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk  258 (395)
T PF09295_consen  184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--EVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK  258 (395)
T ss_pred             cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            589999999999999986   44444455555566  7899999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHH
Q 023284          179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFT  218 (284)
Q Consensus       179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~  218 (284)
                      +++...|.+..+|.+.+.+...++.+       +.||...
T Consensus       259 ~av~lsP~~f~~W~~La~~Yi~~~d~-------e~ALlaL  291 (395)
T PF09295_consen  259 KAVELSPSEFETWYQLAECYIQLGDF-------ENALLAL  291 (395)
T ss_pred             HHHHhCchhHHHHHHHHHHHHhcCCH-------HHHHHHH
Confidence            99999999999999999999999885       5566443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.62  E-value=0.0018  Score=52.18  Aligned_cols=92  Identities=16%  Similarity=0.205  Sum_probs=63.3

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCC
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN----YQLWHHRRWVAEKLGT  133 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn----~~aW~hR~~ll~~l~~  133 (284)
                      .+...+.-+.||+.|.++|.+.|+...++|+|...+.-.| +.+++|+-+++++++.-.-    -+++..||.+++.+|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG-DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3444555577888888888888888888888888877666 4678888888877654322    2566667777777776


Q ss_pred             CCHHHHHHHHHHHHHhCcC
Q 023284          134 GAVNKELQFTKKMLSLDAK  152 (284)
Q Consensus       134 ~~~~eel~~~~~aL~~dpk  152 (284)
                        .+.+...|+.+-++-.+
T Consensus       131 --dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  131 --DDAARADFEAAAQLGSK  147 (175)
T ss_pred             --hHHHHHhHHHHHHhCCH
Confidence              66666666666655443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.55  E-value=0.0016  Score=52.48  Aligned_cols=92  Identities=15%  Similarity=0.146  Sum_probs=72.4

Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC----hhHHhHHHHHHH
Q 023284           90 RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN----YHAWSYRQWVLQ  165 (284)
Q Consensus        90 ~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN----~~AW~~r~~vl~  165 (284)
                      +..+..-| ++..+|+.|.++|..-|++..++++|...++--|+  .+++|+.+++++++-..-    -+++..||.+.+
T Consensus        50 ~valaE~g-~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   50 AIALAEAG-DLDGALELFGQALCLAPERASAYNNRAQALRLQGD--DEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHhcc-chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            44445555 68889999999999999999999999888888888  888999999998875322    377888888888


Q ss_pred             HccCcHHHHHHHHHHHhcc
Q 023284          166 ALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       166 ~l~~~~eeL~~~~~~l~~d  184 (284)
                      .+|+-+.|..-|+.+-++-
T Consensus       127 l~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HhCchHHHHHhHHHHHHhC
Confidence            8888888877777665543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.55  E-value=0.00018  Score=66.26  Aligned_cols=100  Identities=11%  Similarity=0.039  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      -.||.-+.+-|+  ++++++||.+.+..+|.|.-...+|+.++.++++|..|-.-|+.+|.+|-...-|+.-|+.+-..|
T Consensus       101 KE~GN~yFKQgK--y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  101 KERGNTYFKQGK--YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHhhhhhhhccc--hhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            357778888888  999999999999999999999999999999999999999999999999999999999999888778


Q ss_pred             CCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          202 PLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       202 ~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      |..       +++-+-++.+|++.|++..
T Consensus       179 g~~-------~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  179 GNN-------MEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             hhH-------HHHHHhHHHHHhhCcccHH
Confidence            763       6777888899999999754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.0059  Score=59.83  Aligned_cols=171  Identities=13%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH--H-HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT--V-WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~--a-W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      ..|+..+|....-..+-+.+.+++||    ++|+.++.+-.  . .+.|.-|..+++ ..+++|.+++   ..++...-+
T Consensus        41 ~~pdd~~a~~cKvValIq~~ky~~AL----k~ikk~~~~~~~~~~~fEKAYc~Yrln-k~Dealk~~~---~~~~~~~~l  112 (652)
T KOG2376|consen   41 IVPDDEDAIRCKVVALIQLDKYEDAL----KLIKKNGALLVINSFFFEKAYCEYRLN-KLDEALKTLK---GLDRLDDKL  112 (652)
T ss_pred             cCCCcHhhHhhhHhhhhhhhHHHHHH----HHHHhcchhhhcchhhHHHHHHHHHcc-cHHHHHHHHh---cccccchHH
Confidence            34666666555544444455556666    34444553111  1 145666666666 3666666665   333444444


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH------------------------------HhCcC-ChhHHhHHHHHHHHccC
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKML------------------------------SLDAK-NYHAWSYRQWVLQALGG  169 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL------------------------------~~dpk-N~~AW~~r~~vl~~l~~  169 (284)
                      -.-|+.++.++|+  ++++++.|..++                              ...|. .|.-.++.+.++-.-|.
T Consensus       113 l~L~AQvlYrl~~--ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk  190 (652)
T KOG2376|consen  113 LELRAQVLYRLER--YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK  190 (652)
T ss_pred             HHHHHHHHHHHhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence            5556666666665  555555544432                              23333 56677888888888889


Q ss_pred             cHHHHHHHHHHH-------hccCCC--------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccH
Q 023284          170 WEDELDYCQMLL-------GEDIFN--------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESP  231 (284)
Q Consensus       170 ~~eeL~~~~~~l-------~~dp~n--------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesa  231 (284)
                      |.+|++...+++       ..+-.|        +..-...++++..+|.-       +++...+...|..+|-|+..
T Consensus       191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt-------~ea~~iy~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT-------AEASSIYVDIIKRNPADEPS  260 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHhcCCCchH
Confidence            998988888772       222233        23445667888888874       67888889999999999863

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.50  E-value=0.0038  Score=50.71  Aligned_cols=114  Identities=15%  Similarity=0.022  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHhHHHHHHHHccCcHH
Q 023284           99 DLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWSYRQWVLQALGGWED  172 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~~r~~vl~~l~~~~e  172 (284)
                      +....-..++.++..+|+.   ..+....+-+....|+  +++++..++.++...|.+   .-+....+.++...|.+++
T Consensus        26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4556666789999999999   5566667777778888  999999999999987655   3477778899999999999


Q ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284          173 ELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       173 eL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      |+..++. +...+....++..+|-++...|+.       ++++..|.++|
T Consensus       104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~-------~~A~~~y~~Al  145 (145)
T PF09976_consen  104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDY-------DEARAAYQKAL  145 (145)
T ss_pred             HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCH-------HHHHHHHHHhC
Confidence            9999966 556667778888999999999985       66777777764

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.47  E-value=0.023  Score=60.65  Aligned_cols=150  Identities=11%  Similarity=0.063  Sum_probs=77.0

Q ss_pred             CCCCHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCCHHH
Q 023284           62 DERSSRSFQLTKEAICLN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--NSKNYQLWHHRRWVAEKLGTGAVNK  138 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--~pkn~~aW~hR~~ll~~l~~~~~~e  138 (284)
                      .+..++|+++++.+.+.+ +.+...|+..-..+...| ++++++++++.+...  .| +...|+.-...+.+.|+  +++
T Consensus       592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G-~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~--~ee  667 (1060)
T PLN03218        592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG-DWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD--LDK  667 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC--HHH
Confidence            334455555555555544 233444544444444444 355555555555543  22 23344444444445555  666


Q ss_pred             HHHHHHHHHHhC-cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc-CCChHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 023284          139 ELQFTKKMLSLD-AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED-IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN  216 (284)
Q Consensus       139 el~~~~~aL~~d-pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d-p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~  216 (284)
                      ++++++.+.+.. +-|...|+.....+.+.|++++|++.++++.+.. .-|...|+..-..+.+.++       ++++++
T Consensus       668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~-------~eeAle  740 (1060)
T PLN03218        668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ-------LPKALE  740 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC-------HHHHHH
Confidence            666666666543 2345556665666666666666666666665432 1234455555444444444       355666


Q ss_pred             HHHHHH
Q 023284          217 FTIEAI  222 (284)
Q Consensus       217 ~~~~~i  222 (284)
                      .+++..
T Consensus       741 lf~eM~  746 (1060)
T PLN03218        741 VLSEMK  746 (1060)
T ss_pred             HHHHHH
Confidence            666544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.41  E-value=0.00035  Score=42.16  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK  152 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk  152 (284)
                      +|+++|.+...+|+  +++++.+++++|+++|+
T Consensus         3 ~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGD--YEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCC--chHHHHHHHHHHHHCcC
Confidence            34444444444444  44444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.41  E-value=0.00021  Score=43.12  Aligned_cols=33  Identities=30%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                      .+|+++|.+...++++++|+.+++++|+++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            589999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.38  E-value=0.014  Score=59.40  Aligned_cols=129  Identities=12%  Similarity=0.076  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-CCChHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICL--NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN-SKNYQLWHHRR  125 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-pkn~~aW~hR~  125 (284)
                      ..+|+..-..+.+.+..++|++++.++...  .|+.. .++..-..+..+| .++++.+.+..+++.. +.+..+++...
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-t~~~ll~a~~~~g-~~~~a~~i~~~m~~~g~~~d~~~~~~Li  367 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-TFSIMIRIFSRLA-LLEHAKQAHAGLIRTGFPLDIVANTALV  367 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcc-chHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence            345666666666777778888888887653  44443 3444444555555 3666667666666654 44555555556


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284          126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      ..+.+.|+  +++|...++++.+   +|..+|+-....+.+-|+.++|++.++++++..
T Consensus       368 ~~y~k~G~--~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        368 DLYSKWGR--MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             HHHHHCCC--HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            66666666  7777777776654   466677777777777777777777777777643

>PLN03077 Protein ECB2; Provisional

Probab=97.37  E-value=0.024  Score=59.19  Aligned_cols=167  Identities=11%  Similarity=0.088  Sum_probs=111.4

Q ss_pred             hcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCCHH
Q 023284           60 YSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--NSKNYQLWHHRRWVAEKLGTGAVN  137 (284)
Q Consensus        60 ~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--~pkn~~aW~hR~~ll~~l~~~~~~  137 (284)
                      .+.+..++|+..++.+    +.+..+|+..-..+...| ..+++++.++++...  .|. ...+..--..+.+.|.  ++
T Consensus       535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G-~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~--v~  606 (857)
T PLN03077        535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHG-KGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM--VT  606 (857)
T ss_pred             HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh--HH
Confidence            3445567888887775    667888988877777778 588999999988764  343 3333333334556677  89


Q ss_pred             HHHHHHHHHHHhCcC--ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284          138 KELQFTKKMLSLDAK--NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEV  215 (284)
Q Consensus       138 eel~~~~~aL~~dpk--N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el  215 (284)
                      +++.+++.+.+..+-  |...++-...++.+.|++++|.+.++++ ...|+ ...|...-......+..       +.+-
T Consensus       607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~-------e~~e  677 (857)
T PLN03077        607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHV-------ELGE  677 (857)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCh-------HHHH
Confidence            999999998865433  3345566667788888999999998886 34443 45565443333222221       2233


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          216 NFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       216 ~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      ...+++++++|++.+.+..+..++...+
T Consensus       678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g  705 (857)
T PLN03077        678 LAAQHIFELDPNSVGYYILLCNLYADAG  705 (857)
T ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence            4567888999999988777666665544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.36  E-value=0.019  Score=58.58  Aligned_cols=177  Identities=13%  Similarity=0.045  Sum_probs=94.2

Q ss_pred             CCCCHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284           62 DERSSRSFQLTKEAICLN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL  140 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel  140 (284)
                      .+..++|.+++..+++.. +.+..+++..-..+...| ++++|.+.|+++..   +|..+|+.-...+.+.|+  .++++
T Consensus       338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~--~~~A~  411 (697)
T PLN03081        338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-RMEDARNVFDRMPR---KNLISWNALIAGYGNHGR--GTKAV  411 (697)
T ss_pred             ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC-CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC--HHHHH
Confidence            344466777777776655 444555555555555556 46677777666543   355666666666666666  66666


Q ss_pred             HHHHHHHHhCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh--HHHHHHHHHHhcCCCCchhh---------
Q 023284          141 QFTKKMLSLDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN--SAWNQRYFVVTRSPLLGGLI---------  208 (284)
Q Consensus       141 ~~~~~aL~~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~--sAW~~r~~ll~~l~~~~~~~---------  208 (284)
                      +.++++.+... -|...+......+.+.|..++++++++.+.+...-..  ..++-...++.+.|+.+++.         
T Consensus       412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~  491 (697)
T PLN03081        412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK  491 (697)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC
Confidence            66666665332 1333344334444555555666666655554321111  11221122222222211100         


Q ss_pred             ----------------hhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284          209 ----------------AMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       209 ----------------~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                                      ..++.+...+++++.+.|++.+.+..+..++.+.++
T Consensus       492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~  543 (697)
T PLN03081        492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR  543 (697)
T ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence                            002445566777888899888877777666666544

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.35  E-value=0.00016  Score=69.09  Aligned_cols=91  Identities=14%  Similarity=0.104  Sum_probs=79.4

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      .+..++.++.++|.++|.+...|..|.....+.+.  +..|+....++++.||+..-|++.||.+...++.+.+|+..++
T Consensus        19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~   96 (476)
T KOG0376|consen   19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--FGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE   96 (476)
T ss_pred             hHHHHHHHHHHHHhcCCcceeeechhhhhheeech--hhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence            57888999999999999999999999877777766  8889999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChHHH
Q 023284          179 MLLGEDIFNNSAW  191 (284)
Q Consensus       179 ~~l~~dp~n~sAW  191 (284)
                      ++....|++..+-
T Consensus        97 ~~~~l~Pnd~~~~  109 (476)
T KOG0376|consen   97 KVKKLAPNDPDAT  109 (476)
T ss_pred             HhhhcCcCcHHHH
Confidence            9999999887753

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.32  E-value=0.039  Score=50.83  Aligned_cols=153  Identities=10%  Similarity=0.123  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHH---HHHHHHHHhh-hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWH---FRRQIIETLH-TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~---~R~~~L~~l~-~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~  141 (284)
                      ++|++.-++..++.|+.+.+=.   |=-.....+. .+.+.++..+.++++.|||+..|=--.|-+....|+  ++.+++
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~--y~~AV~  235 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD--YQKAVE  235 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc--hHHHHH
Confidence            6788888888999888774432   2222222222 357889999999999999999998888888888898  999999


Q ss_pred             HHHHHHHhCcCChhHH-hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284          142 FTKKMLSLDAKNYHAW-SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE  220 (284)
Q Consensus       142 ~~~~aL~~dpkN~~AW-~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~  220 (284)
                      .++++++.||....-= --..-++.++|+.++.+.+..++++..++-.--..--..+...-|.        +.+-.+..+
T Consensus       236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~--------~~Aq~~l~~  307 (389)
T COG2956         236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGI--------DAAQAYLTR  307 (389)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh--------HHHHHHHHH
Confidence            9999999999876433 3345677889999999999999999988865443332333322222        445566667


Q ss_pred             HHhcCCCC
Q 023284          221 AILGNPEN  228 (284)
Q Consensus       221 ~i~~~P~n  228 (284)
                      -|...|.-
T Consensus       308 Ql~r~Pt~  315 (389)
T COG2956         308 QLRRKPTM  315 (389)
T ss_pred             HHhhCCcH
Confidence            77777763

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.0059  Score=54.71  Aligned_cols=130  Identities=15%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284           66 SRSFQLTKEAICLN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK----SNSKNYQLWHHRRWVAEKLGTGAVNKEL  140 (284)
Q Consensus        66 ~~aL~~~~~~L~ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~----~~pkn~~aW~hR~~ll~~l~~~~~~eel  140 (284)
                      .=.+.++.++++.+ |.....-...|.+-.+.| +.+.+-.+++.+-+    ++---...-.||...+-.+|.+.+.+|.
T Consensus       194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G-D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~  272 (366)
T KOG2796|consen  194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG-DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAH  272 (366)
T ss_pred             hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHH
Confidence            45778888999988 556666667788888888 67777777774433    3333334445665555566666699999


Q ss_pred             HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC---hHHHHHHHH
Q 023284          141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN---NSAWNQRYF  196 (284)
Q Consensus       141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n---~sAW~~r~~  196 (284)
                      .++++.+..||+|.-+-++++.++..+|+..+|+...+.++.++|+.   +|...+...
T Consensus       273 r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~t  331 (366)
T KOG2796|consen  273 RFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTT  331 (366)
T ss_pred             HHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999984   344444433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.29  E-value=0.034  Score=47.93  Aligned_cols=145  Identities=8%  Similarity=-0.034  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh---H
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH---A  156 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~---A  156 (284)
                      ..+.+..+......| ++.+++..+++++...|.+.   .+....+......|+  +.+++..+++.++.+|++..   |
T Consensus         5 ~~~lY~~a~~~~~~g-~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    5 AEALYQKALEALQQG-DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--YEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCcchhhH
Confidence            344555566555656 47777777777777666543   456666666666666  77777777777777776653   5


Q ss_pred             HhHHHHHHHHcc-----------CcHHHHHHHHHHHhccCCChHHHHHHHHHH---hcCCCCc---h----hhhhHHHHH
Q 023284          157 WSYRQWVLQALG-----------GWEDELDYCQMLLGEDIFNNSAWNQRYFVV---TRSPLLG---G----LIAMRDSEV  215 (284)
Q Consensus       157 W~~r~~vl~~l~-----------~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll---~~l~~~~---~----~~~~~~~el  215 (284)
                      .+.+|.+.....           ...+|+..+...|...|+..-+-.-+..+.   ..+....   .    ...-+..++
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~  161 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            666666543321           235788888888888888765543332221   1110000   0    001156788


Q ss_pred             HHHHHHHhcCCCCcc
Q 023284          216 NFTIEAILGNPENES  230 (284)
Q Consensus       216 ~~~~~~i~~~P~nes  230 (284)
                      ..++.+|+..|+-..
T Consensus       162 ~r~~~v~~~yp~t~~  176 (203)
T PF13525_consen  162 IRFQYVIENYPDTPA  176 (203)
T ss_dssp             HHHHHHHHHSTTSHH
T ss_pred             HHHHHHHHHCCCCch
Confidence            889999999998765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.25  E-value=0.0054  Score=56.11  Aligned_cols=139  Identities=10%  Similarity=0.006  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVGRIAKSNSKNYQLWHHRRWV  127 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~~~l~~~pkn~~aW~hR~~l  127 (284)
                      .+++...-.++.+.++.+-|-+.+..+-+.+.+..-.-..-.|+-...|. .++++.-+|+.+....|.+....+....+
T Consensus       131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~  210 (290)
T PF04733_consen  131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC  210 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            34444455566678888889999988888887766555555566656553 48899999999999989999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH-HHHHHHHHHHhccCCChH
Q 023284          128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE-DELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~-eeL~~~~~~l~~dp~n~s  189 (284)
                      ...+|+  +++|.+.+..+++.+|+|..+..++.-+-..+|+-. ..-+++.++-..+|.+.-
T Consensus       211 ~l~~~~--~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  211 HLQLGH--YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHCT---HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHhCC--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            999999  999999999999999999999999999889999884 445677777778888643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.22  E-value=0.00035  Score=66.75  Aligned_cols=124  Identities=12%  Similarity=0.005  Sum_probs=97.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF  142 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~  142 (284)
                      ...+.|+.++.+||.++|.++..+..|.......+ ++..||.-+.++++.+|+..-+++.||.....+++  +.+++..
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e-~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~--~~~A~~~   94 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVE-SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE--FKKALLD   94 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhheeec-hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH--HHHHHHH
Confidence            44578999999999999999999999987777777 68999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      +.+...+.|....+=---.-+= .+    -..+-+++++-.++++.+.-.+.
T Consensus        95 l~~~~~l~Pnd~~~~r~~~Ec~-~~----vs~~~fe~ai~~~~~d~~s~~~~  141 (476)
T KOG0376|consen   95 LEKVKKLAPNDPDATRKIDECN-KI----VSEEKFEKAILTPEGDKKSVVEM  141 (476)
T ss_pred             HHHhhhcCcCcHHHHHHHHHHH-HH----HHHHhhhhcccCCccCCcccccc
Confidence            9999999999876532211110 00    11233566667777666554444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.21  E-value=0.00041  Score=42.41  Aligned_cols=27  Identities=11%  Similarity=0.099  Sum_probs=14.0

Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCC
Q 023284          107 VGRIAKSNSKNYQLWHHRRWVAEKLGT  133 (284)
Q Consensus       107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~  133 (284)
                      |+++|+++|+|+.+|+..+.++...|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~   28 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGD   28 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence            345555555555555555555555554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.19  E-value=0.00063  Score=48.96  Aligned_cols=63  Identities=21%  Similarity=0.312  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---C----cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSL---D----AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~---d----pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~  183 (284)
                      .++++.+.++..+|+  ++++++++++++++   .    |.-..++++.|.++..+|++++|++++++++++
T Consensus         6 ~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGR--YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            445556666666666  66666666666643   1    112345566677777777777777777777664

...

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.18  E-value=0.15  Score=54.55  Aligned_cols=168  Identities=8%  Similarity=-0.035  Sum_probs=92.6

Q ss_pred             cCCCCHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCCHHH
Q 023284           61 SDERSSRSFQLTKEAICLNPG-NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS-KNYQLWHHRRWVAEKLGTGAVNK  138 (284)
Q Consensus        61 ~~~~s~~aL~~~~~~L~lnP~-~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p-kn~~aW~hR~~ll~~l~~~~~~e  138 (284)
                      +.+..++|+.+++.+.+.... +..+|+..-..+-..| +++++++.++.+..... .|...|+.-...+.+.|+  +++
T Consensus       449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~--~ee  525 (1060)
T PLN03218        449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ--VAK  525 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC--HHH
Confidence            344456677777776664432 3444555444455555 46677777777665543 266666666666666666  777


Q ss_pred             HHHHHHHHHHhC-cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc----cCCChHHHHHHHHHHhcCCCCchhhhhHHH
Q 023284          139 ELQFTKKMLSLD-AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE----DIFNNSAWNQRYFVVTRSPLLGGLIAMRDS  213 (284)
Q Consensus       139 el~~~~~aL~~d-pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~----dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~  213 (284)
                      ++.+++.+.+.. .-|...|+.....+.+.|.+++|++.++++...    .|+ ...|+..-..+.+.+..       ++
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~l-------de  597 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQV-------DR  597 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCH-------HH
Confidence            777777666543 234556666666666666777777777766542    232 33444333334444442       44


Q ss_pred             HHHHHHHHHhcC-CCCccHHHHHHHHH
Q 023284          214 EVNFTIEAILGN-PENESPWRYLRGLY  239 (284)
Q Consensus       214 el~~~~~~i~~~-P~nesaW~y~~~ll  239 (284)
                      +++.+++..+.. +.+...|+-+...+
T Consensus       598 A~elf~~M~e~gi~p~~~tynsLI~ay  624 (1060)
T PLN03218        598 AKEVYQMIHEYNIKGTPEVYTIAVNSC  624 (1060)
T ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence            555555555443 22334554444333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.17  E-value=0.00076  Score=40.38  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=16.1

Q ss_pred             HHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                      +|+++|.++...|++++|+++++++++++|+|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            44555555555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.13  E-value=0.064  Score=47.73  Aligned_cols=146  Identities=9%  Similarity=-0.057  Sum_probs=98.4

Q ss_pred             cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---h
Q 023284           82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW---HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---H  155 (284)
Q Consensus        82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW---~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~  155 (284)
                      ..+.++..+.-...-| +++++++.++.++..+|....+=   ...+.+..+.++  +++++..+++.++.+|.+.   .
T Consensus        31 ~~~~~Y~~A~~~~~~g-~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~--y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         31 PPSEIYATAQQKLQDG-NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--LPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCcCCCchHH
Confidence            5666777777776666 68999999999999999886554   555667777777  9999999999999888776   4


Q ss_pred             HHhHHHHHHHHcc-----C-------------cHHHHHHHHHHHhccCCChHHHHHHHHHH---hcCCCCc-h------h
Q 023284          156 AWSYRQWVLQALG-----G-------------WEDELDYCQMLLGEDIFNNSAWNQRYFVV---TRSPLLG-G------L  207 (284)
Q Consensus       156 AW~~r~~vl~~l~-----~-------------~~eeL~~~~~~l~~dp~n~sAW~~r~~ll---~~l~~~~-~------~  207 (284)
                      |.+-+|.+...++     .             -.+|+..+++.|+..|+...+---+..+.   .++.+.. .      .
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~  187 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK  187 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666533332     0             14688899999999998765544333221   1111100 0      0


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCcc
Q 023284          208 IAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       208 ~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      ..-+..++..++.+|...|+-..
T Consensus       188 ~~~y~AA~~r~~~v~~~Yp~t~~  210 (243)
T PRK10866        188 RGAYVAVVNRVEQMLRDYPDTQA  210 (243)
T ss_pred             cCchHHHHHHHHHHHHHCCCCch
Confidence            01145678888889988888765

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.13  E-value=0.0011  Score=42.63  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=23.1

Q ss_pred             HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284          156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY  195 (284)
Q Consensus       156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~  195 (284)
                      +|...+.++..+|++++|.+.++++|+.+|+|..+|...+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4555555555666666666666666666666666555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.12  E-value=0.014  Score=51.99  Aligned_cols=113  Identities=4%  Similarity=-0.191  Sum_probs=86.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH---hHHHHHHHHccCcHHHHHHHHHHHhccCCCh---H
Q 023284          116 KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW---SYRQWVLQALGGWEDELDYCQMLLGEDIFNN---S  189 (284)
Q Consensus       116 kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW---~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~---s  189 (284)
                      .....++..+.....-|+  ++++++.+++++..+|....+=   ...+.+..+.+++++|+..+++.|+.+|++.   .
T Consensus        30 ~~~~~~Y~~A~~~~~~g~--y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGN--WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            366777778888877788  9999999999999999887554   6677888999999999999999999999886   4


Q ss_pred             HHHHHHHHHhcCC-----------CCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          190 AWNQRYFVVTRSP-----------LLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       190 AW~~r~~ll~~l~-----------~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      |++.+|.+...++           ..+........+++.+.+.|+..|+.+-
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y  159 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY  159 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence            4666665533232           1111112246788999999999998764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.10  E-value=0.0016  Score=38.97  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN  153 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN  153 (284)
                      .+|++.|.++...|+  +++++.+++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~--~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGN--YEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCC--HHHHHHHHHHHHHHCcCC
Confidence            456666777777766  777777777777777665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03077 Protein ECB2; Provisional

Probab=97.08  E-value=0.054  Score=56.57  Aligned_cols=127  Identities=10%  Similarity=0.070  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-ChhHHhHHHHHHHHccCcHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK-NYHAWSYRQWVLQALGGWEDELDYC  177 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk-N~~AW~~r~~vl~~l~~~~eeL~~~  177 (284)
                      .+++++..++..    +++..+|+.....+.+.|+  .+++++.++++.+...+ |...+...-..+.+.|+++++++++
T Consensus       539 ~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~--~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f  612 (857)
T PLN03077        539 RMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK--GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF  612 (857)
T ss_pred             CHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence            366776666654    6778888888777777787  88888888888775432 4444555455566778888888888


Q ss_pred             HHHHhccCCChHH--HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          178 QMLLGEDIFNNSA--WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       178 ~~~l~~dp~n~sA--W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                      +.+.+.+.-....  ++....++.+.|+       ++++.+.+++. ...|+ ...|.-+...+.
T Consensus       613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~-------~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~  668 (857)
T PLN03077        613 HSMEEKYSITPNLKHYACVVDLLGRAGK-------LTEAYNFINKM-PITPD-PAVWGALLNACR  668 (857)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHhCCC-------HHHHHHHHHHC-CCCCC-HHHHHHHHHHHH
Confidence            8888554433333  3333344445554       36677776653 35555 567766655443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.05  E-value=0.04  Score=47.48  Aligned_cols=147  Identities=10%  Similarity=-0.040  Sum_probs=101.0

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHH
Q 023284           56 RAVYYSDERSSRSFQLTKEAICLNPGNY---TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ---LWHHRRWVAE  129 (284)
Q Consensus        56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~---~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~---aW~hR~~ll~  129 (284)
                      +......+...+|+..++.++...|...   .|....+.+....| ++.+++..++..+..+|++..   |.+.+|....
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            3334445666899999999999988754   77888888888888 699999999999999998874   7888888765


Q ss_pred             HhCC---------CCHHHHHHHHHHHHHhCcCChhHHhHHHH-----------------HHHHccCcHHHHHHHHHHHhc
Q 023284          130 KLGT---------GAVNKELQFTKKMLSLDAKNYHAWSYRQW-----------------VLQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       130 ~l~~---------~~~~eel~~~~~aL~~dpkN~~AW~~r~~-----------------vl~~l~~~~eeL~~~~~~l~~  183 (284)
                      ....         ....+++..+..+++..|+...+---+..                 ...+.|.+..|+..++.+|+.
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            4421         12567899999999999998877533222                 112234678889999999999


Q ss_pred             cCCChHH---HHHHHHHHhcCCC
Q 023284          184 DIFNNSA---WNQRYFVVTRSPL  203 (284)
Q Consensus       184 dp~n~sA---W~~r~~ll~~l~~  203 (284)
                      .|+-..+   +........++|.
T Consensus       171 yp~t~~~~~al~~l~~~y~~l~~  193 (203)
T PF13525_consen  171 YPDTPAAEEALARLAEAYYKLGL  193 (203)
T ss_dssp             STTSHHHHHHHHHHHHHHHHTT-
T ss_pred             CCCCchHHHHHHHHHHHHHHhCC
Confidence            9887654   3333333344443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.95  E-value=0.0023  Score=41.13  Aligned_cols=39  Identities=21%  Similarity=0.423  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR  160 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r  160 (284)
                      +|...+.++..+|+  ++++++.++++++.+|+|..+|...
T Consensus         3 ~~~~la~~~~~~G~--~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQ--PDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            45555556666665  6666666666666666666666554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.83  E-value=0.0041  Score=44.62  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSN-------SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-------pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      ..+++..+.++..+| +++++++++++++.+.       |.-..+++..|.++..+|+  ++++++++++++++
T Consensus         5 a~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD--YEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh
Confidence            445555666666655 3666666666655431       1123445556666666666  66666666666655

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.67  E-value=0.055  Score=49.09  Aligned_cols=126  Identities=14%  Similarity=-0.007  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284           65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK  144 (284)
Q Consensus        65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~  144 (284)
                      .++|-..+.++++..+-++.+|..-..+=..++.+.+.|.+.|+.+++..|++...|.+-.-.+..+++  .+++-..++
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d--~~~aR~lfe   94 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND--INNARALFE   94 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence            478889999999777778999886666655656677779999999999999999999998888888988  999999999


Q ss_pred             HHHHhCcCCh---hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          145 KMLSLDAKNY---HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       145 ~aL~~dpkN~---~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      +++..-|...   ..|..-.-.=.+.|+.+.......++.+.-|.+.+...
T Consensus        95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen   95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            9999877777   45555444556788888889999999999999776654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.0076  Score=53.21  Aligned_cols=88  Identities=11%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN  137 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~  137 (284)
                      .+...++...|+.+|.++|.+||....-|.+|..+-..+. .++....-+.++++++|...-+-+.-|..+.....  +.
T Consensus        19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~--~~   95 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG--YD   95 (284)
T ss_pred             cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc--cc
Confidence            3344566789999999999999999999999999988887 58899999999999999999999988877777766  89


Q ss_pred             HHHHHHHHHHH
Q 023284          138 KELQFTKKMLS  148 (284)
Q Consensus       138 eel~~~~~aL~  148 (284)
                      +++..+.++..
T Consensus        96 eaI~~Lqra~s  106 (284)
T KOG4642|consen   96 EAIKVLQRAYS  106 (284)
T ss_pred             HHHHHHHHHHH
Confidence            99999988843

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.65  E-value=0.083  Score=43.13  Aligned_cols=110  Identities=9%  Similarity=-0.054  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH---hHHHHHHHHccCcHHHHHHHHHHHhccCCCh---HHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW---SYRQWVLQALGGWEDELDYCQMLLGEDIFNN---SAWN  192 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW---~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~---sAW~  192 (284)
                      ..++..+.-...-|+  +.++++.++.+....|-.-.+=   .-.+.+..+-+.+++|++.+++.|++||.+.   -|++
T Consensus        11 ~~ly~~a~~~l~~~~--Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen   11 QELYQEAQEALQKGN--YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             HHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            334444444444455  6666666666666666554332   2233444555666677777777777766665   3455


Q ss_pred             HHHHHHhcCC--------CCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          193 QRYFVVTRSP--------LLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       193 ~r~~ll~~l~--------~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      .+|.+-....        +.+....-...++..+.++|...|+.+-
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            5554433321        1111111246688889999999999764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.01  Score=52.40  Aligned_cols=83  Identities=16%  Similarity=0.134  Sum_probs=75.7

Q ss_pred             hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHH
Q 023284           98 TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYC  177 (284)
Q Consensus        98 ~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~  177 (284)
                      +.|..++.++.++|.++|....-|.+|.....++..  ++.....|.++++++|+-.-+-+..|..+.....+.+++...
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~--~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH--WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            357899999999999999999999999999988887  999999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 023284          178 QMLLG  182 (284)
Q Consensus       178 ~~~l~  182 (284)
                      .++..
T Consensus       102 qra~s  106 (284)
T KOG4642|consen  102 QRAYS  106 (284)
T ss_pred             HHHHH
Confidence            98843

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.61  E-value=0.11  Score=42.48  Aligned_cols=105  Identities=9%  Similarity=-0.022  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---hH
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---HA  156 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~A  156 (284)
                      ...++..+.-...-| +++++.+.++.+....|-..   +|-.-.+.+...-++  ++++++.+++.++++|.+.   .|
T Consensus        10 ~~~ly~~a~~~l~~~-~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~--y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen   10 PQELYQEAQEALQKG-NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD--YEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCCCccHH
Confidence            345556666666656 58888888888888877654   334444555555666  8888888888888888776   56


Q ss_pred             HhHHHHHHHHccC---------------cHHHHHHHHHHHhccCCChHH
Q 023284          157 WSYRQWVLQALGG---------------WEDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       157 W~~r~~vl~~l~~---------------~~eeL~~~~~~l~~dp~n~sA  190 (284)
                      ++.+|........               ...|+..+.++|...|+..-|
T Consensus        87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            7778776655432               357788888888888876543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.61  E-value=0.43  Score=45.02  Aligned_cols=178  Identities=11%  Similarity=0.026  Sum_probs=110.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC---C---CChHHHHHHHHHH
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN---S---KNYQLWHHRRWVA  128 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~---p---kn~~aW~hR~~ll  128 (284)
                      +..++...+..+-|..-.+.++..+|.+.++..-..++...+| ++.+.+..+.++-+..   +   ..++-|..++.+-
T Consensus       159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g-~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~  237 (400)
T COG3071         159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG-AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ  237 (400)
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc-cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence            3334445555678888888889999999988888888888887 4666666665554322   1   1122233333222


Q ss_pred             HHhCC----------------------------------CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284          129 EKLGT----------------------------------GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL  174 (284)
Q Consensus       129 ~~l~~----------------------------------~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL  174 (284)
                      +....                                  ...++|.+.+..+|+..-..-   -.+..-.-..++.+.=+
T Consensus       238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~  314 (400)
T COG3071         238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLI  314 (400)
T ss_pred             HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHH
Confidence            21110                                  115566666666666543322   11111112234566677


Q ss_pred             HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284          175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                      ...++++..+|.+...+...|.+..+-+.       +.++-++++.+|...|+ .+.|.++...+.+.++
T Consensus       315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~-------w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~  376 (400)
T COG3071         315 KAAEKWLKQHPEDPLLLSTLGRLALKNKL-------WGKASEALEAALKLRPS-ASDYAELADALDQLGE  376 (400)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHhhH-------HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence            88888888888888888888877665543       45666777788888887 5567788888887765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.56  E-value=0.0041  Score=37.22  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=18.3

Q ss_pred             hHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284          155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp  185 (284)
                      .+|+.+|.++..+|++++|++++.++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455555566666666666666666666655

...

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.51  E-value=0.074  Score=54.55  Aligned_cols=134  Identities=11%  Similarity=0.165  Sum_probs=100.6

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      ...+++.-++++++.+|+..-|=..++.++.++|+  .++++.+.+..=..-+.+-....-...+++.++.++++..+|+
T Consensus        24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk--~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye  101 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK--GDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE  101 (932)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC--chhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            47789999999999999999999999999999999  8999988877777777788888888899999999999999999


Q ss_pred             HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHccC
Q 023284          179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES-PWRYLRGLYKDD  242 (284)
Q Consensus       179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes-aW~y~~~ll~~~  242 (284)
                      +++..+|+ ..-..+.+.+.-+-+.+..   .-+.+++.+    +..|+++- -|+-...++...
T Consensus       102 ~~~~~~P~-eell~~lFmayvR~~~yk~---qQkaa~~Ly----K~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen  102 RANQKYPS-EELLYHLFMAYVREKSYKK---QQKAALQLY----KNFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             HHHhhCCc-HHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HhCCcccchHHHHHHHHHHhc
Confidence            99999999 6555555544433333211   112234433    35677764 776666666654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.40  E-value=0.0025  Score=58.77  Aligned_cols=86  Identities=16%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF  142 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~  142 (284)
                      +..+.|++.++.+|.+||.....+..|+.++..|++ ...++.-|+.++.+||...+-+-.|+..-..+|.  ++++-..
T Consensus       128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k-p~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~e~aa~d  204 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK-PNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--WEEAAHD  204 (377)
T ss_pred             cchhhhhcccccccccCCchhhhcccccceeeeccC-CchhhhhhhhhhccCcccccccchhhHHHHHhhc--hHHHHHH
Confidence            334677777777777777777777777777777774 5677777777777777777777777777777777  7777777


Q ss_pred             HHHHHHhCc
Q 023284          143 TKKMLSLDA  151 (284)
Q Consensus       143 ~~~aL~~dp  151 (284)
                      +..++++|-
T Consensus       205 l~~a~kld~  213 (377)
T KOG1308|consen  205 LALACKLDY  213 (377)
T ss_pred             HHHHHhccc
Confidence            777776653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.31  E-value=0.2  Score=48.66  Aligned_cols=162  Identities=16%  Similarity=0.167  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHH-----HHHHhhhCHHHHHHHHHHHHHhCC------CChHHHHHH----------
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQ-----IIETLHTDLQDELAFVGRIAKSNS------KNYQLWHHR----------  124 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~-----~L~~l~~~~~~eL~~~~~~l~~~p------kn~~aW~hR----------  124 (284)
                      ++-+++..+||.++|++.+||.....     +.+... -++++++.-+..+..+.      ..+..|..|          
T Consensus       185 ~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~-l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~Kr  263 (539)
T PF04184_consen  185 QARIKAAKEALEINPDCADAYILLAEEEASTIVEAEE-LLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKR  263 (539)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHH-HHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHH
Confidence            46788999999999999999976544     122222 24445554444444332      112233222          


Q ss_pred             --HHHHHHhCCCCHHHHHHHHHHHHHhCcC--ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          125 --RWVAEKLGTGAVNKELQFTKKMLSLDAK--NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       125 --~~ll~~l~~~~~~eel~~~~~aL~~dpk--N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                        +.++.++|+  ..+|++.+..+++.+|.  |...-.+..-++-.++.+.++-....+-=++.--...+|+|-..+|+-
T Consensus       264 RLAmCarklGr--~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka  341 (539)
T PF04184_consen  264 RLAMCARKLGR--LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA  341 (539)
T ss_pred             HHHHHHHHhCC--hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence              345577898  99999999999998885  233333344445556677766555555322222345678887766542


Q ss_pred             C--C-CC-------chhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          201 S--P-LL-------GGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       201 l--~-~~-------~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      -  + +.       ++...--..+++.+.+|++.||+-+.
T Consensus       342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            1  1 00       01111124578899999999999765

The molecular function of this protein is uncertain.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.25  E-value=0.011  Score=35.33  Aligned_cols=32  Identities=22%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK  152 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk  152 (284)
                      .+|..+|.++..+|+  +++++.++.++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~--~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGD--YEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence            456666666666666  66666666666666664

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.91  Score=40.95  Aligned_cols=138  Identities=9%  Similarity=0.053  Sum_probs=91.2

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284           61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL  140 (284)
Q Consensus        61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel  140 (284)
                      .++.+++|+..+.....+     ++---.-.|+.++.+ .+-+.+-+.++..++-.-.-.-.--.|+-.--|.+.+.++.
T Consensus       120 ~~~~~deAl~~~~~~~~l-----E~~Al~VqI~lk~~r-~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAf  193 (299)
T KOG3081|consen  120 HDGDFDEALKALHLGENL-----EAAALNVQILLKMHR-FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAF  193 (299)
T ss_pred             cCCChHHHHHHHhccchH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHH
Confidence            345556666666552222     222222223333332 33344444444444433222222233444444544588999


Q ss_pred             HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      -.|..+-++-|.+.-.-++..-+-..+++|++|......+|..++++..+..+.-.+-..+|..
T Consensus       194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999987776666664

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.095  Score=48.46  Aligned_cols=112  Identities=16%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             cHHHHHHHH--HHHHHhhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh
Q 023284           82 NYTVWHFRR--QIIETLHTDLQDELAFVGRIAKSNSK----NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH  155 (284)
Q Consensus        82 ~~~aW~~R~--~~L~~l~~~~~~eL~~~~~~l~~~pk----n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~  155 (284)
                      +-.|-+||.  .-...-. .|..|..+|.+.|...-.    |...+++|..+-..+|+  +..+|..|.+++.++|.+.-
T Consensus        78 ~E~Aen~KeeGN~~fK~K-ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--yRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEK-RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--YRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             HHHHHHHHHHhHHHHHhh-hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHhcCcchhh
Confidence            345666663  3333333 488888888888876543    34557788888888888  99999999999999999999


Q ss_pred             HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      |...-+-++..|.++.+++.+++..+.++..+-.+-..+..
T Consensus       155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l  195 (390)
T KOG0551|consen  155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNL  195 (390)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Confidence            99888889999999999999999999888888877665533

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.97  E-value=0.47  Score=43.90  Aligned_cols=146  Identities=14%  Similarity=0.066  Sum_probs=99.3

Q ss_pred             eecChhHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDE------------RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGR  109 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~------------~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~  109 (284)
                      +.=+|+..++|--+-.+..+.-            ..+.-|.++++||+.||++...|..+-.+...+. +-++-.+-.++
T Consensus        12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l~~~we~   90 (321)
T PF08424_consen   12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKLAKKWEE   90 (321)
T ss_pred             HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence            4457888999887765544321            1257789999999999999999988777777766 46677788899


Q ss_pred             HHHhCCCChHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHh----CcCC--------------hhHHhHHHHHHHHccCc
Q 023284          110 IAKSNSKNYQLWHHRR-WVAEKLGTGAVNKELQFTKKMLSL----DAKN--------------YHAWSYRQWVLQALGGW  170 (284)
Q Consensus       110 ~l~~~pkn~~aW~hR~-~ll~~l~~~~~~eel~~~~~aL~~----dpkN--------------~~AW~~r~~vl~~l~~~  170 (284)
                      ++..+|.++..|...- +.....+.-.+.+-+..|.++|..    ....              ..........+.+.|-.
T Consensus        91 ~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~  170 (321)
T PF08424_consen   91 LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT  170 (321)
T ss_pred             HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence            9999999999997653 333334332245555555555542    1111              11223333445677888


Q ss_pred             HHHHHHHHHHHhccCCCh
Q 023284          171 EDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       171 ~eeL~~~~~~l~~dp~n~  188 (284)
                      +.|+..++-.|+.+..-.
T Consensus       171 E~Ava~~Qa~lE~n~~~P  188 (321)
T PF08424_consen  171 ERAVALWQALLEFNFFRP  188 (321)
T ss_pred             HHHHHHHHHHHHHHcCCc
Confidence            999999999999986433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=0.23  Score=44.80  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=109.2

Q ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHhCcCChhHHhHHHHHHHHc--cCcH
Q 023284           99 DLQDELAFVGRIAKSN-SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM----LSLDAKNYHAWSYRQWVLQAL--GGWE  171 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~-pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a----L~~dpkN~~AW~~r~~vl~~l--~~~~  171 (284)
                      .+.=.++.+.+++..+ |..++.-.-.|-+-.+.|+  .+.+-..++++    =.++.--..--.+|...+-.+  +++.
T Consensus       192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD--~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a  269 (366)
T KOG2796|consen  192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD--IKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA  269 (366)
T ss_pred             hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence            4667888999999998 5666666666777778887  55555555522    233333333344444444444  4789


Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC---ccHHHHHHHHHccCCccCCC
Q 023284          172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN---ESPWRYLRGLYKDDTESWIN  248 (284)
Q Consensus       172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n---esaW~y~~~ll~~~~~~~~~  248 (284)
                      +|...+++.+..||+|.-|-|+++.++.-+++.       ..++...+.++...|..   +|.-..++.+++-.=..-.+
T Consensus       270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l-------~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~  342 (366)
T KOG2796|consen  270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKL-------KDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQ  342 (366)
T ss_pred             HHHHHHhhccccCCCchhhhchHHHHHHHHHHH-------HHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999888874       56788888899999974   56666666666532111222


Q ss_pred             ChhhHHHHHhhhhcccccccc
Q 023284          249 DPRMLLSVFESFEYQKQLCFC  269 (284)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~  269 (284)
                      ...++.-....-+++++-+=|
T Consensus       343 ~k~~l~~~ia~~~~d~f~~~c  363 (366)
T KOG2796|consen  343 KKQALLEAVAGKEGDSFNTQC  363 (366)
T ss_pred             HHHHHHHHHhccCCCcccchh
Confidence            334454444455666655544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=0.72  Score=43.30  Aligned_cols=61  Identities=5%  Similarity=-0.051  Sum_probs=31.1

Q ss_pred             cHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284          170 WEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG  237 (284)
Q Consensus       170 ~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~  237 (284)
                      |++|++.|.+.+..+|.....=.|.+.+..++.-++       -.-+....-++..|+..-+-|.+..
T Consensus       167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd-------vsqevl~vYL~q~pdStiA~NLkac  227 (557)
T KOG3785|consen  167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD-------VSQEVLKVYLRQFPDSTIAKNLKAC  227 (557)
T ss_pred             HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh-------hHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            466666666666666665554445555555554331       1122233344455655555444443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.1  Score=46.55  Aligned_cols=62  Identities=18%  Similarity=-0.002  Sum_probs=52.7

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284          128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW  191 (284)
Q Consensus       128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW  191 (284)
                      +...|.  +-+.++-|+.+|..+|.|..|.+.|+-+-...-+.++|-+-+.++|+.||.-.|+-
T Consensus       240 ~L~~~e--~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  240 LLKKEE--YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HhhHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            334455  88899999999999999999999999887766667889999999999999887764

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.85  E-value=0.96  Score=41.88  Aligned_cols=112  Identities=15%  Similarity=0.132  Sum_probs=82.4

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhh-----------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 023284           70 QLTKEAICLNPGNYTVWHFRRQIIETLH-----------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNK  138 (284)
Q Consensus        70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~-----------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~e  138 (284)
                      .-+++.++-+|.+..+|.---..-..+.           ...+..|..+++||+.||.+...|...--+..++..  .++
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~--~~~   83 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD--SEK   83 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--HHH
Confidence            3467788999999999975544433321           125788999999999999999999888777777765  666


Q ss_pred             HHHHHHHHHHhCcCChhHHhHHH-HHHHHccCc--HHHHHHHHHHHhc
Q 023284          139 ELQFTKKMLSLDAKNYHAWSYRQ-WVLQALGGW--EDELDYCQMLLGE  183 (284)
Q Consensus       139 el~~~~~aL~~dpkN~~AW~~r~-~vl~~l~~~--~eeL~~~~~~l~~  183 (284)
                      -.+-.++++..+|.++..|-..- +....+..+  ++-+..|.++|..
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            77889999999999999997653 444445543  4445555555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.73  E-value=0.82  Score=44.41  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284           65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK  144 (284)
Q Consensus        65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~  144 (284)
                      ..+|-..++.||..+..+.+.|..-..+=.... ....|-+..++++.+-|.--+.|+--..+-..||+  ...+-..++
T Consensus        89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN--i~gaRqife  165 (677)
T KOG1915|consen   89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN--IAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHhcccccchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--cHHHHHHHH
Confidence            368999999999999999999987666655544 47899999999999999999999888888888998  899999999


Q ss_pred             HHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          145 KMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       145 ~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      +.++-.|. -.||.--...=.+.+.++.|-+.|++.+-.+|. .++|.
T Consensus       166 rW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wi  211 (677)
T KOG1915|consen  166 RWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWI  211 (677)
T ss_pred             HHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHH
Confidence            99999985 457765444434455678888899999999876 35554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.63  E-value=0.69  Score=41.89  Aligned_cols=142  Identities=12%  Similarity=0.052  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284           84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV  163 (284)
Q Consensus        84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v  163 (284)
                      -+|..-...+...+. .+.+-..|.+++...+-++++|..-+.+-.+.+++ ...|...++.+++..|.+...|.+=...
T Consensus         2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d-~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD-PKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            367666666666663 88899999999976677899998877776666542 5569999999999999999999988888


Q ss_pred             HHHccCcHHHHHHHHHHHhccCCCh-HHHHHHHHH--HhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284          164 LQALGGWEDELDYCQMLLGEDIFNN-SAWNQRYFV--VTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY  234 (284)
Q Consensus       164 l~~l~~~~eeL~~~~~~l~~dp~n~-sAW~~r~~l--l~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y  234 (284)
                      +..+++.+.+-..+++++..-|... +--.+..++  =.+.|..       +.-.....++.+..|++.+.+.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl-------~~v~~v~~R~~~~~~~~~~~~~f  146 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL-------ESVRKVEKRAEELFPEDNSLELF  146 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H-------HHHHHHHHHHHHHTTTS-HHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHhhhhhHHHHH
Confidence            8889999999999999999987776 322222232  1223432       33334555666777776665543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10941 hypothetical protein; Provisional

Probab=95.57  E-value=0.12  Score=46.76  Aligned_cols=61  Identities=11%  Similarity=0.011  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      ++.++.+++.++.++|.+..-|--||.++.+++.+..|+.-++..|+..|.+..+-.-|..
T Consensus       197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988655443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.57  E-value=0.0059  Score=56.37  Aligned_cols=102  Identities=19%  Similarity=0.230  Sum_probs=89.4

Q ss_pred             HHHHHHHhh-hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284           89 RRQIIETLH-TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL  167 (284)
Q Consensus        89 R~~~L~~l~-~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l  167 (284)
                      |....+.++ ..+.++++.+..+|.++|.+......|+-++.+|++  ...++.-|+.+++++|......-.|+.+-.-+
T Consensus       118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--p~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--PNAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccC--CchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            344444443 147899999999999999999999999999999998  89999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHhccCC-ChHHHH
Q 023284          168 GGWEDELDYCQMLLGEDIF-NNSAWN  192 (284)
Q Consensus       168 ~~~~eeL~~~~~~l~~dp~-n~sAW~  192 (284)
                      |.|++|-..+..++++|-+ .+++|.
T Consensus       196 g~~e~aa~dl~~a~kld~dE~~~a~l  221 (377)
T KOG1308|consen  196 GNWEEAAHDLALACKLDYDEANSATL  221 (377)
T ss_pred             hchHHHHHHHHHHHhccccHHHHHHH
Confidence            9999999999999999865 457774

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.49  E-value=0.6  Score=42.22  Aligned_cols=186  Identities=10%  Similarity=0.137  Sum_probs=110.1

Q ss_pred             ChhHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHhCCC----cH--HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-
Q 023284           45 KPEFSETMSYFR---AVYYSDERSSRSFQLTKEAICLNPG----NY--TVWHFRRQIIETLHTDLQDELAFVGRIAKSN-  114 (284)
Q Consensus        45 ~p~~~~a~~~~r---~~~~~~~~s~~aL~~~~~~L~lnP~----~~--~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-  114 (284)
                      .|++.+|...|.   ..+...+..++|.++|.++....-+    +.  .++..-+.++...  +.++++.++++++.+. 
T Consensus        28 ~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~Ai~~~~~A~~~y~  105 (282)
T PF14938_consen   28 KPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDEAIECYEKAIEIYR  105 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Confidence            478888776664   3555677889999999887654421    22  2222333344433  5889999999998753 


Q ss_pred             -CCChH----HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccCcHHHHHHHHHHHh
Q 023284          115 -SKNYQ----LWHHRRWVAEKL-GTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGGWEDELDYCQMLLG  182 (284)
Q Consensus       115 -pkn~~----aW~hR~~ll~~l-~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~~~eeL~~~~~~l~  182 (284)
                       ..++.    +...-+.++... |+  +++++++|.++++....+-      .+....+.+...+++|++|++.+++.+.
T Consensus       106 ~~G~~~~aA~~~~~lA~~ye~~~~d--~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  106 EAGRFSQAAKCLKELAEIYEEQLGD--YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             22222    233334555555 66  9999999999998743332      2344456677888999999999999998


Q ss_pred             ccCCCh-HHHHHHHHHHh------cCCCCchhhhhHHHHHHHHHHHHhcCCCCccH--HHHHHHHHcc
Q 023284          183 EDIFNN-SAWNQRYFVVT------RSPLLGGLIAMRDSEVNFTIEAILGNPENESP--WRYLRGLYKD  241 (284)
Q Consensus       183 ~dp~n~-sAW~~r~~ll~------~l~~~~~~~~~~~~el~~~~~~i~~~P~nesa--W~y~~~ll~~  241 (284)
                      ...++. .-+..+...|.      ..+..       -.+-..+++....+|+-.+.  ...+..|+..
T Consensus       184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~-------v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A  244 (282)
T PF14938_consen  184 KCLENNLLKYSAKEYFLKAILCHLAMGDY-------VAARKALERYCSQDPSFASSREYKFLEDLLEA  244 (282)
T ss_dssp             TCCCHCTTGHHHHHHHHHHHHHHHHTT-H-------HHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred             HhhcccccchhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence            765443 23433332221      22321       23445566666678866543  3344555554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.63  Score=42.76  Aligned_cols=151  Identities=12%  Similarity=0.022  Sum_probs=103.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~  141 (284)
                      ..+..+|+++..--.+-+|++-.+....|.|..... ++..+-+|++++-...|+-.+--.+-..-|.+.+.  +.++|.
T Consensus        23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i--~ADALr   99 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQ-EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI--YADALR   99 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc--cHHHHH
Confidence            445688999999999999999999999999999988 59999999999999999987766555555544444  333332


Q ss_pred             H------------------------------HHHHHHhCc--CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          142 F------------------------------TKKMLSLDA--KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       142 ~------------------------------~~~aL~~dp--kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      .                              +...++.-|  .....-.+-|-++.+-|.+++|+.-++.+++.---+.-
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl  179 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL  179 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence            2                              334444445  23344555666666667788888888888887655554


Q ss_pred             HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284          190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      .-++...+..+-+.       +..+++++.++|
T Consensus       180 lAYniALaHy~~~q-------yasALk~iSEIi  205 (459)
T KOG4340|consen  180 LAYNLALAHYSSRQ-------YASALKHISEII  205 (459)
T ss_pred             hHHHHHHHHHhhhh-------HHHHHHHHHHHH
Confidence            44444444433333       244555555544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.35  E-value=0.58  Score=48.31  Aligned_cols=132  Identities=6%  Similarity=0.008  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK  145 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~  145 (284)
                      .+|++..+++++..|+-.-|-..++.++.++|+ ..+++.+++..-..-+.+-....--..+++.+++  +++++.+|++
T Consensus        26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~--~d~~~~~Ye~  102 (932)
T KOG2053|consen   26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK--LDEAVHLYER  102 (932)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh--hhHHHHHHHH
Confidence            589999999999999999999999999999995 8899999988877777888888888899999999  9999999999


Q ss_pred             HHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh-HHHHHHHHHHhcC
Q 023284          146 MLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN-SAWNQRYFVVTRS  201 (284)
Q Consensus       146 aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~-sAW~~r~~ll~~l  201 (284)
                      ++..+|+ .+--.|.-.+.-+-+.|.+--..--++-+.-|.+. .-|+--..++...
T Consensus       103 ~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen  103 ANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             HHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence            9999999 88887776666665555332222222233556654 4465555555443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.081  Score=48.88  Aligned_cols=107  Identities=11%  Similarity=0.132  Sum_probs=85.9

Q ss_pred             HHHHHH--HHHHhcCCCCHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           50 ETMSYF--RAVYYSDERSSRSFQLTKEAICLNPGNY----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        50 ~a~~~~--r~~~~~~~~s~~aL~~~~~~L~lnP~~~----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      .|-++.  |.-+.+-.++..|..+|++.|+.+..+.    ..+++|..+-..+| +|..+|+-+.+++.++|++.-+...
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-NYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhcCcchhhhhhh
Confidence            455554  4455556667889999999999877654    66788999999999 6999999999999999999999877


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY  159 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~  159 (284)
                      -..++..|.+  +.+++..|+..+.+|-.+-.+-.-
T Consensus       159 ~Akc~~eLe~--~~~a~nw~ee~~~~d~e~K~~~~l  192 (390)
T KOG0551|consen  159 GAKCLLELER--FAEAVNWCEEGLQIDDEAKKAIEL  192 (390)
T ss_pred             hhHHHHHHHH--HHHHHHHHhhhhhhhHHHHHHHHH
Confidence            7888888887  888999998888777665544433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=0.49  Score=46.81  Aligned_cols=124  Identities=14%  Similarity=0.044  Sum_probs=98.2

Q ss_pred             eeecChhHHHH-HHHHHHHHhc-CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284           41 PIAYKPEFSET-MSYFRAVYYS-DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY  118 (284)
Q Consensus        41 ~I~~~p~~~~a-~~~~r~~~~~-~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~  118 (284)
                      -|.++|...+. ...++.++.. .+.+..++-....+++.||.+..+....+..+...|........+...+....|+|.
T Consensus        57 ~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~  136 (620)
T COG3914          57 GIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA  136 (620)
T ss_pred             cCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH
Confidence            34477777776 3344555544 577778888999999999999999999999998877656677777788999999999


Q ss_pred             HHHHHH------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284          119 QLWHHR------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA  166 (284)
Q Consensus       119 ~aW~hR------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~  166 (284)
                      +.-.|+      +.++..+|+  ..++.....++..+.|+|.+.-.+-.+..+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~  188 (620)
T COG3914         137 EFLGHLIRFYQLGRYLKLLGR--TAEAELALERAVDLLPKYPRVLGALMTARQE  188 (620)
T ss_pred             HHHhhHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence            999999      777777777  8888889999999999997776666555433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.12  E-value=0.89  Score=42.71  Aligned_cols=137  Identities=12%  Similarity=-0.008  Sum_probs=100.5

Q ss_pred             HhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----
Q 023284           59 YYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT-----  133 (284)
Q Consensus        59 ~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~-----  133 (284)
                      ....+.+++|++.++.+....-.+...|.+...+...||. |.++-    .+...-||++..=.-.--+-.++++     
T Consensus        67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~eA~----~~~~ka~k~pL~~RLlfhlahklndEk~~~  141 (557)
T KOG3785|consen   67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIEAK----SIAEKAPKTPLCIRLLFHLAHKLNDEKRIL  141 (557)
T ss_pred             HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHHHH----HHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence            3456677899999999999888899999999999999994 76663    3445556665331111111111221     


Q ss_pred             -----------------------CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284          134 -----------------------GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       134 -----------------------~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA  190 (284)
                                             --++++++.|.++|.-+|.-...=.|.+.++.++.-++-+-+...-.+...|+..-|
T Consensus       142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA  221 (557)
T KOG3785|consen  142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA  221 (557)
T ss_pred             HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence                                   128899999999998888766667788999999998888888899999999999888


Q ss_pred             HHHHHHHHhc
Q 023284          191 WNQRYFVVTR  200 (284)
Q Consensus       191 W~~r~~ll~~  200 (284)
                      -+-+.-.+.+
T Consensus       222 ~NLkacn~fR  231 (557)
T KOG3785|consen  222 KNLKACNLFR  231 (557)
T ss_pred             HHHHHHHHhh
Confidence            8877554443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.10  E-value=0.085  Score=48.43  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=81.4

Q ss_pred             hccccccCCCCCCCCCccccCCCCCCCCccee--ecChhH-HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCCCcHHH
Q 023284           11 QEAERLPLSQRPEWSDVTPIPQDDGPNPVVPI--AYKPEF-SETMSYFRAVYY--SDERSSRSFQLTKEAICLNPGNYTV   85 (284)
Q Consensus        11 ~~~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I--~~~p~~-~~a~~~~r~~~~--~~~~s~~aL~~~~~~L~lnP~~~~a   85 (284)
                      ..+.|.|++.. +-.-+.|+.+.....|+-+-  +-.|.- .+|....++...  +.+..++|..+++.++.+.|.+.++
T Consensus        74 ~~~~ya~~~~~-~~~~~~~~yd~~~~~~v~at~te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~  152 (472)
T KOG3824|consen   74 SPEKYAPAVQK-PTFLVDPIYDEQTAVPVMSTQTENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI  152 (472)
T ss_pred             ChhhccccccC-chhhccchhccccccccchhhcccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH
Confidence            45677777753 33456677665443343222  222222 345444444332  3455689999999999999999999


Q ss_pred             HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284           86 WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV  127 (284)
Q Consensus        86 W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l  127 (284)
                      ..--|.+.+.-. ++-++=.||-++|.++|.|..|..+|...
T Consensus       153 L~e~G~f~E~~~-~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  153 LIEMGQFREMHN-EIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHhHHHHhhh-hhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            999999888765 67889999999999999999999988644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.97  E-value=2.6  Score=44.04  Aligned_cols=156  Identities=11%  Similarity=0.018  Sum_probs=103.3

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC----h--HHHHHHHH
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPGNY-----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN----Y--QLWHHRRW  126 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~~~-----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn----~--~aW~hR~~  126 (284)
                      +....+..++|...++.++...|...     .+.+..+.++...| ++++++..+++++....+.    .  .+....+.
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G-~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG-ELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            33445667899999999998655532     34566677777777 6899999999998653321    1  23345567


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCcC--------ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC-----hHHHHH
Q 023284          127 VAEKLGTGAVNKELQFTKKMLSLDAK--------NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN-----NSAWNQ  193 (284)
Q Consensus       127 ll~~l~~~~~~eel~~~~~aL~~dpk--------N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n-----~sAW~~  193 (284)
                      ++...|+  +.++...+.+++.+-..        ....+..++.++...|++++|.+.+.+++......     ..++..
T Consensus       540 ~~~~~G~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  617 (903)
T PRK04841        540 ILFAQGF--LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM  617 (903)
T ss_pred             HHHHCCC--HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence            7777888  99999999998885222        12234456777788899999999999998864321     233334


Q ss_pred             HHHHHhcCCCCchhhhhHHHHHHHHHHHHh
Q 023284          194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAIL  223 (284)
Q Consensus       194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~  223 (284)
                      ++.+....+++       +++.+.+.+++.
T Consensus       618 la~~~~~~G~~-------~~A~~~l~~a~~  640 (903)
T PRK04841        618 LAKISLARGDL-------DNARRYLNRLEN  640 (903)
T ss_pred             HHHHHHHcCCH-------HHHHHHHHHHHH
Confidence            45555555654       444455555543

>PRK10941 hypothetical protein; Provisional

Probab=94.85  E-value=0.24  Score=44.82  Aligned_cols=59  Identities=7%  Similarity=-0.037  Sum_probs=33.7

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY  159 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~  159 (284)
                      +++.+|.+.+.++..+|++..-|.-||.++.++|.  +..|+..++..++..|.+..+=.-
T Consensus       196 ~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        196 QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--EHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHhCCCchhHHHH
Confidence            35555555555555566555555555555555555  555555555555555555544433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.73  E-value=0.25  Score=44.06  Aligned_cols=108  Identities=15%  Similarity=0.001  Sum_probs=76.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------------HHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKM------------------LSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~a------------------L~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      ...+.+.+|.-+.+.|+  +.+|..+|..|                  +++|..+.....+-..++-..+.|-+.++-+.
T Consensus       177 av~~l~q~GN~lfk~~~--ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGR--YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhHHHHHhhhhhhhhcc--HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            34455667777777777  66666555544                  34455555555555556666678889999999


Q ss_pred             HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284          179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWR  233 (284)
Q Consensus       179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~  233 (284)
                      ..|..+|+|.-|++-|+.+....-+       ..++-+-+.++|+++|.-.|+-.
T Consensus       255 eiL~~~~~nvKA~frRakAhaa~Wn-------~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  255 EILRHHPGNVKAYFRRAKAHAAVWN-------EAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHhcChhhHHHHH
Confidence            9999999999999999876544333       24566677899999998887653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.66  E-value=1.3  Score=43.05  Aligned_cols=150  Identities=17%  Similarity=0.184  Sum_probs=114.3

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           70 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      .-++..|..|--+...|..-+..=...+ ++..|-..++++|..+..|...|.--.-.-.+-..  ...|-...++|+.+
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~-e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~--vNhARNv~dRAvt~  136 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQK-EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ--VNHARNVWDRAVTI  136 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh--HhHHHHHHHHHHHh
Confidence            4466788888888999987777766666 58999999999999999999999766555444444  88999999999999


Q ss_pred             CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH-HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284          150 DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN-QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN  228 (284)
Q Consensus       150 dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~-~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n  228 (284)
                      =|+--.-|+--...=..+|+...+-+.++++++-.|.-. ||+ +-.+=+..- .       .+.+-..+.+.+..+|+ 
T Consensus       137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRyk-e-------ieraR~IYerfV~~HP~-  206 (677)
T KOG1915|consen  137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRYK-E-------IERARSIYERFVLVHPK-  206 (677)
T ss_pred             cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhh-H-------HHHHHHHHHHHheeccc-
Confidence            999999999877777889999999999999999999864 565 333333211 1       13344455566666666 


Q ss_pred             ccHH
Q 023284          229 ESPW  232 (284)
Q Consensus       229 esaW  232 (284)
                      .+.|
T Consensus       207 v~~w  210 (677)
T KOG1915|consen  207 VSNW  210 (677)
T ss_pred             HHHH
Confidence            3444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=0.43  Score=44.47  Aligned_cols=103  Identities=11%  Similarity=0.038  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH----HHHHHHccCcHHHHH
Q 023284          100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR----QWVLQALGGWEDELD  175 (284)
Q Consensus       100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r----~~vl~~l~~~~eeL~  175 (284)
                      .-++-...+++|...|++--+|....-+...+|+  ...-...+++++-.=.-+..+.+|.    ++.+..+|-|++|-+
T Consensus       119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~--~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk  196 (491)
T KOG2610|consen  119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN--QIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK  196 (491)
T ss_pred             ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc--hhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence            3344445588889999999998888888888887  6677777777776622333334443    455677788888888


Q ss_pred             HHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          176 YCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       176 ~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      ..++++++|+.+.-|-+-+..++..-++.
T Consensus       197 ~A~ralqiN~~D~Wa~Ha~aHVlem~~r~  225 (491)
T KOG2610|consen  197 QADRALQINRFDCWASHAKAHVLEMNGRH  225 (491)
T ss_pred             HHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence            88999999998888888888888766554

>smart00028 TPR Tetratricopeptide repeats

Probab=94.38  E-value=0.076  Score=29.45  Aligned_cols=31  Identities=23%  Similarity=0.243  Sum_probs=18.2

Q ss_pred             HHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                      +|..++.++..+++++++..++.++++.+|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555555666666666666666666655554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.13  E-value=0.18  Score=33.97  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=29.3

Q ss_pred             HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284          156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l  197 (284)
                      +-++.+....++|+|++|+.+++.+|+++|+|..|-.-+..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            345666677788888888888888888888888776555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.87  E-value=1.7  Score=39.04  Aligned_cols=96  Identities=14%  Similarity=0.114  Sum_probs=72.1

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHh
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPGNY---TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKL  131 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~~~---~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l  131 (284)
                      ++.++. ...|.+.|..-|+..|++.   .|.++.|.++...| +++++...|..+.+..|++.   .+..--+.++..+
T Consensus       151 ~~ksgd-y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l  228 (262)
T COG1729         151 LYKSGD-YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL  228 (262)
T ss_pred             HHHcCC-HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence            345555 5788888888898888765   67788888888888 68888888888888766554   5566667777777


Q ss_pred             CCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284          132 GTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      |+  .++|...+.++++..|..-.|=
T Consensus       229 ~~--~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         229 GN--TDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             cC--HHHHHHHHHHHHHHCCCCHHHH
Confidence            77  7777777777777777766553

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=93.76  E-value=0.83  Score=44.50  Aligned_cols=90  Identities=11%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284           67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM  146 (284)
Q Consensus        67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a  146 (284)
                      +-..+|..|+...+.+...|..--...+..+ .+.+--+.|..+|..+|+++..|-+-..-....+.. .+.+-+.+.+.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~-~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalflrg  166 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKK-TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHHHHH
Confidence            5666777777777777777765544444444 255666677777777777777776665444444432 56667777777


Q ss_pred             HHhCcCChhHHh
Q 023284          147 LSLDAKNYHAWS  158 (284)
Q Consensus       147 L~~dpkN~~AW~  158 (284)
                      |..+|.+...|.
T Consensus       167 LR~npdsp~Lw~  178 (568)
T KOG2396|consen  167 LRFNPDSPKLWK  178 (568)
T ss_pred             hhcCCCChHHHH
Confidence            777777777664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.75  E-value=0.11  Score=31.70  Aligned_cols=26  Identities=19%  Similarity=0.391  Sum_probs=18.0

Q ss_pred             HHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284          156 AWSYRQWVLQALGGWEDELDYCQMLL  181 (284)
Q Consensus       156 AW~~r~~vl~~l~~~~eeL~~~~~~l  181 (284)
                      ||.+.|.+....|+|++|+++++++|
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677777777777777777777744

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.70  E-value=0.11  Score=30.34  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=18.3

Q ss_pred             HHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                      |.++.+.+....|++++|++.++++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455555555566666666666666666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.66  E-value=5.3  Score=41.79  Aligned_cols=157  Identities=11%  Similarity=-0.027  Sum_probs=101.2

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCCC-----c----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh-----HHHHH
Q 023284           58 VYYSDERSSRSFQLTKEAICLNPG-----N----YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY-----QLWHH  123 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~lnP~-----~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~-----~aW~h  123 (284)
                      +....++.+++......+...-+.     .    ..+-..++.+....| +++++...++.++...|...     .+...
T Consensus       418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~  496 (903)
T PRK04841        418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSV  496 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            333455667888888877654332     1    122223444444556 68999999999998655432     24556


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCC----h--hHHhHHHHHHHHccCcHHHHHHHHHHHhccCC--------ChH
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKN----Y--HAWSYRQWVLQALGGWEDELDYCQMLLGEDIF--------NNS  189 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN----~--~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~--------n~s  189 (284)
                      .+.++...|+  ++++...+.+++......    .  .+....+.+....|++++|...+.+++..-..        ...
T Consensus       497 lg~~~~~~G~--~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  574 (903)
T PRK04841        497 LGEVHHCKGE--LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF  574 (903)
T ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            6777777888  999999999999754321    1  23445677778889999999999998885221        122


Q ss_pred             HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284          190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG  224 (284)
Q Consensus       190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~  224 (284)
                      ++..++.++...|+.       +++.+.+.+++..
T Consensus       575 ~~~~la~~~~~~G~~-------~~A~~~~~~al~~  602 (903)
T PRK04841        575 LLRIRAQLLWEWARL-------DEAEQCARKGLEV  602 (903)
T ss_pred             HHHHHHHHHHHhcCH-------HHHHHHHHHhHHh
Confidence            344556666666764       5556666666554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.47  E-value=1.8  Score=42.33  Aligned_cols=104  Identities=11%  Similarity=0.147  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--cCC--hhHHhHHHHHHHHccCcHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD--AKN--YHAWSYRQWVLQALGGWEDEL  174 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d--pkN--~~AW~~r~~vl~~l~~~~eeL  174 (284)
                      +.+.+.+.++......|++.---..+|.+....|+  ++++++.+++++...  -+-  .-+++-++|+...+.+|++|.
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~--~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN--LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            56778888999999999999888899999999999  999999999988421  111  234555788888889999999


Q ss_pred             HHHHHHHhccCCChHHHHHH-HHHHhcCCCC
Q 023284          175 DYCQMLLGEDIFNNSAWNQR-YFVVTRSPLL  204 (284)
Q Consensus       175 ~~~~~~l~~dp~n~sAW~~r-~~ll~~l~~~  204 (284)
                      +++.+.++.+.-....+.|. +.++..+++.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            99999999765544444444 4445555554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.34  E-value=6  Score=35.81  Aligned_cols=174  Identities=13%  Similarity=-0.008  Sum_probs=116.1

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           70 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      .+++.++.-.-..-..|.-.+.++..-+.+++++++.+.....     -.+-.-.-.|+.++.+  .+-+..-+.++.++
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-----lE~~Al~VqI~lk~~r--~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-----LEAAALNVQILLKMHR--FDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch-----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHcc
Confidence            3456666666666677777777666656678888887766433     3333334445556655  67777777788777


Q ss_pred             CcCChhHHhHHHHHHHHc--cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284          150 DAKNYHAWSYRQWVLQAL--GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE  227 (284)
Q Consensus       150 dpkN~~AW~~r~~vl~~l--~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~  227 (284)
                      |-.-.-.=.--.|+--.-  +...+|+-.|+.+-+..|.+.-..+....+...++++       +++......+|..+|+
T Consensus       167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~-------eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY-------EEAESLLEEALDKDAK  239 (299)
T ss_pred             chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH-------HHHHHHHHHHHhccCC
Confidence            765432212223332222  3578999999999999999999999998888888885       7788888999999999


Q ss_pred             CccHHHHHHHHHccCCccCCCChhhHHHHH
Q 023284          228 NESPWRYLRGLYKDDTESWINDPRMLLSVF  257 (284)
Q Consensus       228 nesaW~y~~~ll~~~~~~~~~~~~~~~~~~  257 (284)
                      ++..-..+..+....|.+-......+++.+
T Consensus       240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  240 DPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            998776666555555444333334444443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.31  E-value=0.33  Score=47.59  Aligned_cols=89  Identities=15%  Similarity=0.012  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284          100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus       100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      ...++..+.+++...|...-..-.|..++.+-+- ...-.||..|-.++++||....||++..-++..++++.+|++|-.
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~  469 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW  469 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence            4567777777777778777777777666654321 115567777778888888888888888888888888888888877


Q ss_pred             HHHhccCCCh
Q 023284          179 MLLGEDIFNN  188 (284)
Q Consensus       179 ~~l~~dp~n~  188 (284)
                      .+....|.|.
T Consensus       470 alq~~~Ptd~  479 (758)
T KOG1310|consen  470 ALQMSFPTDV  479 (758)
T ss_pred             HHhhcCchhh
Confidence            7777777664

>smart00028 TPR Tetratricopeptide repeats

Probab=93.31  E-value=0.2  Score=27.59  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK  152 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk  152 (284)
                      +|..++.++..+++  ++++..++.++++++|.
T Consensus         3 ~~~~~a~~~~~~~~--~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGD--YDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhh--HHHHHHHHHHHHccCCC
Confidence            45555555555555  55666666666555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=93.27  E-value=4.8  Score=38.14  Aligned_cols=131  Identities=10%  Similarity=0.016  Sum_probs=91.8

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284           75 AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY  154 (284)
Q Consensus        75 ~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~  154 (284)
                      .++-+|.-..+.   ..-+..+| +.++|.+.+..+++..-..-     -...+..+.......-++..+++++.+|.+.
T Consensus       258 ~lr~~p~l~~~~---a~~li~l~-~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p  328 (400)
T COG3071         258 KLRNDPELVVAY---AERLIRLG-DHDEAQEIIEDALKRQWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP  328 (400)
T ss_pred             HhhcChhHHHHH---HHHHHHcC-ChHHHHHHHHHHHHhccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence            444455544433   23345566 57788888888887653332     1222233322226677788899999999999


Q ss_pred             hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284          155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEV  215 (284)
Q Consensus       155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el  215 (284)
                      ..+...|.+..+-+.|.+|-++++.+|..-|+. +.|..++.++.++|....+....++++
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999999999998889999999999999988876 458888999998887655555556555

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.16  E-value=0.52  Score=46.27  Aligned_cols=107  Identities=12%  Similarity=-0.017  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCCC
Q 023284           46 PEFSETMSYFRAVYYSDE--RS----SRSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSNSKN  117 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~--~s----~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn  117 (284)
                      |.+++..-+.......+.  ..    ..|+..+..+++.-|......-.|..++..-+  .+.-.||.-+..++.+||-.
T Consensus       365 ~~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~  444 (758)
T KOG1310|consen  365 PRFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI  444 (758)
T ss_pred             cchhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH
Confidence            456666666666665432  22    36899999999999999999999988887643  14457899999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284          118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY  154 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~  154 (284)
                      ..||++....|..+++  +.++++|-..+....|.+.
T Consensus       445 ~kah~~la~aL~el~r--~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  445 QKAHFRLARALNELTR--YLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHHHHHhh--HHHhhhhHHHHhhcCchhh
Confidence            9999999999999999  9999999999888888765

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.04  E-value=6.9  Score=35.67  Aligned_cols=124  Identities=16%  Similarity=0.148  Sum_probs=81.2

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH-hCCCC
Q 023284           43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPG----NYTVWHFRRQIIETLHTDLQDELAFVGRIAK-SNSKN  117 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~----~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~-~~pkn  117 (284)
                      ....+....|..+..+..+.+..+-|......+...++.    ...+-.-+..++-..| .-.+++..++..+. ...+.
T Consensus       140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g-~~~~Ai~~L~~~~~~~~~~~  218 (352)
T PF02259_consen  140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG-EQEEAIQKLRELLKCRLSKN  218 (352)
T ss_pred             cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhhhc
Confidence            345566678888888888888888999999998887633    2344444566666666 35677777766666 11111


Q ss_pred             ---------------------------------hHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284          118 ---------------------------------YQLWHHRRWVAEKL----GTGAVNKELQFTKKMLSLDAKNYHAWSYR  160 (284)
Q Consensus       118 ---------------------------------~~aW~hR~~ll~~l----~~~~~~eel~~~~~aL~~dpkN~~AW~~r  160 (284)
                                                       ..++..++.....+    +....++.+..+..+++.+|.++.+|++-
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~  298 (352)
T PF02259_consen  219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW  298 (352)
T ss_pred             cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence                                             12344444444444    22337778888888888888888888887


Q ss_pred             HHHHHHc
Q 023284          161 QWVLQAL  167 (284)
Q Consensus       161 ~~vl~~l  167 (284)
                      +.....+
T Consensus       299 a~~~~~~  305 (352)
T PF02259_consen  299 ALFNDKL  305 (352)
T ss_pred             HHHHHHH
Confidence            7666544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.04  E-value=2.7  Score=37.84  Aligned_cols=94  Identities=11%  Similarity=-0.031  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---hHHhHHHHHHHHccCcHH
Q 023284           99 DLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---HAWSYRQWVLQALGGWED  172 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~AW~~r~~vl~~l~~~~e  172 (284)
                      +|.+|..-|..-+...|++.   .|.+..|.++...|+  ++++...|..+.+..|++.   .+..-.+.++..++.-++
T Consensus       156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~--y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~  233 (262)
T COG1729         156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD--YEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE  233 (262)
T ss_pred             CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc--chHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence            58999999999999998765   667777888888898  9999999999999877665   668899999999999999


Q ss_pred             HHHHHHHHHhccCCChHHHHHH
Q 023284          173 ELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       173 eL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      |...+.++++..|....|=.-+
T Consensus       234 A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         234 ACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999998875544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.01  E-value=0.69  Score=45.06  Aligned_cols=128  Identities=11%  Similarity=0.051  Sum_probs=77.2

Q ss_pred             hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhCcC------ChhHHhH-----
Q 023284           98 TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKML-------SLDAK------NYHAWSY-----  159 (284)
Q Consensus        98 ~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL-------~~dpk------N~~AW~~-----  159 (284)
                      ++.++-++.-.++|+++|.+..||.-...    -......++.+++.+++       ..+..      .+..|..     
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAE----EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~  257 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAE----EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV  257 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhccc----ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence            45778888999999999999999843221    00011344444444443       33321      1122222     


Q ss_pred             -------HHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHHHHHhcCCCC-
Q 023284          160 -------RQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR---SPLLGGLIAMRDSEVNFTIEAILGNPEN-  228 (284)
Q Consensus       160 -------r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~---l~~~~~~~~~~~~el~~~~~~i~~~P~n-  228 (284)
                             .+.+..++|+..||++.+..+++.+|. .+..+-|..++..   ++++.           -++..|..+.+. 
T Consensus       258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-~~~l~IrenLie~LLelq~Ya-----------d~q~lL~kYdDi~  325 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-LDNLNIRENLIEALLELQAYA-----------DVQALLAKYDDIS  325 (539)
T ss_pred             hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-cchhhHHHHHHHHHHhcCCHH-----------HHHHHHHHhcccc
Confidence                   245678899999999999999999884 2344445444443   44442           233444455432 


Q ss_pred             ---ccHHHHHHHHHcc
Q 023284          229 ---ESPWRYLRGLYKD  241 (284)
Q Consensus       229 ---esaW~y~~~ll~~  241 (284)
                         ..+|.|-+.++..
T Consensus       326 lpkSAti~YTaALLka  341 (539)
T PF04184_consen  326 LPKSATICYTAALLKA  341 (539)
T ss_pred             CCchHHHHHHHHHHHH
Confidence               4689998888763

The molecular function of this protein is uncertain.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.98  E-value=1.4  Score=42.92  Aligned_cols=89  Identities=15%  Similarity=0.093  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-cHHHHHHHHHH
Q 023284          102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-WEDELDYCQML  180 (284)
Q Consensus       102 ~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-~~eeL~~~~~~  180 (284)
                      .-+..+..++...+.+...|..-....++.+.  +.+--..|.++|.+||+|...|.+-+.-....+. .+.+-+.+.+.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            44455555666666666666554444444433  4444455666666666666666665544444443 45555666666


Q ss_pred             HhccCCChHHHH
Q 023284          181 LGEDIFNNSAWN  192 (284)
Q Consensus       181 l~~dp~n~sAW~  192 (284)
                      |+.||++...|.
T Consensus       167 LR~npdsp~Lw~  178 (568)
T KOG2396|consen  167 LRFNPDSPKLWK  178 (568)
T ss_pred             hhcCCCChHHHH
Confidence            666666665554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.78  E-value=2.2  Score=34.08  Aligned_cols=64  Identities=9%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRI  110 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~  110 (284)
                      ..+..+...........+..++|+..+..++.++|-+-.+|...-.++...| +..++++.|+++
T Consensus        59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~  122 (146)
T PF03704_consen   59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQG-RRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence            3344444444444444556677777777777777777777777777777777 466777766643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.66  E-value=4.9  Score=35.99  Aligned_cols=110  Identities=7%  Similarity=-0.020  Sum_probs=74.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHH-----HHHHccCcHHHHHHHHHHHhccCCChHH-
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-----VLQALGGWEDELDYCQMLLGEDIFNNSA-  190 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~-----vl~~l~~~~eeL~~~~~~l~~dp~n~sA-  190 (284)
                      ...-|+..|....+-|+  +.+|...++.+...+|-...+  .+..     +..+-+.+++|+..+++.|.++|.+..+ 
T Consensus        33 p~~~LY~~g~~~L~~gn--~~~A~~~fe~l~~~~p~s~~~--~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          33 PASELYNEGLTELQKGN--YEEAIKYFEALDSRHPFSPYS--EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            45667777777777777  999999999999888876654  3333     3345567899999999999999987754 


Q ss_pred             --HHHHHHHHh-cCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          191 --WNQRYFVVT-RSPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       191 --W~~r~~ll~-~l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                        .+-+|.... .............+++..+.+.|...|+.+-
T Consensus       109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105         109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence              333333311 1222111112235678888999999998764

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=92.65  E-value=0.24  Score=45.58  Aligned_cols=60  Identities=17%  Similarity=0.106  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284          100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ  161 (284)
Q Consensus       100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~  161 (284)
                      .+++...++.++.+.|.+.++...-|.....-+.  +-++=.||-++|.++|.|-.|..+|.
T Consensus       132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~--iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHNE--IVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh--hHhhhhhhheeeeeCCCchHHHhhhh
Confidence            5566666666666666666666655555554443  55555666666666666666666654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.58  E-value=13  Score=37.69  Aligned_cols=222  Identities=15%  Similarity=0.130  Sum_probs=137.5

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCcHHHHHH----HHHHHHHhh---hCHHHHHHHHHHHHHh
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERS-SRSFQLTKEAICLNPGNYTVWHF----RRQIIETLH---TDLQDELAFVGRIAKS  113 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s-~~aL~~~~~~L~lnP~~~~aW~~----R~~~L~~l~---~~~~~eL~~~~~~l~~  113 (284)
                      |.=||-....|..+-..  +.+.. .+-.-+|+++++.-|.+|..|+.    |+....++-   ..++.--.|+++++..
T Consensus        20 ilRnp~svk~W~RYIe~--k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~   97 (835)
T KOG2047|consen   20 ILRNPFSVKCWLRYIEH--KAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVF   97 (835)
T ss_pred             HHcCchhHHHHHHHHHH--HccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH
Confidence            44566666667655332  23333 56777999999999999999984    333344332   2366677899999998


Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh--HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284          114 NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH--AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW  191 (284)
Q Consensus       114 ~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~--AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW  191 (284)
                      -.|-+.+|.--..++..-|.  ...--..++++|..=|.--|  .|-----.+...+..+-++..+.+.|+.+|+...  
T Consensus        98 mHkmpRIwl~Ylq~l~~Q~~--iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e--  173 (835)
T KOG2047|consen   98 MHKMPRIWLDYLQFLIKQGL--ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE--  173 (835)
T ss_pred             HhcCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH--
Confidence            88999999888777777777  77788889999988776544  4544444556667788999999999999998632  


Q ss_pred             HHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCC--ChhhHHHHHhhhhcccccccc
Q 023284          192 NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWIN--DPRMLLSVFESFEYQKQLCFC  269 (284)
Q Consensus       192 ~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  269 (284)
                      .|... |...++.+++...+..-+.-=...=+.-|.|...|.-+--++.+.+.-+-+  ...++.+-..-.--|=-+.||
T Consensus       174 eyie~-L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~  252 (835)
T KOG2047|consen  174 EYIEY-LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC  252 (835)
T ss_pred             HHHHH-HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence            33333 334444332211111111110111235677778998887777765443322  224444433322233334566


Q ss_pred             c
Q 023284          270 S  270 (284)
Q Consensus       270 ~  270 (284)
                      |
T Consensus       253 S  253 (835)
T KOG2047|consen  253 S  253 (835)
T ss_pred             H
Confidence            5

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.26  E-value=1.1  Score=35.77  Aligned_cols=51  Identities=20%  Similarity=0.264  Sum_probs=36.5

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284          128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQML  180 (284)
Q Consensus       128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~  180 (284)
                      +...|+  +++++..+.+++..||-|-.+|.....++...|+..+|+..|.+.
T Consensus        72 ~~~~~~--~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   72 LLEAGD--YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHTT---HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHhccC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            344566  778888888888888888888888888888888887777776654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.25  E-value=14  Score=37.40  Aligned_cols=175  Identities=13%  Similarity=0.105  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC------
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK------  116 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk------  116 (284)
                      ...+.|..|+.++...+.-+.|-.+++++.+.+-+-    ..+|..-+..=.... .++.|+++.+++... |+      
T Consensus       385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~-~~~~Al~lm~~A~~v-P~~~~~~~  462 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE-NFEAALKLMRRATHV-PTNPELEY  462 (835)
T ss_pred             ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhcC-CCchhhhh
Confidence            345667777777777666677777777777766543    355544443222222 477788877776542 22      


Q ss_pred             -----ChHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284          117 -----NYQLWHHR--------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       117 -----n~~aW~hR--------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~  183 (284)
                           ..|+=.||        .-+...+|-  ++.--..|+++|.+.---...--+-+.+|..-.-++++...|++-|.+
T Consensus       463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt--festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  463 YDNSEPVQARLHRSLKIWSMYADLEESLGT--FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             hcCCCcHHHHHHHhHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence                 23444443        334445565  677777888888877776666666666666666678888888888877


Q ss_pred             c--CCChHHHHHH-HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          184 D--IFNNSAWNQR-YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       184 d--p~n~sAW~~r-~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      .  |.-+..|+-- -..+.+.|...     ++++=+.++++|+..|...+
T Consensus       541 Fk~p~v~diW~tYLtkfi~rygg~k-----lEraRdLFEqaL~~Cpp~~a  585 (835)
T KOG2047|consen  541 FKWPNVYDIWNTYLTKFIKRYGGTK-----LERARDLFEQALDGCPPEHA  585 (835)
T ss_pred             CCCccHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCCHHHH
Confidence            5  5666778743 22333443321     35556667777777774443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.19  E-value=3.2  Score=38.84  Aligned_cols=114  Identities=10%  Similarity=0.023  Sum_probs=79.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh-CCCChHHHHHHH---HHHHHhCCCCHHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS-NSKNYQLWHHRR---WVAEKLGTGAVNK  138 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~-~pkn~~aW~hR~---~ll~~l~~~~~~e  138 (284)
                      +...+|-...+++|.-.|.+.-+|..--..-..+|. ...-...+++++-. ||.-+..=+-.|   .-|..+|-  +.+
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~--y~d  193 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI--YDD  193 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc-hhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc--chh
Confidence            344567778899999999999999887777777773 45666677777766 444432222222   34455666  888


Q ss_pred             HHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHH
Q 023284          139 ELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQM  179 (284)
Q Consensus       139 el~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~  179 (284)
                      +-+.-++++++++.+..|=+-+.-|++.-+++.++.++..+
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            88888888888888877777777777777776666666543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.11  E-value=0.41  Score=27.75  Aligned_cols=31  Identities=13%  Similarity=0.168  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284           85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSK  116 (284)
Q Consensus        85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk  116 (284)
                      |.+..+.+...+| ++++++..+++++...|+
T Consensus         2 a~~~~a~~~~~~g-~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLG-DYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHC-HHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcc-CHHHHHHHHHHHHHHCcC
Confidence            3444445554444 355555555555555554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=91.86  E-value=5.1  Score=43.73  Aligned_cols=146  Identities=12%  Similarity=0.026  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK  145 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~  145 (284)
                      +...+.+++|-+ +.+-|+++-....++..-+. ..+|.++++..++..-.-..+|.-.+..|.+-+.  -+.+...+.+
T Consensus      1514 esl~kVFeRAcq-ycd~~~V~~~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne--~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1514 ESLKKVFERACQ-YCDAYTVHLKLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE--AEAARELLKR 1589 (1710)
T ss_pred             HHHHHHHHHHHH-hcchHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH--HHHHHHHHHH
Confidence            345567777766 45678888888888888774 7889999999998888888889877777666655  6778888999


Q ss_pred             HHHhCcCChhHHhHHHH--HHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284          146 MLSLDAKNYHAWSYRQW--VLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEV  215 (284)
Q Consensus       146 aL~~dpkN~~AW~~r~~--vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el  215 (284)
                      ||+.=|+.-|.=.-..+  +-.+.|+-+.....++..+..+|.-...|+-.--.-.+.+.....+.++++.+
T Consensus      1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred             HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            99999995555444433  34566788888889999999999999999854333333333222333444444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=91.83  E-value=2.3  Score=38.41  Aligned_cols=133  Identities=11%  Similarity=0.090  Sum_probs=84.5

Q ss_pred             HHhcCCCCHHHHHHHHHHHHhC---CCcH---HHHHHHHHHHHHh-hhCHHHHHHHHHHHHHhCCCCh------HHHHHH
Q 023284           58 VYYSDERSSRSFQLTKEAICLN---PGNY---TVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKNY------QLWHHR  124 (284)
Q Consensus        58 ~~~~~~~s~~aL~~~~~~L~ln---P~~~---~aW~~R~~~L~~l-~~~~~~eL~~~~~~l~~~pkn~------~aW~hR  124 (284)
                      ++.+. ..++|+.++.+++.+.   ....   .+....+.++... + ++++++++|.+++......-      .+...-
T Consensus        84 ~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~  161 (282)
T PF14938_consen   84 CYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKA  161 (282)
T ss_dssp             HHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence            33334 5578999999988752   2222   3344445555555 5 69999999999988643222      223334


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCCh-hHHhHH------HHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNY-HAWSYR------QWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~-~AW~~r------~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      +.+...+|+  ++++++.+++++...-.+. .-|+.+      +.+.-..|+...|-..+++....+|+..+.--++
T Consensus       162 A~l~~~l~~--y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~  236 (282)
T PF14938_consen  162 ADLYARLGR--YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK  236 (282)
T ss_dssp             HHHHHHTT---HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred             HHHHHHhCC--HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            556667788  9999999999998654332 223333      3334456788899999999999999877654443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.09  E-value=3.4  Score=39.16  Aligned_cols=168  Identities=9%  Similarity=0.075  Sum_probs=105.1

Q ss_pred             CCCCCCCCCccccCCCCCCCCcceeecChh----HHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHhCCCcHHHHHHHHHH
Q 023284           18 LSQRPEWSDVTPIPQDDGPNPVVPIAYKPE----FSETMSYFRAVYYSDERSSRSFQLTKE-AICLNPGNYTVWHFRRQI   92 (284)
Q Consensus        18 ~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~----~~~a~~~~r~~~~~~~~s~~aL~~~~~-~L~lnP~~~~aW~~R~~~   92 (284)
                      |++-++|+.+.-+-++-...|.|.+.-.+.    |+-|.+.|    .+.+..++|++.... +....+.+...+-..|++
T Consensus       151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr----n~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR----NKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc----ccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            788888887776665544445554443443    33344443    334556899999988 667778888999988888


Q ss_pred             HHHhh--------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-----HHHHHh----CcCCh
Q 023284           93 IETLH--------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA-VNKELQFT-----KKMLSL----DAKNY  154 (284)
Q Consensus        93 L~~l~--------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~-~~eel~~~-----~~aL~~----dpkN~  154 (284)
                      .+.+-        ..+.+++..|.++...+|.-|..=|.- .++...|... -..++.-+     ..+.++    .-.+|
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~A-tLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY  305 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAA-TLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY  305 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHH-HHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence            87652        137899999999999997666554433 3444444311 11122211     122222    22444


Q ss_pred             hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284          155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ  193 (284)
Q Consensus       155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~  193 (284)
                      +.-.-..-+---.++++++..+.++++...|.   +|.-
T Consensus       306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~---~W~l  341 (374)
T PF13281_consen  306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPP---AWEL  341 (374)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc---chhH
Confidence            44444444455578899999999999999765   6753

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.64  E-value=13  Score=33.83  Aligned_cols=146  Identities=13%  Similarity=0.080  Sum_probs=92.6

Q ss_pred             CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CcCC
Q 023284           79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK----NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL-DAKN  153 (284)
Q Consensus        79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk----n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~-dpkN  153 (284)
                      .......|..-..+....| .++-+...+.++...++.    ...+-..+.-++-..|+  ..+++..+...++. ..++
T Consensus       142 ~~~~~~~~l~~a~~aRk~g-~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--~~~Ai~~L~~~~~~~~~~~  218 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAG-NFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--QEEAIQKLRELLKCRLSKN  218 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCC-CcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhhhc
Confidence            4444555555555555556 477888888888776532    23444445666666777  77888877777771 1111


Q ss_pred             ---------------------------------hhHHhHHHHHHHHc------cCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          154 ---------------------------------YHAWSYRQWVLQAL------GGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       154 ---------------------------------~~AW~~r~~vl~~l------~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                                                       ..++..+|-.....      +..++.+..+.++++.+|....+|++-
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~  298 (352)
T PF02259_consen  219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW  298 (352)
T ss_pred             cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence                                             12333444444445      456778999999999999999999998


Q ss_pred             HHHHhcCCCCc----------hhhhhHHHHHHHHHHHHhcCCC
Q 023284          195 YFVVTRSPLLG----------GLIAMRDSEVNFTIEAILGNPE  227 (284)
Q Consensus       195 ~~ll~~l~~~~----------~~~~~~~~el~~~~~~i~~~P~  227 (284)
                      +....++-...          ........++.+|-+++...|+
T Consensus       299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            87665542111          1123345577888888877777

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.51  E-value=1.7  Score=40.15  Aligned_cols=85  Identities=13%  Similarity=0.126  Sum_probs=60.6

Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH-HHHHHHHccCcHHHHHHHHHHHhccC
Q 023284          107 VGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY-RQWVLQALGGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~-r~~vl~~l~~~~eeL~~~~~~l~~dp  185 (284)
                      +-+.....|.+...|..-..-..+.+.  +.+--..|..+|+++|.|...|.+ -..=+.-.++.+.+...+.+.|+.+|
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~--y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKM--YGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            344555667777777766555555554  666667888888888888888877 33445555677788888888888888


Q ss_pred             CChHHHHH
Q 023284          186 FNNSAWNQ  193 (284)
Q Consensus       186 ~n~sAW~~  193 (284)
                      ++.-.|.-
T Consensus       174 ~~p~iw~e  181 (435)
T COG5191         174 RSPRIWIE  181 (435)
T ss_pred             CCchHHHH
Confidence            88888863

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.25  E-value=3.9  Score=37.78  Aligned_cols=82  Identities=12%  Similarity=0.098  Sum_probs=69.7

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      .++++++++..-.+.+||+-.+..-.|.++.+..+  +.++-+||++.....|+-..-=.|-+.-+.+-+.+.+||....
T Consensus        25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~--f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~  102 (459)
T KOG4340|consen   25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE--FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF  102 (459)
T ss_pred             hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            48899999999999999999999999999999887  9999999999999999987766666667777778888877665


Q ss_pred             HHHh
Q 023284          179 MLLG  182 (284)
Q Consensus       179 ~~l~  182 (284)
                      .+..
T Consensus       103 ~~~D  106 (459)
T KOG4340|consen  103 LLLD  106 (459)
T ss_pred             HhcC
Confidence            5443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.05  E-value=7.1  Score=38.15  Aligned_cols=112  Identities=13%  Similarity=0.119  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhCCCCHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY----QLWHHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~----~aW~hR~~ll~~l~~~~~~eel~  141 (284)
                      ++|.++....+...|+..-....++++....| +.+++++.+++++....+-.    -+.+-++|....+.+  ++++..
T Consensus       250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~--w~~A~~  326 (468)
T PF10300_consen  250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD--WEEAAE  326 (468)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch--HHHHHH
Confidence            67889999999999999998899999998888 69999999998884222211    224456788888888  999999


Q ss_pred             HHHHHHHhCcCChhHHhH--HHHHHHHccCc-------HHHHHHHHHHH
Q 023284          142 FTKKMLSLDAKNYHAWSY--RQWVLQALGGW-------EDELDYCQMLL  181 (284)
Q Consensus       142 ~~~~aL~~dpkN~~AW~~--r~~vl~~l~~~-------~eeL~~~~~~l  181 (284)
                      ++.++++.+.- .+|+++  .+-++..+++.       ++|.+.+.++-
T Consensus       327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            99999985443 334333  34455666666       55555555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.05  E-value=0.5  Score=28.73  Aligned_cols=28  Identities=14%  Similarity=0.303  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      +|...+.++...|+  ++++++++.++|.+
T Consensus         1 al~~Lg~~~~~~g~--~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGD--YEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence            35566666666766  77777777774443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=89.80  E-value=2.2  Score=28.71  Aligned_cols=31  Identities=10%  Similarity=0.124  Sum_probs=14.3

Q ss_pred             HHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284           94 ETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR  125 (284)
Q Consensus        94 ~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~  125 (284)
                      ..+| ++.+++.+++.+|+.+|.|-+|-.-+.
T Consensus        12 ykl~-~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen   12 YKLG-EYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHTT--HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHhh-hHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3344 355555555555555555555544333

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.46  E-value=38  Score=37.44  Aligned_cols=143  Identities=11%  Similarity=0.051  Sum_probs=90.6

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hCCCcH----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAIC-LNPGNY----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK  116 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~-lnP~~~----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk  116 (284)
                      +.-+|+..-.|-.|-+...+..--++|-+..++||. +|+.--    -+|..--.+....| .-+.-.+.|++|.+. -.
T Consensus      1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~kVFeRAcqy-cd 1528 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKKVFERACQY-CD 1528 (1710)
T ss_pred             HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHHHHHHHHHh-cc
Confidence            345666666665554544444444777777777774 566433    34443333333344 223334455555443 34


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      -|.+..+..-++....+  +++|.++++.+++.--.--..|...+..+.+-+.-+.|-....+|++--|+..
T Consensus      1529 ~~~V~~~L~~iy~k~ek--~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEK--NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             hHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence            56777777777777777  78888888888888777778888777777766666667777788888777743

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.37  E-value=10  Score=34.69  Aligned_cols=119  Identities=19%  Similarity=0.083  Sum_probs=88.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH--HHH---HHHHHHHhCCCCH
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL--WHH---RRWVAEKLGTGAV  136 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a--W~h---R~~ll~~l~~~~~  136 (284)
                      .+...+|..++..++...|++..+-.-...++...| +.+.+...    |...|-..+.  |.-   |-.++.+...   
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g-~~e~A~~i----L~~lP~~~~~~~~~~l~a~i~ll~qaa~---  218 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAG-DVEAAQAI----LAALPLQAQDKAAHGLQAQIELLEQAAA---  218 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC-ChHHHHHH----HHhCcccchhhHHHHHHHHHHHHHHHhc---
Confidence            455578999999999999999999999999999988 47666554    4444444332  222   3344444432   


Q ss_pred             HHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          137 NKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       137 ~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      ..+..-+.+.+..||.|..+=+-.+..+...|+.++|++-.-.+++.|-...
T Consensus       219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~  270 (304)
T COG3118         219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE  270 (304)
T ss_pred             CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            2355667888899999999999999999999999999988888887775543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=88.47  E-value=5.7  Score=31.01  Aligned_cols=56  Identities=11%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             CHHHHHHHHHHHHhCCCcHHHHH---HHHHHHHHhhh----------CHHHHHHHHHHHHHhCCCChHH
Q 023284           65 SSRSFQLTKEAICLNPGNYTVWH---FRRQIIETLHT----------DLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        65 s~~aL~~~~~~L~lnP~~~~aW~---~R~~~L~~l~~----------~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      .-+||++.+.++..++++..+|.   ..|.++..+..          -+..+++++.++....|.....
T Consensus        12 hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~   80 (111)
T PF04781_consen   12 HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS   80 (111)
T ss_pred             HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence            36788888888888887775543   33455544431          1334555555555555555333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.30  E-value=9.2  Score=34.25  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH---HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284          153 NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA---WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE  229 (284)
Q Consensus       153 N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA---W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne  229 (284)
                      -..-|+..|..--+-|+|++|...++.+...+|...-+   ..-.+.+..+-+.       ++.++..+++.|+++|+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~-------y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE-------YDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc-------HHHHHHHHHHHHHhCCCCC
Confidence            34678888888888999999999999999999987644   1112222233333       4778999999999999998


Q ss_pred             c--HHHHHHHHH
Q 023284          230 S--PWRYLRGLY  239 (284)
Q Consensus       230 s--aW~y~~~ll  239 (284)
                      .  --.|++|+.
T Consensus       106 n~dY~~YlkgLs  117 (254)
T COG4105         106 NADYAYYLKGLS  117 (254)
T ss_pred             ChhHHHHHHHHH
Confidence            7  223666665

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=87.67  E-value=1.5  Score=40.47  Aligned_cols=86  Identities=8%  Similarity=0.089  Sum_probs=62.1

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           71 LTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH-RRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        71 ~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h-R~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      .+-++-...|.+.+.|..-.......+ .+.+--..|..+++.+|.|...|-+ -..=+...++  ++.+.+.+.+.|..
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k-~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~an--i~s~Ra~f~~glR~  171 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKK-MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIAN--IESSRAMFLKGLRM  171 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhcc--HHHHHHHHHhhhcc
Confidence            344455567888888877766666666 4777777888888888888888876 3444445555  77788888888888


Q ss_pred             CcCChhHHhH
Q 023284          150 DAKNYHAWSY  159 (284)
Q Consensus       150 dpkN~~AW~~  159 (284)
                      +|++...|.-
T Consensus       172 N~~~p~iw~e  181 (435)
T COG5191         172 NSRSPRIWIE  181 (435)
T ss_pred             CCCCchHHHH
Confidence            8888888853

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=87.32  E-value=5.6  Score=31.07  Aligned_cols=87  Identities=9%  Similarity=0.079  Sum_probs=58.9

Q ss_pred             hhhCHHHHHHHHHHHHHhCCCChHHHHH---HHHHHHHhCCC---------CHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284           96 LHTDLQDELAFVGRIAKSNSKNYQLWHH---RRWVAEKLGTG---------AVNKELQFTKKMLSLDAKNYHAWSYRQWV  163 (284)
Q Consensus        96 l~~~~~~eL~~~~~~l~~~pkn~~aW~h---R~~ll~~l~~~---------~~~eel~~~~~aL~~dpkN~~AW~~r~~v  163 (284)
                      -| +.-+||+.++.++..++++-.+|.+   .|.++..+...         -+..+++++.++..+.|...+..+..+.=
T Consensus         9 rG-nhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~   87 (111)
T PF04781_consen    9 RG-NHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ   87 (111)
T ss_pred             cc-CHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence            35 5778999999999999988877644   35666555421         15567888888888888876666665544


Q ss_pred             HHHccCcHHHHHHHHHHHhc
Q 023284          164 LQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       164 l~~l~~~~eeL~~~~~~l~~  183 (284)
                      +..-.-|++++.-+.++|.+
T Consensus        88 l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   88 LGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hhhHHHHHHHHHHHHHHhcc
Confidence            44344466677666666654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.04  E-value=3.8  Score=36.98  Aligned_cols=63  Identities=14%  Similarity=0.118  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      ++.++.+.++.+.++|.+...|--||.++.+++.+.-|++.+...++.-|++..+-.-|..+.
T Consensus       197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            788899999999999999999999999999999999999999999999999988877665543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=86.88  E-value=29  Score=33.00  Aligned_cols=78  Identities=8%  Similarity=0.081  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHH---hhhCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCc
Q 023284           83 YTVWHFRRQIIET---LHTDLQDELAFVGR-IAKSNSKNYQLWHHRRWVAEKLG-------TGAVNKELQFTKKMLSLDA  151 (284)
Q Consensus        83 ~~aW~~R~~~L~~---l~~~~~~eL~~~~~-~l~~~pkn~~aW~hR~~ll~~l~-------~~~~~eel~~~~~aL~~dp  151 (284)
                      ..+=+..+.+|.+   -| +.++|+..+.. +....+.+...+.-.|.+++.+-       .+.+++++..|.++.+++|
T Consensus       179 ~~i~~~yafALnRrn~~g-dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  179 HNIKFQYAFALNRRNKPG-DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             hHHHHHHHHHHhhcccCC-CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            3333444444444   34 56777777777 44566677777777676666541       1236777777777777776


Q ss_pred             CChhHHhHHH
Q 023284          152 KNYHAWSYRQ  161 (284)
Q Consensus       152 kN~~AW~~r~  161 (284)
                      .-|++-|.-.
T Consensus       258 ~~Y~GIN~At  267 (374)
T PF13281_consen  258 DYYSGINAAT  267 (374)
T ss_pred             cccchHHHHH
Confidence            5555555543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=86.44  E-value=4.8  Score=36.37  Aligned_cols=60  Identities=15%  Similarity=0.070  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284          100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ  161 (284)
Q Consensus       100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~  161 (284)
                      ++.++.+.++++..+|++.--|.-||.++.++|-  +.-|++.+...++.-|....|=.-|.
T Consensus       197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c--~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC--YHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC--chhhHHHHHHHHHhCCCchHHHHHHH
Confidence            5555555566666666665555556666665555  55555555555555555554444433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=84.60  E-value=3.6  Score=30.69  Aligned_cols=50  Identities=20%  Similarity=0.163  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                      ..++-+.+.++.+|.|..+-+..+..+..-|++++|++-+-.++..++..
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            35667788888888888888888888888888888888888888888776

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=84.40  E-value=9.7  Score=36.71  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=43.6

Q ss_pred             HhHHHHHHHHccCcHHHHHHHHHHHhcc------CCChHHHHHHHHHHhcCCCCc-------------hhhhhHHHHHHH
Q 023284          157 WSYRQWVLQALGGWEDELDYCQMLLGED------IFNNSAWNQRYFVVTRSPLLG-------------GLIAMRDSEVNF  217 (284)
Q Consensus       157 W~~r~~vl~~l~~~~eeL~~~~~~l~~d------p~n~sAW~~r~~ll~~l~~~~-------------~~~~~~~~el~~  217 (284)
                      =.+.|..+.-+|.|++|+-|+.+-|.+-      +.-..|+++.|.+...-|+.-             +...-++.++++
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f  177 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF  177 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence            3456778888888899988888776542      444567777777665433321             122335667777


Q ss_pred             HHHHHhcC
Q 023284          218 TIEAILGN  225 (284)
Q Consensus       218 ~~~~i~~~  225 (284)
                      |..-|++-
T Consensus       178 y~eNL~l~  185 (639)
T KOG1130|consen  178 YMENLELS  185 (639)
T ss_pred             HHHHHHHH
Confidence            77766543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=82.02  E-value=25  Score=35.25  Aligned_cols=120  Identities=11%  Similarity=-0.102  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHH--HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284           68 SFQLTKEAICLNPGNYTVWHFR--RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK  145 (284)
Q Consensus        68 aL~~~~~~L~lnP~~~~aW~~R--~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~  145 (284)
                      ++..+..-+.++|.+.+...-.  ...+..++. -..+.-....++..||.+..+-..-+..+...|. ...-...+...
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~-~~~~~~~~~~~  127 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLAD-STLAFLAKRIPLSVNPENCPAVQNLAAALELDGL-QFLALADISEI  127 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhcccccc-chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh-HHHHHHHHHHH
Confidence            4445555556888888876544  333334453 3356666689999999999999999888887664 24455567777


Q ss_pred             HHHhCcCChhHHhHH------HHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          146 MLSLDAKNYHAWSYR------QWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       146 aL~~dpkN~~AW~~r------~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      +...-|+|...-.|+      +.++.-+++-.++.....++.+..|.+..
T Consensus       128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~  177 (620)
T COG3914         128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR  177 (620)
T ss_pred             HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999      66666777777777777788777777743

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=81.63  E-value=8.7  Score=34.17  Aligned_cols=64  Identities=11%  Similarity=0.090  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      .+.+.+.++++|++-|.....|+..+..-.+-|.++.|...+.+++++||.+.-+-..|-.++.
T Consensus        11 ~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg   74 (287)
T COG4976          11 AEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLG   74 (287)
T ss_pred             hHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhc
Confidence            5667788888888888888888888888888888888888888888888888776655544443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=81.31  E-value=6.4  Score=34.78  Aligned_cols=61  Identities=10%  Similarity=0.019  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284          104 LAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA  166 (284)
Q Consensus       104 L~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~  166 (284)
                      ..+|.+|+...|.+-..+++.+.+...-|+  .-.++-+|-+++-...-...|..+...++.+
T Consensus         2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~--~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    2 ERYYRKAIRLLPSNGNPYNQLAVLASYQGD--DLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHH-TTBSHHHHHHHHHHHHTT---HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcccchhhhhccccc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            445555555555555555555555555444  4444444444444333334444444444443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=81.06  E-value=33  Score=36.60  Aligned_cols=131  Identities=13%  Similarity=0.082  Sum_probs=97.8

Q ss_pred             CCCHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhh------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 023284           63 ERSSRSFQLTKEAICLNPG---NYTVWHFRRQIIETLH------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT  133 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~---~~~aW~~R~~~L~~l~------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~  133 (284)
                      ..+++|+..|.++-.-.|.   -++|-+.-|..+....      ..+.+||.-|+++ .--|.-+--+..+..+++.+|.
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  567 (932)
T PRK13184        489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGE  567 (932)
T ss_pred             HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhh
Confidence            4458899999999988875   5677777777664421      2466777766653 4456777778889999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-----cHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          134 GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-----WEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       134 ~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-----~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                        +++|+.|+..++++.|.....---|--++.++..     -..++.+.--++..-|.....=+-+.+
T Consensus       568 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (932)
T PRK13184        568 --YNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKF  633 (932)
T ss_pred             --HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHH
Confidence              9999999999999999998877777666666542     246778888888888888776665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
1jcq_A	382	Crystal Structure Of Human Protein Farnesyltransfer		2e-61
2f0y_A	379	Crystal Structure Of Human Protein Farnesyltransfer		2e-61
1n95_A	315	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		6e-61
1qbq_A	333	Structure Of Rat Farnesyl Protein Transferase Compl		7e-61
1nl4_A	312	Crystal Structure Of Rat Farnesyl Transferase In Co		7e-61
2r2l_A	315	Structure Of Farnesyl Protein Transferase Bound To		8e-61
2bed_A	313	Structure Of Fpt Bound To Inhibitor Sch207736 Lengt		8e-61
1o5m_A	377	Structure Of Fpt Bound To The Inhibitor Sch66336 Le		9e-61
1o1r_A	380	Structure Of Fpt Bound To Ggpp Length = 380		9e-61
1ft2_A	315	Co-Crystal Structure Of Protein Farnesyltransferase		1e-60
1ft1_A	377	Crystal Structure Of Protein Farnesyltransferase At		1e-60
3pz4_A	379	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		2e-60
3q73_A	349	Cryptococcus Neoformans Protein Farnesyltransferase		3e-45
3sfx_A	349	Cryptococcus Neoformans Protein Farnesyltransferase		3e-45
3dra_A	306	Candida Albicans Protein Geranylgeranyltransferase-		8e-29
4ehm_A	330	Rabggtase In Complex With Covalently Bound Psoromic		3e-14
3dss_A	331	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		3e-14
3c72_A	334	Engineered Rabggtase In Complex With A Peptidomimet		3e-14
3pz1_A	332	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		3e-14
1dce_A	567	Crystal Structure Of Rab Geranylgeranyltransferase		2e-13
1ltx_A	567	Structure Of Rab Escort Protein-1 In Complex With R		2e-13

>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 382

Iteration: 1
 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 69  RAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 186
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 247 TTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And Hydantoin Derivative Length = 379

Iteration: 1
 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 69  RAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 186
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ 
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 247 TTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 315

Iteration: 1
 Score =  230 bits (587), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 15  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 74
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 75  ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 132
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 133 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 192
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 193 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232

>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic Acid Length = 333

Iteration: 1
 Score =  230 bits (586), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 25  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 84
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 85  ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 142
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 143 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 202
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 203 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 242

>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 312

Iteration: 1
 Score =  230 bits (586), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 15  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 74
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 75  ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 132
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 133 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 192
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 193 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232

>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93 Length = 315

Iteration: 1
 Score =  230 bits (586), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 16  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 75
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 76  ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 133
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 134 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 193
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 194 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 233

>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736 Length = 313

Iteration: 1
 Score =  230 bits (586), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 16  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 75
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 76  ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 133
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 134 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 193
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 194 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 233

>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336 Length = 377

Iteration: 1
 Score =  229 bits (585), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 69  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 129 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 186
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 246
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 247 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp Length = 380

Iteration: 1
 Score =  229 bits (585), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 72  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 131
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 132 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 189
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 190 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 249
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 250 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 289

>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 315

Iteration: 1
 Score =  229 bits (585), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 15  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 74
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 75  ANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 132
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 133 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 192
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 193 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232

>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 377

Iteration: 1
 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 69  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 129 ANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 186
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 246
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 247 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 379

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN 
Sbjct: 71  RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 130
Query: 81  GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
            NYTVWHFRR ++ +L  DLQ+E+ ++  I +   KNYQ+WHHRR + E L   +  +EL
Sbjct: 131 ANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 188
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
           +F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ 
Sbjct: 189 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 248
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 249 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 288

>pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 349

Iteration: 1
 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/235 (39%), Positives = 135/235 (57%), Gaps = 12/235 (5%)
Query: 16  LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEA 75
           +P+SQR  W+DV PI QDDGPNPVVPI Y  E+ + M YFRA+   +E+S R+ +LT+  
Sbjct: 21  IPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEII 80
Query: 76  ICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA 135
           + +NP +YTVW +R  ++ +L+  L+DEL  +   A  N K+YQ+WHHR  + +++    
Sbjct: 81  VRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD 140
Query: 136 VNKELQFTKKMLSLDAKNYHAWSYRQWV---LQALG-----GWEDELDYCQMLLGEDIFN 187
              E+++    L  D KNYH W+Y  W+      LG      W  ELD+C  +L  D  N
Sbjct: 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN 200
Query: 188 NSAWNQRYFVVTRSPLLGGLIAMRD--SEVNFTIEAILGNPENESPWRYLRGLYK 240
           NSAW  R+++    P  G   + R    E+ + +++I   P N S W YLRG  K
Sbjct: 201 NSAWGWRWYLRVSRP--GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253

>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In Complex With Fpt-Ii And Tipifarnib Length = 349

Iteration: 1
 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/235 (39%), Positives = 135/235 (57%), Gaps = 12/235 (5%)
Query: 16  LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEA 75
           +P+SQR  W+DV PI QDDGPNPVVPI Y  E+ + M YFRA+   +E+S R+ +LT+  
Sbjct: 20  IPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEII 79
Query: 76  ICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA 135
           + +NP +YTVW +R  ++ +L+  L+DEL  +   A  N K+YQ+WHHR  + +++    
Sbjct: 80  VRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD 139
Query: 136 VNKELQFTKKMLSLDAKNYHAWSYRQWV---LQALG-----GWEDELDYCQMLLGEDIFN 187
              E+++    L  D KNYH W+Y  W+      LG      W  ELD+C  +L  D  N
Sbjct: 140 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN 199
Query: 188 NSAWNQRYFVVTRSPLLGGLIAMRD--SEVNFTIEAILGNPENESPWRYLRGLYK 240
           NSAW  R+++    P  G   + R    E+ + +++I   P N S W YLRG  K
Sbjct: 200 NSAWGWRWYLRVSRP--GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 252

>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 306

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 23  EWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN 82
           ++SD+TP+  +     +  I Y  ++ + M    A+  ++E S R+  +T+  I     +
Sbjct: 7   DYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASH 66
Query: 83  YTVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN---- 137
           YT+W +R  I++ L + +L DEL +   IA  N KNYQ+W++R+ +  ++     N    
Sbjct: 67  YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126
Query: 138 -KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWED--ELDYCQMLLGEDIFNNSAWNQR 194
            +E    + MLS D KN+H WSYR+W++       D  EL +   ++  D+ NNSAW+ R
Sbjct: 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR 186
Query: 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240
           +F++     L     + D E+N+  + I+  P+N S W YL G+++
Sbjct: 187 FFLLFSKKHLATDNTI-DEELNYVKDKIVKCPQNPSTWNYLLGIHE 231

>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid Length = 330

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 35/226 (15%)
Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
            +LT + +  NP   T+W+ RR++++ L T+         ++ EL F+    + N K+Y 
Sbjct: 49  LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
            WHHR W+  +L      +EL+   + L  D +N+H W YR++   QA     +EL +  
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
            L+  +  N S+W+       RS LL  L    DS             E+     A   +
Sbjct: 169 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 226 PENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271
           P ++S W Y R L            R  LSV +S   Q +L  C E
Sbjct: 223 PNDQSAWFYHRWLLG------AGSGRCELSVEKSTVLQSELESCKE 262

>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) Length = 331

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 35/226 (15%)
Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
            +LT + +  NP   T+W+ RR++++ L T+         ++ EL F+    + N K+Y 
Sbjct: 50  LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 109
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
            WHHR W+  +L      +EL+   + L  D +N+H W YR++   QA     +EL +  
Sbjct: 110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
            L+  +  N S+W+       RS LL  L    DS             E+     A   +
Sbjct: 170 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223
Query: 226 PENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271
           P ++S W Y R L            R  LSV +S   Q +L  C E
Sbjct: 224 PNDQSAWFYHRWLLG------AGSGRCELSVEKSTVLQSELESCKE 263

>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor Length = 334

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 35/226 (15%)
Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
            +LT + +  NP   T+W+ RR++++ L T+         ++ EL F+    + N K+Y 
Sbjct: 53  LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 112
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
            WHHR W+  +L      +EL+   + L  D +N+H W YR++   QA     +EL +  
Sbjct: 113 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 172
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
            L+  +  N S+W+       RS LL  L    DS             E+     A   +
Sbjct: 173 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 226
Query: 226 PENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271
           P ++S W Y R L            R  LSV +S   Q +L  C E
Sbjct: 227 PNDQSAWFYHRWLLG------AGSGRCELSVEKSTVLQSELESCKE 266

>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 332

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 35/226 (15%)
Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
            +LT + +  NP   T+W+ RR++++ L T+         ++ EL F+    + N K+Y 
Sbjct: 51  LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 110
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
            WHHR W+  +L      +EL+   + L  D +N+H W YR++   QA     +EL +  
Sbjct: 111 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 170
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
            L+  +  N S+W+       RS LL  L    DS             E+     A   +
Sbjct: 171 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 224
Query: 226 PENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271
           P ++S W Y R L    +       R  LSV +S   Q +L  C E
Sbjct: 225 PNDQSAWFYHRWLLGAGS------GRCELSVEKSTVLQSELESCKE 264

>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 567

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
            +LT + +  NP   T+W+ RR++++ L T+         ++ EL F+    + N K+Y 
Sbjct: 49  LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
            WHHR W+  +L      +EL+   + L  D +N+H W YR++   QA     +EL +  
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
            L+  +  N S+W+       RS LL  L    DS             E+     A   +
Sbjct: 169 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 226 PENESPWRYLRGL 238
           P ++S W Y R L
Sbjct: 223 PNDQSAWFYHRWL 235

>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 567

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
            +LT + +  NP   T+W+ RR++++ L T+         ++ EL F+    + N K+Y 
Sbjct: 49  LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
            WHHR W+  +L      +EL+   + L  D +N+H W YR++   QA     +EL +  
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
            L+  +  N S+W+       RS LL  L    DS             E+     A   +
Sbjct: 169 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 226 PENESPWRYLRGL 238
           P ++S W Y R L
Sbjct: 223 PNDQSAWFYHRWL 235

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	3e-82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	3e-12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	8e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-77
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-17
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	5e-77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-30
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	1e-60
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349

 Score =  250 bits (639), Expect = 3e-82
 Identities = 88/248 (35%), Positives = 133/248 (53%), Gaps = 8/248 (3%)

Query: 7   DEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSS 66
            +    +  +P+SQR  W+DV PI QDDGPNPVVPI Y  E+ + M YFRA+   +E+S 
Sbjct: 12  QDLMVTSTYIPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSE 71

Query: 67  RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRW 126
           R+ +LT+  + +NP +YTVW +R  ++ +L+  L+DEL  +   A  N K+YQ+WHHR  
Sbjct: 72  RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131

Query: 127 VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG--------WEDELDYCQ 178
           + +++       E+++    L  D KNYH W+Y  W+              W  ELD+C 
Sbjct: 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191

Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL 238
            +L  D  NNSAW  R+++    P           E+ + +++I   P N S W YLRG 
Sbjct: 192 EMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF 251

Query: 239 YKDDTESW 246
            K  +   
Sbjct: 252 LKHFSLPL 259

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349

 Score = 64.9 bits (157), Expect = 3e-12
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 12/141 (8%)

Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETL-------HTDLQDELAFVGRIAKSNSKNYQLW 121
            +    ++  +P NY  W +   +                 EL +   + + + +N   W
Sbjct: 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAW 204

Query: 122 HHRRWVAEKLGTGA-----VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDY 176
             R ++             +  EL +  K + L   N  AW+Y +  L+        +  
Sbjct: 205 GWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILP 264

Query: 177 CQMLLGEDIFNNSAWNQRYFV 197
             +       N        F 
Sbjct: 265 AILPYTASKLNPDIETVEAFG 285

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349

 Score = 48.7 bits (115), Expect = 8e-07
 Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 6/119 (5%)

Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTD------LQDELAFVGRIAKSNSKNYQLWH 122
                E + ++  N + W +R  +  +          LQDEL ++ +       N   W+
Sbjct: 187 LDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWN 246

Query: 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLL 181
           + R   +      V           S    +        + + +    ED      + L
Sbjct: 247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  238 bits (608), Expect = 4e-77
 Identities = 111/240 (46%), Positives = 154/240 (64%), Gaps = 3/240 (1%)

Query: 2   ESDEGDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYS 61
             D+G         +    R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   
Sbjct: 50  PMDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQR 109

Query: 62  DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121
           DERS R+F+LT++AI LN  NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+W
Sbjct: 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169

Query: 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLL 181
           HHRR + E L     ++EL+F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL
Sbjct: 170 HHRRVLVEWL--RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227

Query: 182 GEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
            ED+ NNS WNQRYFV++ +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 228 KEDVRNNSVWNQRYFVISNTTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 79.0 bits (194), Expect = 6e-17
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 6/160 (3%)

Query: 42  IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ 101
           I  +P+  +   + R +       S+  +   + +  +  NY  W  R+ +I+       
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK-LWD 217

Query: 102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLG----TGAVNKELQFTKKMLSLDAKNYHAW 157
           +EL +V ++ K + +N  +W+ R +V            + +E+Q+T +M+ L   N  AW
Sbjct: 218 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW 277

Query: 158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV 197
           +Y + +LQ   G     +    LL     ++S +   + V
Sbjct: 278 NYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLV 316

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306

 Score =  235 bits (601), Expect = 5e-77
 Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 9/257 (3%)

Query: 21  RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
           + ++SD+TP+  +     +  I Y  ++ + M    A+  ++E S R+  +T+  I    
Sbjct: 5   KYDYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELA 64

Query: 81  GNYTVWHFRRQIIETLHT-DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN-- 137
            +YT+W +R  I++ L   +L DEL +   IA  N KNYQ+W++R+ +  ++     N  
Sbjct: 65  SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124

Query: 138 ---KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWED--ELDYCQMLLGEDIFNNSAWN 192
              +E    + MLS D KN+H WSYR+W++       D  EL +   ++  D+ NNSAW+
Sbjct: 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS 184

Query: 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM 252
            R+F++     L       D E+N+  + I+  P+N S W YL G+++    S       
Sbjct: 185 HRFFLLFSKKHLATD-NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEF 243

Query: 253 LLSVFESFEYQKQLCFC 269
            L   +  + Q    F 
Sbjct: 244 SLQFVDLEKDQVTSSFA 260

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  221 bits (565), Expect = 1e-68
 Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 18/254 (7%)

Query: 42  IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD-- 99
                 +            + E      +LT + +  NP   T+W+ RR++++ L T+  
Sbjct: 22  EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS 81

Query: 100 -------LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK 152
                  ++ EL F+    + N K+Y  WHHR W+  +L      +EL+   + L  D +
Sbjct: 82  PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141

Query: 153 NYHAWSYRQWVLQALGGW-EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGL---- 207
           N+H W YR++V         +EL +   L+  +  N S+W+ R  ++ +           
Sbjct: 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201

Query: 208 ---IAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQK 264
                +   E+     A   +P ++S W Y R L     E       + +S  E+     
Sbjct: 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL-GRAEPHDVLCCVHVSREEACLSVC 260

Query: 265 QLCFCSEHTFRSYL 278
                +  +    L
Sbjct: 261 FSRPLTVGSRMGTL 274

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  118 bits (297), Expect = 2e-30
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 16/191 (8%)

Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKNYQLWHHRRWV 127
               +  + +NP +Y  WH R  ++  L   +   EL    R  +++ +N+  W +RR+V
Sbjct: 93  LGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV 152

Query: 128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG--------------WEDE 173
           A +       +EL FT  +++ +  NY +W YR  +L  L                   E
Sbjct: 153 AAQAAVAP-AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211

Query: 174 LDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWR 233
           L+  Q     D  + SAW    +++ R+     L  +  S     +      P       
Sbjct: 212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271

Query: 234 YLRGLYKDDTE 244
               L  D+  
Sbjct: 272 GTLLLMVDEAP 282

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 21/217 (9%)

Query: 69  FQLTKEAICLNPGNYTVWHFRRQIIETLHTD-------------LQDELAFVGRIAKSNS 115
              T   I  N  NY+ WH+R  ++  LH               L  EL  V     ++ 
Sbjct: 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223

Query: 116 KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELD 175
            +   W + RW+  +    A   ++     +   +A     +S    V   +G     +D
Sbjct: 224 NDQSAWFYHRWLLGR----AEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVD 279

Query: 176 YCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYL 235
              + +     +      R   V    L    +  +  +  F +     + + E      
Sbjct: 280 EAPLSVEWRTPDG---RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKD 336

Query: 236 RGLYKDDTESWINDPRML-LSVFESFEYQKQLCFCSE 271
           R        +         LSV +S   Q +L  C E
Sbjct: 337 RPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKE 373

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* Length = 331

 Score =  194 bits (494), Expect = 1e-60
 Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 17/242 (7%)

Query: 42  IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD-- 99
                 +            + E      +LT + +  NP   T+W+ RR++++ L T+  
Sbjct: 23  EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS 82

Query: 100 -------LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK 152
                  ++ EL F+    + N K+Y  WHHR W+  +L      +EL+   + L  D +
Sbjct: 83  PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 142

Query: 153 NYHAWSYRQWVLQALGGW-EDELDYCQMLLGEDIFNNSAWNQRYFVVTR-------SPLL 204
           N+H W YR++V         +EL +   L+  +  N S+W+ R  ++ +        P  
Sbjct: 143 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 202

Query: 205 GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQK 264
                +   E+     A   +P ++S W Y R L    +            +    E  K
Sbjct: 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262

Query: 265 QL 266
           +L
Sbjct: 263 EL 264

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 21/154 (13%), Positives = 38/154 (24%), Gaps = 3/154 (1%)

Query: 41  PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDL 100
           P+         ++    V   +   +    LT   + L P             + L   +
Sbjct: 30  PLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQAL-ETV 88

Query: 101 QDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR 160
           Q  L  + +      +            + L T  V + L    +   L  +   A +  
Sbjct: 89  QRLLPVLCQAHGLTPQQVVAIASHDGGKQALET--VQRLLPVLCQAHGLTPEQVVAIASH 146

Query: 161 QWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194
               QAL   +  L       G       A    
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 23/154 (14%), Positives = 39/154 (25%), Gaps = 3/154 (1%)

Query: 41  PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDL 100
           P+   PE    ++       + E   R   +  +A  L P    V        +     +
Sbjct: 64  PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-QQVVAIASHDGGKQALETV 122

Query: 101 QDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR 160
           Q  L  + +      +            + L T  V   L    +   L  +   A +  
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALET--VQALLPVLCQAHGLTPEQVVAIASN 180

Query: 161 QWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194
               QAL   +  L       G       A    
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 18/138 (13%), Positives = 35/138 (25%), Gaps = 4/138 (2%)

Query: 42  IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ 101
               P+    ++       + E   R   +  +A  L P             + L   +Q
Sbjct: 337 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQAL-ETVQ 395

Query: 102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161
             L  + +      +            + L T  V + L    +   L  +   A +   
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALET--VQRLLPVLCQAHGLTPQQVVAIASNG 453

Query: 162 WVLQALGGWEDEL-DYCQ 178
               AL     +L     
Sbjct: 454 GGRPALESIVAQLSRPDP 471

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 7e-06
 Identities = 21/153 (13%), Positives = 37/153 (24%), Gaps = 3/153 (1%)

Query: 42  IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ 101
               P+    ++       + E   R   +  +A  L P +  V        +     +Q
Sbjct: 253 HGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP-DQVVAIASHGGGKQALETVQ 311

Query: 102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161
             L  + +                   + L T  V + L    +   L      A +   
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALET--VQRLLPVLCQAHGLTPDQVVAIASNG 369

Query: 162 WVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194
              QAL   +  L       G       A    
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 402

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 4/140 (2%)

Query: 42  IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ 101
               P+    ++       + E   R   +  +A  L      V        +     +Q
Sbjct: 558 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ-VQVVAIASNIGGKQALETVQ 616

Query: 102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161
             L  + +                   + L T  V + L    +   L      A +   
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALET--VQRLLPVLCQAHGLTPDQVVAIASNG 674

Query: 162 WVLQALGGWED-ELDYCQML 180
              QAL   +      CQ  
Sbjct: 675 GGKQALETVQRLLPVLCQAH 694

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 20/154 (12%), Positives = 36/154 (23%), Gaps = 3/154 (1%)

Query: 41  PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDL 100
           P+         ++    V   +   +    LT   + L P             + L   +
Sbjct: 150 PLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQAL-ETV 208

Query: 101 QDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR 160
           Q  L  + +                   + L T  + + L    +   L      A +  
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALET--MQRLLPVLCQAHGLPPDQVVAIASN 266

Query: 161 QWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194
               QAL   +  L       G       A    
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASH 300

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 19/138 (13%), Positives = 34/138 (24%), Gaps = 5/138 (3%)

Query: 42  IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ 101
               P+    ++       + E   R   +  +A  L P +  V        +     +Q
Sbjct: 321 HGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-DQVVAIASNGGGKQALETVQ 379

Query: 102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161
             L  + +                    K     V + L    +   L      A +   
Sbjct: 380 RLLPVLCQAHGLTPDQVVAIASN---GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD 436

Query: 162 WVLQALGGWED-ELDYCQ 178
              QAL   +      CQ
Sbjct: 437 GGKQALETVQRLLPVLCQ 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	100.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	100.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	100.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	100.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	100.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	100.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	100.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.84
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.82
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.8
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.79
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.79
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.78
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.77
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.77
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.76
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.75
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.74
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.74
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.73
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.72
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.72
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.71
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.71
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.7
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.65
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.64
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.62
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.6
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.59
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.57
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.57
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.57
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.57
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.54
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.54
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.53
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.51
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.5
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.5
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.5
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.48
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.47
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.47
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.47
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.46
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.46
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.45
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.45
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.44
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.44
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.42
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.41
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.4
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.4
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.39
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.39
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.39
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.37
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.37
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.37
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.36
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.35
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.35
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.35
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.35
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.33
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.32
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.3
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.3
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.29
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.29
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.29
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.26
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.26
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.23
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.2
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.18
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.18
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.16
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.14
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.13
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.06
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.03
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.01
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.99
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.96
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.91
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.9
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.89
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.88
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.88
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.84
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.84
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.83
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.8
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.77
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.57
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.56
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.45
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.44
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.39
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.26
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.13
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.02
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.0
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.97
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.96
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.94
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.89
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.85
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.71
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.47
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.35
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.77
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.7
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.59
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.52
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.19
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.99
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.84
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.68
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.66
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.45
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.4
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	85.3
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	81.27

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=100.00  E-value=8.2e-59  Score=430.30  Aligned_cols=233  Identities=37%  Similarity=0.725  Sum_probs=221.2

Q ss_pred             hccccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHH
Q 023284           11 QEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRR   90 (284)
Q Consensus        11 ~~~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~   90 (284)
                      -.++++||++||+|+||+||||++|++|||+|.|+|+|.++|+++|+++.+++++++||++|+++|.+||+++++|++||
T Consensus        16 ~~~~~~~~~~~~~w~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~   95 (349)
T 3q7a_A           16 VTSTYIPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRF   95 (349)
T ss_dssp             ---CCCCTTSCGGGTTCCCCCCCCCSSCSSCBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccCCccCcccCcccCCCcccCCCCCCCCeeeeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284           91 QIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL-G-TGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG  168 (284)
Q Consensus        91 ~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l-~-~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~  168 (284)
                      .+|..++..+++||++++.+|..+||||++|+||+|++..+ + .  +++||++++++|++||+|++||+||+|++.+++
T Consensus        96 ~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~--~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~  173 (349)
T 3q7a_A           96 SLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD--PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS  173 (349)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC--CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            99999997799999999999999999999999999999999 7 6  899999999999999999999999999999999


Q ss_pred             CcH--------HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          169 GWE--------DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       169 ~~~--------eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                      .++        +|+++++++|+.||+|+|||+||++++.++++......++++|+++++++|.++|+|+|+|+|+++++.
T Consensus       174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~  253 (349)
T 3q7a_A          174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK  253 (349)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            988        999999999999999999999999999999875434456899999999999999999999999999999


Q ss_pred             cCCcc
Q 023284          241 DDTES  245 (284)
Q Consensus       241 ~~~~~  245 (284)
                      +.+.+
T Consensus       254 ~~~~~  258 (349)
T 3q7a_A          254 HFSLP  258 (349)
T ss_dssp             HTTCC
T ss_pred             hcCCC
Confidence            88776

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=2e-55  Score=402.10  Aligned_cols=225  Identities=31%  Similarity=0.576  Sum_probs=212.6

Q ss_pred             CCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-h
Q 023284           20 QRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-T   98 (284)
Q Consensus        20 ~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-~   98 (284)
                      .+|+|+||+|||+++|++|||+|.|+++|.++++++++++.+++++++||++|+++|.+||+++|||++||.+|..++ .
T Consensus         4 ~~~~~~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~   83 (306)
T 3dra_A            4 SKYDYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNR   83 (306)
T ss_dssp             CSSCCTTCCCCCCCCSSCCTTCCCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTS
T ss_pred             CCCCCCCCeecCCCCCCCCceeeeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccc
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999999 6


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHH----HHh---CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVA----EKL---GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE  171 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll----~~l---~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~  171 (284)
                      .+++||++++.+|..+||+|++|+||++++    ..+   +.  +++|+++++++|++||+|||||+||+|++.+++.++
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~--~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~  161 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD--PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHN  161 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC--THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC
Confidence            799999999999999999999999999999    666   55  899999999999999999999999999999999998


Q ss_pred             --HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCC
Q 023284          172 --DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWI  247 (284)
Q Consensus       172 --eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~  247 (284)
                        +|+++++++|+.||+|+|||+||++++.++++... ..++++|+++++++|.++|+|+|+|+|+++++.+.++.+.
T Consensus       162 ~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~-~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~  238 (306)
T 3dra_A          162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT-DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT  238 (306)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC-HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch-hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH
Confidence              99999999999999999999999999999875321 2357999999999999999999999999999999886543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=100.00  E-value=7.5e-44  Score=328.28  Aligned_cols=224  Identities=24%  Similarity=0.423  Sum_probs=197.7

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC---------HHHHHHHHHHHHHhCCCC
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKN  117 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~---------~~~eL~~~~~~l~~~pkn  117 (284)
                      .|..+++++++...+++++++||++|+++|.+||+++|||++||.+|..++..         +++||.+++.+|..+|||
T Consensus        28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn  107 (331)
T 3dss_A           28 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS  107 (331)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC
Confidence            56678889999999999999999999999999999999999999999998853         789999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-cHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-WEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      |++|+||+|++..++...+++|+++|+++|++||+|||||+||+|++..++. +++|+++++++|+.||+|+|||+||++
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~  187 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC  187 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            9999999999999985448999999999999999999999999999999999 599999999999999999999999999


Q ss_pred             HHhcCCCCch-------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc-c-C-----CCChhhHHHHHhhhhc
Q 023284          197 VVTRSPLLGG-------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE-S-W-----INDPRMLLSVFESFEY  262 (284)
Q Consensus       197 ll~~l~~~~~-------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~-~-~-----~~~~~~~~~~~~~~~~  262 (284)
                      ++..+....+       ....+++|+++++++|.++|+|+|+|+|+++++..... + +     ....+.+.+|.+.|+-
T Consensus       188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence            9988743211       12457999999999999999999999999999987622 1 1     2245777788888766


Q ss_pred             cccccccc
Q 023284          263 QKQLCFCS  270 (284)
Q Consensus       263 ~~~~~~~~  270 (284)
                      ..+-.||-
T Consensus       268 ~pd~~w~l  275 (331)
T 3dss_A          268 EPENKWCL  275 (331)
T ss_dssp             CTTCHHHH
T ss_pred             CcccchHH
Confidence            66668884

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=100.00  E-value=6.4e-42  Score=321.49  Aligned_cols=243  Identities=46%  Similarity=0.871  Sum_probs=225.5

Q ss_pred             hccccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHH
Q 023284           11 QEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRR   90 (284)
Q Consensus        11 ~~~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~   90 (284)
                      +.+++++|+++++|.||+|+++++|++|+++|.++|++.++|.+++.++.+.+++++|+++++++|.++|+++++|++||
T Consensus        59 ~~~~~~~y~~~~~w~di~~~~~~~~~~~~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g  138 (382)
T 2h6f_A           59 DSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR  138 (382)
T ss_dssp             TSTTCCCGGGCGGGTTSCCCCCCCCSSCSSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCccccccccCcccccCCCCCCCCCcCcchhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284           91 QIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW  170 (284)
Q Consensus        91 ~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~  170 (284)
                      .++..+|+++++|+.+++++|.++|+++.+|++||+++..+|+  +++|+.+++++|++||+|+++|++||+++..+|++
T Consensus       139 ~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~  216 (382)
T 2h6f_A          139 VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  216 (382)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence            9999999559999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCC
Q 023284          171 EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL-GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWIND  249 (284)
Q Consensus       171 ~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~-~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~  249 (284)
                      ++|+++++++|+++|+|.+||++||.++..++.. ++  +++++|+++++++|.++|++.++|+++++++...+  ..++
T Consensus       217 ~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e--A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g--~~~~  292 (382)
T 2h6f_A          217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR--AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG--LSKY  292 (382)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH--HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC--GGGC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC--ccch
Confidence            9999999999999999999999999999995443 32  34567789999999999999999999999998854  3456


Q ss_pred             hhhHHHHHhh
Q 023284          250 PRMLLSVFES  259 (284)
Q Consensus       250 ~~~~~~~~~~  259 (284)
                      ++++..+.+.
T Consensus       293 ~~a~~~~~~~  302 (382)
T 2h6f_A          293 PNLLNQLLDL  302 (382)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666655554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=100.00  E-value=2.7e-40  Score=324.95  Aligned_cols=201  Identities=24%  Similarity=0.463  Sum_probs=185.7

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC---------HHHHHHHHHHHHHhC
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSN  114 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~---------~~~eL~~~~~~l~~~  114 (284)
                      --..|..++++++++...++++++|+++|+++|.+||++|+||++||.++..++.+         +++||+++++++..+
T Consensus        24 k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~  103 (567)
T 1dce_A           24 KLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  103 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence            34678899999999999999999999999999999999999999999999999954         999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-CcHHHHHHHHHHHhccCCChHHHHH
Q 023284          115 SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDELDYCQMLLGEDIFNNSAWNQ  193 (284)
Q Consensus       115 pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-~~~eeL~~~~~~l~~dp~n~sAW~~  193 (284)
                      ||+|++|+||+|++.+++...+++|+++++++|++||+|+|||+||+|++.+++ .+++|+++++++|+.||+|+|||+|
T Consensus       104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~  183 (567)
T 1dce_A          104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  183 (567)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence            999999999999999999423799999999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHhcCCCCch-------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284          194 RYFVVTRSPLLGG-------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       194 r~~ll~~l~~~~~-------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                      |++++.++....+       ....+++|+++++++|.++|+|+|+|+|+++++...++
T Consensus       184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            9999988643311       12457999999999999999999999999999998765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=7.5e-39  Score=292.39  Aligned_cols=209  Identities=21%  Similarity=0.257  Sum_probs=177.0

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHhh--hCHHHHHHHHHHHH
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDE--RSSRSFQLTKEAICLNPGNYTVWHFRRQII----ETLH--TDLQDELAFVGRIA  111 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~--~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L----~~l~--~~~~~eL~~~~~~l  111 (284)
                      ..|.+||++.+||++||.++..++  ..+++|++++.+|.+||++|++|+|||++|    ..++  .++++||++++++|
T Consensus        58 ~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l  137 (306)
T 3dra_A           58 LGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML  137 (306)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred             HHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence            678999999999999999999988  779999999999999999999999999999    6662  36899999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhCcCChhHHhHHHHHHHHccC------cHHHHHHHHHHHhc
Q 023284          112 KSNSKNYQLWHHRRWVAEKLGTGAVN--KELQFTKKMLSLDAKNYHAWSYRQWVLQALGG------WEDELDYCQMLLGE  183 (284)
Q Consensus       112 ~~~pkn~~aW~hR~~ll~~l~~~~~~--eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~------~~eeL~~~~~~l~~  183 (284)
                      ..+||||++|+||+|++.++|.  ++  +|+++++++|++||+|+|||+||++++..++.      +++|+++++++|.+
T Consensus       138 ~~~pkny~aW~~R~~vl~~l~~--~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~  215 (306)
T 3dra_A          138 SSDPKNHHVWSYRKWLVDTFDL--HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK  215 (306)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhcc--cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence            9999999999999999999998  77  99999999999999999999999999999987      89999999999999


Q ss_pred             cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC---CCCccHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284          184 DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN---PENESPWRYLRGLYKDDTESWINDPRMLLSVFESF  260 (284)
Q Consensus       184 dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~---P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  260 (284)
                      +|+|.|||+|+++++.++++..      ++..+++.+++.++   |.+..+|.++.-++.+.    ++..+++.+|...+
T Consensus       216 ~p~n~SaW~y~~~ll~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~----~~~~~A~~~~~~l~  285 (306)
T 3dra_A          216 CPQNPSTWNYLLGIHERFDRSI------TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ----KKYNESRTVYDLLK  285 (306)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCCG------GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHhcCCCh------HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHH
Confidence            9999999999999999988742      11234555555444   55555666665555533    22345555555544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=100.00  E-value=8.8e-37  Score=281.14  Aligned_cols=197  Identities=24%  Similarity=0.403  Sum_probs=176.7

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHH
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDER----------SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVG  108 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~----------s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~  108 (284)
                      ..|.+||++++||++||.++...+.          .+++|.+++.+|..+|++|++|+||++++..++. .+++||.+++
T Consensus        55 ~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~  134 (331)
T 3dss_A           55 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA  134 (331)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred             HHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence            4688999999999999999987654          3689999999999999999999999999999985 4899999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc--------------cCcHHHH
Q 023284          109 RIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL--------------GGWEDEL  174 (284)
Q Consensus       109 ~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l--------------~~~~eeL  174 (284)
                      +++..+|+||+||+||+|++..+|. .+++|+++++++|+.||+|++||+||++++..+              +.+++|+
T Consensus       135 k~l~~dprNy~AW~~R~~vl~~l~~-~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEl  213 (331)
T 3dss_A          135 RFLEADERNFHCWDYRRFVAAQAAV-APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL  213 (331)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHH
Confidence            9999999999999999999999986 248999999999999999999999999999998              4589999


Q ss_pred             HHHHHHHhccCCChHHHHHHHHHHhcCCCCc----hhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284          175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLG----GLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY  239 (284)
Q Consensus       175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~----~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll  239 (284)
                      +++.++|.++|+|.|||+|+++++.+.....    ....++++|+++++++|+++|++  .|.++..++
T Consensus       214 e~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~  280 (331)
T 3dss_A          214 ELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIIL  280 (331)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHH
Confidence            9999999999999999998888887663211    12256899999999999999987  899887754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=100.00  E-value=2.8e-34  Score=265.85  Aligned_cols=163  Identities=24%  Similarity=0.409  Sum_probs=153.3

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-hhCHHHHHHHHHHHHHhCCCC
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDER-SSRSFQLTKEAICLNPGNYTVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKN  117 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~-s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l-~~~~~~eL~~~~~~l~~~pkn  117 (284)
                      ..|.+||++.++|++||.++...+. .+++|++++.+|..||++|++|++|++++..+ +..+++||++++++|.++|||
T Consensus        79 ~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN  158 (349)
T 3q7a_A           79 IIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN  158 (349)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC
T ss_pred             HHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Confidence            5788999999999999999998874 68999999999999999999999999999998 535899999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-------cHHHHHHHHHHHh
Q 023284          118 YQLWHHRRWVAEKLGTGAVN--------KELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-------WEDELDYCQMLLG  182 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~~~~~--------eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-------~~eeL~~~~~~l~  182 (284)
                      |+||+||+|++.++|.  ++        +|+++++++|++||+|++||+||++++.+++.       +++|+++++++|.
T Consensus       159 y~AW~~R~wvl~~l~~--~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~  236 (349)
T 3q7a_A          159 YHTWAYLHWLYSHFST--LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH  236 (349)
T ss_dssp             HHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc--ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999987  55        99999999999999999999999999999987       6899999999999


Q ss_pred             ccCCChHHHHHHHHHHhcCCCC
Q 023284          183 EDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       183 ~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      ++|+|.|||+|+++++.+.++.
T Consensus       237 ~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          237 LIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCC
T ss_pred             hCCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.97  E-value=2e-30  Score=254.83  Aligned_cols=163  Identities=25%  Similarity=0.457  Sum_probs=153.6

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHH
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDER----------SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVG  108 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~----------s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~  108 (284)
                      ..|.+||++++||++||.++.+.+.          .++|+++++++|+.+|++|.||+||++++..++. ++++|+++++
T Consensus        54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~  133 (567)
T 1dce_A           54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA  133 (567)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            4688999999999999999998776          6899999999999999999999999999999983 3799999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc--------------cCcHHH
Q 023284          109 RIAKSNSKNYQLWHHRRWVAEKLG-TGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL--------------GGWEDE  173 (284)
Q Consensus       109 ~~l~~~pkn~~aW~hR~~ll~~l~-~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l--------------~~~~ee  173 (284)
                      ++++.+|+|++||+||+|++..+| .  +++|+++++++|+.||+|++||+||+.++..+              +.+++|
T Consensus       134 k~l~~d~~N~~aW~~R~~~l~~l~~~--~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ee  211 (567)
T 1dce_A          134 RFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE  211 (567)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTCCC--HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred             HHHhhccccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHH
Confidence            999999999999999999999999 6  99999999999999999999999999999987              457999


Q ss_pred             HHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          174 LDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       174 L~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      +++++++|.++|.|.|||+|+++++.+.+++
T Consensus       212 l~~~~~ai~~~P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence            9999999999999999999999999988764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=1.2e-27  Score=224.29  Aligned_cols=211  Identities=23%  Similarity=0.357  Sum_probs=184.6

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDER-SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY  118 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~-s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~  118 (284)
                      -.|.++|++.++|.+++.++...++ .++|+.+++++|.++|+++.+|++||.++..+| ++++|+.+++++|.++|+++
T Consensus       122 ~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g-~~~eAl~~~~kal~ldP~~~  200 (382)
T 2h6f_A          122 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNY  200 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCccCH
Confidence            4577999999999999999999987 899999999999999999999999999999999 59999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-CcHHH-----HHHHHHHHhccCCChHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDE-----LDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-~~~ee-----L~~~~~~l~~dp~n~sAW~  192 (284)
                      ++|++||+++..+|+  +++|+.+++++|+++|+|..+|++||.++..++ ..++|     +++++++|+++|+|.++|+
T Consensus       201 ~a~~~lg~~~~~~g~--~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~  278 (382)
T 2h6f_A          201 HAWQHRQWVIQEFKL--WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN  278 (382)
T ss_dssp             HHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999  999999999999999999999999999999954 44777     6999999999999999999


Q ss_pred             HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCcc----CCC-ChhhHHHHHhh
Q 023284          193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES----WIN-DPRMLLSVFES  259 (284)
Q Consensus       193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~----~~~-~~~~~~~~~~~  259 (284)
                      +++.++...+..     -++++++++.++ ..+|++..++..+..++...++.    ..+ ..+++..+.++
T Consensus       279 ~l~~ll~~~g~~-----~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          279 YLKGILQDRGLS-----KYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHTTTCGG-----GCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCcc-----chHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            999999887631     136788888887 99999988888887777665321    011 24566666665

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=3.2e-22  Score=171.57  Aligned_cols=188  Identities=11%  Similarity=0.006  Sum_probs=174.8

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR  125 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~  125 (284)
                      |....++...+.++...+..++|+..++++|.++|++..+|..++.++..+| ++++++..+++++..+|.+..+|..++
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLG-LVNPALENGKTLVARTPRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            6667788888888888888899999999999999999999999999999999 599999999999999999999999999


Q ss_pred             HHHHHh-----------CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          126 WVAEKL-----------GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       126 ~ll~~l-----------~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      .++...           |+  +++++..++++++++|.+..+|..+|.++..+|++++|+++++++++++ .+..+|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGY--LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence            999999           99  9999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284          195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                      +.++..+|++       ++++..+++++.++|++..++..+..++...++
T Consensus       158 a~~~~~~g~~-------~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~  200 (217)
T 2pl2_A          158 AELYLSMGRL-------DEALAQYAKALEQAPKDLDLRVRYASALLLKGK  200 (217)
T ss_dssp             HHHHHHHTCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred             HHHHHHcCCH-------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence            9999999884       889999999999999999999888887776643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.88  E-value=2.1e-21  Score=160.27  Aligned_cols=173  Identities=8%  Similarity=0.037  Sum_probs=164.9

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRW  126 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~  126 (284)
                      +.++++...+.+....+..++|+..++++|+++|++..+|..++.++..+| ++++++..+.+++..+|++..+|...+.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG-LPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            456788888999998888999999999999999999999999999999999 6999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch
Q 023284          127 VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG  206 (284)
Q Consensus       127 ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~  206 (284)
                      +....++  ++.++..+.++++++|.+..+|..+|.++..+|++++|+++++++++++|.+..+|+++|.++..++++  
T Consensus        82 ~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~--  157 (184)
T 3vtx_A           82 ANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR--  157 (184)
T ss_dssp             HHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH--
Confidence            9999999  999999999999999999999999999999999999999999999999999999999999999999984  


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCc
Q 023284          207 LIAMRDSEVNFTIEAILGNPENE  229 (284)
Q Consensus       207 ~~~~~~~el~~~~~~i~~~P~ne  229 (284)
                           ++++++++++|+++|+++
T Consensus       158 -----~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          158 -----DEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             -----HHHHHHHHHHHHTTHHHH
T ss_pred             -----HHHHHHHHHHHhCCccCH
Confidence                 889999999999999873

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=3.8e-20  Score=186.34  Aligned_cols=174  Identities=9%  Similarity=0.046  Sum_probs=160.8

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      -.|++.++++.++.++.+.++.++|+++++++|+++|++..+|+.+|.++..+| ++++|+..++++++++|++..+|++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999 5999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~  203 (284)
                      +|.++..+|+  +++|+++++++++++|++..+|+++|.++..+|++++|+++++++|+++|++..+|.+++.++..+++
T Consensus        83 Lg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           83 MGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhHHHHHHHHHH
Q 023284          204 LGGLIAMRDSEVNFTIE  220 (284)
Q Consensus       204 ~~~~~~~~~~el~~~~~  220 (284)
                      ++++...++++++...+
T Consensus       161 ~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          161 WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChh
Confidence            85544334444444333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.84  E-value=1e-19  Score=155.28  Aligned_cols=188  Identities=8%  Similarity=-0.039  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNP-GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV  127 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP-~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l  127 (284)
                      +.++...+.++...+..++|+..+++++.++| .+..+|+.++.++..+| ++++++.++++++..+|++..+|..++.+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK-KYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            47788888888888888999999999999999 99999999999999999 69999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhCcCCh-------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCC--ChHHHHHHHHHH
Q 023284          128 AEKLGTGAVNKELQFTKKMLSLDAKNY-------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIF--NNSAWNQRYFVV  198 (284)
Q Consensus       128 l~~l~~~~~~eel~~~~~aL~~dpkN~-------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~--n~sAW~~r~~ll  198 (284)
                      +..+|+  +++++..++++++++|+|.       .+|..+|.+...+|++++|+++++++++++|.  +..+|..+|.+.
T Consensus        86 ~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           86 YRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            999999  9999999999999999999       77999999999999999999999999999999  999999999887


Q ss_pred             hcCCCC--ch------------------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284          199 TRSPLL--GG------------------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLY  239 (284)
Q Consensus       199 ~~l~~~--~~------------------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll  239 (284)
                      ...+..  +.                  ....+++++.+++++++++|++..+...+..+.
T Consensus       164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            765542  00                  112358899999999999999998877665553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.84  E-value=9.3e-20  Score=156.15  Aligned_cols=170  Identities=12%  Similarity=0.074  Sum_probs=151.5

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-----------hhCHHHHHHHHHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL-----------HTDLQDELAFVGR  109 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l-----------~~~~~~eL~~~~~  109 (284)
                      .|..+|++..++..++.++...+..++|+..+++++.++|++..+|..++.++..+           | ++++++..+++
T Consensus        31 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~  109 (217)
T 2pl2_A           31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG-YLEQALSVLKD  109 (217)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH-HHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc-CHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999           8 59999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          110 IAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       110 ~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      ++..+|++..+|..+|.++..+|+  +++++.+++++++++ .+..+|..++.++..+|++++|+..++++++.+|++..
T Consensus       110 al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  186 (217)
T 2pl2_A          110 AERVNPRYAPLHLQRGLVYALLGE--RDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD  186 (217)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999999  999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHH
Q 023284          190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEA  221 (284)
Q Consensus       190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~  221 (284)
                      ++..++.++..+|++       +++++++.++
T Consensus       187 ~~~~la~~~~~~g~~-------~~A~~~~~~~  211 (217)
T 2pl2_A          187 LRVRYASALLLKGKA-------EEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHTC---------------------
T ss_pred             HHHHHHHHHHHccCH-------HHHHHHHHHH
Confidence            999999999999885       5566666553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.84  E-value=1.5e-19  Score=165.78  Aligned_cols=160  Identities=15%  Similarity=0.110  Sum_probs=104.9

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +..+|....++..++.++...+..++|+.++++++.++|++..+|..++.++...| ++++++..+++++..+|++..+|
T Consensus        60 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~  138 (388)
T 1w3b_A           60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-DMEGAVQAYVSALQYNPDLYCVR  138 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHCTTCTHHH
T ss_pred             HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHH
Confidence            34556666666666666666666666666666666666666666666666666666 35666666666666666666666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      ...+.++..+|+  +++++.++.++++.+|.+..+|+..+.++...|++++|++.++++++++|.+..+|..+|.++...
T Consensus       139 ~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  216 (388)
T 1w3b_A          139 SDLGNLLKALGR--LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA  216 (388)
T ss_dssp             HHHHHHHHTTSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            666666666666  666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             CCC
Q 023284          202 PLL  204 (284)
Q Consensus       202 ~~~  204 (284)
                      +.+
T Consensus       217 ~~~  219 (388)
T 1w3b_A          217 RIF  219 (388)
T ss_dssp             TCT
T ss_pred             CCH
Confidence            554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.84  E-value=3.4e-19  Score=163.34  Aligned_cols=193  Identities=12%  Similarity=0.117  Sum_probs=145.5

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +..+|++..++...+.++...+..++|+..+++++.++|++..+|..++.++...| .+++++..+++++..+|++..+|
T Consensus       162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~  240 (388)
T 1w3b_A          162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-IFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcCCHHHH
Confidence            45577777777777777777777777888888888888888888888887777777 47777777777777777777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      ...+.++...|+  +++++..++++++++|.+..+|...+.++...|++++|+++++++++.+|.+..+|+.++.++...
T Consensus       241 ~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          241 GNLACVYYEQGL--IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence            777777777777  777777777777777777777777777777777777777777777777777777777777777776


Q ss_pred             CCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284          202 PLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       202 ~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                      +++       ++++..+.+++.++|++..+|+.+..++...++
T Consensus       319 g~~-------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  354 (388)
T 1w3b_A          319 GNI-------EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             TCH-------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred             CCH-------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            663       566777777777777777777666666554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=1.2e-19  Score=164.70  Aligned_cols=199  Identities=10%  Similarity=0.023  Sum_probs=147.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284           52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l  131 (284)
                      +...+..+...+..++|+.++++++.++|++..+|+.++.++..+| ++++++.++++++..+|++..+|...+.++...
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE-NEQAAIVALQRCLELQPNNLKALMALAVSYTNT  146 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence            4444555555555566666666666666666666666666666666 466666666666666666666666666666666


Q ss_pred             CC------------------------------------------CCHHHHHHHHHHHHHhCcC--ChhHHhHHHHHHHHc
Q 023284          132 GT------------------------------------------GAVNKELQFTKKMLSLDAK--NYHAWSYRQWVLQAL  167 (284)
Q Consensus       132 ~~------------------------------------------~~~~eel~~~~~aL~~dpk--N~~AW~~r~~vl~~l  167 (284)
                      |+                                          ..+++++.+++++++++|.  +..+|...+.++...
T Consensus       147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  226 (365)
T 4eqf_A          147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS  226 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence            55                                          0045555556666666666  788888999999999


Q ss_pred             cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCC
Q 023284          168 GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWI  247 (284)
Q Consensus       168 ~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~  247 (284)
                      |++++|+++++++++.+|.+..+|+.++.++...+++       ++++.++.+++.++|++..+|..++.++...+    
T Consensus       227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----  295 (365)
T 4eqf_A          227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS-------EEAVEAYTRALEIQPGFIRSRYNLGISCINLG----  295 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT----
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC----
Confidence            9999999999999999999999999999999888874       78899999999999999999988888777664    


Q ss_pred             CChhhHHHHHhhhhc
Q 023284          248 NDPRMLLSVFESFEY  262 (284)
Q Consensus       248 ~~~~~~~~~~~~~~~  262 (284)
                      ++.+++..+.++++-
T Consensus       296 ~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          296 AYREAVSNFLTALSL  310 (365)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            356777777776553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.82  E-value=5e-19  Score=178.26  Aligned_cols=168  Identities=9%  Similarity=-0.003  Sum_probs=154.7

Q ss_pred             hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284           78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus        78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      .+|++..+++.+|.++..+| ++++|+++++++|+++|++..+|+++|.++..+|+  +++|+++++++|+++|++..+|
T Consensus         4 s~P~~a~al~nLG~~~~~~G-~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--~~eA~~~~~~Al~l~P~~~~a~   80 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAY   80 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHH
Confidence            47999999999999999999 59999999999999999999999999999999999  9999999999999999999999


Q ss_pred             hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284          158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG  237 (284)
Q Consensus       158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~  237 (284)
                      +++|.++..+|++++|+++++++|+++|++..+|+++|.++..+|++       ++++++++++|+++|++..+|..++.
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~-------~eAi~~~~~Al~l~P~~~~a~~~L~~  153 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI-------PEAIASYRTALKLKPDFPDAYCNLAH  153 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCChHHHhhhhh
Confidence            99999999999999999999999999999999999999999999984       88999999999999999999999988


Q ss_pred             HHccCCccCCCChhhHHHHHhh
Q 023284          238 LYKDDTESWINDPRMLLSVFES  259 (284)
Q Consensus       238 ll~~~~~~~~~~~~~~~~~~~~  259 (284)
                      ++...++    ..++...+.++
T Consensus       154 ~l~~~g~----~~~A~~~~~ka  171 (723)
T 4gyw_A          154 CLQIVCD----WTDYDERMKKL  171 (723)
T ss_dssp             HHHHTTC----CTTHHHHHHHH
T ss_pred             HHHhccc----HHHHHHHHHHH
Confidence            8876644    44555544444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.82  E-value=2.5e-18  Score=141.68  Aligned_cols=171  Identities=12%  Similarity=0.066  Sum_probs=159.2

Q ss_pred             CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284           80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY  159 (284)
Q Consensus        80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~  159 (284)
                      +++.++|+..|.+....| ++++|+++++++++.+|++..+|..++.++..+|+  +++++..+.+++..+|.+..+|..
T Consensus         2 ge~~~iy~~lG~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~   78 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKG-DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--PNDAIESLKKFVVLDTTSAEAYYI   78 (184)
T ss_dssp             --CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCchhHHHHHH
Confidence            467899999999999999 69999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284          160 RQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY  239 (284)
Q Consensus       160 r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll  239 (284)
                      .+.+....++++.+++.+.+++..+|.+..+|..+|.++..++++       ++++++++++++++|++..+|+.++.++
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~~l~~~p~~~~~~~~lg~~~  151 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH-------DKAIEAYEKTISIKPGFIRAYQSIGLAY  151 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc-------hhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999984       8899999999999999999999988888


Q ss_pred             ccCCccCCCChhhHHHHHhhhhccc
Q 023284          240 KDDTESWINDPRMLLSVFESFEYQK  264 (284)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~  264 (284)
                      ...+    +.++++.++.++|+-+.
T Consensus       152 ~~~g----~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          152 EGKG----LRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHTT----CHHHHHHHHHHHHHTTH
T ss_pred             HHCC----CHHHHHHHHHHHHhCCc
Confidence            7765    46789999999877554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=3.1e-18  Score=145.53  Aligned_cols=187  Identities=13%  Similarity=0.076  Sum_probs=159.7

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +..+|+...++..++.++...+..++|+..+.+++.++|.+..+|...+.++...| ++++++.++++++..+|++..+|
T Consensus        50 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~  128 (243)
T 2q7f_A           50 IEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE-MYKEAKDMFEKALRAGMENGDLF  128 (243)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCCSHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHH
Confidence            44677788888888888888888888999999999999988889888888888888 58889999999999999998898


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      ...+.++...|+  +++++.+++++++++|.+..+|...+.++...|++++|+.+++++++.+|.+..+|..++.++...
T Consensus       129 ~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  206 (243)
T 2q7f_A          129 YMLGTVLVKLEQ--PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK  206 (243)
T ss_dssp             HHHHHHHHHTSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcc--HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            888888888888  889999999999999988889988888888889999999999999999998888888888888888


Q ss_pred             CCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284          202 PLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL  238 (284)
Q Consensus       202 ~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l  238 (284)
                      +++       +++++++.+++.++|++..+|..+..+
T Consensus       207 ~~~-------~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          207 ENR-------EKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             TCT-------THHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             cCH-------HHHHHHHHHHHccCcchHHHHHHHHHH
Confidence            875       567888888888999888888654433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.81  E-value=4.1e-19  Score=169.94  Aligned_cols=190  Identities=11%  Similarity=0.010  Sum_probs=177.6

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           43 AYKPEFSETMSYFRAVYYSDERS-SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s-~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      ...|+...++..++.++...+.. ++|++++.++++++|++..+|+.++.++...| ++++|+.++++++..+|. ..+|
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~  173 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG-DVTSAHTCFSGALTHCKN-KVSL  173 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCCC-HHHH
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-HHHH
Confidence            35667788899999999988888 99999999999999999999999999999999 699999999999999999 7999


Q ss_pred             HHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc--------cCcHHHHHHHHHHHhcc
Q 023284          122 HHRRWVAEKL---------GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL--------GGWEDELDYCQMLLGED  184 (284)
Q Consensus       122 ~hR~~ll~~l---------~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l--------~~~~eeL~~~~~~l~~d  184 (284)
                      ...+.++..+         |+  +++++.+++++++++|.+..+|+.++.++..+        |++++|+++++++++++
T Consensus       174 ~~lg~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  251 (474)
T 4abn_A          174 QNLSMVLRQLQTDSGDEHSRH--VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD  251 (474)
T ss_dssp             HHHHHHHTTCCCSCHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccCChhhhhhh--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence            9999999998         88  99999999999999999999999999999999        99999999999999999


Q ss_pred             C---CChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          185 I---FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       185 p---~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      |   .+..+|++++.++..++++       +++++++.++++++|++..+|..+..++...+
T Consensus       252 p~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          252 RKASSNPDLHLNRATLHKYEESY-------GEALEGFSQAAALDPAWPEPQQREQQLLEFLS  306 (474)
T ss_dssp             GGGGGCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9   9999999999999999884       88999999999999999999988877766543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.81  E-value=3.5e-18  Score=151.16  Aligned_cols=206  Identities=10%  Similarity=-0.017  Sum_probs=144.9

Q ss_pred             ecChhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           43 AYKPEFSETMSYFRAVYYSDE-RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~-~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      ..+|+...++...+.++...+ ..++|+.++++++.++|.+..+|..++.++...| ++++++.++++++..+|++..+|
T Consensus        84 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~  162 (330)
T 3hym_B           84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKGCHLPM  162 (330)
T ss_dssp             HHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTTCSHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccccHHHH
Confidence            345555666666666655555 5566777777777777777777777777666666 46677777777777777777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc---------CCChHHHH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED---------IFNNSAWN  192 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d---------p~n~sAW~  192 (284)
                      ...+.++...|+  +++++.+++++++.+|.+..+|...+.++...|++++|+.+++++++..         |.+..+|.
T Consensus       163 ~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  240 (330)
T 3hym_B          163 LYIGLEYGLTNN--SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN  240 (330)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred             HHHHHHHHHHhh--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence            777777666666  7777777777777777777777777777777777777777777777765         55566677


Q ss_pred             HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      .++.++..+++       +++++.++.+++.++|++..+|..++.++...++    ..+++..+.++++-
T Consensus       241 ~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~  299 (330)
T 3hym_B          241 NLGHVCRKLKK-------YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN----FENAVDYFHTALGL  299 (330)
T ss_dssp             HHHHHHHHTTC-------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC----HHHHHHHHHTTTTT
T ss_pred             HHHHHHHHhcC-------HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc----HHHHHHHHHHHHcc
Confidence            77766666665       4788999999999999999999888888776543    45666666666543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=2.3e-18  Score=152.38  Aligned_cols=190  Identities=11%  Similarity=0.022  Sum_probs=178.3

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +.++|++..++..++.++...+..++|+..+.+++.++|++..+|..++.++...| ++++++.++++++..+|.+..+|
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~  196 (330)
T 3hym_B          118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLAERFFSQALSIAPEDPFVM  196 (330)
T ss_dssp             HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCCCChHHH
Confidence            45678888899999998888888899999999999999999999999999999999 69999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLD---------AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~d---------pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      ...+.++...|+  +++++.++.+++++.         |.+..+|...+.++...|++++|+.+++++++.+|.+..+|.
T Consensus       197 ~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  274 (330)
T 3hym_B          197 HEVGVVAFQNGE--WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS  274 (330)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred             HHHHHHHHHccc--HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHH
Confidence            999999999999  999999999999997         778899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284          193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD  241 (284)
Q Consensus       193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~  241 (284)
                      ..+.++..++++       +++++++.+++.++|++..+|..+..++..
T Consensus       275 ~la~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  316 (330)
T 3hym_B          275 AIGYIHSLMGNF-------ENAVDYFHTALGLRRDDTFSVTMLGHCIEM  316 (330)
T ss_dssp             HHHHHHHHHTCH-------HHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccH-------HHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence            999999998874       789999999999999999999888877743

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=1.2e-17  Score=139.75  Aligned_cols=190  Identities=11%  Similarity=0.031  Sum_probs=174.8

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      -+|+...++...+.++...+..++|+..+.+++..+|.+..+|...+.++...| ++++++..+++++..+|.+..+|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK-VNDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHH
Confidence            467888999999999988888899999999999999999999999999999999 6999999999999999999999999


Q ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHH--hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          124 RRWVAEKL-GTGAVNKELQFTKKMLS--LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       124 R~~ll~~l-~~~~~~eel~~~~~aL~--~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      .+.++... |+  +++++.+++++++  .+|.+..+|...+.++...|++++|++++.++++.+|.+..+|...+.++..
T Consensus        82 l~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  159 (225)
T 2vq2_A           82 YGWFLCGRLNR--PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML  159 (225)
T ss_dssp             HHHHHHTTTCC--HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCc--HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            99999999 99  9999999999999  7788899999999999999999999999999999999999999999999988


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHhcCC-CCccHHHHHHHHHccCC
Q 023284          201 SPLLGGLIAMRDSEVNFTIEAILGNP-ENESPWRYLRGLYKDDT  243 (284)
Q Consensus       201 l~~~~~~~~~~~~el~~~~~~i~~~P-~nesaW~y~~~ll~~~~  243 (284)
                      .+++       ++++..+.+++..+| ++..+|..+..++...+
T Consensus       160 ~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (225)
T 2vq2_A          160 AGQL-------GDADYYFKKYQSRVEVLQADDLLLGWKIAKALG  196 (225)
T ss_dssp             HTCH-------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             cCCH-------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            8874       788999999999999 88888866655555543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=6.5e-19  Score=159.94  Aligned_cols=196  Identities=12%  Similarity=0.058  Sum_probs=173.9

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh---------------------
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT---------------------   98 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~---------------------   98 (284)
                      -.+..+|+...++..++.++...+..++|+..+++++.++|++..+|..++.++..+|.                     
T Consensus        90 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  169 (365)
T 4eqf_A           90 AAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL  169 (365)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH
Confidence            45677899999999999999999999999999999999999999999999999887762                     


Q ss_pred             ----------------------CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284           99 ----------------------DLQDELAFVGRIAKSNSK--NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY  154 (284)
Q Consensus        99 ----------------------~~~~eL~~~~~~l~~~pk--n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~  154 (284)
                                            ++++++.++++++..+|.  +..+|...+.++...|+  +++++.+++++++++|.+.
T Consensus       170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~  247 (365)
T 4eqf_A          170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--FNRAIDAFNAALTVRPEDY  247 (365)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCH
T ss_pred             HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCH
Confidence                                  134455555566666676  88999999999999999  9999999999999999999


Q ss_pred             hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC-------
Q 023284          155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE-------  227 (284)
Q Consensus       155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~-------  227 (284)
                      .+|...+.++...|++++|+++++++++++|.+..+|..++.++..++++       ++++.++.+++.++|+       
T Consensus       248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~  320 (365)
T 4eqf_A          248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY-------REAVSNFLTALSLQRKSRNQQQV  320 (365)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-------HHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCcccCCCccc
Confidence            99999999999999999999999999999999999999999999999986       7789999999999988       


Q ss_pred             -----CccHHHHHHHHHccCCc
Q 023284          228 -----NESPWRYLRGLYKDDTE  244 (284)
Q Consensus       228 -----nesaW~y~~~ll~~~~~  244 (284)
                           +..+|..++.++...++
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          321 PHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             ------CHHHHHHHHHHHHHTC
T ss_pred             chhhhHHHHHHHHHHHHHHcCc
Confidence                 36789988888777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.80  E-value=2.3e-17  Score=141.63  Aligned_cols=210  Identities=8%  Similarity=-0.064  Sum_probs=184.6

Q ss_pred             CcceeecChhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284           38 PVVPIAYKPEF-SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK  116 (284)
Q Consensus        38 ~~~~I~~~p~~-~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk  116 (284)
                      ....-..+|+. ..++...+.++...+..++|+.++++++..+|.+..+|...+.++...| +++++++++++++..+|.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~  103 (252)
T 2ho1_A           25 NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM-EPKLADEEYRKALASDSR  103 (252)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT
T ss_pred             CccccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcC
Confidence            34556678887 7888888888888888899999999999999999999999999999999 699999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLS--LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~--~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      +..+|...+.++...|+  +++++.+++++++  .+|.+..+|...+.++...|++++|++++.++++.+|.+..+|...
T Consensus       104 ~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  181 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKR--YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM  181 (252)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhH--HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            99999999999999999  9999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      +.++...+++       ++++.++.+++..+|++..+|..+..++...+    +...+...+.++++
T Consensus       182 a~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          182 ADLLYKEREY-------VPARQYYDLFAQGGGQNARSLLLGIRLAKVFE----DRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHTTCH-------HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCH-------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc----CHHHHHHHHHHHHH
Confidence            9999988874       78899999999999999988877777766553    34455555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.2e-17  Score=142.69  Aligned_cols=202  Identities=9%  Similarity=0.067  Sum_probs=179.7

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------h
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------Y  118 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------~  118 (284)
                      +...+++...+.++...+..++|+.++++++.++ .+..+|..++.++..+| ++++++.++++++..+|++       .
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~   79 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKVIS   79 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHHHH
Confidence            4456778888888888888899999999999999 99999999999999999 6999999999999999988       7


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------------hCcCChhHHhHHHHHHHHccCcHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLS--------------------------LDAKNYHAWSYRQWVLQALGGWED  172 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~--------------------------~dpkN~~AW~~r~~vl~~l~~~~e  172 (284)
                      .+|...+.++..+|+  +++++.++.++++                          .+|.+..+|..++.++...|++++
T Consensus        80 ~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           80 KSFARIGNAYHKLGD--LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHccc--HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            999999999999998  9999999999998                          788899999999999999999999


Q ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhh
Q 023284          173 ELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM  252 (284)
Q Consensus       173 eL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~  252 (284)
                      |+.+++++++.+|.+..+|..++.++..++++       ++++.++.+++..+|++..+|..++.++...++    ...+
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~----~~~A  226 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-------PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE----YASA  226 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----HHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh----HHHH
Confidence            99999999999999999999999999988874       789999999999999999999888888777643    4566


Q ss_pred             HHHHHhhhhc
Q 023284          253 LLSVFESFEY  262 (284)
Q Consensus       253 ~~~~~~~~~~  262 (284)
                      +..+.++++-
T Consensus       227 ~~~~~~a~~~  236 (258)
T 3uq3_A          227 LETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666666543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.79  E-value=1.4e-18  Score=173.57  Aligned_cols=186  Identities=8%  Similarity=-0.103  Sum_probs=167.7

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC
Q 023284           43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAI--------CLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN  114 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L--------~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~  114 (284)
                      ..+|+...+....+   ...+..++|++.+++++        ..+|++..+|..++.++..+| ++++|+..+++++..+
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~  463 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG-DVAKATRKLDDLAERV  463 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC-CHHHHHHHHHHHhccC
Confidence            34566655554433   44556689999999999        999999999999999999999 6999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          115 SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       115 pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      |++..+|+++|.++..+|+  +++|++.++++++++|.+..+|.+++.++..+|++++ +++++++++++|.+..+|+++
T Consensus       464 p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l  540 (681)
T 2pzi_A          464 GWRWRLVWYRAVAELLTGD--YDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL  540 (681)
T ss_dssp             CCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence            9999999999999999999  9999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284          195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD  242 (284)
Q Consensus       195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~  242 (284)
                      |.++..++++       +++++.++++++++|++..+|..+..++...
T Consensus       541 g~~~~~~g~~-------~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~  581 (681)
T 2pzi_A          541 ARARSAEGDR-------VGAVRTLDEVPPTSRHFTTARLTSAVTLLSG  581 (681)
T ss_dssp             HHHHHHTTCH-------HHHHHHHHTSCTTSTTHHHHHHHHHHHTC--
T ss_pred             HHHHHHcCCH-------HHHHHHHHhhcccCcccHHHHHHHHHHHHcc
Confidence            9999999984       8899999999999999999998877776543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.79  E-value=1.2e-17  Score=141.87  Aligned_cols=205  Identities=13%  Similarity=0.038  Sum_probs=170.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK  130 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~  130 (284)
                      ++...+......+..++|+.++++++..+|.+..+|..++.++...| ++++++.++++++..+|.+..+|...+.++..
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVN-ELERALAFYDKALELDSSAATAYYGAGNVYVV  103 (243)
T ss_dssp             -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            34445556666777799999999999999999999999999999999 69999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhh
Q 023284          131 LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAM  210 (284)
Q Consensus       131 l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~  210 (284)
                      .|+  +++++.+++++++.+|.+..+|...+.++...|++++|+.+++++++.+|.+..+|...+.++...+.+      
T Consensus       104 ~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------  175 (243)
T 2q7f_A          104 KEM--YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML------  175 (243)
T ss_dssp             TTC--HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC------
T ss_pred             hcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH------
Confidence            999  999999999999999999999999999999999999999999999999999999999999999888875      


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh--cccccccc
Q 023284          211 RDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE--YQKQLCFC  269 (284)
Q Consensus       211 ~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  269 (284)
                       ++++.++.+++..+|++..+|..+..++...++    ...+...+.++++  ++....+.
T Consensus       176 -~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----~~~A~~~~~~~~~~~p~~~~~~~  231 (243)
T 2q7f_A          176 -DEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN----REKALEMLDKAIDIQPDHMLALH  231 (243)
T ss_dssp             -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----TTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             -HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC----HHHHHHHHHHHHccCcchHHHHH
Confidence             778999999999999999999888888776543    5677777776643  34444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.79  E-value=1.1e-17  Score=151.06  Aligned_cols=193  Identities=12%  Similarity=0.069  Sum_probs=144.0

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHH-----------------
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDEL-----------------  104 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL-----------------  104 (284)
                      +...|++..++..++.++...+..++|+.++.+++.++|++..+|..++.++..+| ++++++                 
T Consensus        91 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~  169 (368)
T 1fch_A           91 VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES-LQRQACEILRDWLRYTPAYAHLV  169 (368)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTTTGGGC
T ss_pred             HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHH
Confidence            34566777777777777777777777888888888888887777777777776665 244433                 


Q ss_pred             --------------------------------HHHHHHHHhCCC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 023284          105 --------------------------------AFVGRIAKSNSK--NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD  150 (284)
Q Consensus       105 --------------------------------~~~~~~l~~~pk--n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d  150 (284)
                                                      .++++++..+|.  +..+|...+.++...|+  +++++.+++++++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~  247 (368)
T 1fch_A          170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--YDKAVDCFTAALSVR  247 (368)
T ss_dssp             C---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC
Confidence                                            444444445555  56677777777777777  778888888888888


Q ss_pred             cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC--
Q 023284          151 AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN--  228 (284)
Q Consensus       151 pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n--  228 (284)
                      |.+..+|..++.++...|++++|+.+++++++++|.+..+|..++.++..+++       +++++.++.+++.++|++  
T Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~  320 (368)
T 1fch_A          248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-------HREAVEHFLEALNMQRKSRG  320 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHTC--
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCCCCCC
Confidence            88878888888888778888888888888888888887788777777777776       478899999999999988  


Q ss_pred             ---------ccHHHHHHHHHccCCc
Q 023284          229 ---------ESPWRYLRGLYKDDTE  244 (284)
Q Consensus       229 ---------esaW~y~~~ll~~~~~  244 (284)
                               ..+|..++.++...++
T Consensus       321 ~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          321 PRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHTC
T ss_pred             ccccccchhhHHHHHHHHHHHHhCC
Confidence                     7789888888777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=3.5e-18  Score=134.82  Aligned_cols=122  Identities=16%  Similarity=0.120  Sum_probs=112.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC
Q 023284           74 EAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN  153 (284)
Q Consensus        74 ~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN  153 (284)
                      ++..+||+...++..+|..+...| ++++++.++++++..+|.+..+|.++|.++..+|+  +++++..++++|+++|++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKG-DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--FQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--HHHHHHHHHHHHHhhhhh
Confidence            456689999999999999999999 69999999999999999999999999999999999  999999999999999999


Q ss_pred             hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          154 YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       154 ~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      ..+|.++|.++..+|++++|+++++++|+++|+|..|+...+.++
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998877665

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.78  E-value=5.3e-17  Score=144.68  Aligned_cols=199  Identities=12%  Similarity=0.071  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA  128 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll  128 (284)
                      .+++...+..+...+..++|+.++++++..+|.+..+|..++.++..+| ++++++.++++++..+|.+..+|...+.++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            4566777777777788899999999999999999999999999999999 699999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCc---CChhHHhHH------------HHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284          129 EKLGTGAVNKELQFTKKMLSLDA---KNYHAWSYR------------QWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ  193 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~~dp---kN~~AW~~r------------~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~  193 (284)
                      ...|+  +++++..+.++++++|   .+..+|...            +.++...|++++|+++++++++.+|.+..+|..
T Consensus        82 ~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  159 (359)
T 3ieg_A           82 LKQGK--LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL  159 (359)
T ss_dssp             HHHTC--HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHcCC--hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            99998  9999999999999999   899998877            577888899999999999999999999999999


Q ss_pred             HHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      ++.++..++++       ++++..+.+++..+|++..+|..++.++...++    ...++..+.++++
T Consensus       160 ~~~~~~~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----~~~A~~~~~~a~~  216 (359)
T 3ieg_A          160 RAECFIKEGEP-------RKAISDLKAASKLKSDNTEAFYKISTLYYQLGD----HELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHTTCH-------HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHh
Confidence            99999888874       778899999999999999999888777766543    4556665555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.78  E-value=3.5e-17  Score=147.69  Aligned_cols=206  Identities=9%  Similarity=0.015  Sum_probs=164.3

Q ss_pred             eecChhH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC
Q 023284           42 IAYKPEF----SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN  117 (284)
Q Consensus        42 I~~~p~~----~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn  117 (284)
                      +.+.|+.    ..++...+.++...+..++|+.++++++.++|.+..+|..++.++...| ++++++.++++++..+|++
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~  131 (368)
T 1fch_A           53 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE-QELLAISALRRCLELKPDN  131 (368)
T ss_dssp             CCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHhcCCCC
Confidence            3455554    3456677777777888899999999999999999999999999999999 6999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc----------------------------------------------
Q 023284          118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA----------------------------------------------  151 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp----------------------------------------------  151 (284)
                      ..+|...+.++...|+  +++++..+.++++++|                                              
T Consensus       132 ~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  209 (368)
T 1fch_A          132 QTALMALAVSFTNESL--QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  209 (368)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence            9999999999999887  6666666665555554                                              


Q ss_pred             ---C--ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284          152 ---K--NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP  226 (284)
Q Consensus       152 ---k--N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P  226 (284)
                         .  +..+|..++.++...|++++|+.+++++++.+|.+..+|+.++.++...+++       ++++.++.+++.++|
T Consensus       210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~  282 (368)
T 1fch_A          210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS-------EEAVAAYRRALELQP  282 (368)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCT
T ss_pred             hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC
Confidence               4  5566677777777888888888888888888888888888888888777763       778888888888888


Q ss_pred             CCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          227 ENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       227 ~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      ++..+|..++.++...++    ..+++..+.++++
T Consensus       283 ~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~  313 (368)
T 1fch_A          283 GYIRSRYNLGISCINLGA----HREAVEHFLEALN  313 (368)
T ss_dssp             TCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCC----HHHHHHHHHHHHH
Confidence            888888777777665543    4556665555543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.77  E-value=4.5e-17  Score=145.15  Aligned_cols=185  Identities=10%  Similarity=0.006  Sum_probs=172.6

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC---CCh
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS---KNY  118 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p---kn~  118 (284)
                      +..+|+...++...+.++...+..++|+..+++++.++|.+..+|..++.++...| ++++++..+++++..+|   ++.
T Consensus        30 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~  108 (359)
T 3ieg_A           30 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEK  108 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             HhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCcccChH
Confidence            45678888999999999998888999999999999999999999999999999999 69999999999999999   999


Q ss_pred             HHHHHH------------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          119 QLWHHR------------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       119 ~aW~hR------------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                      .+|...            +.++...|+  +++++.+++++++.+|.+..+|..++.++..+|++++|++.++++++.+|.
T Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  186 (359)
T 3ieg_A          109 EAESQLVKADEMQRLRSQALDAFDGAD--YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD  186 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            999877            577788888  999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284          187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLR  236 (284)
Q Consensus       187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~  236 (284)
                      +..+|..++.++...+++       +++++.+.+++..+|++..+|.+..
T Consensus       187 ~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~~~~~~~~~~~  229 (359)
T 3ieg_A          187 NTEAFYKISTLYYQLGDH-------ELSLSEVRECLKLDQDHKRCFAHYK  229 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCccchHHHHHHH
Confidence            999999999999888874       7889999999999999999887653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.77  E-value=5.7e-17  Score=150.46  Aligned_cols=207  Identities=12%  Similarity=0.064  Sum_probs=181.8

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      .+.-+|+...++...+..+...+..++|+.++++++..+|++..+|+.++.++..+| ++++++.++++++..+|++..+
T Consensus        18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHH
Confidence            456789999999999999888888899999999999999999999999999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---hHHhHH------------HHHHHHccCcHHHHHHHHHHHhccC
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---HAWSYR------------QWVLQALGGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~AW~~r------------~~vl~~l~~~~eeL~~~~~~l~~dp  185 (284)
                      |...+.++..+|+  +++++.+++++++++|.+.   .+|...            +.++...|++++|+.+++++++.+|
T Consensus        97 ~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A           97 RLQRGHLLLKQGK--LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV  174 (450)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999  9999999999999999999   887665            5558889999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          186 FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       186 ~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      .+..++..++.++...+++       +++++.+.+++..+|++..+|+.+..++...++    ...++..+.+++.
T Consensus       175 ~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~  239 (450)
T 2y4t_A          175 WDAELRELRAECFIKEGEP-------RKAISDLKAASKLKNDNTEAFYKISTLYYQLGD----HELSLSEVRECLK  239 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCG-------GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHH
Confidence            9999999999999999885       567888999999999999999888877776543    4566666665543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.77  E-value=2.5e-18  Score=139.32  Aligned_cols=145  Identities=5%  Similarity=-0.058  Sum_probs=132.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 023284           56 RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA  135 (284)
Q Consensus        56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~  135 (284)
                      +.+..+.+..++|++.+.+++..+|++..+++..+.+...+| ++++|++++++++.++|++..+|..+|.++..+|+  
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--   80 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK-EYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN--   80 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--
Confidence            444555555689999999999999999999999999999999 69999999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHH-HHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDY-CQMLLGEDIFNNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~-~~~~l~~dp~n~sAW~~r~~ll~~l~~  203 (284)
                      +++++.++.++++++|++..+|...+.++...++++++... ++++++++|+|..++..++.++...|.
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999887765 699999999999999999999877653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.1e-17  Score=142.85  Aligned_cols=181  Identities=9%  Similarity=0.013  Sum_probs=165.6

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHhhhCHHHHHHHHHHHHH-------
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN-------YTVWHFRRQIIETLHTDLQDELAFVGRIAK-------  112 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~-------~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~-------  112 (284)
                      +...++..++.++...+..++|+..+.+++.++|++       ..+|..++.++..+| ++++++.++++++.       
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~  114 (258)
T 3uq3_A           36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG-DLKKTIEYYQKSLTEHRTADI  114 (258)
T ss_dssp             CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCchhHH
Confidence            446678888888888888899999999999999987       799999999999998 58899999998888       


Q ss_pred             -------------------hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHH
Q 023284          113 -------------------SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDE  173 (284)
Q Consensus       113 -------------------~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ee  173 (284)
                                         .+|.+..+|..++.++...|+  +++++.+++++++.+|.+..+|..++.++...|++++|
T Consensus       115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  192 (258)
T 3uq3_A          115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA  192 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHH
Confidence                               788889999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC------CCCccHHHHHHH
Q 023284          174 LDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN------PENESPWRYLRG  237 (284)
Q Consensus       174 L~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~------P~nesaW~y~~~  237 (284)
                      +.+++++++.+|.+..+|..++.++..++++       +++++++.++++++      |++..++..+..
T Consensus       193 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEY-------ASALETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            9999999999999999999999999999884       78899999999999      988888766544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=5.2e-17  Score=145.84  Aligned_cols=205  Identities=7%  Similarity=-0.051  Sum_probs=173.4

Q ss_pred             eeecChhHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhhCHHHHHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYS-------DERS-------SRSFQLTKEAIC-LNPGNYTVWHFRRQIIETLHTDLQDELA  105 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~-------~~~s-------~~aL~~~~~~L~-lnP~~~~aW~~R~~~L~~l~~~~~~eL~  105 (284)
                      .|..+|++.++|..++.++..       .+..       ++|+..++++|. ++|++..+|...+.++...| +++++..
T Consensus        42 al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~-~~~~A~~  120 (308)
T 2ond_A           42 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM-KYEKVHS  120 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC-CHHHHHH
Confidence            355789999999998887652       3444       899999999999 79999999999999999999 6999999


Q ss_pred             HHHHHHHhCCCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHH-HccCcHHHHHHHHHHHhc
Q 023284          106 FVGRIAKSNSKNYQ-LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQ-ALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       106 ~~~~~l~~~pkn~~-aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~-~l~~~~eeL~~~~~~l~~  183 (284)
                      .+++++..+|+++. +|...+.++...|+  +++++..++++++.+|.+.++|...+.+.. ..|++++|+.+++++|+.
T Consensus       121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~  198 (308)
T 2ond_A          121 IYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK  198 (308)
T ss_dssp             HHHHHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCccHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999997 99999999999999  999999999999999999999987666543 379999999999999999


Q ss_pred             cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc---CCC-CccHHHHHHHHHccCCccCCCChhhHHHHHhh
Q 023284          184 DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG---NPE-NESPWRYLRGLYKDDTESWINDPRMLLSVFES  259 (284)
Q Consensus       184 dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~---~P~-nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~  259 (284)
                      +|.+..+|...+.++..+|+.       +++...+++++..   .|+ +...|.....+....++    ...+...+..+
T Consensus       199 ~p~~~~~~~~~~~~~~~~g~~-------~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~----~~~a~~~~~~a  267 (308)
T 2ond_A          199 YGDIPEYVLAYIDYLSHLNED-------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD----LASILKVEKRR  267 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC----HHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHH
Confidence            999999999999999888874       7788999999985   554 66788766655554432    34444444444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.76  E-value=8.1e-17  Score=134.62  Aligned_cols=185  Identities=9%  Similarity=0.055  Sum_probs=168.3

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-hhCHHHHHHHHHHHHH--hCCCCh
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL-HTDLQDELAFVGRIAK--SNSKNY  118 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l-~~~~~~eL~~~~~~l~--~~pkn~  118 (284)
                      +...|+...++...+.++...+..++|+..+++++.++|.+..+|..++.++... | ++++++.++++++.  .+|.+.
T Consensus        35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~  113 (225)
T 2vq2_A           35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN-RPAESMAYFDKALADPTYPTPY  113 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHTSTTCSCHH
T ss_pred             HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCcCCcchH
Confidence            4567788889999999888888889999999999999999999999999999999 8 69999999999999  778889


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccC-CChHHHHHHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI-FNNSAWNQRYFV  197 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp-~n~sAW~~r~~l  197 (284)
                      .+|...+.++...|+  +++++.++.++++.+|.+..+|...+.++...|++++|+..++++++.+| .+..++...+.+
T Consensus       114 ~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  191 (225)
T 2vq2_A          114 IANLNKGICSAKQGQ--FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI  191 (225)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            999999999999999  99999999999999999999999999999999999999999999999999 999998877777


Q ss_pred             HhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284          198 VTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLR  236 (284)
Q Consensus       198 l~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~  236 (284)
                      ....+..       +++..++..++..+|+++.+..++.
T Consensus       192 ~~~~~~~-------~~a~~~~~~~~~~~p~~~~~~~~l~  223 (225)
T 2vq2_A          192 AKALGNA-------QAAYEYEAQLQANFPYSEELQTVLT  223 (225)
T ss_dssp             HHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             HHhcCcH-------HHHHHHHHHHHHhCCCCHHHHHHhc
Confidence            7777763       6677788888889999998876653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=2.7e-17  Score=145.24  Aligned_cols=205  Identities=10%  Similarity=0.011  Sum_probs=147.8

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      ..|+...++...+.++...+..++|+..+++++.++|.+..+|...+.++...| ++++++..+++++..+|++..++..
T Consensus        50 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~  128 (327)
T 3cv0_A           50 AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH-NANAALASLRAWLLSQPQYEQLGSV  128 (327)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTTTTTC---
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHH
Confidence            455555555555555555555566666666666666666666666666666666 4666666666666666666666555


Q ss_pred             H--------------HH-HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          124 R--------------RW-VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       124 R--------------~~-ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      .              +. ++...|+  +++++.++.++++.+|.+..+|...+.++...|++++|+.++.++++.+|.+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  206 (327)
T 3cv0_A          129 NLQADVDIDDLNVQSEDFFFAAPNE--YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA  206 (327)
T ss_dssp             -----------------CCTTSHHH--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhHHHHHHHHHHHHHHhHHHHHccc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            4              33 3333444  67788888888888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      .+|..++.++...+++       ++++.++.+++..+|++..+|..+..++...++    ...++..+.++++-
T Consensus       207 ~~~~~l~~~~~~~~~~-------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          207 QLWNKLGATLANGNRP-------QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ----YDLAAKQLVRAIYM  269 (327)
T ss_dssp             HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHh
Confidence            9999999998888874       788999999999999999999888777766543    55666666666543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.76  E-value=4.5e-17  Score=141.12  Aligned_cols=197  Identities=5%  Similarity=-0.062  Sum_probs=168.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh----HHHHHHHH
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY----QLWHHRRW  126 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~----~aW~hR~~  126 (284)
                      ++..++.++...+..++|+..+++++..+|++..+|..++.++..+| ++++++.++++++. .|.+.    .+|..+|.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA-KYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT-CHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-hHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            44556667777788899999999999999999999999999999999 69999999999999 55443    45999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH-HHHhcCCCCc
Q 023284          127 VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY-FVVTRSPLLG  205 (284)
Q Consensus       127 ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~-~ll~~l~~~~  205 (284)
                      ++..+|+  +++++.+++++++++|.+..+|..++.++...|++++|+++++++++.+|.+..+|..++ .+.... .  
T Consensus        83 ~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~--  157 (272)
T 3u4t_A           83 ILMKKGQ--DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E--  157 (272)
T ss_dssp             HHHHTTC--HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-C--
T ss_pred             HHHHccc--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-H--
Confidence            9999999  999999999999999999999999999999999999999999999999999999999999 555443 3  


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284          206 GLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESF  260 (284)
Q Consensus       206 ~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  260 (284)
                           ++++++++.+++.++|++..+|..++.++...+. -.....++..+.+++
T Consensus       158 -----~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          158 -----YVKADSSFVKVLELKPNIYIGYLWRARANAAQDP-DTKQGLAKPYYEKLI  206 (272)
T ss_dssp             -----HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST-TCSSCTTHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc-chhhHHHHHHHHHHH
Confidence                 5889999999999999999999888777766543 111334444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.76  E-value=1e-16  Score=137.54  Aligned_cols=184  Identities=8%  Similarity=0.035  Sum_probs=172.6

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH--hCCCChH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK--SNSKNYQ  119 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~--~~pkn~~  119 (284)
                      +..+|+...++...+.++...+..++|++.+.+++..+|.+..+|...+.++...| +++++++++++++.  .+|.+..
T Consensus        64 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~  142 (252)
T 2ho1_A           64 LEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK-RYEEAYQRLLEASQDTLYPERSR  142 (252)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhCccCcccHH
Confidence            45678888999999998888888899999999999999999999999999999999 69999999999999  8999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      +|...+.++...|+  +++++.++.++++.+|.+..+|...+.++...|++++|+.+++++++.+|.+..++..++.++.
T Consensus       143 ~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (252)
T 2ho1_A          143 VFENLGLVSLQMKK--PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK  220 (252)
T ss_dssp             HHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            99999999999999  9999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHH
Q 023284          200 RSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYL  235 (284)
Q Consensus       200 ~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~  235 (284)
                      ..+..       ++++.++.+++..+|++..++.++
T Consensus       221 ~~g~~-------~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          221 VFEDR-------DTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HTTCH-------HHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HccCH-------HHHHHHHHHHHHHCCCCHHHHHHH
Confidence            88874       778999999999999998877654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.75  E-value=2e-16  Score=152.15  Aligned_cols=205  Identities=10%  Similarity=0.033  Sum_probs=181.9

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284           43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH  122 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~  122 (284)
                      ...|+...++...+.++.+.+..++|++++++++.++|.+..+|+..+.++...| +++++++++++++..+|++..+|.
T Consensus       367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~  445 (597)
T 2xpi_A          367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-EHDQAISAYTTAARLFQGTHLPYL  445 (597)
T ss_dssp             HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred             hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHH
Confidence            4567778888888888888888899999999999999999999999999999999 599999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc------cCCC-hHHHHHHH
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE------DIFN-NSAWNQRY  195 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~------dp~n-~sAW~~r~  195 (284)
                      ..+.++.+.|+  +++++++++++++++|.+..+|+..+.++.+.|++++|+++++++++.      +|.+ ..+|..++
T Consensus       446 ~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  523 (597)
T 2xpi_A          446 FLGMQHMQLGN--ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG  523 (597)
T ss_dssp             HHHHHHHHHTC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred             HHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence            99999999999  999999999999999999999999999999999999999999999998      6665 68899999


Q ss_pred             HHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          196 FVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       196 ~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      .++...|++       +++++.+++++..+|++..+|..+..++...++    ..++...+.++++
T Consensus       524 ~~~~~~g~~-------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~l~  578 (597)
T 2xpi_A          524 HAYRKLKMY-------DAAIDALNQGLLLSTNDANVHTAIALVYLHKKI----PGLAITHLHESLA  578 (597)
T ss_dssp             HHHHHTTCH-------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred             HHHHHhcCH-------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC----HHHHHHHHHHHHh
Confidence            999888874       789999999999999999999998888877654    4566666666644

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.75  E-value=1.4e-16  Score=153.34  Aligned_cols=189  Identities=12%  Similarity=0.077  Sum_probs=176.3

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +..+|++..+|.....++.+.+..++|++++++++..+|++..+|+..+.++...| +++++++++++++..+|++..+|
T Consensus       400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~  478 (597)
T 2xpi_A          400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLL  478 (597)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHH
Confidence            34678888899999999888899999999999999999999999999999999999 69999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHh------CcCC-hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSL------DAKN-YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~------dpkN-~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      ...+.++.+.|+  ++++++++++++++      +|.+ ..+|...+.++...|++++|++.++++++.+|.+..+|..+
T Consensus       479 ~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  556 (597)
T 2xpi_A          479 NELGVVAFNKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI  556 (597)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            999999999999  99999999999998      6766 68999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                      +.++...|+.       ++++++++++++++|++..+|..+..++.
T Consensus       557 ~~~~~~~g~~-------~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          557 ALVYLHKKIP-------GLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHhCCH-------HHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            9999999884       78999999999999999999987776654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.74  E-value=1.7e-17  Score=141.11  Aligned_cols=177  Identities=12%  Similarity=0.060  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHHhhhCHHHHHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHF----------------RRQIIETLHTDLQDELAFVGRIAK  112 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~----------------R~~~L~~l~~~~~~eL~~~~~~l~  112 (284)
                      .+.+...+..+...+..++|+.++++++.++|++..+|+.                ++.++..+| ++++++.++++++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR-NYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence            3445556666667778899999999999999999999999                999999999 69999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC--cHHHHHHHHHHHhccCCChHH
Q 023284          113 SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG--WEDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       113 ~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~--~~eeL~~~~~~l~~dp~n~sA  190 (284)
                      ++|++..+|..+|.++...|+  +++++.+++++++++|.|..+|+.+|.++...+.  ...+...+.+++..+|. ..+
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a  159 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYA  159 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHH
Confidence            999999999999999999999  9999999999999999999999999999876654  35567777777755443 357


Q ss_pred             HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284          191 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG  237 (284)
Q Consensus       191 W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~  237 (284)
                      |+++|.+...+++       +++++.+++++|+++|+.+ +...+..
T Consensus       160 ~~~~g~~~~~~~~-------~~~A~~~~~~al~l~P~~~-~~~~l~~  198 (208)
T 3urz_A          160 RYRDGLSKLFTTR-------YEKARNSLQKVILRFPSTE-AQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHHHT-------HHHHHHHHHHHTTTSCCHH-HHHHHHH
T ss_pred             HHHHHHHHHHccC-------HHHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence            8888888777766       4889999999999999854 3334443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.74  E-value=1.9e-16  Score=146.94  Aligned_cols=184  Identities=11%  Similarity=0.009  Sum_probs=170.7

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---  118 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---  118 (284)
                      +..+|+...++..++.++...+..++|+..+.+++.++|++..+|..++.++..+| ++++++.++++++..+|.+.   
T Consensus        53 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~  131 (450)
T 2y4t_A           53 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEK  131 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhH
Confidence            44678888899999999988899999999999999999999999999999999999 69999999999999999999   


Q ss_pred             HHHHHH------------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          119 QLWHHR------------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       119 ~aW~hR------------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                      .+|...            +.++...|+  +++++.+++++++.+|.+..+|..++.++...|++++|++.++++++.+|.
T Consensus       132 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  209 (450)
T 2y4t_A          132 EAQSQLIKSDEMQRLRSQALNAFGSGD--YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND  209 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            887655            555778888  999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHH
Q 023284          187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYL  235 (284)
Q Consensus       187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~  235 (284)
                      +..+|..++.++...+++       ++++..+.+++.++|++...|..+
T Consensus       210 ~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~p~~~~~~~~~  251 (450)
T 2y4t_A          210 NTEAFYKISTLYYQLGDH-------ELSLSEVRECLKLDQDHKRCFAHY  251 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCChHHHHHHH
Confidence            999999999999998874       789999999999999999988765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=1.7e-17  Score=130.82  Aligned_cols=122  Identities=17%  Similarity=0.114  Sum_probs=113.8

Q ss_pred             HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          109 RIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       109 ~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      ++..+||+...++..+|..+.+.|+  +++|+.+++++|+++|.+..+|+++|.++..+|++++|+++++++|+++|.+.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGD--YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence            4567899999999999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284          189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY  239 (284)
Q Consensus       189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll  239 (284)
                      .+|..+|.++..++++       +++++++.++|+++|+|..++..++.++
T Consensus        82 ~a~~~lg~~~~~~~~~-------~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           82 KGYIRKAACLVAMREW-------SKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999984       8899999999999999999987776654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=3.9e-17  Score=144.25  Aligned_cols=193  Identities=9%  Similarity=0.053  Sum_probs=171.8

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHH--------------HH-HHHHhhhCHHHHHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFR--------------RQ-IIETLHTDLQDELAF  106 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R--------------~~-~L~~l~~~~~~eL~~  106 (284)
                      +..+|+...++...+.++...+..++|+..+.+++..+|.+..++...              +. ++...| ++++++.+
T Consensus        82 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~  160 (327)
T 3cv0_A           82 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN-EYRECRTL  160 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHH-HHHHHHHH
T ss_pred             HhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc-cHHHHHHH
Confidence            456788888888888888888888999999999999999999999887              55 455566 58999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          107 VGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                      +++++..+|.+..+|...+.++...|+  +++++.++.++++.+|.+..+|..++.++...|++++|+.+++++++.+|.
T Consensus       161 ~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  238 (327)
T 3cv0_A          161 LHAALEMNPNDAQLHASLGVLYNLSNN--YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG  238 (327)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC------------CccHHHHHHHHHccCCc
Q 023284          187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE------------NESPWRYLRGLYKDDTE  244 (284)
Q Consensus       187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~------------nesaW~y~~~ll~~~~~  244 (284)
                      +..+|..++.++..++++       ++++.++.+++..+|+            +..+|..+..++...++
T Consensus       239 ~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  301 (327)
T 3cv0_A          239 YVRVMYNMAVSYSNMSQY-------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR  301 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence            999999999999998874       7899999999999999            67889888888776653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.74  E-value=2.1e-16  Score=127.70  Aligned_cols=173  Identities=9%  Similarity=-0.007  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA  128 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll  128 (284)
                      ..++...+.++...+..++|+..+++++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|...+.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG-AVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4556666777777788899999999999999999999999999999999 699999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhh
Q 023284          129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLI  208 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~  208 (284)
                      ...|+  +++++..++++++.+|.+..+|...+.++...|++++|++++.++++.+|.+..+|...+.++...+++    
T Consensus        87 ~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----  160 (186)
T 3as5_A           87 VQVQK--YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH----  160 (186)
T ss_dssp             HHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----
T ss_pred             HHhcC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH----
Confidence            99999  999999999999999999999999999999999999999999999999999999999999999988874    


Q ss_pred             hhHHHHHHHHHHHHhcCCCCccH
Q 023284          209 AMRDSEVNFTIEAILGNPENESP  231 (284)
Q Consensus       209 ~~~~~el~~~~~~i~~~P~nesa  231 (284)
                         ++++.++.+++..+|++...
T Consensus       161 ---~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          161 ---EEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHCCCGG
T ss_pred             ---HHHHHHHHHHHHcCCCchhh
Confidence               78899999999999988653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.73  E-value=1.5e-16  Score=150.62  Aligned_cols=210  Identities=12%  Similarity=0.077  Sum_probs=127.8

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      .+|+ ..++...+.++...+..++|+..+.+++..+|++..+|..++.++...| ++++++..+++++..+|++..+|..
T Consensus       272 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~  349 (537)
T 3fp2_A          272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-DYKNAKEDFQKAQSLNPENVYPYIQ  349 (537)
T ss_dssp             HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred             cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3444 4455555555555555566666666666666666666666666666665 3666666666666666666666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH------HHHHH
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN------QRYFV  197 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~------~r~~l  197 (284)
                      ++.++...|+  +++++.+++++++.+|.+..+|..++.++...|++++|+.+++++++.+|.+..++.      .++.+
T Consensus       350 la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~  427 (537)
T 3fp2_A          350 LACLLYKQGK--FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI  427 (537)
T ss_dssp             HHHHHHHTTC--HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence            6666666665  666666666666666666666666666666666666666666666666655544332      22333


Q ss_pred             HhcCCCCch---hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          198 VTRSPLLGG---LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       198 l~~l~~~~~---~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      +...+....   ...-+++++.++.+++..+|++..+|..++.++...++    ..+++..+.++++
T Consensus       428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~  490 (537)
T 3fp2_A          428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK----IDEAIELFEDSAI  490 (537)
T ss_dssp             HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred             HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc----HHHHHHHHHHHHH
Confidence            333300000   00125788999999999999999999888888877653    4566666655544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.73  E-value=7.9e-17  Score=137.24  Aligned_cols=156  Identities=4%  Similarity=-0.084  Sum_probs=143.9

Q ss_pred             CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284           79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS-KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus        79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p-kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      .+.+..+|+.+|.++...| ++++++.++++++..+| .+..+|+.+|.++..+|+  +++++.+++++++.+|.+..+|
T Consensus         3 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~   79 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAK-NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--YKEAADYFDIAIKKNYNLANAY   79 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTCSHHHHH
T ss_pred             cccCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--HHHHHHHHHHHHHhCcchHHHH
Confidence            3556799999999999999 69999999999999999 999999999999999999  9999999999999999999999


Q ss_pred             hHHHHHHHHccCcHHHHHHHHHHHhccCCCh-------HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC--C
Q 023284          158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNN-------SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE--N  228 (284)
Q Consensus       158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~-------sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~--n  228 (284)
                      ..++.++..+|++++|+++++++++.+|.|.       .+|..+|.+...++++       +++++++.++|+++|+  +
T Consensus        80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p~~~~  152 (228)
T 4i17_A           80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI-------EKAEENYKHATDVTSKKWK  152 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHTTSSCHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH-------HHHHHHHHHHHhcCCCccc
Confidence            9999999999999999999999999999999       6799999999888874       8899999999999999  8


Q ss_pred             ccHHHHHHHHHccCCc
Q 023284          229 ESPWRYLRGLYKDDTE  244 (284)
Q Consensus       229 esaW~y~~~ll~~~~~  244 (284)
                      ..+|..++.++...+.
T Consensus       153 ~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A          153 TDALYSLGVLFYNNGA  168 (228)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999888877665433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=5.9e-16  Score=138.90  Aligned_cols=183  Identities=8%  Similarity=-0.036  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hhhC------HHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHh
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIET-------LHTD------LQDELAFVGRIAK-SNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~-------l~~~------~~~eL~~~~~~l~-~~pkn~~aW~hR~~ll~~l  131 (284)
                      .+|+..++++|..+|.+..+|+.++.++..       .|..      .++++..+++++. ++|++..+|...+.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            689999999999999999999999998864       3532      3899999999999 7999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCcCChh-HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh-cCCCCchhhh
Q 023284          132 GTGAVNKELQFTKKMLSLDAKNYH-AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT-RSPLLGGLIA  209 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpkN~~-AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~-~l~~~~~~~~  209 (284)
                      |+  ++++...++++++++|.+.. +|...+.++...|++++|+..++++++.+|.+..+|...+.+.. ..++      
T Consensus       113 ~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~------  184 (308)
T 2ond_A          113 MK--YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD------  184 (308)
T ss_dssp             TC--HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC------
T ss_pred             CC--HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC------
Confidence            99  99999999999999999997 99999999999999999999999999999999888876655532 2455      


Q ss_pred             hHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          210 MRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       210 ~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                       +++++..++++|+.+|++..+|..+..++...+    +..++...+-+++.
T Consensus       185 -~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g----~~~~A~~~~~~al~  231 (308)
T 2ond_A          185 -KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN----EDNNTRVLFERVLT  231 (308)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC----CHHHHHHHHHHHHh
Confidence             477899999999999999999987776665543    45677777777776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=8.2e-16  Score=137.95  Aligned_cols=177  Identities=10%  Similarity=0.049  Sum_probs=126.0

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      +|+...++...+.++...++.++|++.+++     |.+..++..++.++..+| +++++++.+++++..+|.+.......
T Consensus        97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~p~~~~~~l~~  170 (291)
T 3mkr_A           97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLD-RLDLARKELKKMQDQDEDATLTQLAT  170 (291)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCcCcHHHHHHH
Confidence            466666666666666666666677766665     666777777777777777 47777787888887777776444444


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      +|+-...+.+.+++++.+++++++.+|.+..+|+.++.++..+|++++|.+.++++|+.+|.|..+|++++.++..+|+.
T Consensus       171 a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence            44333222222788888888888888888888888888888888888888888888888888888888888887777764


Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284          205 GGLIAMRDSEVNFTIEAILGNPENESPWR  233 (284)
Q Consensus       205 ~~~~~~~~~el~~~~~~i~~~P~nesaW~  233 (284)
                      .      +.+.+++.+++.++|+|+.+-.
T Consensus       251 ~------eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          251 P------EVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             H------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred             H------HHHHHHHHHHHHhCCCChHHHH
Confidence            1      2235677788888888876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.72  E-value=2.2e-16  Score=136.70  Aligned_cols=193  Identities=7%  Similarity=-0.069  Sum_probs=111.8

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ  119 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~  119 (284)
                      .+|+...++..++.++...+..++|+..+.+++. .|.+    ..+|..++.++..+| ++++++.++++++..+|.+..
T Consensus        32 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~  109 (272)
T 3u4t_A           32 KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG-QDSLAIQQYQAAVDRDTTRLD  109 (272)
T ss_dssp             TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTH
T ss_pred             hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCcccHH
Confidence            4444555555555555555555666666666665 3322    233566666666655 366666666666666666666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      +|...+.++...|+  +++++.+++++++++|.+..+|.+++..+...+++++|+++++++++.+|.+..++..++.+..
T Consensus       110 ~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  187 (272)
T 3u4t_A          110 MYGQIGSYFYNKGN--FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA  187 (272)
T ss_dssp             HHHHHHHHHHHTTC--HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC--HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            66666666666665  6666666666666666666666666633333335666666666666666666666666555554


Q ss_pred             cCCC---Cchhh-----------------------------------hhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          200 RSPL---LGGLI-----------------------------------AMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       200 ~l~~---~~~~~-----------------------------------~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                      .++.   ++.+.                                   .-++++++++.+++.++|+|+.++-.++.+..
T Consensus       188 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          188 AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             HcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence            4433   11000                                   01477889999999999999988866555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.72  E-value=3.6e-16  Score=136.20  Aligned_cols=187  Identities=6%  Similarity=-0.095  Sum_probs=161.6

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-  117 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-  117 (284)
                      ..++|+...++...+..+...+..++|+..+++++..+|.+   ..+++.++.++..+| ++++++..+++++..+|++ 
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK-EYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHCCCCc
Confidence            34677778888888888888888899999999999999999   999999999999999 6999999999999998855 


Q ss_pred             --hHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhCcCChhHH-----------------hHHHHHHHHccCc
Q 023284          118 --YQLWHHRRWVAEK--------LGTGAVNKELQFTKKMLSLDAKNYHAW-----------------SYRQWVLQALGGW  170 (284)
Q Consensus       118 --~~aW~hR~~ll~~--------l~~~~~~eel~~~~~aL~~dpkN~~AW-----------------~~r~~vl~~l~~~  170 (284)
                        ..+++.++.++..        .|+  +++++..++++++.+|.+..++                 ..+|.++...|++
T Consensus        87 ~~~~a~~~lg~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  164 (261)
T 3qky_A           87 RVPQAEYERAMCYYKLSPPYELDQTD--TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY  164 (261)
T ss_dssp             THHHHHHHHHHHHHHHCCCTTSCCHH--HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHHHHhcccccccchh--HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence              6789999999999        888  9999999999999999998888                 8889999999999


Q ss_pred             HHHHHHHHHHHhccCCC---hHHHHHHHHHHhcCCCCch---hhhhHHHHHHHHHHHHhcCCCCccH
Q 023284          171 EDELDYCQMLLGEDIFN---NSAWNQRYFVVTRSPLLGG---LIAMRDSEVNFTIEAILGNPENESP  231 (284)
Q Consensus       171 ~eeL~~~~~~l~~dp~n---~sAW~~r~~ll~~l~~~~~---~~~~~~~el~~~~~~i~~~P~nesa  231 (284)
                      ++|+..++++++.+|.+   ..++..++.++..+|....   ...-+++++..+.+++..+|+++.+
T Consensus       165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            99999999999999984   5689999988877642210   0112588999999999999999753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.71  E-value=5.7e-17  Score=161.88  Aligned_cols=157  Identities=8%  Similarity=-0.100  Sum_probs=147.0

Q ss_pred             ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284           43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH  122 (284)
Q Consensus        43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~  122 (284)
                      ..+|++..++...+.++...+..++|++.++++++++|++..+|+.+|.++..+| ++++|+..+++++..+|.+..+|.
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~  505 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG-DYDSATKHFTEVLDTFPGELAPKL  505 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHH
Confidence            6779999999999988888888899999999999999999999999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      .++.++..+|+  +++ ++.++++++++|.+..+|++++.++..+|++++|+++++++++++|.+..||.+++.++...+
T Consensus       506 ~lg~~~~~~g~--~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          506 ALAATAELAGN--TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHHHHHHHHTC--CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHcCC--hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence            99999999999  999 999999999999999999999999999999999999999999999999999999999976544


Q ss_pred             C
Q 023284          203 L  203 (284)
Q Consensus       203 ~  203 (284)
                      .
T Consensus       583 ~  583 (681)
T 2pzi_A          583 S  583 (681)
T ss_dssp             -
T ss_pred             C
Confidence            3

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.71  E-value=1.6e-17  Score=134.50  Aligned_cols=142  Identities=6%  Similarity=-0.006  Sum_probs=127.7

Q ss_pred             HHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284           92 IIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE  171 (284)
Q Consensus        92 ~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~  171 (284)
                      +....| ++++++..+.+++..+|++..++++.+.++...|+  +++|+++++++++++|+|..+|+.+|.++..+|+++
T Consensus         6 ~~~~~~-~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            6 MRRSKA-DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             -CCCHH-HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcC-hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            333445 58999999999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHH-HHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN-FTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~-~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      +|+.++.++|+++|++..+|...+.++...++++       +++. +++++++++|+|+.+|..+..++...+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-------~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD-------GRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS-------SHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999998888763       3444 468999999999999988777776554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.71  E-value=2.2e-15  Score=130.14  Aligned_cols=148  Identities=8%  Similarity=-0.016  Sum_probs=132.5

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      +|....++...+.++...+..++|+.++.+++.++|++..+|...+.++...| ++++++.++++++..+|.+..+|..+
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l  117 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAHLNR  117 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCccccHHHHHH
Confidence            46788899999999998889999999999999999999999999999999999 69999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      +.++..+|+  +++++.+++++++++|.+..+....+.. ...|++++|+..+.+++..+|.+...|...+.
T Consensus       118 a~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  186 (275)
T 1xnf_A          118 GIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF  186 (275)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHH
T ss_pred             HHHHHHhcc--HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            999999999  9999999999999999998776666544 55588999999999999988888666654333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=1.4e-15  Score=142.28  Aligned_cols=205  Identities=12%  Similarity=0.061  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-----
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICL---------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN-----  114 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l---------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-----  114 (284)
                      ..+++..+.+....+..++|++.+.+++.+         +|....+|++++.+...+| ++++++.++++++.+.     
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhccc
Confidence            456778888888889999999999999987         7788899999999999999 6999999999999863     


Q ss_pred             ---CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHH---HccCcHHHHHHHHHHHhccCCCh
Q 023284          115 ---SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQ---ALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       115 ---pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~---~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                         +....++..+|+.+..+|...+++|+++++++++++|.|..++...+.+..   .++..+++++.+.++++++|.+.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~  209 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ  209 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence               456788999999999887656999999999999999999999999988754   45677899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      .++...+..+..++...+.   +++++.++.+++..+|++..+|..++.++...+.    ...++..+.++++
T Consensus       210 ~~~~~l~~~~~~~~~~~~~---~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~----~~~A~~~~~~al~  275 (472)
T 4g1t_A          210 YLKVLLALKLHKMREEGEE---EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE----PDKAIELLKKALE  275 (472)
T ss_dssp             HHHHHHHHHHHHCC---------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc----hHHHHHHHHHHHH
Confidence            9999999887776543221   3567888889999999999998888777766543    4556666666544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.3e-16  Score=148.07  Aligned_cols=203  Identities=11%  Similarity=0.061  Sum_probs=152.1

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      .+|+ ..++...+.++...+..++|+..+++++..+|.+..+|..++.++...| ++++++..+++++..+|++..+|..
T Consensus       266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~  343 (514)
T 2gw1_A          266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ-NYDQAGKDFDKAKELDPENIFPYIQ  343 (514)
T ss_dssp             HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT-CTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred             hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhChhhHHHHHH
Confidence            4455 5555555666666666666777777777777777777777777666666 4777777778888778877777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH------HHHHHHHH
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS------AWNQRYFV  197 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s------AW~~r~~l  197 (284)
                      .+.++...|+  +++++.+++++++.+|.+..+|..++.++...|++++|+.+++++++.+|.+..      +|..++.+
T Consensus       344 l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~  421 (514)
T 2gw1_A          344 LACLAYRENK--FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL  421 (514)
T ss_dssp             HHHHTTTTTC--HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            7777777777  888888888888888888888888888888888888888888888888888755      78888887


Q ss_pred             Hhc---CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          198 VTR---SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       198 l~~---l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      +..   .+.       +++++.++.+++..+|++..+|..+..++...++    ..++...+.++++
T Consensus       422 ~~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~a~~  477 (514)
T 2gw1_A          422 LTRNPTVEN-------FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED----IDEAITLFEESAD  477 (514)
T ss_dssp             HHTSCCTTH-------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred             HhhhhhcCC-------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC----HHHHHHHHHHHHH
Confidence            777   665       4788999999999999999999888877776543    4455555555543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.71  E-value=1.7e-16  Score=151.72  Aligned_cols=182  Identities=12%  Similarity=0.074  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDL-QDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK  144 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~-~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~  144 (284)
                      ++++..++.++...|.+..+|+.+|.++...| ++ +++++++++++..+|++..+|...+.++...|+  +++|+.+++
T Consensus        85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~  161 (474)
T 4abn_A           85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTP-DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD--VTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSS-SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            57888889999999999999999999999999 58 999999999999999999999999999999999  999999999


Q ss_pred             HHHHhCcCChhHHhHHHHHHHHc---------cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC--------CCCchh
Q 023284          145 KMLSLDAKNYHAWSYRQWVLQAL---------GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS--------PLLGGL  207 (284)
Q Consensus       145 ~aL~~dpkN~~AW~~r~~vl~~l---------~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l--------~~~~~~  207 (284)
                      ++++++|. ..+|...+.++..+         |++++|+++++++++++|.+..+|+.+|.++..+        ++    
T Consensus       162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~----  236 (474)
T 4abn_A          162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI----  236 (474)
T ss_dssp             HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH----
T ss_pred             HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch----
Confidence            99999999 79999999999999         9999999999999999999999999999998766        43    


Q ss_pred             hhhHHHHHHHHHHHHhcCC---CCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          208 IAMRDSEVNFTIEAILGNP---ENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       208 ~~~~~~el~~~~~~i~~~P---~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                         ++++++++.+++.++|   ++..+|+.++.++...+    ++.+++..+.++++-
T Consensus       237 ---~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~l  287 (474)
T 4abn_A          237 ---SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE----SYGEALEGFSQAAAL  287 (474)
T ss_dssp             ---HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence               5889999999999999   99999998888887764    356777777777553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=2.4e-15  Score=134.90  Aligned_cols=185  Identities=12%  Similarity=-0.010  Sum_probs=162.9

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH  122 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~  122 (284)
                      +|....++......+...+..++|++.+++++..  +|++.+++..++.++...| +++++++.+++     |.+..++.
T Consensus        61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g-~~~~Al~~l~~-----~~~~~~~~  134 (291)
T 3mkr_A           61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ-NPDAALRTLHQ-----GDSLECMA  134 (291)
T ss_dssp             SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT-CHHHHHHHHTT-----CCSHHHHH
T ss_pred             CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC-CHHHHHHHHhC-----CCCHHHHH
Confidence            4556677778888888888889999999999986  6999999999999999999 69999999988     99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH--HHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL--QALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl--~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      .++.++..+|+  +++++..++++++.+|.+...-...+|+-  ...|++++|+..++++++.+|.+..+|+.++.++..
T Consensus       135 ~l~~~~~~~g~--~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~  212 (291)
T 3mkr_A          135 MTVQILLKLDR--LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA  212 (291)
T ss_dssp             HHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCC--HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99999999999  99999999999999999865444444332  344789999999999999999999999999999999


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284          201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE  244 (284)
Q Consensus       201 l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~  244 (284)
                      +|++       +++++.+.++|.++|+|..+|+.++.++...++
T Consensus       213 ~g~~-------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          213 QGRW-------EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             TTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9984       889999999999999999999998888777654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.70  E-value=3.9e-16  Score=146.55  Aligned_cols=187  Identities=9%  Similarity=-0.044  Sum_probs=174.8

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +...|+...++...+.++...+..++|+..+++++.++|.+..+|..++.++...| ++++++.++++++..+|.+..+|
T Consensus       297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~  375 (514)
T 2gw1_A          297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN-KFDDCETLFSEAKRKFPEAPEVP  375 (514)
T ss_dssp             HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT-CHHHHHHHHHHHHHHSTTCSHHH
T ss_pred             hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcccCHHHH
Confidence            45678888899999999988888999999999999999999999999999999999 69999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHH---ccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQA---LGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~---l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      ...+.++...|+  +++++.++.++++++|.+..      +|..++.++..   .|++++|+.+++++++.+|.+..+|.
T Consensus       376 ~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  453 (514)
T 2gw1_A          376 NFFAEILTDKND--FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI  453 (514)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHCCC--HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            999999999999  99999999999999999966      99999999999   99999999999999999999999999


Q ss_pred             HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284          193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL  238 (284)
Q Consensus       193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l  238 (284)
                      .++.++...|++       +++++++.+++.++|++..+|..+...
T Consensus       454 ~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~  492 (514)
T 2gw1_A          454 GLAQMKLQQEDI-------DEAITLFEESADLARTMEEKLQAITFA  492 (514)
T ss_dssp             HHHHHHHHTTCH-------HHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCH-------HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            999999999884       789999999999999999998766443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.70  E-value=1.1e-15  Score=144.74  Aligned_cols=56  Identities=21%  Similarity=0.247  Sum_probs=36.5

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH   97 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~   97 (284)
                      |..+|+...++..++.++...+..++|+..+++++.++|++..+|..++.++..+|
T Consensus        52 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  107 (537)
T 3fp2_A           52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG  107 (537)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence            44566666666666666666666666777777777777777666666666655543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.69  E-value=1e-15  Score=148.59  Aligned_cols=162  Identities=10%  Similarity=-0.042  Sum_probs=132.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF  142 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~  142 (284)
                      +..++|+++++++++++|++..+|+.++.++...| +++++++.+++++..+|++..+|...+.++..+|+  +++++++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~   79 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMG-DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--HAEAAVL   79 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHH
Confidence            34578999999999999999999999999999988 69999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS---PLLGGLIAMRDSEVNFTI  219 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l---~~~~~~~~~~~~el~~~~  219 (284)
                      ++++++++|.+..+|...+.++..+|++++|+++++++++.+|.+..++..++.++..+   ++       ++++++.+.
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~-------~~~A~~~~~  152 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA-------LDVLSAQVR  152 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT-------HHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-------HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888   55       477889999


Q ss_pred             HHHhcCCCCccHHHH
Q 023284          220 EAILGNPENESPWRY  234 (284)
Q Consensus       220 ~~i~~~P~nesaW~y  234 (284)
                      ++++.+|++..++..
T Consensus       153 ~al~~~p~~~~~~~~  167 (568)
T 2vsy_A          153 AAVAQGVGAVEPFAF  167 (568)
T ss_dssp             HHHHHTCCCSCHHHH
T ss_pred             HHHhcCCcccChHHH
Confidence            999999998877743

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.67  E-value=3.3e-16  Score=128.02  Aligned_cols=127  Identities=6%  Similarity=-0.081  Sum_probs=115.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284           52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l  131 (284)
                      ......++..++.       +.+++.++|++..+|+.+|.++...| ++++++.++++++..+|++..+|..+|.++..+
T Consensus        12 ~~~l~~~~~~~~~-------l~~al~l~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~   83 (151)
T 3gyz_A           12 STAVIDAINSGAT-------LKDINAIPDDMMDDIYSYAYDFYNKG-RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK   83 (151)
T ss_dssp             HHHHHHHHHTSCC-------TGGGCCSCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCC-------HHHHhCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3344445554443       45678889999999999999999999 599999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          132 GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      |+  +++++.+++++++++|.|..+|+++|.++..+|++++|+.+++++++++|...
T Consensus        84 g~--~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           84 EQ--FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             TC--HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cc--HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99  99999999999999999999999999999999999999999999999999764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.66  E-value=1.2e-14  Score=125.48  Aligned_cols=165  Identities=8%  Similarity=-0.031  Sum_probs=144.8

Q ss_pred             CCHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 023284           64 RSSRSFQLTKEAICL----NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKE  139 (284)
Q Consensus        64 ~s~~aL~~~~~~L~l----nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ee  139 (284)
                      ..++|+..+++++..    +|.+..+|..++.++...| ++++++.++++++..+|++..+|...+.++...|+  ++++
T Consensus        20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--~~~A   96 (275)
T 1xnf_A           20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--FDAA   96 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred             hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC--HHHH
Confidence            347899999999987    4678899999999999999 69999999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 023284          140 LQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI  219 (284)
Q Consensus       140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~  219 (284)
                      +.+++++++++|.+..+|..++.++..+|++++|+.+++++++.+|.+..+....+.... .++       +++++..+.
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~-------~~~A~~~~~  168 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-KLD-------EKQAKEVLK  168 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHC-------HHHHHHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-hcC-------HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876665554432 243       477888888


Q ss_pred             HHHhcCCCCccHHHHHHHHH
Q 023284          220 EAILGNPENESPWRYLRGLY  239 (284)
Q Consensus       220 ~~i~~~P~nesaW~y~~~ll  239 (284)
                      +++...|.+...|......+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~  188 (275)
T 1xnf_A          169 QHFEKSDKEQWGWNIVEFYL  188 (275)
T ss_dssp             HHHHHSCCCSTHHHHHHHHT
T ss_pred             HHHhcCCcchHHHHHHHHHH
Confidence            89988888887776444433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.65  E-value=1.7e-16  Score=129.75  Aligned_cols=116  Identities=9%  Similarity=-0.087  Sum_probs=110.9

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284          105 AFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       105 ~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      ..+.+++.++|++..+|+.+|.++...|+  +++++.+++++++++|.|..+|+.+|.++..+|++++|+++++++++++
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGR--IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            45678899999999999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284          185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE  229 (284)
Q Consensus       185 p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne  229 (284)
                      |.|..+|+++|.++..+|++       ++++.++++++.+.|+.+
T Consensus       101 P~~~~~~~~lg~~~~~lg~~-------~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAP-------LKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCCCHH
T ss_pred             CCCcHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCHH
Confidence            99999999999999999984       889999999999999865

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.64  E-value=1.8e-14  Score=134.84  Aligned_cols=186  Identities=10%  Similarity=-0.033  Sum_probs=159.4

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHhCC
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLN--------PGNYTVWHFRRQIIETLHT-DLQDELAFVGRIAKSNS  115 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~ln--------P~~~~aW~~R~~~L~~l~~-~~~~eL~~~~~~l~~~p  115 (284)
                      .|....+++.++.++...+..++|+.++++++.++        +....++..+|+++..++. .+++|+.+|++++.++|
T Consensus        90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            34445566677777777888899999999999874        4567899999999888763 58999999999999999


Q ss_pred             CChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc----CcHHHHHHHHHHHhccCCCh
Q 023284          116 KNYQLWHHRRWVAEKL---GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG----GWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       116 kn~~aW~hR~~ll~~l---~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~----~~~eeL~~~~~~l~~dp~n~  188 (284)
                      ++..++...+.+...+   ++  .+++++.+.++++++|.+..++...+..+..++    .+++++.++++++..+|.+.
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~--~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~  247 (472)
T 4g1t_A          170 KNPEFTSGLAIASYRLDNWPP--SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT  247 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH
T ss_pred             CCHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH
Confidence            9999999998886544   55  678999999999999999999999998887664    57899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284          189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY  239 (284)
Q Consensus       189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll  239 (284)
                      .++.++|.++...+.+       +++++++.++++.+|++..+++.++.++
T Consensus       248 ~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~p~~~~~~~~lg~~y  291 (472)
T 4g1t_A          248 DVLRSAAKFYRRKDEP-------DKAIELLKKALEYIPNNAYLHCQIGCCY  291 (472)
T ss_dssp             HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCch-------HHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            9999999999999884       7899999999999999999987776554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.63  E-value=2.8e-14  Score=137.15  Aligned_cols=224  Identities=7%  Similarity=-0.032  Sum_probs=180.9

Q ss_pred             eecChhHHHHHHHHHHHHhc-------CCCCH-------HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhhCHHHHHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYS-------DERSS-------RSFQLTKEAIC-LNPGNYTVWHFRRQIIETLHTDLQDELAF  106 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~-------~~~s~-------~aL~~~~~~L~-lnP~~~~aW~~R~~~L~~l~~~~~~eL~~  106 (284)
                      |..+|.+.++|..++.++..       .+..+       +|+.++++++. ++|++..+|...+.++...| +++++...
T Consensus       265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g-~~~~A~~~  343 (530)
T 2ooe_A          265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM-KYEKVHSI  343 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            45688999999998888764       45555       89999999997 89999999999999999999 69999999


Q ss_pred             HHHHHHhCCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH-HHHccCcHHHHHHHHHHHhcc
Q 023284          107 VGRIAKSNSKNY-QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       107 ~~~~l~~~pkn~-~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v-l~~l~~~~eeL~~~~~~l~~d  184 (284)
                      +++++..+|+++ .+|...+.++.+.|+  ++++++.++++++..|.+++.|...+++ +...|+.++|...++++|+.+
T Consensus       344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~  421 (530)
T 2ooe_A          344 YNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY  421 (530)
T ss_dssp             HHHHHHSSSSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCccccCchHHHHHHHHHHHHhcC--HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence            999999999996 699999999999988  9999999999999999999988877766 346899999999999999999


Q ss_pred             CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc----HHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284          185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES----PWRYLRGLYKDDTESWINDPRMLLSVFESF  260 (284)
Q Consensus       185 p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes----aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  260 (284)
                      |++..+|...+.++.++|..       +++...+++++...|.++.    .|..........|+    ...+......++
T Consensus       422 p~~~~~~~~~~~~~~~~g~~-------~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~----~~~~~~~~~r~~  490 (530)
T 2ooe_A          422 GDIPEYVLAYIDYLSHLNED-------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD----LASILKVEKRRF  490 (530)
T ss_dssp             TTCHHHHHHHHHHHTTTTCH-------HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC----HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCH-------hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence            99999999999998888874       6788899999998887665    88554444444332    233333222221


Q ss_pred             h--c-----cccccccccCCCCcCCc
Q 023284          261 E--Y-----QKQLCFCSEHTFRSYLP  279 (284)
Q Consensus       261 ~--~-----~~~~~~~~~~~~~~~~~  279 (284)
                      +  |     .....|-++..|..+.|
T Consensus       491 ~~~p~~~~~~~~~~~~~r~~~~~~~~  516 (530)
T 2ooe_A          491 TAFREEYEGKETALLVDRYKFMDLYP  516 (530)
T ss_dssp             HHTHHHHTTCHHHHHGGGTCBTTBCS
T ss_pred             HHCchhccCchHHHHHHHHHhcccCC
Confidence            1  1     12246777777777776

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=7.2e-15  Score=118.71  Aligned_cols=122  Identities=4%  Similarity=-0.170  Sum_probs=114.5

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 023284           71 LTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD  150 (284)
Q Consensus        71 ~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d  150 (284)
                      .+.+++.++|++..+++.++.++...| ++++++.++++++..+|.+..+|..+|.++..+|+  +++++.+++++++++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSG-XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--YDLAIHSYSYGAVMD   85 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcC
Confidence            467889999999999999999999999 69999999999999999999999999999999999  999999999999999


Q ss_pred             cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284          151 AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY  195 (284)
Q Consensus       151 pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~  195 (284)
                      |.+..+|+++|.++..+|++++|+++++++++++|.+......+.
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence            999999999999999999999999999999999999876654443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.62  E-value=3.5e-15  Score=126.63  Aligned_cols=146  Identities=13%  Similarity=0.008  Sum_probs=126.4

Q ss_pred             eeecChhHHHHHHH----------------HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHH
Q 023284           41 PIAYKPEFSETMSY----------------FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDEL  104 (284)
Q Consensus        41 ~I~~~p~~~~a~~~----------------~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL  104 (284)
                      .|..+|++..++..                ++.++...+..++|+..++++|+++|++..+|..+|.++..+| ++++++
T Consensus        30 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~  108 (208)
T 3urz_A           30 TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG-QEKDAL  108 (208)
T ss_dssp             HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHH
T ss_pred             HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHH
Confidence            46678999999988                8999999999999999999999999999999999999999999 699999


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284          105 AFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       105 ~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      .++++++.++|++..+|+.+|.++...|......+...+.+++..+|.. .+|+++|.+...+|++++|+++++++|+++
T Consensus       109 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999987665422455667788877655543 478999999999999999999999999999


Q ss_pred             CCCh
Q 023284          185 IFNN  188 (284)
Q Consensus       185 p~n~  188 (284)
                      |++.
T Consensus       188 P~~~  191 (208)
T 3urz_A          188 PSTE  191 (208)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            9753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.62  E-value=5.1e-14  Score=120.57  Aligned_cols=171  Identities=9%  Similarity=-0.078  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH---HHHH
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY---TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ---LWHH  123 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~---~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~---aW~h  123 (284)
                      .++...+..+...+..++|+..+++++..+|.+.   .+++.++.++...| ++++++..+++++..+|++..   +++.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            3444555566666777999999999999999874   79999999999999 699999999999999999985   8999


Q ss_pred             HHHHHHHh------------------CCCCHHHHHHHHHHHHHhCcCChhHH-----------------hHHHHHHHHcc
Q 023284          124 RRWVAEKL------------------GTGAVNKELQFTKKMLSLDAKNYHAW-----------------SYRQWVLQALG  168 (284)
Q Consensus       124 R~~ll~~l------------------~~~~~~eel~~~~~aL~~dpkN~~AW-----------------~~r~~vl~~l~  168 (284)
                      +|.++..+                  |+  +++++..++++++.+|.+..++                 ..++.++...|
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQ--ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHC--------------CCHH--HHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHH--HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99988763                  34  8999999999999999999887                 46677888899


Q ss_pred             CcHHHHHHHHHHHhccCCCh---HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          169 GWEDELDYCQMLLGEDIFNN---SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       169 ~~~eeL~~~~~~l~~dp~n~---sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      ++++|+..++++|+.+|++.   .++..++.++.++|+.       +++++.+..++...|++..
T Consensus       162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~-------~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN-------AQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHCCSCCCC
T ss_pred             cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc-------HHHHHHHHHHHhhCCCchh
Confidence            99999999999999999986   6799999999999984       7789999999999998754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.61  E-value=2.5e-15  Score=123.87  Aligned_cols=162  Identities=6%  Similarity=-0.040  Sum_probs=136.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE-  129 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~-  129 (284)
                      .....+..+...+..++|+..+++++.++|++..+|..++.++...| ++++++..+++++..+| +...+...+.+.. 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETK-QFELAQELLATIPLEYQ-DNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT-CHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence            34445555666677799999999999999999999999999999999 69999999999999999 8777666554422 


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC--hHHHHHHHHHHhcCCCCchh
Q 023284          130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN--NSAWNQRYFVVTRSPLLGGL  207 (284)
Q Consensus       130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n--~sAW~~r~~ll~~l~~~~~~  207 (284)
                      ..+.  ..+++..++++++++|.|..+|...+.++...|++++|+..+.++++.+|.+  ..+|...+.++..+|+.   
T Consensus        86 ~~~~--~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~---  160 (176)
T 2r5s_A           86 QQAA--ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG---  160 (176)
T ss_dssp             HHHT--SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS---
T ss_pred             hhcc--cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC---
Confidence            2222  2357999999999999999999999999999999999999999999999986  55999999999999886   


Q ss_pred             hhhHHHHHHHHHHHHh
Q 023284          208 IAMRDSEVNFTIEAIL  223 (284)
Q Consensus       208 ~~~~~~el~~~~~~i~  223 (284)
                          ++++..+.++|.
T Consensus       161 ----~~A~~~y~~al~  172 (176)
T 2r5s_A          161 ----NAIASKYRRQLY  172 (176)
T ss_dssp             ----CHHHHHHHHHHH
T ss_pred             ----CcHHHHHHHHHH
Confidence                445666666653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.61  E-value=3.8e-16  Score=142.90  Aligned_cols=161  Identities=14%  Similarity=0.001  Sum_probs=143.2

Q ss_pred             cceeecChhHHHHHHHHHHHHh------------cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHH
Q 023284           39 VVPIAYKPEFSETMSYFRAVYY------------SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF  106 (284)
Q Consensus        39 ~~~I~~~p~~~~a~~~~r~~~~------------~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~  106 (284)
                      .+.|.++|++  +++.++....            .....++|++.+..++..+|++..+|+.+|.++...| ++++|+.+
T Consensus        93 ~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g-~~~~A~~~  169 (336)
T 1p5q_A           93 HSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEG-KYKQALLQ  169 (336)
T ss_dssp             EEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred             eEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
Confidence            3477888887  5555443221            2223357888889999999999999999999999999 69999999


Q ss_pred             HHHHHHhCCCC---------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284          107 VGRIAKSNSKN---------------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE  171 (284)
Q Consensus       107 ~~~~l~~~pkn---------------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~  171 (284)
                      +++++..+|.+               ..+|..++.++..+|+  +++++.+++++|+++|.|..+|+.++.++..+|+++
T Consensus       170 y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  247 (336)
T 1p5q_A          170 YKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE  247 (336)
T ss_dssp             HHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            99999999999               6999999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      +|+.+++++++++|.|..++..++.++..++++
T Consensus       248 ~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=5.9e-15  Score=117.48  Aligned_cols=125  Identities=7%  Similarity=-0.158  Sum_probs=113.2

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           70 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      ..+.+++.++|++..+++.++.++...| ++++++..+++++..+|.+..+|...+.++..+|+  +++++.++++++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~   81 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAG-KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--YEQALQSYSYGALM   81 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhc
Confidence            4567788999999999999999999999 69999999999999999999999999999999999  99999999999999


Q ss_pred             CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284          150 DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       150 dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l  197 (284)
                      +|.|..+|++++.++..+|++++|+.+++++++++|.+...+..+..+
T Consensus        82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999999999999999999988776555444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.60  E-value=1.5e-14  Score=129.15  Aligned_cols=168  Identities=11%  Similarity=0.008  Sum_probs=149.3

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      .|+..+++...+..+...+..++|+..+++++.++|++..++...+.++...| ++++++..+++++..+|.+...+...
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALN-RSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT-CHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC-CHHHHHHHHHhCchhhcchHHHHHHH
Confidence            36667777777777777888899999999999999999999999999999999 59999999999999999877777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC--hHHHHHHHHHHhcCC
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN--NSAWNQRYFVVTRSP  202 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n--~sAW~~r~~ll~~l~  202 (284)
                      +..+...+.  ..+++..+.++++.+|.|..+++..+.++...|++++|++.+.++++.+|++  ..++...+.++..+|
T Consensus       192 ~~~l~~~~~--~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          192 QIELLXQAA--DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHT--SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHhhcc--cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            777777777  7789999999999999999999999999999999999999999999999999  889999999999998


Q ss_pred             CCchhhhhHHHHHHHHHHHH
Q 023284          203 LLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       203 ~~~~~~~~~~~el~~~~~~i  222 (284)
                      +.+       +++..+.++|
T Consensus       270 ~~~-------~a~~~~r~al  282 (287)
T 3qou_A          270 TGD-------ALASXYRRQL  282 (287)
T ss_dssp             TTC-------HHHHHHHHHH
T ss_pred             CCC-------cHHHHHHHHH
Confidence            864       4555566555

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=3.3e-14  Score=110.07  Aligned_cols=118  Identities=11%  Similarity=0.028  Sum_probs=107.8

Q ss_pred             CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284           80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY  159 (284)
Q Consensus        80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~  159 (284)
                      |....+|..+|..+...| ++++++.++++++..+|.+..+|..++.++..+|+  +++++..++++++++|.+..+|..
T Consensus         1 p~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHH
Confidence            566788999999999988 69999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHhcc------CCChHHHHHHHHHHhc
Q 023284          160 RQWVLQALGGWEDELDYCQMLLGED------IFNNSAWNQRYFVVTR  200 (284)
Q Consensus       160 r~~vl~~l~~~~eeL~~~~~~l~~d------p~n~sAW~~r~~ll~~  200 (284)
                      +|.++..+|++++|++++.++++++      |.|..++.....+..+
T Consensus        78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999      8888888877766544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.59  E-value=1e-14  Score=120.23  Aligned_cols=109  Identities=11%  Similarity=0.016  Sum_probs=98.4

Q ss_pred             cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK-------NYQ-----LWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk-------n~~-----aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                      ....|..+|..+..+| ++++++.+|+++|.++|.       +..     +|++|+.++..+|+  +++++.+++++|++
T Consensus        10 ~a~~~~~~G~~l~~~g-~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--~~eAl~~~~kAL~l   86 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAG-EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--FDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHh
Confidence            3566788888888888 599999999999999999       444     99999999999999  99999999999999


Q ss_pred             -------CcCChhHH----hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284          150 -------DAKNYHAW----SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ  193 (284)
Q Consensus       150 -------dpkN~~AW----~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~  193 (284)
                             +|.+..+|    ++||.++..+|++++|+++|+++|+++|.+.....-
T Consensus        87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~  141 (159)
T 2hr2_A           87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG  141 (159)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred             hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                   99999999    999999999999999999999999999998765443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.58  E-value=1.1e-13  Score=111.49  Aligned_cols=146  Identities=12%  Similarity=0.104  Sum_probs=136.8

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +...|+...++...+.++...+..++|+.++.+++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~  113 (186)
T 3as5_A           35 YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVR  113 (186)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcHhHHHH
Confidence            34566677888888888888888899999999999999999999999999999999 69999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA  190 (284)
                      ...+.++...|+  +++++.++.++++.+|.+..+|...+.++...|++++|+.+++++++.+|.+..+
T Consensus       114 ~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          114 FRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred             HHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence            999999999999  9999999999999999999999999999999999999999999999999988654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.58  E-value=6.4e-14  Score=124.92  Aligned_cols=177  Identities=7%  Similarity=-0.044  Sum_probs=145.9

Q ss_pred             hh-HHHHHHHH---HHHHhcCCCCHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC
Q 023284           46 PE-FSETMSYF---RAVYYSDERSSRSFQLTKEAICLNPG------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS  115 (284)
Q Consensus        46 p~-~~~a~~~~---r~~~~~~~~s~~aL~~~~~~L~lnP~------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p  115 (284)
                      |+ +..|...+   +.++...+..++|+.++.+++.+.++      ...+|+..|.++..+| ++++++.++++++.+.|
T Consensus        30 ~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~~  108 (292)
T 1qqe_A           30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-NSVNAVDSLENAIQIFT  108 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence            65 66665554   34566678889999999999998543      2689999999999999 69999999999999988


Q ss_pred             CC------hHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHh
Q 023284          116 KN------YQLWHHRRWVAEKL-GTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLG  182 (284)
Q Consensus       116 kn------~~aW~hR~~ll~~l-~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~  182 (284)
                      +.      ..++...+.++... |+  +++++.++++++++.|.+      ..++...|.++..+|++++|+++++++++
T Consensus       109 ~~g~~~~~a~~~~~lg~~~~~~lg~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          109 HRGQFRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            65      56899999999995 99  999999999999999876      46789999999999999999999999999


Q ss_pred             ccCCChH-------HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284          183 EDIFNNS-------AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       183 ~dp~n~s-------AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW  232 (284)
                      ++|.+..       ++..+|.++..++++       ++++.++++++.++|+...+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDA-------VAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCH-------HHHHHHHHGGGCC--------
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCCCCCCcH
Confidence            9998764       577888888888874       789999999999999987654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.58  E-value=1.8e-14  Score=116.35  Aligned_cols=121  Identities=9%  Similarity=-0.082  Sum_probs=113.8

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284          105 AFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       105 ~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      ..+++++..+|++..+|+.++.++...|+  +++++.++.++++++|.|..+|+.+|.++..+|++++|++++++++.++
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGX--YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            35688999999999999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284          185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY  234 (284)
Q Consensus       185 p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y  234 (284)
                      |.+..+|+++|.++..+|++       +++++++.+++.++|+++.....
T Consensus        86 p~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~  128 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGEL-------AEAESGLFLAQELIANXPEFXEL  128 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             CCCchHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHCcCCCcchHH
Confidence            99999999999999999984       78999999999999998876433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.57  E-value=9e-13  Score=114.96  Aligned_cols=144  Identities=10%  Similarity=0.021  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET----LHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~----l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      |.+..++...+.++...+..++|+.++.+++.  |.+..+++..+.++..    .+ ++++++.++++++..+  +..++
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC--CHHHH
Confidence            44455555555555555555666666666665  5555666666666655    55 4666666666666554  55666


Q ss_pred             HHHHHHHHH----hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284          122 HHRRWVAEK----LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNSAWNQ  193 (284)
Q Consensus       122 ~hR~~ll~~----l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~sAW~~  193 (284)
                      +..+.++..    .++  +++++.++.++++.+  +..+++..+.++..    .+++++|+++++++++.+  +..++.+
T Consensus        78 ~~lg~~~~~g~~~~~~--~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQN--TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCC--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             HHHHHHHhCCCCcccC--HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence            666666665    555  666666666666553  55666666666665    566666666666666554  4555555


Q ss_pred             HHHHHhc
Q 023284          194 RYFVVTR  200 (284)
Q Consensus       194 r~~ll~~  200 (284)
                      .+.++..
T Consensus       152 lg~~~~~  158 (273)
T 1ouv_A          152 LGSLYDA  158 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            5555544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.57  E-value=6.7e-14  Score=121.71  Aligned_cols=177  Identities=6%  Similarity=-0.108  Sum_probs=148.0

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Q 023284           75 AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA  151 (284)
Q Consensus        75 ~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp  151 (284)
                      ...++|.+..+++.++..+...| ++++++..+++++..+|.+   ..+|+.+|.++...|+  +++++..++++++++|
T Consensus         7 ~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~p   83 (261)
T 3qky_A            7 SGRLRHSSPQEAFERAMEFYNQG-KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--YLLAASEYERFIQIYQ   83 (261)
T ss_dssp             ----CCSSHHHHHHHHHHHHHTT-CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHCC
Confidence            34678999999999999999999 6999999999999999999   9999999999999999  9999999999999988


Q ss_pred             CC---hhHHhHHHHHHHH--------ccCcHHHHHHHHHHHhccCCChHHH-----------------HHHHHHHhcCCC
Q 023284          152 KN---YHAWSYRQWVLQA--------LGGWEDELDYCQMLLGEDIFNNSAW-----------------NQRYFVVTRSPL  203 (284)
Q Consensus       152 kN---~~AW~~r~~vl~~--------l~~~~eeL~~~~~~l~~dp~n~sAW-----------------~~r~~ll~~l~~  203 (284)
                      .+   ..+++.+|.++..        .|++++|+..++++++.+|.+..++                 ..+|.++...++
T Consensus        84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  163 (261)
T 3qky_A           84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL  163 (261)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            55   5789999999999        9999999999999999999998877                 777888888887


Q ss_pred             CchhhhhHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHccCCcc------CCCChhhHHHHHhhhh
Q 023284          204 LGGLIAMRDSEVNFTIEAILGNPENE---SPWRYLRGLYKDDTES------WINDPRMLLSVFESFE  261 (284)
Q Consensus       204 ~~~~~~~~~~el~~~~~~i~~~P~ne---saW~y~~~ll~~~~~~------~~~~~~~~~~~~~~~~  261 (284)
                      +       ++++..+.+++..+|++.   .++..++.++...+..      .++..+++..+.+.++
T Consensus       164 ~-------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          164 Y-------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             H-------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            4       889999999999999965   3777776666544221      1334556666655544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.57  E-value=1.1e-14  Score=120.16  Aligned_cols=106  Identities=8%  Similarity=-0.006  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-------Chh-----HHhHHHHHHHHccCcHHHHHHHHHHHhc--
Q 023284          118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK-------NYH-----AWSYRQWVLQALGGWEDELDYCQMLLGE--  183 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk-------N~~-----AW~~r~~vl~~l~~~~eeL~~~~~~l~~--  183 (284)
                      ...|..+|..+..+|+  +++++.+|+++|+++|.       +..     +|++++.++..+|++++|+.+++++|++  
T Consensus        11 a~~~~~~G~~l~~~g~--~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGE--YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC--HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            3467889999999999  99999999999999999       444     9999999999999999999999999999  


Q ss_pred             -----cCCChHHH----HHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284          184 -----DIFNNSAW----NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       184 -----dp~n~sAW----~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW  232 (284)
                           +|++..||    ++||.++..++++       ++++++++++|+++|++....
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~-------eEAl~~y~kAlel~p~d~~~~  139 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRG-------AEAMPEFKKVVEMIEERKGET  139 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHCCSCC
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCH-------HHHHHHHHHHHhcCCCcHHHH
Confidence                 99999999    9999999999995       889999999999999998754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.57  E-value=7.1e-14  Score=113.42  Aligned_cols=118  Identities=9%  Similarity=0.004  Sum_probs=110.2

Q ss_pred             hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284           78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus        78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      .++.+..+|+.++.++...| ++++++.++++++..+|.+..+|..++.++..+|+  +++++.+++++++++|.+..+|
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~   82 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARK-EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--HEKAAEDAELATVVDPKYSKAW   82 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHH
Confidence            35677889999999999999 69999999999999999999999999999999999  9999999999999999999999


Q ss_pred             hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      +.++.++..+|++++|+.++.++++++|.|..+|..++...
T Consensus        83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999998887653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.55  E-value=9.6e-14  Score=134.62  Aligned_cols=152  Identities=6%  Similarity=-0.044  Sum_probs=139.8

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      .+..+|++..++...+.++...+..++|++.+++++.++|++..+|..++.++..+| +++++++++++++..+|++..+
T Consensus        15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~   93 (568)
T 2vsy_A           15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ-RHAEAAVLLQQASDAAPEHPGI   93 (568)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHH
Confidence            366789999999999999998888899999999999999999999999999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc---cCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL---GGWEDELDYCQMLLGEDIFNNSAWNQRY  195 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l---~~~~eeL~~~~~~l~~dp~n~sAW~~r~  195 (284)
                      |...+.++..+|+  +++++++++++++++|.+..++...+.++..+   |++++|++.++++++.+|.+.+++...+
T Consensus        94 ~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A           94 ALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            9999999999999  99999999999999999999999999999999   9999999999999999999988875443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.54  E-value=1.5e-15  Score=144.63  Aligned_cols=162  Identities=10%  Similarity=0.004  Sum_probs=138.7

Q ss_pred             CcceeecChhHHHHHHHHHHHHh------------cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHH
Q 023284           38 PVVPIAYKPEFSETMSYFRAVYY------------SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELA  105 (284)
Q Consensus        38 ~~~~I~~~p~~~~a~~~~r~~~~------------~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~  105 (284)
                      ..+.|.++|++  +++.++....            .....++|++.++.++..+|++..+|+.+|.++...+ ++++|+.
T Consensus       213 e~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g-~~~~A~~  289 (457)
T 1kt0_A          213 EQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGG-KYMQAVI  289 (457)
T ss_dssp             CEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             CEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCC-CHHHHHH
Confidence            34578889986  4444332111            1223357888889999999999999999999999999 6999999


Q ss_pred             HHHHHHHhCCCC---------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284          106 FVGRIAKSNSKN---------------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW  170 (284)
Q Consensus       106 ~~~~~l~~~pkn---------------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~  170 (284)
                      +|++++..+|.+               ..+|++++.++.++|+  +++|+.+|+++|+++|.|..+|++++.++..++++
T Consensus       290 ~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~  367 (457)
T 1kt0_A          290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF  367 (457)
T ss_dssp             HHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH
Confidence            999999999999               6999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          171 EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       171 ~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      ++|+.+++++++++|.|..++..++.++..++++
T Consensus       368 ~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          368 ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998877654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.54  E-value=4.1e-13  Score=119.72  Aligned_cols=160  Identities=8%  Similarity=-0.059  Sum_probs=147.0

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284           75 AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY  154 (284)
Q Consensus        75 ~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~  154 (284)
                      +...-|++..++...+..+...| ++++++..+++++..+|++..++...+.++...|+  +++++..+++++..+|.+.
T Consensus       109 l~~~lp~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          109 LDXVLPREEELXAQQAMQLMQES-NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--SEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--HHHHHHHHTTSCGGGCSHH
T ss_pred             HHHHcCCchhhHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--HHHHHHHHHhCchhhcchH
Confidence            33445999999999999999999 69999999999999999999999999999999999  9999999999999999888


Q ss_pred             hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC--ccHH
Q 023284          155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN--ESPW  232 (284)
Q Consensus       155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n--esaW  232 (284)
                      ..+...+..+...+..++|++.+.++++.+|+|..++..++.++...+++       +++++.+.++++.+|++  ..+|
T Consensus       186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-------~~A~~~l~~~l~~~p~~~~~~a~  258 (287)
T 3qou_A          186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-------EEALELLFGHLRXDLTAADGQTR  258 (287)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTGGGGHHH
T ss_pred             HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-------HHHHHHHHHHHhcccccccchHH
Confidence            77788888888889999999999999999999999999999999999984       88999999999999999  7799


Q ss_pred             HHHHHHHccCCc
Q 023284          233 RYLRGLYKDDTE  244 (284)
Q Consensus       233 ~y~~~ll~~~~~  244 (284)
                      ..+..++...++
T Consensus       259 ~~l~~~~~~~g~  270 (287)
T 3qou_A          259 XTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCC
Confidence            988888887653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.53  E-value=8.1e-14  Score=114.68  Aligned_cols=167  Identities=5%  Similarity=-0.125  Sum_probs=136.6

Q ss_pred             CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHh
Q 023284           79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWS  158 (284)
Q Consensus        79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~  158 (284)
                      ||.....+..++..+...| ++++++..+++++..+|++..+|...+.++...|+  +++++..++++++.+| +...+.
T Consensus         2 ~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--~~~A~~~~~~a~~~~p-~~~~~~   77 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQG-EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--FELAQELLATIPLEYQ-DNSYKS   77 (176)
T ss_dssp             ----CTTHHHHHHHHHHTT-CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--HHHHHHHHTTCCGGGC-CHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHhhhccC-ChHHHH
Confidence            5666677888899999988 69999999999999999999999999999999999  9999999999999999 776665


Q ss_pred             HHHHHH-HHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC--ccHHHHH
Q 023284          159 YRQWVL-QALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN--ESPWRYL  235 (284)
Q Consensus       159 ~r~~vl-~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n--esaW~y~  235 (284)
                      ..+.+. ...+...+++..++++++.+|++..++..++.++...|++       ++++..+.++++.+|+.  ..+|..+
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-------~~A~~~~~~~l~~~p~~~~~~a~~~l  150 (176)
T 2r5s_A           78 LIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD-------EEALELLWNILKVNLGAQDGEVKKTF  150 (176)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred             HHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-------HHHHHHHHHHHHhCcccChHHHHHHH
Confidence            555442 2223445689999999999999999999999999999984       88999999999999986  4488888


Q ss_pred             HHHHccCCccCCCChhhHHHHHhhh
Q 023284          236 RGLYKDDTESWINDPRMLLSVFESF  260 (284)
Q Consensus       236 ~~ll~~~~~~~~~~~~~~~~~~~~~  260 (284)
                      +.++...++    ..+++.++-++|
T Consensus       151 ~~~~~~~g~----~~~A~~~y~~al  171 (176)
T 2r5s_A          151 MDILSALGQ----GNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHCS----SCHHHHHHHHHH
T ss_pred             HHHHHHhCC----CCcHHHHHHHHH
Confidence            877776643    345555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=3.9e-12  Score=110.85  Aligned_cols=197  Identities=8%  Similarity=-0.008  Sum_probs=168.6

Q ss_pred             hhHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hhhCHHHHHHHHHHHHHhCCCC
Q 023284           46 PEFSETMSYFRAVYYS----DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET----LHTDLQDELAFVGRIAKSNSKN  117 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~----~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~----l~~~~~~eL~~~~~~l~~~pkn  117 (284)
                      |+...++...+.++..    .+..++|+.++.+++.++  +..+++..+.++..    .+ ++++++.++++++..+  +
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~  109 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLK--Y  109 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--C
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCccc-CHHHHHHHHHHHHHcC--C
Confidence            5667788888888887    777799999999999986  89999999999998    77 6999999999999884  8


Q ss_pred             hHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChH
Q 023284          118 YQLWHHRRWVAEK----LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       118 ~~aW~hR~~ll~~----l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      ..++...+.++..    .++  +++++.++.++++.+  +..++.+.+.++..    .+++++|+.+++++++.  .+..
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~  183 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRD--FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSP  183 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCC--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             ccHHHHHHHHHHcCCCcccC--HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            9999999999999    888  999999999999987  78899999999998    89999999999999987  4678


Q ss_pred             HHHHHHHHHhc----CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          190 AWNQRYFVVTR----SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       190 AW~~r~~ll~~----l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      ++...+.++..    .+.       ++++++++.++++..|  ..++..+..++........+...++..+.++++-
T Consensus       184 a~~~lg~~~~~g~~~~~~-------~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          184 GCFNAGNMYHHGEGATKN-------FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcc-------HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            99999999887    555       4789999999999876  6677777777776433345667788888777654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=120.84  Aligned_cols=169  Identities=14%  Similarity=0.085  Sum_probs=151.3

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh---
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS---  113 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~---  113 (284)
                      +|+...++...+.++...+..++|+.++.+++.+        +|....++...+.++...| ++++++.++++++..   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKDAANLLNDALAIREK  101 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence            4678889999999998888889999999999995        7888999999999999999 699999999999987   


Q ss_pred             -----CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------cCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284          114 -----NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD--------AKNYHAWSYRQWVLQALGGWEDELDYCQML  180 (284)
Q Consensus       114 -----~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d--------pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~  180 (284)
                           +|....++...+.++...|+  +++++.++.+++++.        |....++...+.++...|++++|+++++++
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGK--YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 57778899999999999999  999999999999884        778899999999999999999999999999


Q ss_pred             Hhc--------cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHh
Q 023284          181 LGE--------DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAIL  223 (284)
Q Consensus       181 l~~--------dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~  223 (284)
                      ++.        +|....++...+.++...+++       ++++.++.+++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~  223 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF-------KQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH
Confidence            998        788888999999999888885       566666666665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.52  E-value=4.8e-13  Score=128.46  Aligned_cols=182  Identities=8%  Similarity=-0.016  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hhhCHH-------HHHHHHHHHHH-hCCCChHHHHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIET-------LHTDLQ-------DELAFVGRIAK-SNSKNYQLWHHRRWVAEK  130 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~-------l~~~~~-------~eL~~~~~~l~-~~pkn~~aW~hR~~ll~~  130 (284)
                      .+++.+++++|..+|.+..+|...+.++..       .| +++       +++..+++++. .+|++..+|...+.++..
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc-chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            488999999999999999999999999886       56 455       89999999997 899999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhCcCCh-hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH-hcCCCCchhh
Q 023284          131 LGTGAVNKELQFTKKMLSLDAKNY-HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV-TRSPLLGGLI  208 (284)
Q Consensus       131 l~~~~~~eel~~~~~aL~~dpkN~-~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll-~~l~~~~~~~  208 (284)
                      .|+  ++++...++++++++|.+. .+|...+.++.+.|++++|++.+.++++..|.+...+...+.+. ...++     
T Consensus       334 ~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~-----  406 (530)
T 2ooe_A          334 RMK--YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-----  406 (530)
T ss_dssp             TTC--HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC-----
T ss_pred             cCC--HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC-----
Confidence            999  9999999999999999996 69999999999999999999999999999998877776555542 24555     


Q ss_pred             hhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          209 AMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       209 ~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                        .+++...++++|+.+|++..+|.....++...+    +..++...+-+++.
T Consensus       407 --~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g----~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          407 --KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN----EDNNTRVLFERVLT  453 (530)
T ss_dssp             --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT----CHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC----CHhhHHHHHHHHHh
Confidence              377899999999999999999987776665543    34566666666665

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.52  E-value=1.6e-13  Score=112.18  Aligned_cols=127  Identities=13%  Similarity=0.111  Sum_probs=117.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHhCCCCH--HHH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV-AEKLGTGAV--NKE  139 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l-l~~l~~~~~--~ee  139 (284)
                      +..++|+..+.+++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|...+.+ +...|+  +  +++
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~--~~~~~A  100 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN-DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ--HMTAQT  100 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--CCCHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC--cchHHH
Confidence            34468999999999999999999999999999999 69999999999999999999999999999 678888  7  999


Q ss_pred             HHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          140 LQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      +.+++++++++|.+..+|...+.++...|++++|+.++.++++.+|.+.....
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence            99999999999999999999999999999999999999999999999976553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.52  E-value=1.2e-12  Score=99.45  Aligned_cols=135  Identities=16%  Similarity=0.303  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE  129 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~  129 (284)
                      .++...+.++...+..++|+..+.+++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|...+.++.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            345556666666677799999999999999999999999999999888 6999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                      ..|+  +++++..++++++.+|.+..+|...+.++...|++++|+.++.+++..+|.+
T Consensus        81 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           81 KQGD--YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhcC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9998  9999999999999999999999999999999999999999999999999864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.51  E-value=2e-12  Score=98.20  Aligned_cols=135  Identities=16%  Similarity=0.274  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284           84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV  163 (284)
Q Consensus        84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v  163 (284)
                      .+|+..+.++...| ++++++..+++++..+|.+..+|...+.++...|+  +++++..++++++.+|.+..+|...+.+
T Consensus         2 ~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~   78 (136)
T 2fo7_A            2 EAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPRSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcC-cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--HHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            57888899998888 69999999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284          164 LQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN  228 (284)
Q Consensus       164 l~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n  228 (284)
                      +...|++++|+..+++++..+|.+..+|...+.++...+++       ++++.++.+++..+|++
T Consensus        79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-------DEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-------HHHHHHHHHHHHHSTTC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH-------HHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999999999888874       77899999999999874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.50  E-value=5.9e-13  Score=105.79  Aligned_cols=124  Identities=10%  Similarity=-0.069  Sum_probs=113.7

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      .+..+|+...++...+..+...+..++|+..+.+++.++|.+..+|..++.++..+| ++++++.++++++..+|.+..+
T Consensus        10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A           10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG-LYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCcHH
Confidence            467889999999999988888888899999999999999999999999999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL  167 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l  167 (284)
                      |.+++.++..+|+  +++++.+++++++++|.+...+..+..+...+
T Consensus        89 ~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A           89 PFHAAECHLQLGD--LDGAESGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            9999999999999  99999999999999999987776655554433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.50  E-value=3.7e-13  Score=123.00  Aligned_cols=139  Identities=12%  Similarity=-0.004  Sum_probs=128.9

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhCHHHHHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---------------YTVWHFRRQIIETLHTDLQDELAF  106 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---------------~~aW~~R~~~L~~l~~~~~~eL~~  106 (284)
                      +..+|+...++..++.++...+..++|+.++.++|.++|.+               ..+|+.++.++..+| ++++++.+
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~  218 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ-AFSAAIES  218 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            45688899999999999999999999999999999999999               699999999999999 69999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHH-HHHHHHHHhc
Q 023284          107 VGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDE-LDYCQMLLGE  183 (284)
Q Consensus       107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ee-L~~~~~~l~~  183 (284)
                      +++++.++|.+..+|+.++.++..+|+  +++|+.+++++++++|.|..+|..++.++..+++++++ ...+.+++..
T Consensus       219 ~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          219 CNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999  99999999999999999999999999999999998877 5566666643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=9.6e-13  Score=101.67  Aligned_cols=119  Identities=9%  Similarity=0.035  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR  125 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~  125 (284)
                      |....++...+..+...+..++|+..++++|.++|.+..+|..++.++..+| ++++++..+++++.++|.+..+|..++
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKA   79 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            4556778888888888888899999999999999999999999999999999 699999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhC------cCChhHHhHHHHHHHHc
Q 023284          126 WVAEKLGTGAVNKELQFTKKMLSLD------AKNYHAWSYRQWVLQAL  167 (284)
Q Consensus       126 ~ll~~l~~~~~~eel~~~~~aL~~d------pkN~~AW~~r~~vl~~l  167 (284)
                      .++..+|+  +++++.++.++++++      |.|..++.....+...+
T Consensus        80 ~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           80 TAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999  999999999999999      99999988887776554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=7.5e-13  Score=100.64  Aligned_cols=123  Identities=14%  Similarity=0.128  Sum_probs=92.4

Q ss_pred             hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284           78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus        78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      .+|.+..+|...+.+....| ++++++.++++++..+|.+..+|..++.++...|+  +++++.++.++++.+|.+..+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--YAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchhhhHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--hHHHHHHHHHHHhcCccCHHHH
Confidence            45566677777777777777 57777777777777777777777777777777777  7777777777777777777777


Q ss_pred             hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284          158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~  203 (284)
                      ..++.++...|++++|+.+++++++.+|.+..+|...+.+...+++
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            7777777777777777777777777777777777777776655544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.49  E-value=6.8e-13  Score=108.44  Aligned_cols=130  Identities=10%  Similarity=-0.019  Sum_probs=119.7

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH-HHHccCc--HHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGW--EDELD  175 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v-l~~l~~~--~eeL~  175 (284)
                      ++++++..+++++..+|.+..+|...+.++...|+  +++++.++.++++++|.+..+|...+.+ +...|++  ++|+.
T Consensus        25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~  102 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA  102 (177)
T ss_dssp             --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            47789999999999999999999999999999999  9999999999999999999999999999 7789998  99999


Q ss_pred             HHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284          176 YCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG  237 (284)
Q Consensus       176 ~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~  237 (284)
                      +++++++.+|.+..+|..++.++...+++       ++++.++.+++.++|++.........
T Consensus       103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A          103 MIDKALALDSNEITALMLLASDAFMQANY-------AQAIELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcccH-------HHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            99999999999999999999999999884       78999999999999999887654443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.48  E-value=1.3e-12  Score=105.85  Aligned_cols=118  Identities=9%  Similarity=0.020  Sum_probs=110.8

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      -++....++...+.++...+..++|+.+++++|.++|.+..+|+.++.++..+| ++++++.++++++.++|++..+|+.
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG-QHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            356677888888888888888899999999999999999999999999999999 6999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284          124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL  164 (284)
Q Consensus       124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl  164 (284)
                      ++.++..+|+  +++++.++.++++++|.|..+|..++...
T Consensus        85 lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           85 LGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999  99999999999999999999999987654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.48  E-value=6.8e-13  Score=101.76  Aligned_cols=120  Identities=16%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      .|....++...+.++...+..++|+.++++++..+|.+..+|..++.++...+ ++++++.++++++..+|.+..+|...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL-EFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45555555555555555555555666666666666666555555555555555 35555555555555555555555555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL  167 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l  167 (284)
                      +.++..+|+  +++++.+++++++++|.+..+|...+.++...
T Consensus        91 a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           91 AAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            555555555  55555555555555555555555555554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.47  E-value=3.8e-13  Score=119.88  Aligned_cols=184  Identities=9%  Similarity=-0.062  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHh-hhCHHHHHHHHHHHHHhCCCC---
Q 023284           48 FSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKN---  117 (284)
Q Consensus        48 ~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l-~~~~~~eL~~~~~~l~~~pkn---  117 (284)
                      ...++...+.++...+..++|+.+++++|.+.|..      ..+++..+.++... | ++++++.++++++.+.|++   
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg-~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhCCCh
Confidence            35678888888888888999999999999998864      57899999999995 8 6999999999999998865   


Q ss_pred             ---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh-------HHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          118 ---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH-------AWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       118 ---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~-------AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                         ..++...|.++..+|+  +++++.+++++++++|.+..       +|...+.++..+|++++|+.+++++++++|++
T Consensus       155 ~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQ--YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence               5678999999999999  99999999999999998764       57888999999999999999999999999998


Q ss_pred             hHHHHHHHH-----HHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284          188 NSAWNQRYF-----VVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY  239 (284)
Q Consensus       188 ~sAW~~r~~-----ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll  239 (284)
                      ..+...+..     .+. .+..+    -+++++..+++++.++|.+...+.-++..+
T Consensus       233 ~~~~~~~~l~~l~~~~~-~~~~~----~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          233 ADSRESNFLKSLIDAVN-EGDSE----QLSEHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             -----HHHHHHHHHHHH-TTCTT----THHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHH-cCCHH----HHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            876544322     111 11111    257889999999999887765554444333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.47  E-value=4.2e-12  Score=108.56  Aligned_cols=165  Identities=7%  Similarity=-0.086  Sum_probs=136.8

Q ss_pred             cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh---
Q 023284           82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH---  155 (284)
Q Consensus        82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~---  155 (284)
                      ...+++.++..+...| ++++++..+++++..+|.+.   .++..++.++...|+  +++++..++++++.+|++..   
T Consensus         3 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~P~~~~~~~   79 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDG-NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--LPLAQAAIDRFIRLNPTHPNIDY   79 (225)
T ss_dssp             CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCCcHHH
Confidence            4678899999999989 69999999999999999874   799999999999999  99999999999999999986   


Q ss_pred             HHhHHHHHHHH------------------ccCcHHHHHHHHHHHhccCCChHHHHH-----------------HHHHHhc
Q 023284          156 AWSYRQWVLQA------------------LGGWEDELDYCQMLLGEDIFNNSAWNQ-----------------RYFVVTR  200 (284)
Q Consensus       156 AW~~r~~vl~~------------------l~~~~eeL~~~~~~l~~dp~n~sAW~~-----------------r~~ll~~  200 (284)
                      +++.+|.++..                  .|++++|+..++++|+.+|++..++.-                 ++.++..
T Consensus        80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~  159 (225)
T 2yhc_A           80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE  159 (225)
T ss_dssp             HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999998876                  457899999999999999999988743                 3334444


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284          201 SPLLGGLIAMRDSEVNFTIEAILGNPENE---SPWRYLRGLYKDDTESWINDPRMLLSVFESF  260 (284)
Q Consensus       201 l~~~~~~~~~~~~el~~~~~~i~~~P~ne---saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  260 (284)
                      .++       +++++..++++|+.+|+++   .++..++.++...++    ..+++..+...+
T Consensus       160 ~~~-------~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~----~~~A~~~~~~l~  211 (225)
T 2yhc_A          160 RGA-------WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM----NAQAEKVAKIIA  211 (225)
T ss_dssp             HTC-------HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHH
T ss_pred             cCc-------HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC----cHHHHHHHHHHH
Confidence            444       4789999999999999987   468777777777653    445555555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.47  E-value=3.2e-12  Score=106.84  Aligned_cols=135  Identities=6%  Similarity=-0.019  Sum_probs=122.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284           52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l  131 (284)
                      +...+.++...+..++|+..+.+++  +| +..+|+.++.++..+| ++++++..+++++..+|.+..+|..+|.++..+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILK-NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            4445666667778899999999996  44 7889999999999999 699999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCcCCh----------------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          132 GTGAVNKELQFTKKMLSLDAKNY----------------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpkN~----------------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      |+  +++++..+++++++.|.+.                .+|++++.++..+|++++|+++++++++++|.+..+..
T Consensus        85 ~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  159 (213)
T 1hh8_A           85 EK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI  159 (213)
T ss_dssp             TC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred             cc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchH
Confidence            99  9999999999999988887                99999999999999999999999999999998865443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.46  E-value=1.2e-12  Score=112.48  Aligned_cols=136  Identities=10%  Similarity=0.168  Sum_probs=127.0

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh---
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS---  113 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~---  113 (284)
                      +|....++...+.++...+..++|+.++.+++.+        .|....++...+.++...| ++++++.++.+++..   
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence            4778889999999999999999999999999988        4778899999999999999 699999999999998   


Q ss_pred             -----CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284          114 -----NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQWVLQALGGWEDELDYCQML  180 (284)
Q Consensus       114 -----~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~  180 (284)
                           +|....++...+.++..+|+  +++++.++.+++++        +|.+..++...+.++...|++++|+.+++++
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 68889999999999999999  99999999999999        8999999999999999999999999999999


Q ss_pred             Hhc
Q 023284          181 LGE  183 (284)
Q Consensus       181 l~~  183 (284)
                      +++
T Consensus       196 l~~  198 (283)
T 3edt_B          196 LTR  198 (283)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.46  E-value=2.5e-12  Score=99.99  Aligned_cols=118  Identities=10%  Similarity=0.048  Sum_probs=105.7

Q ss_pred             HhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284           77 CLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA  156 (284)
Q Consensus        77 ~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~A  156 (284)
                      ..+|.+..+|...+.++...| ++++++.++.+++..+|.+..+|..++.++..+|+  +++++..+.++++++|.+..+
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~   79 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELDGQSVKA   79 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCccccHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCchhHHH
Confidence            467889999999999999999 69999999999999999999999999999999999  999999999999999999999


Q ss_pred             HhHHHHHHHHccCcHHHHHHHHHHHhccCC-----ChHHHHHHHHH
Q 023284          157 WSYRQWVLQALGGWEDELDYCQMLLGEDIF-----NNSAWNQRYFV  197 (284)
Q Consensus       157 W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~-----n~sAW~~r~~l  197 (284)
                      |..++.++..+|++++|+.++.++++++|.     +..++.....+
T Consensus        80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~  125 (137)
T 3q49_B           80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  125 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998     55555444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.45  E-value=5.7e-12  Score=100.41  Aligned_cols=132  Identities=14%  Similarity=0.085  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA  128 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll  128 (284)
                      ..++...+.+....+..++|+..+.+++.++|.+..+|..++.++..+| ++++++.++++++..+|.+..+|...+.++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3445555555556666677777777777777777777777777777777 477777777777777777777777777777


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH--HHHccCcHHHHHHHHHHHhc
Q 023284          129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV--LQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v--l~~l~~~~eeL~~~~~~l~~  183 (284)
                      ..+|+  +++++.++.++++++|.+..+|.+.+.+  +...|++++|++.+.+....
T Consensus        92 ~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           92 MALGK--FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            77777  7777777777777777777777554444  55556677777766665443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.45  E-value=5.2e-12  Score=95.89  Aligned_cols=126  Identities=16%  Similarity=0.061  Sum_probs=117.1

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +..+|....++...+.+....+..++|+..+.+++..+|.+..+|..++.++...| ++++++.++++++..+|.+..+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-NYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-chHHHHHHHHHHHhcCccCHHHH
Confidence            45577888888888888888888899999999999999999999999999999999 69999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW  170 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~  170 (284)
                      ...+.++..+|+  +++++.++.++++++|.+..+|...+.++..+|++
T Consensus        84 ~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           84 GRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999  99999999999999999999999999999888765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.45  E-value=1.5e-12  Score=119.25  Aligned_cols=203  Identities=8%  Similarity=-0.066  Sum_probs=168.7

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHh------CC
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY----TVWHFRRQIIETLHTDLQDELAFVGRIAKS------NS  115 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------~p  115 (284)
                      +.....+...+..+...+..++|+.++++++.++|++.    .+|..++.++..+| ++++++.++++++..      +|
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG-DYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccCch
Confidence            45556666677777778888999999999999999987    58999999999999 699999999999998      78


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------CcCChhHHhHHHHHHHHccC-----------------cHH
Q 023284          116 KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL------DAKNYHAWSYRQWVLQALGG-----------------WED  172 (284)
Q Consensus       116 kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~------dpkN~~AW~~r~~vl~~l~~-----------------~~e  172 (284)
                      ....++...+.++..+|+  +++++.++.+++++      ++....++...+.++...|+                 +++
T Consensus       124 ~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~  201 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR  201 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence            889999999999999999  99999999999998      77778899999999999999                 999


Q ss_pred             HHHHHHHHHhcc------CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHHHHHHHc
Q 023284          173 ELDYCQMLLGED------IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRYLRGLYK  240 (284)
Q Consensus       173 eL~~~~~~l~~d------p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y~~~ll~  240 (284)
                      |++++.+++++.      +....++..++.++...+++       ++++.++.+++.+.|.+..      ++..+..++.
T Consensus       202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  274 (411)
T 4a1s_A          202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF-------QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI  274 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            999999998874      34446888899998888874       7788888888888776655      6666666665


Q ss_pred             cCCccCCCChhhHHHHHhhhhc
Q 023284          241 DDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      ..+    +..+++..+.++++-
T Consensus       275 ~~g----~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          275 FLG----QFEDAAEHYKRTLAL  292 (411)
T ss_dssp             TTT----CHHHHHHHHHHHHHH
T ss_pred             HCc----CHHHHHHHHHHHHHH
Confidence            553    345666666555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=9.3e-13  Score=115.10  Aligned_cols=173  Identities=8%  Similarity=0.102  Sum_probs=151.3

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC--
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN--  114 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~--  114 (284)
                      .|....++...+.++...+..++|+.++.+++.+        .|....++...+.++..+| ++++++.++++++...  
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHH
Confidence            5677778888888888888889999999999988        5778899999999999999 6999999999999874  


Q ss_pred             ------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284          115 ------SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQWVLQALGGWEDELDYCQML  180 (284)
Q Consensus       115 ------pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~  180 (284)
                            |....++...+.++...|+  +++++.++++++++        +|....++...+.++...|++++|+++++++
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                  7778899999999999999  99999999999998        8888999999999999999999999999999


Q ss_pred             Hhc-------------------------------------------------cCCChHHHHHHHHHHhcCCCCchhhhhH
Q 023284          181 LGE-------------------------------------------------DIFNNSAWNQRYFVVTRSPLLGGLIAMR  211 (284)
Q Consensus       181 l~~-------------------------------------------------dp~n~sAW~~r~~ll~~l~~~~~~~~~~  211 (284)
                      ++.                                                 +|.+..+|...+.++...|+       +
T Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~  294 (311)
T 3nf1_A          222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK-------F  294 (311)
T ss_dssp             HHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-------H
T ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-------H
Confidence            985                                                 45566777777777777776       4


Q ss_pred             HHHHHHHHHHHhcCCC
Q 023284          212 DSEVNFTIEAILGNPE  227 (284)
Q Consensus       212 ~~el~~~~~~i~~~P~  227 (284)
                      ++++.++.+++++.|+
T Consensus       295 ~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          295 EAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            7889999999988775

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.44  E-value=2.3e-12  Score=107.75  Aligned_cols=136  Identities=8%  Similarity=-0.022  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHH
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW  162 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~  162 (284)
                      ...++.++.++...| ++++++..+++++  +| +..+|..++.++...|+  +++++..++++++++|.+..+|+.+|.
T Consensus         6 ~~~~~~~g~~~~~~~-~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            6 AISLWNEGVLAADKK-DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--MTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            345678888888888 6999999999996  44 88999999999999999  999999999999999999999999999


Q ss_pred             HHHHccCcHHHHHHHHHHHhccCCCh----------------HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284          163 VLQALGGWEDELDYCQMLLGEDIFNN----------------SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP  226 (284)
Q Consensus       163 vl~~l~~~~eeL~~~~~~l~~dp~n~----------------sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P  226 (284)
                      ++..+|++++|+++++++++..|.+.                .+|.++|.++..++++       +++++++.+++.++|
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW-------KKAEEQLALATSMKS  152 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHTTCC
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH-------HHHHHHHHHHHHcCc
Confidence            99999999999999999999998887                9999999999999884       789999999999999


Q ss_pred             CCccH
Q 023284          227 ENESP  231 (284)
Q Consensus       227 ~nesa  231 (284)
                      ++...
T Consensus       153 ~~~~~  157 (213)
T 1hh8_A          153 EPRHS  157 (213)
T ss_dssp             SGGGG
T ss_pred             ccccc
Confidence            87654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.44  E-value=5.5e-12  Score=100.50  Aligned_cols=131  Identities=11%  Similarity=0.063  Sum_probs=115.4

Q ss_pred             cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284           82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ  161 (284)
Q Consensus        82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~  161 (284)
                      ...+|..++.+....| ++++++..+++++..+|.+..+|..++.++..+|+  +++++.++.++++++|.+..+|..++
T Consensus        12 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A           12 RAEELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--YGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4577888999999888 69999999999999999999999999999999999  99999999999999999999999999


Q ss_pred             HHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH--HhcCCCCchhhhhHHHHHHHHHHHH
Q 023284          162 WVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV--VTRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       162 ~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l--l~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      .++..+|++++|+.+++++++.+|.+..++.+.+.+  +...+.       ++++++.+.++.
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~~  144 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-------FERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHcccchH
Confidence            999999999999999999999999999999766554  333333       356666665544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.44  E-value=6.5e-12  Score=96.20  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=115.2

Q ss_pred             hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284           78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus        78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      ..|.+..+|+.++.++...| ++++++.++++++..+|++..+|..++.++...|+  +++++.+++++++.+|.+..+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~   87 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKG-DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--FQLALKDCEECIQLEPTFIKGY   87 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTT-CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCchHHH
Confidence            35788999999999999999 69999999999999999999999999999999999  9999999999999999999999


Q ss_pred             hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      ..++.++..+|++++|+.+++++++.+|.+..++...+.++...+
T Consensus        88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999988876543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=1.1e-11  Score=92.43  Aligned_cols=114  Identities=15%  Similarity=0.084  Sum_probs=101.7

Q ss_pred             cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284           82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ  161 (284)
Q Consensus        82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~  161 (284)
                      ...+|+.++.++...| ++++++.++++++..+|.+..+|...+.++...|+  +++++..+.++++.+|.+..+|...+
T Consensus         3 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a   79 (118)
T 1elw_A            3 QVNELKEKGNKALSVG-NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--YQKAYEDGCKTVDLKPDWGKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4567888888888888 68999999999999999999999999999999988  99999999999999999999999999


Q ss_pred             HHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          162 WVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       162 ~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      .++..+|++++|++++.++++.+|.+..+|...+.+.
T Consensus        80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999998888776654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.42  E-value=1.1e-12  Score=112.53  Aligned_cols=162  Identities=12%  Similarity=0.081  Sum_probs=136.8

Q ss_pred             CHHHHHHHHHHHH-------hC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Q 023284           65 SSRSFQLTKEAIC-------LN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--------NSKNYQLWHHRRWVA  128 (284)
Q Consensus        65 s~~aL~~~~~~L~-------ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--------~pkn~~aW~hR~~ll  128 (284)
                      .++|+.++++++.       .+ |....+|...+.++...| ++++++.++++++..        +|....++...+.++
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~   95 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY   95 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            3455555555555       23 788899999999999999 699999999999987        577888999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc--------cCCChHHHH
Q 023284          129 EKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE--------DIFNNSAWN  192 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~--------dp~n~sAW~  192 (284)
                      ...|+  +++++.++.+++++        +|....++...+.++..+|++++|+++++++++.        +|.+..++.
T Consensus        96 ~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           96 GKRGK--YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHhcc--HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            99999  99999999999998        6888999999999999999999999999999999        888889999


Q ss_pred             HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc---------CCCCccHHHHHH
Q 023284          193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG---------NPENESPWRYLR  236 (284)
Q Consensus       193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~---------~P~nesaW~y~~  236 (284)
                      ..+.++...+++       ++++.++.+++.+         +|.....|....
T Consensus       174 ~la~~~~~~g~~-------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  219 (283)
T 3edt_B          174 NLASCYLKQGKY-------QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE  219 (283)
T ss_dssp             HHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHH
T ss_pred             HHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence            999999888885       6677777777765         455555654443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.42  E-value=2.1e-12  Score=100.58  Aligned_cols=101  Identities=8%  Similarity=-0.049  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284           85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL  164 (284)
Q Consensus        85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl  164 (284)
                      .|+.++.++...| ++++++..+++++..+|++..+|..+|.++..+|+  +++++.+++++++++|.+..+|..++.++
T Consensus        19 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLA-NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--DGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4666777777777 47777777777777777777777777777777777  77778888888888888777887777777


Q ss_pred             HHccCcHHHHHHHHHHHhccCCCh
Q 023284          165 QALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       165 ~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      ...|++++|+..++++++++|.+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC------
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCCC
Confidence            777777788888888887777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.41  E-value=2.8e-12  Score=103.68  Aligned_cols=116  Identities=12%  Similarity=0.084  Sum_probs=99.2

Q ss_pred             cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023284           82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKS------------------NSKNYQLWHHRRWVAEKLGTGAVNKELQFT  143 (284)
Q Consensus        82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------------------~pkn~~aW~hR~~ll~~l~~~~~~eel~~~  143 (284)
                      ...++..+|..+...| ++++++.+|.+++..                  +|.+..+|.+++.++..+|+  +++++..+
T Consensus        10 ~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--~~~A~~~~   86 (162)
T 3rkv_A           10 SVEALRQKGNELFVQK-DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--LHEAEETS   86 (162)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHH
Confidence            3566777788887777 588888888888887                  78888999999999999999  99999999


Q ss_pred             HHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh-HHHHHHHHHHhc
Q 023284          144 KKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN-SAWNQRYFVVTR  200 (284)
Q Consensus       144 ~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~-sAW~~r~~ll~~  200 (284)
                      +++|+++|.+..+|+.+|.++..+|++++|+.++.++++++|+|. .+....+.+...
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 556555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.41  E-value=1.3e-12  Score=116.24  Aligned_cols=109  Identities=9%  Similarity=0.053  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR  125 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~  125 (284)
                      |....++...+..+...+..++|+..++++|.++|.+..+|+.++.++..+| ++++++..+++++..+|.+..+|+.+|
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-QPEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3455677777777777788889999999999999999999999999998888 588999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284          126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus       126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      .++..+|+  +++++..+.++++++|.+....
T Consensus        80 ~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~  109 (281)
T 2c2l_A           80 QCQLEMES--YDEAIANLQRAYSLAKEQRLNF  109 (281)
T ss_dssp             HHHHHTTC--HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHcCC--HHHHHHHHHHHHHhCccchhhH
Confidence            99999988  9999999999999988774433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.40  E-value=3e-12  Score=116.07  Aligned_cols=199  Identities=10%  Similarity=-0.003  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh------CCCCh
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKS------NSKNY  118 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------~pkn~  118 (284)
                      ..++...+.++...+..++|+.++++++.++|.+    ..+|..++.+....| ++++++.++++++..      .|...
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccHHHH
Confidence            3456667777777888899999999999999998    468899999999999 699999999999887      56667


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccC--------------------cHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGG--------------------WED  172 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~--------------------~~e  172 (284)
                      .++...+.++..+|+  +++++.++.+++++.|+..      .++...+.++...|+                    +++
T Consensus        88 ~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           88 KASGNLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            899999999999999  9999999999999988764      489999999999999                    999


Q ss_pred             HHHHHHHHHhc------cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHHHHHHHc
Q 023284          173 ELDYCQMLLGE------DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRYLRGLYK  240 (284)
Q Consensus       173 eL~~~~~~l~~------dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y~~~ll~  240 (284)
                      |++++.+++.+      .|....++...+.++...+++       ++++.++.+++.+.|....      ++..++.++.
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  238 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI  238 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            99999999987      555567888889888888874       7788888888887776665      6666666665


Q ss_pred             cCCccCCCChhhHHHHHhhhh
Q 023284          241 DDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      ..+    ++.+++..+.+++.
T Consensus       239 ~~g----~~~~A~~~~~~al~  255 (406)
T 3sf4_A          239 FLG----EFETASEYYKKTLL  255 (406)
T ss_dssp             HTT----CHHHHHHHHHHHHH
T ss_pred             HcC----ChHHHHHHHHHHHH
Confidence            543    34566666665544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.40  E-value=4e-12  Score=98.76  Aligned_cols=120  Identities=13%  Similarity=-0.093  Sum_probs=108.5

Q ss_pred             HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284          112 KSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW  191 (284)
Q Consensus       112 ~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW  191 (284)
                      ..+|.+..+|...+.++...|+  +++++.++.++++++|.+..+|+.++.++..+|++++|+.++.++++++|.+..+|
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRK--YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCc--HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH
Confidence            4578999999999999999999  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC-----CccHHHHHHHHHc
Q 023284          192 NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE-----NESPWRYLRGLYK  240 (284)
Q Consensus       192 ~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~-----nesaW~y~~~ll~  240 (284)
                      ..+|.++..++.+       ++++.++.+++.++|+     +..++..+..+..
T Consensus        81 ~~l~~~~~~~~~~-------~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           81 FFLGQCQLEMESY-------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhH-------HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            9999999999884       7889999999999998     6667766655443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.40  E-value=2.7e-12  Score=122.19  Aligned_cols=131  Identities=9%  Similarity=-0.012  Sum_probs=119.1

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhCHHHHHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---------------YTVWHFRRQIIETLHTDLQDELAF  106 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---------------~~aW~~R~~~L~~l~~~~~~eL~~  106 (284)
                      +..+|+...++..++..+.+.+..++|+..+.++|.++|.+               ..+|++++.++..++ ++++|+.+
T Consensus       261 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~  339 (457)
T 1kt0_A          261 TKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR-EYTKAVEC  339 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence            35678888999999999999999999999999999999999               799999999999999 69999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHH
Q 023284          107 VGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELD  175 (284)
Q Consensus       107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~  175 (284)
                      ++++|.++|++..+|+.++.++..+|+  +++|+.+++++++++|.|..+|..++.++..+++++++..
T Consensus       340 ~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          340 CDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999  9999999999999999999999999999999998876653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-11  Score=96.36  Aligned_cols=116  Identities=13%  Similarity=0.074  Sum_probs=61.8

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY  118 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~  118 (284)
                      +..+|....++...+......+..++|+.++++++.++|++   ..+|..++.++..++ ++++++.++++++..+|++.
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-DYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCH
T ss_pred             CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCccCH
Confidence            34445555555555555555555555555555555555555   555555555555555 35555555555555555555


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR  160 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r  160 (284)
                      .+|..++.++..+|+  +++++.++.++++++|.+..+|...
T Consensus       100 ~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l  139 (148)
T 2dba_A          100 KALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEAL  139 (148)
T ss_dssp             HHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            555555555555555  5555555555555555555544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.39  E-value=2.4e-12  Score=95.45  Aligned_cols=108  Identities=7%  Similarity=0.079  Sum_probs=101.8

Q ss_pred             hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--Chh
Q 023284           78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK--NYH  155 (284)
Q Consensus        78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk--N~~  155 (284)
                      ++|.+..+|..++.++...| ++++++.++++++..+|.+..+|..++.++...|+  +++++.+++++++++|.  +..
T Consensus         1 l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~   77 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAG-NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--YEEAVDCYNYVINVIEDEYNKD   77 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSCCTTCHH
T ss_pred             CCCCcHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCcccchHH
Confidence            47899999999999999888 69999999999999999999999999999999999  99999999999999999  999


Q ss_pred             HHhHHHHHHHHc-cCcHHHHHHHHHHHhccCCCh
Q 023284          156 AWSYRQWVLQAL-GGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       156 AW~~r~~vl~~l-~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      +|..++.++..+ |++++|++++.+++..+|.+.
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            999999999999 999999999999999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.39  E-value=2.2e-11  Score=91.62  Aligned_cols=119  Identities=19%  Similarity=0.292  Sum_probs=101.3

Q ss_pred             hCCCc-HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284           78 LNPGN-YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA  156 (284)
Q Consensus        78 lnP~~-~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~A  156 (284)
                      .+|.. ..+|+..+.++...| ++++++.++++++..+|.+..+|...+.++...|+  +++++.+++++++.+|.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCccHHH
Confidence            35555 678888888888888 58899999999999999999999999999888888  999999999999999999999


Q ss_pred             HhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284          157 WSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       157 W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~  199 (284)
                      |...+.++...|++++|+.+++++++.+|.+..++..++.+..
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888888777654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.39  E-value=3.4e-12  Score=100.09  Aligned_cols=104  Identities=11%  Similarity=0.021  Sum_probs=91.9

Q ss_pred             CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------
Q 023284           81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------  154 (284)
Q Consensus        81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------  154 (284)
                      +...++...|.++...| ++++|+.+|+++|.++|++..+|+++|.++..+|+  +++++.+++++|+++|++.      
T Consensus         6 d~A~a~~~lG~~~~~~~-~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQK-DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK--FAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh--HHHHHHHHHHHHHhCcccchhhHHH
Confidence            45567888899998888 69999999999999999999999999999999999  9999999999999998875      


Q ss_pred             -hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          155 -HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       155 -~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                       .++..+|.++..++++++|++++.++|+.+|..
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence             367778888888999999999999999988853

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.37  E-value=2.7e-12  Score=103.72  Aligned_cols=117  Identities=11%  Similarity=0.028  Sum_probs=106.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------------CcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL------------------DAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~------------------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      ...+|..+|..+...|+  +++++.+|.+++++                  +|.+..+|++++.++..+|++++|+.+++
T Consensus        10 ~a~~~~~~G~~~~~~~~--~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKD--YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            45678889999999999  99999999999999                  89999999999999999999999999999


Q ss_pred             HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHccC
Q 023284          179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE-SPWRYLRGLYKDD  242 (284)
Q Consensus       179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne-saW~y~~~ll~~~  242 (284)
                      ++|+++|.+..+|+.+|.++..++++       ++++.++.+++.++|+|. .+...+..+....
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~-------~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKL-------DEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcH-------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999984       889999999999999998 6676666555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.37  E-value=3.2e-12  Score=105.19  Aligned_cols=102  Identities=11%  Similarity=0.008  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284           65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK  144 (284)
Q Consensus        65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~  144 (284)
                      .++|+..++++++++|++..+|+..|.++..+++ ++......                        +.  +++|+.+++
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~-~~~g~~al------------------------~~--~~eAi~~le   70 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQ-FHSISDAK------------------------QM--IQEAITKFE   70 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HSCHHHHH------------------------HH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcc-cchhhhhH------------------------hH--HHHHHHHHH
Confidence            3566666666666666666666666666666653 22000000                        00  345555555


Q ss_pred             HHHHhCcCChhHHhHHHHHHHHc-----------cCcHHHHHHHHHHHhccCCChHHHHH
Q 023284          145 KMLSLDAKNYHAWSYRQWVLQAL-----------GGWEDELDYCQMLLGEDIFNNSAWNQ  193 (284)
Q Consensus       145 ~aL~~dpkN~~AW~~r~~vl~~l-----------~~~~eeL~~~~~~l~~dp~n~sAW~~  193 (284)
                      ++|+++|++..+|+++|.++..+           +++++|+++++++|+++|+|...+..
T Consensus        71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a  130 (158)
T 1zu2_A           71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  130 (158)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            55555555555555555555554           47888888888888888887655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.37  E-value=1.5e-12  Score=108.78  Aligned_cols=134  Identities=9%  Similarity=-0.098  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY----------------QLWHHRRWVAE  129 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~----------------~aW~hR~~ll~  129 (284)
                      +++.+.++......++...+|..+|.++...| ++++++.++++++...|.+.                .+|..++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~   99 (198)
T 2fbn_A           21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKN-EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN   99 (198)
T ss_dssp             -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444445555666777777777777 57777777777777777776                78888888888


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      .+|+  +++++.+++++++++|.+..+|+.++.++..+|++++|+.++.++++++|.+..++...+.+...++
T Consensus       100 ~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          100 KNKD--YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhcC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            8888  8888888888888888888888888888888888888888888888888888888888877766554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.37  E-value=4.4e-13  Score=112.03  Aligned_cols=149  Identities=12%  Similarity=-0.066  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh-----------
Q 023284           86 WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY-----------  154 (284)
Q Consensus        86 W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~-----------  154 (284)
                      ..+-+..+..++ +++++.+.++......++....|..+|.++...|+  +++++.++.+++++.|.+.           
T Consensus         7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   83 (198)
T 2fbn_A            7 HHHHSSGRENLY-FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNE--INEAIVKYKEALDFFIHTEEWDDQILLDKK   83 (198)
T ss_dssp             ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred             ccchhhhhhhhh-hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence            334444555555 47777777777777778888899999999999999  9999999999999999998           


Q ss_pred             -----hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284          155 -----HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE  229 (284)
Q Consensus       155 -----~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne  229 (284)
                           .+|..++.++..+|++++|+.+++++++.+|.+..++..+|.++..++++       ++++.++.+++.++|++.
T Consensus        84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~p~~~  156 (198)
T 2fbn_A           84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-------EEAKENLYKAASLNPNNL  156 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-------HHHHHHHHHHHHHCCCcH
Confidence                 89999999999999999999999999999999999999999999998884       789999999999999999


Q ss_pred             cHHHHHHHHHccCCc
Q 023284          230 SPWRYLRGLYKDDTE  244 (284)
Q Consensus       230 saW~y~~~ll~~~~~  244 (284)
                      .++..+..+....++
T Consensus       157 ~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          157 DIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999888877765543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.37  E-value=7.8e-12  Score=114.56  Aligned_cols=179  Identities=8%  Similarity=0.008  Sum_probs=147.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------hHHH
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICL------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------YQLW  121 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~l------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------~~aW  121 (284)
                      .+.+....+..++|+..+.+++.+      .+....+++..|.+...+| ++++++.++.+++.+.++.       ..++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            455666777889999999999998      3346689999999999999 6999999999999985544       4588


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccCcHHHHHHHHHHHh-----cc-CCChH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGGWEDELDYCQMLLG-----ED-IFNNS  189 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~~~eeL~~~~~~l~-----~d-p~n~s  189 (284)
                      ...|.++..+|+  +++|+.++.+++++.+++.      .++++.|.++..+|++++|++++.++++     .+ |....
T Consensus       188 ~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          188 SLFATNFLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            899999999999  9999999999999877665      4899999999999999999999999999     57 88889


Q ss_pred             HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHccCC
Q 023284          190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN-----PENESPWRYLRGLYKDDT  243 (284)
Q Consensus       190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~-----P~nesaW~y~~~ll~~~~  243 (284)
                      ++...|.++..++++       ++++.++.+++.+.     |.....+..++.++...+
T Consensus       266 ~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~  317 (383)
T 3ulq_A          266 AYFLITQIHYKLGKI-------DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP  317 (383)
T ss_dssp             HHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence            999999999999885       67788888888764     333334444555555444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.36  E-value=6.8e-12  Score=113.73  Aligned_cols=204  Identities=9%  Similarity=-0.015  Sum_probs=164.4

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhC-------------------
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETLHTD-------------------   99 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l~~~-------------------   99 (284)
                      .|....++...+.++...+..++|+..+.+++.+.|+.      ..++...+.++...| +                   
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~  161 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRD  161 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHH
Confidence            45556677778888888888899999999999988765      558999999999888 5                   


Q ss_pred             -HHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHH
Q 023284          100 -LQDELAFVGRIAKS------NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQA  166 (284)
Q Consensus       100 -~~~eL~~~~~~l~~------~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~  166 (284)
                       +++++..+.+++..      .|....++...+.++...|+  +++++.++++++++.+++..      ++...+.++..
T Consensus       162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence             89999999999886      45556789999999999999  99999999999999887766      99999999999


Q ss_pred             ccCcHHHHHHHHHHHhccCCC------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc------cHHHH
Q 023284          167 LGGWEDELDYCQMLLGEDIFN------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE------SPWRY  234 (284)
Q Consensus       167 l~~~~eeL~~~~~~l~~dp~n------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne------saW~y  234 (284)
                      .|++++|+.++++++++.+..      ..++...+.++...+++       ++++.++.+++.+.+...      .++..
T Consensus       240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  312 (406)
T 3sf4_A          240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-------EKAIDYHLKHLAIAQELNDRIGEGRACWS  312 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            999999999999999998877      67888889888888874       778888888887766553      35555


Q ss_pred             HHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          235 LRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       235 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      ++.++...+    +..+++..+.++++-
T Consensus       313 la~~~~~~g----~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          313 LGNAYTALG----NHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHT----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC----CHHHHHHHHHHHHHH
Confidence            555555443    345666665555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.36  E-value=8.6e-12  Score=92.41  Aligned_cols=108  Identities=13%  Similarity=0.136  Sum_probs=102.8

Q ss_pred             hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC--ChHH
Q 023284          113 SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF--NNSA  190 (284)
Q Consensus       113 ~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~--n~sA  190 (284)
                      ++|.+..+|...+.++...|+  +++++.+++++++++|.+..+|..++.++...|++++|+.+++++++.+|.  +..+
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGN--YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence            378999999999999999999  999999999999999999999999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHhcC-CCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284          191 WNQRYFVVTRS-PLLGGLIAMRDSEVNFTIEAILGNPENE  229 (284)
Q Consensus       191 W~~r~~ll~~l-~~~~~~~~~~~~el~~~~~~i~~~P~ne  229 (284)
                      |..++.++..+ +++       +++++++.+++...|++.
T Consensus        79 ~~~l~~~~~~~~~~~-------~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           79 WAAKADALRYIEGKE-------VEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHTTCSSCS-------HHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHhCCH-------HHHHHHHHHHhhcccCCC
Confidence            99999999999 885       778999999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.35  E-value=9.7e-12  Score=110.52  Aligned_cols=106  Identities=11%  Similarity=0.065  Sum_probs=102.2

Q ss_pred             CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284           80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY  159 (284)
Q Consensus        80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~  159 (284)
                      |.+..++..+|.++...| ++++++..+++++..+|.+..+|..++.++..+|+  +++++..++++++++|.+..+|+.
T Consensus         1 p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~   77 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELDGQSVKAHFF   77 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCCHHHHHH
Confidence            678899999999999999 69999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          160 RQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       160 r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      +|.++..+|++++|+..+.++++++|.+.
T Consensus        78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           78 LGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999999999873

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.35  E-value=4.6e-12  Score=98.58  Aligned_cols=103  Identities=9%  Similarity=-0.081  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      ..|..++.++...|+  +++++..++++++++|.+..+|+.+|.++..+|++++|+.+++++++++|.+..+|..++.++
T Consensus        18 ~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           18 ENPMEEGLSMLKLAN--LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             SCHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            357888999999999  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          199 TRSPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       199 ~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      ..+++       +++++..+.++++++|++..
T Consensus        96 ~~~g~-------~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           96 TNEHN-------ANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHH-------HHHHHHHHHHHHC-------
T ss_pred             HHcCC-------HHHHHHHHHHHHHhCcCCCC
Confidence            88877       47899999999999998753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.35  E-value=1.3e-11  Score=108.07  Aligned_cols=197  Identities=10%  Similarity=-0.007  Sum_probs=155.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh------CCCChHH
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKS------NSKNYQL  120 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------~pkn~~a  120 (284)
                      .+...+..+...+..++|+.++++++.++|++    ..++...+.+....| ++++++.++++++..      .|....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            44455666667778899999999999999998    478889999999988 699999999999887      6667889


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHHccC--------------------cHHHH
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQALGG--------------------WEDEL  174 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~l~~--------------------~~eeL  174 (284)
                      +...+.++...|+  +++++..+.+++++.++...      ++...+.++...|+                    +++++
T Consensus        86 ~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           86 SGNLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccC--HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            9999999999999  99999999999998776644      89999999999999                    99999


Q ss_pred             HHHHHHHhc------cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHHHHHHHccC
Q 023284          175 DYCQMLLGE------DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRYLRGLYKDD  242 (284)
Q Consensus       175 ~~~~~~l~~------dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y~~~ll~~~  242 (284)
                      +++.+++..      .+....++...+.++...+++       +++++++.+++.+.|....      ++..+..++...
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL  236 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence            999998887      444456788888888777774       6677788888777665544      666666555544


Q ss_pred             CccCCCChhhHHHHHhhhh
Q 023284          243 TESWINDPRMLLSVFESFE  261 (284)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~  261 (284)
                      +    +..+++..+.++++
T Consensus       237 g----~~~~A~~~~~~al~  251 (338)
T 3ro2_A          237 G----EFETASEYYKKTLL  251 (338)
T ss_dssp             T----CHHHHHHHHHHHHH
T ss_pred             C----CHHHHHHHHHHHHH
Confidence            3    34455555555543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.35  E-value=8.9e-12  Score=114.09  Aligned_cols=204  Identities=10%  Similarity=-0.036  Sum_probs=162.8

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhhhC-----------------HH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL------NPGNYTVWHFRRQIIETLHTD-----------------LQ  101 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l------nP~~~~aW~~R~~~L~~l~~~-----------------~~  101 (284)
                      .|....++...+.++...+..++|+..+.+++.+      .|....++...+.++..+| +                 ++
T Consensus       122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~  200 (411)
T 4a1s_A          122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALT  200 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHH
Confidence            4666777888888888888889999999999998      6777889999999999888 6                 88


Q ss_pred             HHHHHHHHHHHhC------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHHccC
Q 023284          102 DELAFVGRIAKSN------SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQALGG  169 (284)
Q Consensus       102 ~eL~~~~~~l~~~------pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~l~~  169 (284)
                      +++.++++++.+.      |....++...+.++...|+  +++++.++.+++++.+++..      ++...+.++...|+
T Consensus       201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  278 (411)
T 4a1s_A          201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD--FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ  278 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence            9999999988764      3445688889999999999  99999999999999887666      89999999999999


Q ss_pred             cHHHHHHHHHHHhccCCC------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHHHHH
Q 023284          170 WEDELDYCQMLLGEDIFN------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRYLRG  237 (284)
Q Consensus       170 ~~eeL~~~~~~l~~dp~n------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y~~~  237 (284)
                      +++|+.+++++++..+..      ..++..++.++...+++       ++++.++.+++.+.+....      ++..+..
T Consensus       279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  351 (411)
T 4a1s_A          279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF-------NTAIEYHNRHLAIAQELGDRIGEARACWSLGN  351 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            999999999999998865      57788888888888874       6778888888877655433      5555555


Q ss_pred             HHccCCccCCCChhhHHHHHhhhhc
Q 023284          238 LYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       238 ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      ++...+    +..++...+.++++-
T Consensus       352 ~~~~~g----~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          352 AHSAIG----GHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHTT----CHHHHHHHHHHHHHH
T ss_pred             HHHHhc----cHHHHHHHHHHHHHH
Confidence            555543    355666666665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=7.2e-13  Score=121.23  Aligned_cols=160  Identities=13%  Similarity=0.054  Sum_probs=94.1

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      .++...++...+..+.+.+..++|+..+.++|.++|.+..        +..++ .+.+++..+.         ..+|+++
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~-~~~~~~~~l~---------~~~~~nl  236 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYG-KYQDMALAVK---------NPCHLNI  236 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCH-HHHHHHHHHH---------THHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcc-cHHHHHHHHH---------HHHHHHH
Confidence            3556667777777887888888999999999999888652        11222 1333332221         2488999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      +.++..+|+  +++++..|+++|+++|.|..+|+.++.++..+|++++|+.++.++++++|.|..++...+.+.......
T Consensus       237 a~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~  314 (338)
T 2if4_A          237 AACLIKLKR--YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL  314 (338)
T ss_dssp             HHHHHTTTC--CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred             HHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999998  999999999999999999999999999999999999999999999999999999998887665443322


Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          205 GGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       205 ~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                            .+++...+.+++...|++..
T Consensus       315 ------~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          315 ------YQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             --------------------------
T ss_pred             ------HHHHHHHHHHhhCCCCCCCC
Confidence                  35566788888889888753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.34  E-value=3.5e-11  Score=89.72  Aligned_cols=114  Identities=11%  Similarity=0.072  Sum_probs=105.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      ...+|...+.++...|+  +++++.++++++..+|.+..+|..++.++...|++++|+.++.++++.+|.+..+|..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGN--IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            45678889999999999  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284          197 VVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY  239 (284)
Q Consensus       197 ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll  239 (284)
                      ++..++++       +++++++.+++..+|++..+|..+..+.
T Consensus        81 ~~~~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           81 ALEFLNRF-------EEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHTTCH-------HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhhH-------HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99998874       7889999999999999999987765543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.33  E-value=5.9e-13  Score=127.61  Aligned_cols=136  Identities=13%  Similarity=0.051  Sum_probs=119.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG  134 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~  134 (284)
                      .+.++.+.+..++|+++++++|+++|++..+|+.++.++..+| ++++|++++++++.++|++..+|+.++.++..+|+ 
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence            3344455667799999999999999999999999999999999 69999999999999999999999999999999999 


Q ss_pred             CHHHHHHHHHHHHHhCcCChhHHhHHHHH--HHHccCcHHHHHHHH-----------HHHhccCCChHHHHH
Q 023284          135 AVNKELQFTKKMLSLDAKNYHAWSYRQWV--LQALGGWEDELDYCQ-----------MLLGEDIFNNSAWNQ  193 (284)
Q Consensus       135 ~~~eel~~~~~aL~~dpkN~~AW~~r~~v--l~~l~~~~eeL~~~~-----------~~l~~dp~n~sAW~~  193 (284)
                       +++|++.++++++++|.+..+|...+.+  +...+++++|++.++           ++++++|++..++..
T Consensus        90 -~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  160 (477)
T 1wao_1           90 -FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE  160 (477)
T ss_dssp             -HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence             9999999999999999999999999988  777899999999999           999999887666543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.33  E-value=3.8e-13  Score=120.77  Aligned_cols=181  Identities=8%  Similarity=-0.104  Sum_probs=159.1

Q ss_pred             eeecChhHHHHHHHH-------HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHH---------------------HHHH
Q 023284           41 PIAYKPEFSETMSYF-------RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHF---------------------RRQI   92 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~-------r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~---------------------R~~~   92 (284)
                      .+.++|+..++|..+       +.++....++.+++......+.+.|....+|+.                     ...+
T Consensus        32 a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~  111 (282)
T 4f3v_A           32 ITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC  111 (282)
T ss_dssp             HHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred             HHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence            456899999999999       788888888899999999999999998888877                     4567


Q ss_pred             HHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-cCC-hhHHhHHHHHHHHccCc
Q 023284           93 IETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD-AKN-YHAWSYRQWVLQALGGW  170 (284)
Q Consensus        93 L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d-pkN-~~AW~~r~~vl~~l~~~  170 (284)
                      |...| +++++.+.++.++..+|... +.+.++.+..+.++  +++++..+..++... |.+ ..++++.|.++..+|++
T Consensus       112 L~~~g-~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r--~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~  187 (282)
T 4f3v_A          112 EAAQG-NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER--WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF  187 (282)
T ss_dssp             HHHHT-CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC--HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHCC-CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC--HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence            77788 69999999999999999999 99999999999999  999999999887753 322 35899999999999999


Q ss_pred             HHHHHHHHHHHhcc--CC-ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284          171 EDELDYCQMLLGED--IF-NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWR  233 (284)
Q Consensus       171 ~eeL~~~~~~l~~d--p~-n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~  233 (284)
                      ++|+.++++++...  |. ...++.+++.++..+|+.       +++...+++++..+|+ +.++.
T Consensus       188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~-------deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE-------SAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCCc-HHHHH
Confidence            99999999999765  66 567999999999999984       7889999999999999 77664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.32  E-value=1.3e-11  Score=96.69  Aligned_cols=103  Identities=11%  Similarity=0.025  Sum_probs=91.5

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH-------
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS-------  189 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s-------  189 (284)
                      ...+|...|.++.+.|+  +++|+.+|+++|+++|.+..+|+++|.++..+|++++|+++++++|+++|.+..       
T Consensus         7 ~A~a~~~lG~~~~~~~~--~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKD--FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            34567788999999999  999999999999999999999999999999999999999999999999998864       


Q ss_pred             HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284          190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN  228 (284)
Q Consensus       190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n  228 (284)
                      ++..+|.++..++.       ++++++++.++|..+|+.
T Consensus        85 ~~~~lg~~~~~~~~-------~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           85 AMSRAGNAFQKQND-------LSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHHTTC-------HHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCcCH
Confidence            56666777777776       488999999999999864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.31  E-value=1.5e-11  Score=107.57  Aligned_cols=205  Identities=9%  Similarity=-0.021  Sum_probs=161.3

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhC-------------------
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETLHTD-------------------   99 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l~~~-------------------   99 (284)
                      .|....++...+.++...+..++|+..+.+++.+.|+.      ..++...+.++..+| +                   
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~  157 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRN  157 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHH
Confidence            34456667777777777888899999999999887654      348888899988888 5                   


Q ss_pred             -HHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHH
Q 023284          100 -LQDELAFVGRIAKS------NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQA  166 (284)
Q Consensus       100 -~~~eL~~~~~~l~~------~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~  166 (284)
                       +++++..+++++..      .|....++...+.++...|+  +++++.++++++++.+++..      ++...+.++..
T Consensus       158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (338)
T 3ro2_A          158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence             88999999988876      44556688889999999999  99999999999998777655      89999999999


Q ss_pred             ccCcHHHHHHHHHHHhccCCC------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHH
Q 023284          167 LGGWEDELDYCQMLLGEDIFN------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRY  234 (284)
Q Consensus       167 l~~~~eeL~~~~~~l~~dp~n------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y  234 (284)
                      .|++++|+.++++++++.+..      ..++...+.++...+++       ++++.++.+++.+.|....      ++..
T Consensus       236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  308 (338)
T 3ro2_A          236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-------EKAIDYHLKHLAIAQELKDRIGEGRACWS  308 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            999999999999999998876      67788888888888874       7788888888877665433      5555


Q ss_pred             HHHHHccCCccCCCChhhHHHHHhhhhcc
Q 023284          235 LRGLYKDDTESWINDPRMLLSVFESFEYQ  263 (284)
Q Consensus       235 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  263 (284)
                      +..++...+    +..++...+.+++.-.
T Consensus       309 la~~~~~~g----~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          309 LGNAYTALG----NHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHT----CHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHcC----ChHHHHHHHHHHHHHH
Confidence            555555543    3566777777666543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.30  E-value=8.7e-12  Score=113.99  Aligned_cols=103  Identities=7%  Similarity=0.025  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284           84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV  163 (284)
Q Consensus        84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v  163 (284)
                      .+|+.++.++..++ ++++++..++++|.++|++..+|+.++.++..+|+  +++|+.++.++++++|.|..++...+.+
T Consensus       231 ~~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          231 PCHLNIAACLIKLK-RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HHHHHHHHHHHTTT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC---------------
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            48999999999999 59999999999999999999999999999999999  9999999999999999999999998887


Q ss_pred             HHHc-cCcHHHHHHHHHHHhccCCChH
Q 023284          164 LQAL-GGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       164 l~~l-~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      .... +..+++...+.+++..+|.+..
T Consensus       308 ~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          308 AEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            5543 4567888999999999998753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.4e-10  Score=90.50  Aligned_cols=122  Identities=14%  Similarity=0.008  Sum_probs=114.6

Q ss_pred             HHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284           76 ICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK  152 (284)
Q Consensus        76 L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk  152 (284)
                      ...+|.+..+|+.++.+....| ++++++.++++++..+|.+   ..+|..++.++..+|+  +++++.+++++++++|.
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELFKCG-DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--YDKAETEASKAIEKDGG   97 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTSC
T ss_pred             CccchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHhhCcc
Confidence            3467899999999999999989 6999999999999999998   9999999999999999  99999999999999999


Q ss_pred             ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          153 NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       153 N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      +..+|..++.++..++++++|+.++.++++++|.+..+|.....+..+
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999887776544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.29  E-value=4.5e-11  Score=109.46  Aligned_cols=209  Identities=9%  Similarity=0.035  Sum_probs=162.2

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPG-------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN  117 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~-------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn  117 (284)
                      .+....++...+.++...+..++|+..+.+++.+.++       ...+++..|.++..+| ++++|+.++++++...++.
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~  217 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK-QYEDAISHFQKAYSMAEAE  217 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHc
Confidence            3445677888888888888889999999999998444       4568999999999999 6999999999999887655


Q ss_pred             h------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hC-cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc-
Q 023284          118 Y------QLWHHRRWVAEKLGTGAVNKELQFTKKMLS-----LD-AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED-  184 (284)
Q Consensus       118 ~------~aW~hR~~ll~~l~~~~~~eel~~~~~aL~-----~d-pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d-  184 (284)
                      .      .++++.|.++..+|+  +++|+.++.++++     .+ |....++.+.|.++..+|++++|++++++++++. 
T Consensus       218 ~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          218 KQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4      589999999999999  9999999999999     57 8889999999999999999999999999999984 


Q ss_pred             ----CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284          185 ----IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESF  260 (284)
Q Consensus       185 ----p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  260 (284)
                          |.....+...+.+....+..    ..+++++..+.+. ...|....++..++.++...+    ++..+...+.+++
T Consensus       296 ~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g----~~~~A~~~~~~al  366 (383)
T 3ulq_A          296 KAGDVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERK----NFQKASAYFLKVE  366 (383)
T ss_dssp             HHTCHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence                44444455566666666553    2346677777665 333333446666666666554    3567777777776


Q ss_pred             hcccc
Q 023284          261 EYQKQ  265 (284)
Q Consensus       261 ~~~~~  265 (284)
                      +-.+.
T Consensus       367 ~~~~~  371 (383)
T 3ulq_A          367 QVRQL  371 (383)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            55443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.29  E-value=2.9e-11  Score=99.42  Aligned_cols=89  Identities=10%  Similarity=0.101  Sum_probs=61.1

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDERS----------SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGR  109 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~s----------~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~  109 (284)
                      .+|+++|++.++|..++.++...++.          ++|+..++++|+++|++..+|+.+|.++..+|. +         
T Consensus        27 ~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~-l---------   96 (158)
T 1zu2_A           27 NTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF-L---------   96 (158)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-H---------
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc-c---------
Confidence            45778999999999888888765442          477777777777777777777777777776652 1         


Q ss_pred             HHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284          110 IAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY  154 (284)
Q Consensus       110 ~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~  154 (284)
                          .|+...+          .|+  +++++.+|+++|+++|.|.
T Consensus        97 ----~P~~~~a----------~g~--~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           97 ----TPDETEA----------KHN--FDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             ----CCCHHHH----------HHH--HHHHHHHHHHHHHHCTTCH
T ss_pred             ----Ccchhhh----------hcc--HHHHHHHHHHHHHhCCCCH
Confidence                3333222          134  6777777777777777763

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.29  E-value=2.2e-10  Score=86.00  Aligned_cols=117  Identities=18%  Similarity=0.268  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA  128 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll  128 (284)
                      ..++...+.++...+..++|+.++.+++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|...+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            5677777777777888899999999999999999999999999999999 699999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284          129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG  168 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~  168 (284)
                      ...|+  +++++..++++++++|.+..++...+.+....|
T Consensus        88 ~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999  999999999999999999999999888876543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.28  E-value=4.5e-11  Score=107.12  Aligned_cols=176  Identities=7%  Similarity=0.046  Sum_probs=145.3

Q ss_pred             ChhHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC
Q 023284           45 KPEFSETMSYFRA---VYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS  115 (284)
Q Consensus        45 ~p~~~~a~~~~r~---~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p  115 (284)
                      .+++..|..++..   ++...+..++|+.++.+++.+.++.      ..++...+.++..+| ++++++.++++++.+.+
T Consensus        29 ~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~~  107 (307)
T 2ifu_A           29 KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ-RMPEAVQYIEKASVMYV  107 (307)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CGGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            4677777666543   4566778899999999999987643      568888899999988 69999999999998854


Q ss_pred             CC------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284          116 KN------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       116 kn------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~  183 (284)
                      +.      ..++...+.++.. |+  +++++.++.+++++.+..      ..++...+.++..+|++++|++++++++++
T Consensus       108 ~~g~~~~~a~~~~~lg~~~~~-g~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          108 ENGTPDTAAMALDRAGKLMEP-LD--LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTT-TC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            32      4678888999988 88  999999999999998865      578899999999999999999999999999


Q ss_pred             cCCChH------HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284          184 DIFNNS------AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       184 dp~n~s------AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW  232 (284)
                      .|.+..      ++..++.+...++++       ++++.++++++ ++|+.....
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~-------~~A~~~~~~al-~~p~~~~~~  231 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADY-------VAAQKCVRESY-SIPGFSGSE  231 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHT-TSTTSTTSH
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHh-CCCCCCCCH
Confidence            887642      666677777777774       78999999999 999876543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.28  E-value=5.4e-13  Score=127.87  Aligned_cols=138  Identities=12%  Similarity=0.088  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHH
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW  162 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~  162 (284)
                      ..+|+.++.++...| ++++|++++++++..+|.+..+|..++.++..+|+  +++|+++++++++++|.+..+|+.++.
T Consensus         6 a~~~~~lg~~~~~~g-~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            6 AEELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--YGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HTTSSSSSSSTTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344555555666667 69999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH--HhcCCCCchhhhhHHHHHHHHH-----------HHHhcCCCCc
Q 023284          163 VLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV--VTRSPLLGGLIAMRDSEVNFTI-----------EAILGNPENE  229 (284)
Q Consensus       163 vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l--l~~l~~~~~~~~~~~~el~~~~-----------~~i~~~P~ne  229 (284)
                      ++..+|++++|+++++++++++|.+..++...+.+  +...+++       +++++.+.           +++.++|+..
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-------ERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH-------CCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-------HHHhccccccchhHhhhhhhhcccccccc
Confidence            99999999999999999999999999999999877  4433332       33455555           5566666543


Q ss_pred             c
Q 023284          230 S  230 (284)
Q Consensus       230 s  230 (284)
                      .
T Consensus       156 ~  156 (477)
T 1wao_1          156 G  156 (477)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.26  E-value=1.4e-10  Score=88.07  Aligned_cols=117  Identities=11%  Similarity=0.026  Sum_probs=101.4

Q ss_pred             CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------
Q 023284           80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------  153 (284)
Q Consensus        80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------  153 (284)
                      |+...+|+..+.+....| ++++++.++++++..+|.+..+|...+.++...|+  +++++.++.++++++|.+      
T Consensus         1 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKK-DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--YNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             ChHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhccccchhHHH
Confidence            445678888888888888 69999999999999999999999999999999998  999999999999999888      


Q ss_pred             -hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          154 -YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       154 -~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                       ..+|...+.++..+|++++|+++++++++.+| +..++...+.+...
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence             88999999999999999999999999999988 67777666655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.26  E-value=6.4e-10  Score=98.50  Aligned_cols=166  Identities=8%  Similarity=-0.027  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-----
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT------VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-----  117 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~------aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-----  117 (284)
                      ...+......+...+..++|++.+.+++...|....      ..+..+.+....| ++++++.++++++...++.     
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCchHH
Confidence            333333333444566679999999999999887542      2334455555555 6999999999999877665     


Q ss_pred             -hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCcCCh----hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC--
Q 023284          118 -YQLWHHRRWVAEKLGTGAVNKELQFTKKML---SLDAKNY----HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN--  187 (284)
Q Consensus       118 -~~aW~hR~~ll~~l~~~~~~eel~~~~~aL---~~dpkN~----~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n--  187 (284)
                       ..+++..|.++...|+  +++++.++++++   +..|.+.    .++++.|.++..+|++++|++++++++++.+..  
T Consensus       154 ~~~~~~~lg~~y~~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          154 NLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence             6789999999999999  999999999999   4555543    699999999999999999999999999987532  


Q ss_pred             ----hHHHHHHHHHHhcCCCCchhhhhHHHH-HHHHHHHHhc
Q 023284          188 ----NSAWNQRYFVVTRSPLLGGLIAMRDSE-VNFTIEAILG  224 (284)
Q Consensus       188 ----~sAW~~r~~ll~~l~~~~~~~~~~~~e-l~~~~~~i~~  224 (284)
                          ..++++.|.+...++.+       +++ ..++.+++.+
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~-------~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYE-------EAEIEDAYKKASFF  266 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHH
Confidence                67889999999999986       556 5566666643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.23  E-value=3.6e-10  Score=86.59  Aligned_cols=110  Identities=5%  Similarity=-0.223  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHh
Q 023284           85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWS  158 (284)
Q Consensus        85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~  158 (284)
                      +++.++.++...| ++++++..+++++..+|.+.   .+|...+.++...|+  +++++..++++++.+|.+   ..++.
T Consensus         4 ~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            4 TAYNVAFDALKNG-KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--FQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             CHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            4667788888888 68999999999999999988   799999999999998  999999999999999999   78899


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284          159 YRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       159 ~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l  197 (284)
                      .++.++..+|++++|+..+++++..+|++..+...+..+
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            999999999999999999999999999988877665544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.20  E-value=3.1e-11  Score=92.46  Aligned_cols=96  Identities=10%  Similarity=0.080  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHH
Q 023284          100 LQDELAFVGRIAKS---NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDY  176 (284)
Q Consensus       100 ~~~eL~~~~~~l~~---~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~  176 (284)
                      +++++.++++++..   +|.+..+|...|.++..+|+  +++++.+++++++++|.+..++.+.+.++..+|++++|+++
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            45556666666665   46666666666666666666  66666666666666666666666666666666666666666


Q ss_pred             HHHHHhccCCChHHHHHHHHH
Q 023284          177 CQMLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       177 ~~~~l~~dp~n~sAW~~r~~l  197 (284)
                      +.++++.+|.+..+..+...+
T Consensus        84 ~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           84 LLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHH
Confidence            666666666666555444433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.18  E-value=5.6e-10  Score=102.21  Aligned_cols=163  Identities=7%  Similarity=-0.092  Sum_probs=139.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC-------ChHHH
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLN------PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK-------NYQLW  121 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~ln------P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk-------n~~aW  121 (284)
                      .+......+..++|+..+.+++.+.      |....+++..|.+...+| ++.+++.++.+++...++       ...++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK-QTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            4555556777899999999999873      345678899999999999 699999999999987654       24578


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC------ChhHHhHHHHHHHHccCcHHHHHHHHHHHh-----ccCCChHH
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAK------NYHAWSYRQWVLQALGGWEDELDYCQMLLG-----EDIFNNSA  190 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk------N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~-----~dp~n~sA  190 (284)
                      +..|.++..+|+  +++|++++.+++++.++      ...++++.|.++..+|++++|++++.++++     .+|....+
T Consensus       186 ~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          186 FVIAGNYDDFKH--YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHhCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            889999999999  99999999999997432      235788999999999999999999999999     89999999


Q ss_pred             HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284          191 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE  227 (284)
Q Consensus       191 W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~  227 (284)
                      +...|.+...++.+       ++++.++++++.+.+.
T Consensus       264 ~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          264 LFGLSWTLCKAGQT-------QKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHTTCH-------HHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHH
Confidence            99999999999884       7889999999988654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.18  E-value=8e-11  Score=90.17  Aligned_cols=103  Identities=15%  Similarity=0.104  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 023284           63 ERSSRSFQLTKEAICL---NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKE  139 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~l---nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ee  139 (284)
                      +..++|+.+++++|.+   +|++..+|..++.++..+| ++++++.++++++..+|++..++...+.++..+|+  ++++
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A   80 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR--YEQG   80 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC--HHHH
Confidence            4557899999999999   5999999999999999999 69999999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284          140 LQFTKKMLSLDAKNYHAWSYRQWVLQALG  168 (284)
Q Consensus       140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~  168 (284)
                      +..+.++++.+|.+.....+...+....+
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999988777655544433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=9.8e-10  Score=93.24  Aligned_cols=180  Identities=8%  Similarity=-0.086  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC----CCCHHHHHHH
Q 023284           67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG----TGAVNKELQF  142 (284)
Q Consensus        67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~----~~~~~eel~~  142 (284)
                      +|+..+.++...  .+..+++..+.++...+ ++++++.++++++..  .+..+++..+.++.. +    +  +++++.+
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~--~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSG-DYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD--YPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC--HHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC--HHHHHHH
Confidence            466666666654  56777777777776655 577777777777654  466777777776665 4    3  6777777


Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccC--CChHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDI--FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN  216 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp--~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~  216 (284)
                      +.+++  ++.+..++++.+.++..    .+++++|++++.++++..|  .+..|++..+.++..-....   .-+++++.
T Consensus        76 ~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~---~d~~~A~~  150 (212)
T 3rjv_A           76 AEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP---EDDVKASE  150 (212)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS---CCHHHHHH
T ss_pred             HHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC---CCHHHHHH
Confidence            77774  34566777777776655    5566777777777777766  34667777776665421100   01356677


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHccCCc--cCCCChhhHHHHHhhh
Q 023284          217 FTIEAILGNPENESPWRYLRGLYKDDTE--SWINDPRMLLSVFESF  260 (284)
Q Consensus       217 ~~~~~i~~~P~nesaW~y~~~ll~~~~~--~~~~~~~~~~~~~~~~  260 (284)
                      ++.+++.. |++..+.+.+..++.....  .-.+.+.++..+..++
T Consensus       151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            77777766 5566666555555544322  1223345555554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.16  E-value=1.9e-10  Score=106.68  Aligned_cols=118  Identities=8%  Similarity=-0.054  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHH----------------hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAK----------------SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM  146 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~----------------~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a  146 (284)
                      ..+|..++.++...+ ++++|+.++++++.                .+|.+..+|..++.++.++|+  +++++.+++++
T Consensus       223 a~~~~~~g~~~~~~g-~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--~~~A~~~~~~a  299 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQ-NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--WQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHH
Confidence            345666666666666 47777777777776                788888999999999999998  99999999999


Q ss_pred             HHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284          147 LSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       147 L~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~  203 (284)
                      |+++|.+..+|+.++.++..++++++|+++++++++++|.|..++...+.++..++.
T Consensus       300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888887766544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.15  E-value=2.3e-09  Score=94.88  Aligned_cols=155  Identities=7%  Similarity=-0.043  Sum_probs=123.3

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCcHH----HHHH--HHHHHHHhhhCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHH
Q 023284           61 SDERSSRSFQLTKEAICLNPGNYT----VWHF--RRQIIETLHTDLQDELAFVGRIAKSNSKNY------QLWHHRRWVA  128 (284)
Q Consensus        61 ~~~~s~~aL~~~~~~L~lnP~~~~----aW~~--R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~------~aW~hR~~ll  128 (284)
                      ..+..++|+.++.+++...+.+..    +.++  .+.+....+ ++++++.++++++...++..      .+++..|.++
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            345568999999999998887665    3223  334333333 68999999999999765543      3789999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHH-------hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC------hHHHHHHH
Q 023284          129 EKLGTGAVNKELQFTKKMLS-------LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN------NSAWNQRY  195 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~-------~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n------~sAW~~r~  195 (284)
                      ..+|+  +++|+.++.++++       ..+....++++.|.++..+|++++|++++++++++.+..      ..+++++|
T Consensus       166 ~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  243 (293)
T 3u3w_A          166 AENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG  243 (293)
T ss_dssp             HHTTC--HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred             HHcCC--HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            99999  9999999999995       233445689999999999999999999999999988665      67899999


Q ss_pred             HHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284          196 FVVTRSPLLGGLIAMRDSEVNFTIEAILG  224 (284)
Q Consensus       196 ~ll~~l~~~~~~~~~~~~el~~~~~~i~~  224 (284)
                      .+...++..      ++++++++.+++.+
T Consensus       244 ~~~~~~g~~------~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          244 ECLRKLEYE------EAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred             HHHHHhCCc------HHHHHHHHHHHHHH
Confidence            999999853      36678888887754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.14  E-value=1.2e-09  Score=82.79  Aligned_cols=118  Identities=12%  Similarity=0.021  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------hH
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------YQ  119 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------~~  119 (284)
                      +...++...+.+....+..++|+.++.+++..+|.+..+|..++.++...| ++++++.++++++..+|.+       ..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            445677777888888888899999999999999999999999999999999 6999999999999999988       99


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG  168 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~  168 (284)
                      +|...+.++..+|+  +++++.++.++++++| +...+...+.+...++
T Consensus        81 ~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           81 AYARIGNSYFKEEK--YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHTTC--HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999  9999999999999999 7888887777766554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.14  E-value=4.4e-10  Score=104.20  Aligned_cols=125  Identities=12%  Similarity=0.037  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAIC----------------LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRI  110 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~----------------lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~  110 (284)
                      +...++...+..+.+.+..++|+..++++|.                ++|.+..+|+.++.++..++ ++++++.+++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~a  299 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-DWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHH
Confidence            3445677777788888888999999999999                88999999999999999999 699999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284          111 AKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL  174 (284)
Q Consensus       111 l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL  174 (284)
                      +.++|.+..+|+.++.++..+|+  +++|+..+.++++++|.|..++...+.+...++..+++.
T Consensus       300 l~~~p~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999  999999999999999999999999999998888776554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.13  E-value=2.5e-11  Score=108.91  Aligned_cols=184  Identities=11%  Similarity=0.006  Sum_probs=154.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH-----------
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFR-------RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH-----------  123 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R-------~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h-----------  123 (284)
                      .....+|++.|++++.++|+...+|..|       +.+|..+++ ..+.+..+.+.+.+.|....+|+.           
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r-~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY-SRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH-TGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH-HHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            3455899999999999999999999999       899999996 578899999999999999988887           


Q ss_pred             ----------HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc-CCC-hHHH
Q 023284          124 ----------RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED-IFN-NSAW  191 (284)
Q Consensus       124 ----------R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d-p~n-~sAW  191 (284)
                                ...++...|+  ++++.+.++.++..+|.+. +.+.++.+..+.++|++++.++++++... |.+ ..++
T Consensus        98 v~~r~dl~LayA~~L~~~g~--y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~  174 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGN--YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG  174 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTC--HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence                      4567888899  9999999999999999999 99999999999999999999999887753 222 3589


Q ss_pred             HHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC--CC-CccHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284          192 NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN--PE-NESPWRYLRGLYKDDTESWINDPRMLLSVFESF  260 (284)
Q Consensus       192 ~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~--P~-nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  260 (284)
                      ++.|.++..+|+.       ++++.++++++.-.  |. ...++++++.++...++    ..++...+-+.+
T Consensus       175 ~~LG~al~~LG~~-------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr----~deA~~~l~~a~  235 (282)
T 4f3v_A          175 VAHGVAAANLALF-------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN----ESAAVALLEWLQ  235 (282)
T ss_dssp             HHHHHHHHHTTCH-------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCH-------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence            9999999999984       88999999998544  55 44588888888887764    345555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.13  E-value=1.1e-09  Score=83.75  Aligned_cols=109  Identities=9%  Similarity=-0.079  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC---hHHHHH
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN---NSAWNQ  193 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n---~sAW~~  193 (284)
                      +++.++.++...|+  +++++..++++++.+|.+.   .+|...|.++...|++++|+.++++++..+|++   ..++..
T Consensus         4 ~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            4 TAYNVAFDALKNGK--YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCC--HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            46778888899999  9999999999999999999   799999999999999999999999999999999   888999


Q ss_pred             HHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284          194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG  237 (284)
Q Consensus       194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~  237 (284)
                      ++.++..++.+       ++++..+.+++..+|+++.+..-+..
T Consensus        82 la~~~~~~g~~-------~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           82 LGLSQYGEGKN-------TEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHHHHTTCH-------HHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHcCCH-------HHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            99999999884       78999999999999999877654433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.06  E-value=3.9e-09  Score=96.54  Aligned_cols=206  Identities=8%  Similarity=-0.044  Sum_probs=151.8

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC--
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPG-------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK--  116 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~-------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk--  116 (284)
                      +....++...+.++...+..++|+..+.+++.+.++       ...+++..|.+...+| ++++|++++++++.+.++  
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK-HYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcC
Confidence            455667777788888888889999999999987553       3567888999999999 699999999999986432  


Q ss_pred             ----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC-
Q 023284          117 ----NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLS-----LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF-  186 (284)
Q Consensus       117 ----n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~-----~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~-  186 (284)
                          ...+++..|.++..+|+  +++|+.++.++++     .+|....++...+.++..+|++++|++++++++++.+. 
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGD--DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             CHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence                24578889999999999  9999999999999     89999999999999999999999999999999998543 


Q ss_pred             ----ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          187 ----NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       187 ----n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                          ........+.+....+..    ..+++++.++.+ ....|....++..++.++...+    ++..++..+.++++-
T Consensus       295 ~~~~~~~~~~~l~~ly~~~~~~----~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g----~~~~A~~~~~~al~~  365 (378)
T 3q15_A          295 SHKFYKELFLFLQAVYKETVDE----RKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSC----HFEQAAAFYRKVLKA  365 (378)
T ss_dssp             CCSCHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
Confidence                333333333333333321    234666766655 2222333334545555555543    456777777776654


Q ss_pred             c
Q 023284          263 Q  263 (284)
Q Consensus       263 ~  263 (284)
                      .
T Consensus       366 ~  366 (378)
T 3q15_A          366 Q  366 (378)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.04  E-value=1e-08  Score=86.83  Aligned_cols=178  Identities=7%  Similarity=-0.043  Sum_probs=145.8

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSNSKNYQLWHH  123 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~aW~h  123 (284)
                      ..++.++...+.++...+..++|+..+.+++..  .+..+++..+.++..-|  .++++++.++++++.  +.+..+++.
T Consensus        15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            456788888888888888889999999999875  68999999999987722  269999999999964  679999999


Q ss_pred             HHHHHHH----hCCCCHHHHHHHHHHHHHhCc--CChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284          124 RRWVAEK----LGTGAVNKELQFTKKMLSLDA--KNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNSAWNQ  193 (284)
Q Consensus       124 R~~ll~~----l~~~~~~eel~~~~~aL~~dp--kN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~sAW~~  193 (284)
                      .+.++..    .++  +.+++.++.++++..+  .+..++++.+.++..    .+++++|+.++.++++. |.+..|+++
T Consensus        91 Lg~~y~~g~g~~~d--~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~  167 (212)
T 3rjv_A           91 LARVLVNRQAGATD--VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW  167 (212)
T ss_dssp             HHHHHTCGGGSSCC--HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred             HHHHHHcCCCCccC--HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence            9999876    555  9999999999999999  469999999999988    77899999999999999 888889999


Q ss_pred             HHHHHhcCCC--CchhhhhHHHHHHHHHHHHhcCCCCccHHHHH
Q 023284          194 RYFVVTRSPL--LGGLIAMRDSEVNFTIEAILGNPENESPWRYL  235 (284)
Q Consensus       194 r~~ll~~l~~--~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~  235 (284)
                      .+.++..-..  ..   .-+++++.++.++++..  ++.+-..+
T Consensus       168 Lg~~y~~g~gg~~~---~d~~~A~~~~~~A~~~g--~~~A~~~l  206 (212)
T 3rjv_A          168 AGMMFQQGEKGFIE---PNKQKALHWLNVSCLEG--FDTGCEEF  206 (212)
T ss_dssp             HHHHHHHCBTTTBC---CCHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred             HHHHHHcCCCCCCC---CCHHHHHHHHHHHHHcC--CHHHHHHH
Confidence            9998765421  10   01478899999998774  44444333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.03  E-value=2.4e-09  Score=81.13  Aligned_cols=84  Identities=13%  Similarity=0.075  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284          102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLL  181 (284)
Q Consensus       102 ~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l  181 (284)
                      +++..+++++..+|.+..+|+..+.++...|+  +++++.++.++++++|.+..+|...+.++...|++++|+.++.+++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666666666666666666666666666  6666666666666666666666666666666666666666666666


Q ss_pred             hccCCC
Q 023284          182 GEDIFN  187 (284)
Q Consensus       182 ~~dp~n  187 (284)
                      +++|.+
T Consensus        81 ~~~~~~   86 (115)
T 2kat_A           81 AAAQSR   86 (115)
T ss_dssp             HHHHHH
T ss_pred             Hhcccc
Confidence            666543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.01  E-value=6.4e-09  Score=78.75  Aligned_cols=86  Identities=7%  Similarity=-0.023  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284           67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM  146 (284)
Q Consensus        67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a  146 (284)
                      +|+..+.+++..+|++..+|+..+.++...| ++++++.++++++..+|.+..+|...+.++..+|+  +++++..+.++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--RAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence            5889999999999999999999999999999 69999999999999999999999999999999999  99999999999


Q ss_pred             HHhCcCChh
Q 023284          147 LSLDAKNYH  155 (284)
Q Consensus       147 L~~dpkN~~  155 (284)
                      ++++|.+..
T Consensus        80 l~~~~~~~~   88 (115)
T 2kat_A           80 LAAAQSRGD   88 (115)
T ss_dssp             HHHHHHHTC
T ss_pred             HHhcccccc
Confidence            999986543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.00  E-value=1.8e-08  Score=89.14  Aligned_cols=171  Identities=7%  Similarity=-0.142  Sum_probs=129.8

Q ss_pred             HhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 023284           77 CLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL------WHHRRWVAEKLGTGAVNKELQFTKKMLSLD  150 (284)
Q Consensus        77 ~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a------W~hR~~ll~~l~~~~~~eel~~~~~aL~~d  150 (284)
                      ..+|.....+..+...+...| +++++++++.+++...|.....      .+..+.++...|+  +++++.++.+++++.
T Consensus        69 ~~~~~~~~~l~~~~~~~~~~~-~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~  145 (293)
T 2qfc_A           69 YSDIERKKQFKDQVIMLCKQK-RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--YEYCILELKKLLNQQ  145 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--HHHHHHHHHHHHTTC
T ss_pred             ccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHH
Confidence            345666677777777777778 6999999999999998876532      3344555566677  999999999999876


Q ss_pred             cCC------hhHHhHHHHHHHHccCcHHHHHHHHHHH---hccCCCh----HHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 023284          151 AKN------YHAWSYRQWVLQALGGWEDELDYCQMLL---GEDIFNN----SAWNQRYFVVTRSPLLGGLIAMRDSEVNF  217 (284)
Q Consensus       151 pkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l---~~dp~n~----sAW~~r~~ll~~l~~~~~~~~~~~~el~~  217 (284)
                      +++      ..+++..|.++...|++++|+.++++++   +..|.+.    .++++.|.++..++++       ++++++
T Consensus       146 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-------~~Al~~  218 (293)
T 2qfc_A          146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-------EESLYQ  218 (293)
T ss_dssp             CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH-------HHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH-------HHHHHH
Confidence            655      5689999999999999999999999999   5556543    6899999999999985       788899


Q ss_pred             HHHHHhcCCCC------ccHHHHHHHHHccCCccCCCChhh-HHHHHhhhh
Q 023284          218 TIEAILGNPEN------ESPWRYLRGLYKDDTESWINDPRM-LLSVFESFE  261 (284)
Q Consensus       218 ~~~~i~~~P~n------esaW~y~~~ll~~~~~~~~~~~~~-~~~~~~~~~  261 (284)
                      +++++.+.++.      ..+++.++.++...++    +..+ ...+.+++.
T Consensus       219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~----~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEY----EEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHH
Confidence            99988765432      3466666666666543    4555 444555544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.99  E-value=5.1e-10  Score=83.28  Aligned_cols=88  Identities=9%  Similarity=0.061  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhH
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHA  156 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~A  156 (284)
                      ..+|..++.++...| ++++++.++++++..+|.+..+|..++.++..+|+  +++++.+++++++++|.+      ..+
T Consensus         4 ~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--YTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            344555555555544 35555555555555555555555555555555555  555555555555555555      445


Q ss_pred             HhHHHHHHHHccCcHHH
Q 023284          157 WSYRQWVLQALGGWEDE  173 (284)
Q Consensus       157 W~~r~~vl~~l~~~~ee  173 (284)
                      +..++.++..+|.++++
T Consensus        81 ~~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHhHhhh
Confidence            55555555544444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.96  E-value=1.1e-08  Score=83.88  Aligned_cols=160  Identities=9%  Similarity=-0.063  Sum_probs=126.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHhCCCCH
Q 023284           63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK------SNSKNYQLWHHRRWVAEKLGTGAV  136 (284)
Q Consensus        63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~------~~pkn~~aW~hR~~ll~~l~~~~~  136 (284)
                      +..++|.+.+..+....+....++...+.+....| ++++++.++++++.      ..|....++...+.++...|+  +
T Consensus         6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~   82 (203)
T 3gw4_A            6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMD-RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--W   82 (203)
T ss_dssp             -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--H
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--H
Confidence            44467777555554433378899999999999999 69999999999998      556677889999999999999  9


Q ss_pred             HHHHHHHHHHHHh------Cc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC--h----HHHHHHHHHHhcCCC
Q 023284          137 NKELQFTKKMLSL------DA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN--N----SAWNQRYFVVTRSPL  203 (284)
Q Consensus       137 ~eel~~~~~aL~~------dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n--~----sAW~~r~~ll~~l~~  203 (284)
                      ++++.++.+++++      ++ ....++...+.++...|++++|+.++++++...+..  .    .++...+.+....++
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999999998      33 345678899999999999999999999999765332  2    234677778877887


Q ss_pred             CchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284          204 LGGLIAMRDSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       204 ~~~~~~~~~~el~~~~~~i~~~P~nesaW  232 (284)
                      +       +++++++.+++.+.......+
T Consensus       163 ~-------~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          163 L-------LEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             H-------HHHHHHHHHHHHHHHHTTCHH
T ss_pred             H-------HHHHHHHHHHHHHHHHcCCHH
Confidence            4       677888888887666555554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.96  E-value=5e-09  Score=93.68  Aligned_cols=139  Identities=8%  Similarity=-0.028  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-----
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPG------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-----  117 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-----  117 (284)
                      ..++...+.++...+..++|+.++.+++.+.++      -..++...+.++.. | ++++++.++++++.+.|+.     
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~  153 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQ  153 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhH
Confidence            345666677777788889999999999998543      24688888999888 7 6999999999999988765     


Q ss_pred             -hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284          118 -YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA  190 (284)
Q Consensus       118 -~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA  190 (284)
                       ..++...+.++..+|+  +++++.++++++++.|++.      .++...+.+...+|++++|+.++++++ ++|.+..+
T Consensus       154 ~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence             6788999999999999  9999999999999988764      367777888888899999999999999 99988765


Q ss_pred             HH
Q 023284          191 WN  192 (284)
Q Consensus       191 W~  192 (284)
                      ..
T Consensus       231 ~e  232 (307)
T 2ifu_A          231 ED  232 (307)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.94  E-value=4.7e-09  Score=77.92  Aligned_cols=86  Identities=12%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC------hHH
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN------NSA  190 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n------~sA  190 (284)
                      +..+|..+|.++...|+  +++++.+++++++++|.+..+|..++.++..+|++++|+++++++++++|.+      ..+
T Consensus         3 ~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGL--YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            56789999999999999  9999999999999999999999999999999999999999999999999999      788


Q ss_pred             HHHHHHHHhcCCCC
Q 023284          191 WNQRYFVVTRSPLL  204 (284)
Q Consensus       191 W~~r~~ll~~l~~~  204 (284)
                      +..++.++..++..
T Consensus        81 ~~~~~~~~~~~~~~   94 (111)
T 2l6j_A           81 QYRLELAQGAVGSV   94 (111)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhH
Confidence            88888877766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.93  E-value=6.7e-09  Score=74.40  Aligned_cols=80  Identities=21%  Similarity=0.266  Sum_probs=47.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      +..+|...+.++...|+  +++++.++.++++.+|.+..+|..++.++...+++++|+.++.++++++|.+..++..++.
T Consensus         8 ~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34555555555555555  6666666666666666666666666666666666666666666666666666666655555


Q ss_pred             HH
Q 023284          197 VV  198 (284)
Q Consensus       197 ll  198 (284)
                      ++
T Consensus        86 ~~   87 (91)
T 1na3_A           86 AK   87 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.92  E-value=2.7e-07  Score=87.35  Aligned_cols=180  Identities=11%  Similarity=0.004  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---hhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCCCHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIET---LHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK----LGTGAVNK  138 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~---l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~----l~~~~~~e  138 (284)
                      ++|+..+.+++..  .+..+++..+.++..   ...++++++.++++++..  .+..+++..+.++..    .++  +++
T Consensus       204 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d--~~~  277 (490)
T 2xm6_A          204 AISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKE--PLK  277 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCC--HHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCC--HHH
Confidence            4555555555543  234455555554443   112455555555555543  344555555555554    333  556


Q ss_pred             HHHHHHHHHHhCcCChhHHhHHHHHHHHc-----cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHH
Q 023284          139 ELQFTKKMLSLDAKNYHAWSYRQWVLQAL-----GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS  213 (284)
Q Consensus       139 el~~~~~aL~~dpkN~~AW~~r~~vl~~l-----~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~  213 (284)
                      ++.++.++++.  .+..+++..+.++...     +++++|+.++.++++.  .+..+++..+.++...+..    .-+++
T Consensus       278 A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~----~~~~~  349 (490)
T 2xm6_A          278 ALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSE----EEHKK  349 (490)
T ss_dssp             HHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCH----HHHHH
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCc----ccHHH
Confidence            66666665544  3455556666555554     4556666666666554  3445565555555443211    11355


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          214 EVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       214 el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      ++.++.++++.  ++..+|++++.++........+.+.++..+.++++
T Consensus       350 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  395 (490)
T 2xm6_A          350 AVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE  395 (490)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence            66666666554  45556666555555432222334455555555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.91  E-value=8.3e-08  Score=90.78  Aligned_cols=191  Identities=11%  Similarity=0.028  Sum_probs=140.9

Q ss_pred             HHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---hhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           51 TMSYFRAVYYSDE---RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL---HTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        51 a~~~~r~~~~~~~---~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l---~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      ++...+.++...+   ..++|+..+.+++..+|....+++..+.++...   ..++++++.++++++   |.+..+++..
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            5566666666555   557899999999999999999988888888543   147889999999988   8999999999


Q ss_pred             HHH-H--HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-----CcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          125 RWV-A--EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-----GWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       125 ~~l-l--~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-----~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      +.+ +  ...++  +++++.++.++++.+  +..|+++.|.++. .|     ++++|+.++.+++   +++..|+++.|.
T Consensus       255 g~~~~~~~~~~d--~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~  326 (452)
T 3e4b_A          255 AQLLYDFPELGD--VEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQ  326 (452)
T ss_dssp             HHHHHHSGGGCC--HHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHH
T ss_pred             HHHHHhCCCCCC--HHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence            988 4  33455  899999999988654  8889999998887 44     7889999999998   889999999998


Q ss_pred             HHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCCh-hhHHHHHh
Q 023284          197 VVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDP-RMLLSVFE  258 (284)
Q Consensus       197 ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~-~~~~~~~~  258 (284)
                      ++..-....   .-+++++.++.++.+  +++..+.+.++.++... ..+..++ .+..-+..
T Consensus       327 ~y~~G~g~~---~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G-~g~~~d~~~A~~~~~~  383 (452)
T 3e4b_A          327 IYRRGYLGK---VYPQKALDHLLTAAR--NGQNSADFAIAQLFSQG-KGTKPDPLNAYVFSQL  383 (452)
T ss_dssp             HHHTTTTSS---CCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSC-TTBCCCHHHHHHHHHH
T ss_pred             HHHCCCCCC---cCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHH
Confidence            776521110   114778889988864  67777887766666544 3444443 33333333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.90  E-value=4.6e-09  Score=77.13  Aligned_cols=91  Identities=11%  Similarity=0.061  Sum_probs=67.8

Q ss_pred             HHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284           88 FRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ-LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA  166 (284)
Q Consensus        88 ~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~-aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~  166 (284)
                      .++.++...| ++++++..+++++..+|.+.. +|..+|.++..+|+  +++++.++.++++++|.+..+|.+       
T Consensus         5 ~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~-------   74 (99)
T 2kc7_A            5 KTIKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD--WQKALNNYQSAIELNPDSPALQAR-------   74 (99)
T ss_dssp             HHHHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence            4556666666 577888888888888888887 88888888888877  888888888888888888777755       


Q ss_pred             ccCcHHHHHHHHHHHhccCCChH
Q 023284          167 LGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       167 l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                       +.+.+++.++.+++..+|++.+
T Consensus        75 -~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 -KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             -HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             -HHHHHHHHHHHHHhccCccccc
Confidence             3456677777777777776643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.89  E-value=2.9e-08  Score=71.00  Aligned_cols=85  Identities=16%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284           81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR  160 (284)
Q Consensus        81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r  160 (284)
                      .+..+|+..+.++...+ ++++++.++++++..+|.+..+|...+.++...|+  +++++.++.++++++|.+..++...
T Consensus         7 ~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            45678888888888888 58888888888888888888888888888888888  8888888888888888888888888


Q ss_pred             HHHHHHcc
Q 023284          161 QWVLQALG  168 (284)
Q Consensus       161 ~~vl~~l~  168 (284)
                      +.++...|
T Consensus        84 ~~~~~~~g   91 (91)
T 1na3_A           84 GNAKQKQG   91 (91)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            88776543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.88  E-value=5.9e-07  Score=84.99  Aligned_cols=175  Identities=7%  Similarity=-0.047  Sum_probs=116.3

Q ss_pred             hhHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hhhCHHHHHHHHHHHHHhCCCC
Q 023284           46 PEFSETMSYFRAVYYS----DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET----LHTDLQDELAFVGRIAKSNSKN  117 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~----~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~----l~~~~~~eL~~~~~~l~~~pkn  117 (284)
                      +.+.++....+.++..    .+..++|+..+.+++..  .+..+++..+.+...    .+ ++++++.++.+++..  .+
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~--~~  110 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALK--GL  110 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TC
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CC
Confidence            3445666666666655    34447788888888775  567788888877776    44 678888888887764  47


Q ss_pred             hHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChH
Q 023284          118 YQLWHHRRWVAEK----LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       118 ~~aW~hR~~ll~~----l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      ..+++..+.++..    .++  +++++..+.++++.  .+..++...+.++..    .+++++|++++.++++.  .+..
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~--~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~  184 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVD--KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVW  184 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCC--HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            7777777777766    445  77888888887665  467777777777766    56677888888887775  5677


Q ss_pred             HHHHHHHHHhc----CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          190 AWNQRYFVVTR----SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       190 AW~~r~~ll~~----l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                      +++..+.++..    .+.       +++++.++.+++..  ++..+++.+..++.
T Consensus       185 a~~~Lg~~y~~g~g~~~~-------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~  230 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERN-------DAISAQWYRKSATS--GDELGQLHLADMYY  230 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCC-------HHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCcC-------HHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            77777777654    222       24555666665543  34445544444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.88  E-value=7.1e-09  Score=77.34  Aligned_cols=75  Identities=8%  Similarity=0.002  Sum_probs=55.4

Q ss_pred             hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          113 SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       113 ~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      .+|++..+|+..|.++...|+  +++++.+++++++++|.+..+|..+|.++..+|++++|++++++++++.|.+..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDN--ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            467777777777777777777  777777777777777777777777777777777777778777777777665433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.84  E-value=1.1e-08  Score=74.99  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh-HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH-AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~-AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      ..++.++...|+  +++++..++++++.+|.+.. +|..+|.++..+|++++|+++++++++++|.+..+|.+.      
T Consensus         4 ~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~------   75 (99)
T 2kc7_A            4 LKTIKELINQGD--IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK------   75 (99)
T ss_dssp             HHHHHHHHHHTC--HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH------
T ss_pred             HHHHHHHHHcCC--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH------
Confidence            356778888898  99999999999999999999 999999999999999999999999999999999998651      


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          201 SPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       201 l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                               .+.+++.++.+++..+|++.+
T Consensus        76 ---------~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           76 ---------MVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             ---------HHHHHHHHHCCTTHHHHCCSS
T ss_pred             ---------HHHHHHHHHHHHhccCccccc
Confidence                     135677888888888888754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.84  E-value=5e-08  Score=75.84  Aligned_cols=135  Identities=9%  Similarity=-0.003  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-----
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY------TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-----  117 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~------~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-----  117 (284)
                      ..++...+.++...+..++|+..+.+++.+.++..      .++...+.++...| ++++++.++++++...++.     
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcHH
Confidence            45667777777777788899999999998876543      47888888888888 5899999999998876654     


Q ss_pred             -hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          118 -YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       118 -~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                       ..++...+.++...|+  +++++.++.+++++.++.      ..++...+.++...|++++|++++++++++..+
T Consensus        88 ~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence             6678888889889988  999999999998874332      456777888888899999999999998887544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.83  E-value=1.7e-07  Score=88.63  Aligned_cols=198  Identities=10%  Similarity=-0.015  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCCChHHH
Q 023284           48 FSETMSYFRAVYYSDERS----SRSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        48 ~~~a~~~~r~~~~~~~~s----~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +..++...+.++..++..    +++..++..+...+|.   +++..+.++...|  .++++++.++.+++...|....++
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~  216 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV  216 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence            344555555655555433    3455566666666666   9999999998876  148899999999999999999999


Q ss_pred             HHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH-H--HHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284          122 HHRRWVAEKL----GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-L--QALGGWEDELDYCQMLLGEDIFNNSAWNQR  194 (284)
Q Consensus       122 ~hR~~ll~~l----~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v-l--~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r  194 (284)
                      +..+.++...    ++  +++++.++.++.   |.+..++++.+.+ +  ...+++++|+.++.++++.  ++..|+++.
T Consensus       217 ~~Lg~~y~~g~~~~~d--~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~L  289 (452)
T 3e4b_A          217 DSVARVLGDATLGTPD--EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLL  289 (452)
T ss_dssp             HHHHHHHTCGGGSSCC--HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCC--HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            9999988654    34  899999999998   9999999999998 5  4578899999999999964  589999999


Q ss_pred             HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCC-CChhhHHHHHhhhhc
Q 023284          195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWI-NDPRMLLSVFESFEY  262 (284)
Q Consensus       195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~-~~~~~~~~~~~~~~~  262 (284)
                      |.++..-...   ..-+++++.++.+++   |++..+.+.++.++... .... +...++..+.++.+.
T Consensus       290 g~~y~~G~g~---~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G-~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          290 GKLYYEGKWV---PADAKAAEAHFEKAV---GREVAADYYLGQIYRRG-YLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             HHHHHHCSSS---CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT-TTSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCC---CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC-CCCCcCHHHHHHHHHHHHhh
Confidence            9988742111   011578999999997   99999998888777763 3343 344666666666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.82  E-value=3.6e-08  Score=87.11  Aligned_cols=127  Identities=9%  Similarity=-0.070  Sum_probs=106.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh-------CCCChHHH
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETLHTDLQDELAFVGRIAKS-------NSKNYQLW  121 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~-------~pkn~~aW  121 (284)
                      .+.+....+..++|+..+.+++.+.+..      ..+++..|.+...+| ++++++.++++++..       .+....++
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            4445555566799999999999975543      347899999999999 699999999999952       23344689


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccC-cHHHHHHHHHHHhcc
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGG-WEDELDYCQMLLGED  184 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~-~~eeL~~~~~~l~~d  184 (284)
                      ++.|.++..+|+  +++|+.++++++++.+++      ..+++++|.+...+|. +++|++++++++.+.
T Consensus       200 ~nlg~~y~~~~~--y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          200 YNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            999999999999  999999999999988766      6799999999999995 699999999999864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.80  E-value=1.2e-07  Score=85.82  Aligned_cols=166  Identities=11%  Similarity=-0.044  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh------
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT-----VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY------  118 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~-----aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~------  118 (284)
                      .+...++.+....+..++|+..+++++...|.+..     +++..+.++...| ++++++..+++++...|+..      
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            44555566666677789999999999999886642     6778888888888 69999999999998766543      


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc--------CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC---
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA--------KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN---  187 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp--------kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n---  187 (284)
                      .+..+.+.++...|+  +++++..+.+++++.+        ....++...+.++...|++++|+.++.+++...+..   
T Consensus        94 ~~~~~la~~~~~~G~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  171 (373)
T 1hz4_A           94 WSLIQQSEILFAQGF--LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  171 (373)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence            235678889999999  9999999999999763        345677788999999999999999999999988763   


Q ss_pred             --hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC
Q 023284          188 --NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN  225 (284)
Q Consensus       188 --~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~  225 (284)
                        ..++...+.+....|++       ++++.++.+++.+.
T Consensus       172 ~~~~~~~~la~~~~~~g~~-------~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDL-------DNARSQLNRLENLL  204 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHH
Confidence              34677777777777774       67888888887763

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.78  E-value=7.3e-08  Score=74.92  Aligned_cols=135  Identities=13%  Similarity=-0.029  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY------QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---  153 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~------~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---  153 (284)
                      ..++...+.++...| ++++++.++++++...++..      .++...+.++...|+  +++++.++++++++.++.   
T Consensus         9 ~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--FETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCc
Confidence            457788888888888 69999999999998876543      488889999999999  999999999999987664   


Q ss_pred             ---hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284          154 ---YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG  224 (284)
Q Consensus       154 ---~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~  224 (284)
                         ..++...+.++...|++++|+++++++++..+..      ..++...+.+....+.+       +++++++.+++.+
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~  158 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH-------DQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHH
Confidence               6688899999999999999999999999875432      34566667777667763       7788888888876


Q ss_pred             CCC
Q 023284          225 NPE  227 (284)
Q Consensus       225 ~P~  227 (284)
                      ...
T Consensus       159 ~~~  161 (164)
T 3ro3_A          159 SRE  161 (164)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.77  E-value=3.8e-08  Score=73.30  Aligned_cols=77  Identities=9%  Similarity=0.044  Sum_probs=68.2

Q ss_pred             hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284           78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus        78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      .+|++..+|+.++.++...| ++++++.++++++..+|.+..+|..++.++..+|+  +++++..+++++++.|++....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDR--TDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCHH
T ss_pred             CCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhhcCCchh
Confidence            58999999999999999999 69999999999999999999999999999999999  9999999999999987654433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.76  E-value=1.1e-07  Score=77.89  Aligned_cols=141  Identities=9%  Similarity=-0.152  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh---CC--
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAIC------LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS---NS--  115 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~------lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~---~p--  115 (284)
                      ....++...+.+....+..++|+..+.+++.      ..|....++...+.+....| ++++++.++++++..   .+  
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~  102 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG-NWDAARRCFLEERELLASLPED  102 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCcc
Confidence            4567788888888888888999999999999      66677889999999999999 699999999999988   44  


Q ss_pred             --CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          116 --KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       116 --kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                        ....++...+.++..+|+  +++++.++.+++++.++..      .++...+.+....|++++|++++.+++++....
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          103 PLAASANAYEVATVALHFGD--LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence              335678889999999999  9999999999997644322      235788899999999999999999999886554


Q ss_pred             hHH
Q 023284          188 NSA  190 (284)
Q Consensus       188 ~sA  190 (284)
                      ...
T Consensus       181 ~~~  183 (203)
T 3gw4_A          181 EDS  183 (203)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.60  E-value=3.3e-06  Score=89.37  Aligned_cols=175  Identities=9%  Similarity=0.024  Sum_probs=133.0

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC----------
Q 023284           47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK----------  116 (284)
Q Consensus        47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk----------  116 (284)
                      +...+|..++..+.+.++..+|+++|.++     ++..+|...+.++..+| +++++++++..+....+.          
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lG-kyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSG-NWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcccccccHHHHHH
Confidence            44778888888888888889999999775     88889999999999999 588999988776655433          


Q ss_pred             -----------------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHH
Q 023284          117 -----------------NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQM  179 (284)
Q Consensus       117 -----------------n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~  179 (284)
                                       +...|...|..+...|.  +++|+.+|.++        ..|...+.++.++|.+++|++++.+
T Consensus      1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~--YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A         1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM--YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred             HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC--HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                             33456666666667777  88888888886        5788888899999999999999998


Q ss_pred             HHhccCCChHHHHHHHHHHhcCCCC-----------------ch------hhhhHHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284          180 LLGEDIFNNSAWNQRYFVVTRSPLL-----------------GG------LIAMRDSEVNFTIEAILGNPENESPWRYLR  236 (284)
Q Consensus       180 ~l~~dp~n~sAW~~r~~ll~~l~~~-----------------~~------~~~~~~~el~~~~~~i~~~P~nesaW~y~~  236 (284)
                      +     .|..+|..-+++.-..+.+                 .+      ....++++|..++++|.++|.+...|..++
T Consensus      1247 A-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A         1247 A-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred             h-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence            8     5567887555443211110                 00      012268899999999999999999998888


Q ss_pred             HHHccC
Q 023284          237 GLYKDD  242 (284)
Q Consensus       237 ~ll~~~  242 (284)
                      .++.+.
T Consensus      1322 iLyaKy 1327 (1630)
T 1xi4_A         1322 ILYSKF 1327 (1630)
T ss_pred             HHHHhC
Confidence            887775

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.57  E-value=5.7e-06  Score=74.62  Aligned_cols=165  Identities=12%  Similarity=0.038  Sum_probs=125.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-----hH
Q 023284           53 SYFRAVYYSDERSSRSFQLTKEAICLN--------PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-----YQ  119 (284)
Q Consensus        53 ~~~r~~~~~~~~s~~aL~~~~~~L~ln--------P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-----~~  119 (284)
                      ...+.+....+..++|+..+++++.+.        |....++...+.++...| ++++++.++++++...|+.     ..
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            344555666777799999999999876        456678888999999999 6999999999999988763     46


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--ChhHHhH-----HHHHHHHccCcHHHHHHHHHHHhccCCCh----
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK--NYHAWSY-----RQWVLQALGGWEDELDYCQMLLGEDIFNN----  188 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk--N~~AW~~-----r~~vl~~l~~~~eeL~~~~~~l~~dp~n~----  188 (284)
                      ++...+.+....|+  +++++..+++++.+.+.  +...|..     ++.+....|+++++...+.+++...|.+.    
T Consensus       176 ~~~~la~~~~~~g~--~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          176 CLAMLIQCSLARGD--LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            78888999999999  99999999999987433  2223332     33456788999999999999999887642    


Q ss_pred             HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284          189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE  227 (284)
Q Consensus       189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~  227 (284)
                      .++...+.++...+++       +++++.+.+++...+.
T Consensus       254 ~~~~~la~~~~~~g~~-------~~A~~~l~~a~~~~~~  285 (373)
T 1hz4_A          254 GQWRNIARAQILLGEF-------EPAEIVLEELNENARS  285 (373)
T ss_dssp             HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHh
Confidence            2456667777777774       5667777777665443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.56  E-value=1.7e-06  Score=86.43  Aligned_cols=187  Identities=5%  Similarity=-0.124  Sum_probs=135.1

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh-------
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSF-QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS-------  113 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL-~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~-------  113 (284)
                      |...|.+.+.|..+.......+..++|. +++++++..+|++...|.....+....| +++++-..+++++..       
T Consensus       336 L~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~-~~e~aR~iyek~l~~l~~~~~~  414 (679)
T 4e6h_A          336 AQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT-KIPEIETTILSCIDRIHLDLAA  414 (679)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhhh
Confidence            4567778888888877776665556786 8889999999988888888888888877 588888888888864       


Q ss_pred             ----CCC-----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CcCChhHHhHHHHHHHHccC-cHHHHHH
Q 023284          114 ----NSK-----------NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL-DAKNYHAWSYRQWVLQALGG-WEDELDY  176 (284)
Q Consensus       114 ----~pk-----------n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~-dpkN~~AW~~r~~vl~~l~~-~~eeL~~  176 (284)
                          .|.           +..+|.....+..+.|.  .+.+...+.+|++. .+...+.|...+.+-.+.+. .+.|...
T Consensus       415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~i  492 (679)
T 4e6h_A          415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV  492 (679)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred             hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence                253           34578887777777777  88888889998887 55567777766665555554 7888999


Q ss_pred             HHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC---CccHHHHHHHH
Q 023284          177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE---NESPWRYLRGL  238 (284)
Q Consensus       177 ~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~---nesaW~y~~~l  238 (284)
                      ++++|+..|.+...|.....++...+..       +.+-..+++++...|+   ....|....-.
T Consensus       493 fe~~Lk~~p~~~~~w~~y~~fe~~~~~~-------~~AR~lferal~~~~~~~~~~~lw~~~~~f  550 (679)
T 4e6h_A          493 LELGLKYFATDGEYINKYLDFLIYVNEE-------SQVKSLFESSIDKISDSHLLKMIFQKVIFF  550 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999998888885554444444442       4455666777777763   34466554433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.55  E-value=1.9e-06  Score=78.12  Aligned_cols=173  Identities=6%  Similarity=0.014  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC------CChHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNP--GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS------KNYQL  120 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP--~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p------kn~~a  120 (284)
                      ..+..+.+.++...+..++|++.+.++|..+|  .+..+......++..+| +.+.|.+.++++...+|      .....
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~-r~d~A~k~l~~~~~~~~d~~~~~d~~l~  178 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN-NVSTASTIFDNYTNAIEDTVSGDNEMIL  178 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCccccccchHHHH
Confidence            44455777777778888999999999999997  89999999999999999 49999999999999999      34444


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--ChhHHhHHHHHHHHccCcHHHHHHHHHHHhc----------cCCCh
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK--NYHAWSYRQWVLQALGGWEDELDYCQMLLGE----------DIFNN  188 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk--N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~----------dp~n~  188 (284)
                      ..--+|+....|.+.+.+++.+|+.+++..|.  .......   +..++|++++|.+.++.+++.          +|+|.
T Consensus       179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~  255 (310)
T 3mv2_B          179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP  255 (310)
T ss_dssp             HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence            44457777777744499999999999998886  3333333   788899999999999988887          58899


Q ss_pred             HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284          189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY  234 (284)
Q Consensus       189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y  234 (284)
                      .+..+...+-..+|.         ++.+++.++...+|+|+-+-.+
T Consensus       256 ~~LaN~i~l~~~lgk---------~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          256 TFLANQITLALMQGL---------DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             HHHHHHHHHHHHTTC---------TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCh---------HHHHHHHHHHHhCCCChHHHHH
Confidence            999887666555664         2356788999999999765433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.45  E-value=4.2e-06  Score=77.47  Aligned_cols=120  Identities=13%  Similarity=0.034  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT----------DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA  135 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~----------~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~  135 (284)
                      .+|+.+++++|+++|++..+|..+..+...+..          .+..++.- ..++..+|.+..++.-.+.++...|+  
T Consensus       216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd--  292 (372)
T 3ly7_A          216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGK--  292 (372)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCC--
Confidence            689999999999999999999988776543210          01222221 12346778888887777666666788  


Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS  189 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s  189 (284)
                      +++++..+++++.++| +..+|.-.|++....|++++|++.+++++.++|....
T Consensus       293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            9999999999999996 5778889999999999999999999999999999874

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.44  E-value=1e-05  Score=80.81  Aligned_cols=180  Identities=4%  Similarity=-0.125  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHH-HHHHHHHHhCCCChHH
Q 023284           49 SETMSYFRAVYYSDER-------SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDEL-AFVGRIAKSNSKNYQL  120 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~-------s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL-~~~~~~l~~~pkn~~a  120 (284)
                      ...|..+-..-.....       ..+...+|+++|..+|.++.+|..-...+...| +.+++. +.+++++...|++...
T Consensus       302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~-~~~~a~r~il~rAi~~~P~s~~L  380 (679)
T 4e6h_A          302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN-TDSTVITKYLKLGQQCIPNSAVL  380 (679)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS-CCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhCCCCHHH
Confidence            4556555444333321       135678999999999999999999999988887 467887 9999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-----------cC-----------ChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLD-----------AK-----------NYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~d-----------pk-----------N~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      |.....+....|+  ++++.+.++++++.-           |.           +..+|.....+..+.+..+.|...+.
T Consensus       381 wl~~a~~ee~~~~--~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~  458 (679)
T 4e6h_A          381 AFSLSEQYELNTK--IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG  458 (679)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999998  999999999999752           43           34579888888888899999999999


Q ss_pred             HHHhc-cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH-HHHHH
Q 023284          179 MLLGE-DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW-RYLRG  237 (284)
Q Consensus       179 ~~l~~-dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW-~y~~~  237 (284)
                      ++++. .+.....|...+.+-...++-      .+++...+..+|+..|++...| .|+..
T Consensus       459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d------~e~Ar~ife~~Lk~~p~~~~~w~~y~~f  513 (679)
T 4e6h_A          459 KCRRLKKLVTPDIYLENAYIEYHISKD------TKTACKVLELGLKYFATDGEYINKYLDF  513 (679)
T ss_dssp             HHHHTGGGSCTHHHHHHHHHHHTTTSC------CHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            99998 445566777666555555431      2567778889999999999988 45543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.39  E-value=5.4e-06  Score=76.74  Aligned_cols=155  Identities=8%  Similarity=-0.040  Sum_probs=110.5

Q ss_pred             HHHHhCCCcHHHHHH--HHHHHHHhh--hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---CCCC------HHHHH
Q 023284           74 EAICLNPGNYTVWHF--RRQIIETLH--TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL---GTGA------VNKEL  140 (284)
Q Consensus        74 ~~L~lnP~~~~aW~~--R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l---~~~~------~~eel  140 (284)
                      .+...-|.+.+||-.  |+.-+...+  ....+++.+++++++++|.+..+|..+.++...+   +...      ...++
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            455667888777764  444333322  2468999999999999999999999887766422   2100      11222


Q ss_pred             HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284          141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE  220 (284)
Q Consensus       141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~  220 (284)
                      .- ..++..+|.+..++.-.+.+....|++++|+..+++++.++| +..+|..+|.++.-.|+.       +++++.+.+
T Consensus       265 ~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~-------~eA~e~~~~  335 (372)
T 3ly7_A          265 DN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMN-------REAADAYLT  335 (372)
T ss_dssp             HH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCH-------HHHHHHHHH
T ss_pred             HH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCH-------HHHHHHHHH
Confidence            21 123356777777766666666667999999999999999997 467788889888888874       789999999


Q ss_pred             HHhcCCCCccHHHHHHHH
Q 023284          221 AILGNPENESPWRYLRGL  238 (284)
Q Consensus       221 ~i~~~P~nesaW~y~~~l  238 (284)
                      ++.++|..+ .+....++
T Consensus       336 AlrL~P~~~-t~~~~~~l  352 (372)
T 3ly7_A          336 AFNLRPGAN-TLYWIENG  352 (372)
T ss_dssp             HHHHSCSHH-HHHHHHHS
T ss_pred             HHhcCCCcC-hHHHHhCc
Confidence            999999986 44444444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.26  E-value=7e-06  Score=75.25  Aligned_cols=190  Identities=11%  Similarity=-0.045  Sum_probs=131.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           62 DERSSRSFQLTKEAICLNPGNY-----------------TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~-----------------~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      .+..++|++.+..++...|+..                 .+....+.++...| +++++++++.+++...++...+-..+
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG-AKDKLREFIPHSTEYMMQFAKSKTVK   95 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccchHHHH
Confidence            3455899999999999999764                 35778888888888 69999999999998877765543322


Q ss_pred             ------HHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHhc------cCC
Q 023284          125 ------RWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLGE------DIF  186 (284)
Q Consensus       125 ------~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~------dp~  186 (284)
                            +.+....|.  ++.++.++.+++...++.      ..++...+.++...|++++|+.++.+++..      .+.
T Consensus        96 ~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~  173 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDS--LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS  173 (434)
T ss_dssp             HHHHHHHHHCSCCSC--HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred             HHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence                  223233355  899999999999865544      357778899999999999999999998876      333


Q ss_pred             ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH---HHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY---LRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y---~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      ...++...+.+...++.+       +++..++++++.+.+........   ....+...-....++..+...+.++++
T Consensus       174 ~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          174 LVDVHLLESKVYHKLRNL-------AKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcH-------HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            446777888888888875       66777777777655433322111   111111122234556677776666654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.22  E-value=6.9e-07  Score=84.72  Aligned_cols=154  Identities=7%  Similarity=-0.012  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA  128 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll  128 (284)
                      +.+|...+....+.++.++|+++|.+     .+++.+|...+.....+| .+++++.++..+.+. .++..+..--..++
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfik-----a~D~~~y~~V~~~ae~~g-~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y  104 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSG-NWEELVKYLQMARKK-ARESYVETELIFAL  104 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHc-----CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHh-CccchhHHHHHHHH
Confidence            46899998888888888999999965     467888998888888888 589999988888874 44466666677777


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhh
Q 023284          129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLI  208 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~  208 (284)
                      .++|+  +.+..++++      +.|..+|...|..+...|+|++|..+|.++        +.|..++.++.++|.+    
T Consensus       105 ~Klg~--l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~y----  164 (449)
T 1b89_A          105 AKTNR--LAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY----  164 (449)
T ss_dssp             ----C--HHHHTTTTT------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCH----
T ss_pred             HHhCC--HHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccH----
Confidence            78888  777776664      235569999999999999999999999977        5788888888888884    


Q ss_pred             hhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284          209 AMRDSEVNFTIEAILGNPENESPWRYLRG  237 (284)
Q Consensus       209 ~~~~~el~~~~~~i~~~P~nesaW~y~~~  237 (284)
                         +++++++.++     ++..+|.-...
T Consensus       165 ---q~AVea~~KA-----~~~~~Wk~v~~  185 (449)
T 1b89_A          165 ---QAAVDGARKA-----NSTRTWKEVCF  185 (449)
T ss_dssp             ---HHHHHHHHHH-----TCHHHHHHHHH
T ss_pred             ---HHHHHHHHHc-----CCchhHHHHHH
Confidence               7788888887     45667755433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.19  E-value=4.3e-05  Score=81.04  Aligned_cols=109  Identities=17%  Similarity=0.250  Sum_probs=59.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 023284           56 RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA  135 (284)
Q Consensus        56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~  135 (284)
                      +.+....++.++|+.+|+++-    .+..|   ...++..++ .+++++++.+++     ....+|+..|..+...|+  
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~-nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~-- 1120 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIG-NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGM-- 1120 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHh-hHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC--
Confidence            344445566666666666642    11111   122233444 355555555544     445666666666666666  


Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      +.+|+++|.++     +|..+|...+.++.++|+|+++++++..+++..
T Consensus      1121 ~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1121 VKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             HHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            66666666443     555666666666666666666666666555554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.13  E-value=8.1e-05  Score=67.36  Aligned_cols=155  Identities=7%  Similarity=-0.106  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284           68 SFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS--KNYQLWHHRRWVAEKLGTGAVNKELQFTKK  145 (284)
Q Consensus        68 aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p--kn~~aW~hR~~ll~~l~~~~~~eel~~~~~  145 (284)
                      |+..+++.+...+....+....+.++...| +++++|+.+.+.|..+|  .+..+..-...++.++|+  .+.|.+.+.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g-~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--~d~A~k~l~~  161 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILG-DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--VSTASTIFDN  161 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence            677788888776677788889999999988 69999999999999997  889999999999999999  9999999999


Q ss_pred             HHHhCcC----ChhHHhHH--HHHHHHcc--CcHHHHHHHHHHHhccCCChH--HHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284          146 MLSLDAK----NYHAWSYR--QWVLQALG--GWEDELDYCQMLLGEDIFNNS--AWNQRYFVVTRSPLLGGLIAMRDSEV  215 (284)
Q Consensus       146 aL~~dpk----N~~AW~~r--~~vl~~l~--~~~eeL~~~~~~l~~dp~n~s--AW~~r~~ll~~l~~~~~~~~~~~~el  215 (284)
                      +.+.+|.    +-....+.  +|+-...|  .+++|+..++++.+..|...+  ....   +..++|++       +++-
T Consensus       162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~-------~eAe  231 (310)
T 3mv2_B          162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNI-------AEAQ  231 (310)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCH-------HHHH
T ss_pred             HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCH-------HHHH
Confidence            9999993    33344443  55555555  899999999999998887222  3222   55667774       5566


Q ss_pred             HHHHHHHhc----------CCCCccHHHHH
Q 023284          216 NFTIEAILG----------NPENESPWRYL  235 (284)
Q Consensus       216 ~~~~~~i~~----------~P~nesaW~y~  235 (284)
                      +.++.+++.          +|+|+.+-..+
T Consensus       232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~  261 (310)
T 3mv2_B          232 GIVELLLSDYYSVEQKENAVLYKPTFLANQ  261 (310)
T ss_dssp             HHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred             HHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence            666666665          48888876444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.02  E-value=4.9e-05  Score=61.66  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhC-c-CChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284          104 LAFVGRIAKSNSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLD-A-KNYHAWSYRQWVLQALGGWEDELDYCQML  180 (284)
Q Consensus       104 L~~~~~~l~~~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~d-p-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~  180 (284)
                      -+-+.+.+..+|.+.++.+.-+|.|-+.+. ...++.+.+++.+++.+ | ++-.++++.+....++++|++|+.+++++
T Consensus        18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            344555666788888888888888887652 11668999999999998 7 77899999999999999999999999999


Q ss_pred             HhccCCChHHHHHHHHHHh
Q 023284          181 LGEDIFNNSAWNQRYFVVT  199 (284)
Q Consensus       181 l~~dp~n~sAW~~r~~ll~  199 (284)
                      |+++|+|..|..-+..+-.
T Consensus        98 L~ieP~n~QA~~Lk~~ie~  116 (152)
T 1pc2_A           98 LQTEPQNNQAKELERLIDK  116 (152)
T ss_dssp             HHHCTTCHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHH
Confidence            9999999988877665543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.00  E-value=3.6e-05  Score=57.01  Aligned_cols=73  Identities=14%  Similarity=0.005  Sum_probs=49.5

Q ss_pred             CCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          114 NSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       114 ~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                      +|++..+|.-++.++...+. ....++...++++|++||+|..++...|.+....|+|++|+.+++++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            56666777777666644332 22466777777777777777777777777777777777777777777777776

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.97  E-value=1.2e-05  Score=76.08  Aligned_cols=169  Identities=9%  Similarity=0.069  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE  129 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~  129 (284)
                      .+|...+..+...+..++|..+|..+        ..|...+.++..+| ++++|++++.++     .+..+|.--..+..
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg-~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG-EYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTT-CHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhc-cHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            37888888888888888999999977        46888899999999 599999999988     47888988888888


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhh
Q 023284          130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIA  209 (284)
Q Consensus       130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~  209 (284)
                      ..|+  +..|..+... |..+|.+...   ...++.+.|.+++++.++++++.+++.+..+|...+.+..+..-     .
T Consensus       189 ~~~e--f~lA~~~~l~-L~~~ad~l~~---lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p-----~  257 (449)
T 1b89_A          189 DGKE--FRLAQMCGLH-IVVHADELEE---LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-----Q  257 (449)
T ss_dssp             HTTC--HHHHHHTTTT-TTTCHHHHHH---HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-----H
T ss_pred             HcCc--HHHHHHHHHH-HHhCHhhHHH---HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH-----H
Confidence            8888  8888777665 4477776442   44567899999999999999999999999999999888776531     1


Q ss_pred             hHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHccCC
Q 023284          210 MRDSEVNFTIEAILGNP-----ENESPWRYLRGLYKDDT  243 (284)
Q Consensus       210 ~~~~el~~~~~~i~~~P-----~nesaW~y~~~ll~~~~  243 (284)
                      -+.+.++.+-+.|.+.|     .+...|.-+..++...+
T Consensus       258 k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~  296 (449)
T 1b89_A          258 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE  296 (449)
T ss_dssp             HHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            13556677777777777     77788888877776553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.96  E-value=0.00027  Score=55.49  Aligned_cols=114  Identities=11%  Similarity=-0.014  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCCCHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK----LGTGAVNKELQ  141 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~----l~~~~~~eel~  141 (284)
                      ++|+..+.++...+.....    .+.++...+ ..+++++++++++..  .+..+.+..+.++..    .++  +.+++.
T Consensus        12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~-~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d--~~~A~~   82 (138)
T 1klx_A           12 KKAIQYYVKACELNEMFGC----LSLVSNSQI-NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD--LRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHTTCTTHH----HHHHTCTTS-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC--HHHHHH
T ss_pred             HHHHHHHHHHHcCCCHhhh----HHHHHHcCC-CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc--HHHHHH
Confidence            6899999999988755554    565555433 578899999999987  788999999999887    455  999999


Q ss_pred             HHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          142 FTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       142 ~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      ++.++.+.  .+..+.++.+.++..    .+++++|+.++.++++.  .+..|..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~  133 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACG  133 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHH
Confidence            99999987  789999999999988    78899999999999987  4444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.94  E-value=7.2e-05  Score=55.33  Aligned_cols=72  Identities=8%  Similarity=-0.103  Sum_probs=44.3

Q ss_pred             CCCcHHHHHHHHHHHHHhhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284           79 NPGNYTVWHFRRQIIETLHT--DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK  152 (284)
Q Consensus        79 nP~~~~aW~~R~~~L~~l~~--~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk  152 (284)
                      +|++..+|..++.++...+.  ...++...++++|..+|++..++...|.+....|+  +.+++..+.++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~--y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR--FQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence            46666666666666643331  13566666666666666666666666666666666  66666666666666666

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.89  E-value=0.00022  Score=55.96  Aligned_cols=113  Identities=11%  Similarity=-0.020  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDEL  174 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL  174 (284)
                      ++++++.++.++.........    .+.++..-+.  .++++.++.++.+.  .+..+.++.+.++..    .+++++|+
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~--~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQIN--KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSC--HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCC--HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            578999999999998755554    6666655555  88899999999987  788999999999988    77899999


Q ss_pred             HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284          175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG  224 (284)
Q Consensus       175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~  224 (284)
                      +++.++++.  .+..|.++.+.+...-....   .-+++++.++.++.+.
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~---~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVV---KNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSC---CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCC---cCHHHHHHHHHHHHHC
Confidence            999999987  78999999998887621110   0147889999999876

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.85  E-value=5.5e-05  Score=69.17  Aligned_cols=169  Identities=6%  Similarity=-0.042  Sum_probs=120.8

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHH------HHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWH------FRRQIIETLHTDLQDELAFVGRIAKSNSKN-  117 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~------~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-  117 (284)
                      .+....+....+.++.+.+..++|++++..++.+.+....+-.      ..+.+....| .++.++.++..++...++. 
T Consensus        51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~  129 (434)
T 4b4t_Q           51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREK  129 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSS
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC
Confidence            3455678888889998888889999999999987766543322      2222222234 5889999999988754333 


Q ss_pred             -----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284          118 -----YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL------DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       118 -----~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~  186 (284)
                           ..++...+.++...|+  +.+++.++.+++..      .+....++...+.++..+|++++|..++++++...+.
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          130 RVFLKHSLSIKLATLHYQKKQ--YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccC--hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence                 4677888999999999  99999999999875      3334568888899999999999999999999988655


Q ss_pred             ChHHHH-------HHHHHHhcCCCCchhhhhHHHHHHHHHHHHh
Q 023284          187 NNSAWN-------QRYFVVTRSPLLGGLIAMRDSEVNFTIEAIL  223 (284)
Q Consensus       187 n~sAW~-------~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~  223 (284)
                      ......       ..|.+....+.       ++++..++.+++.
T Consensus       208 ~~~~~~~~~~~~~~~g~~~~~~~~-------y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          208 IYCPTQTVAELDLMSGILHCEDKD-------YKTAFSYFFESFE  244 (434)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSSC-------HHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHH
Confidence            433322       22333333333       3556666666654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.72  E-value=0.00048  Score=55.81  Aligned_cols=98  Identities=8%  Similarity=0.053  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284           67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSN-S-KNYQLWHHRRWVAEKLGTGAVNKELQF  142 (284)
Q Consensus        67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~-p-kn~~aW~hR~~ll~~l~~~~~~eel~~  142 (284)
                      .+-+.|...+..+|.+.++.+.-+++|.+..  .+.++.+.+++.++..+ | ++-.++++.+....++++  +.+++.+
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~--Y~~A~~y   93 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--YEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC--HHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC--HHHHHHH
Confidence            4455666777788999999999999998855  24679999999999999 7 678999999999999999  9999999


Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQA  166 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~  166 (284)
                      ++++|+++|.|..|-.-+..+-.+
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLIDKA  117 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH
Confidence            999999999999998877666544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.71  E-value=0.00036  Score=62.44  Aligned_cols=110  Identities=7%  Similarity=-0.073  Sum_probs=84.1

Q ss_pred             HHhCCCcHHHHHHHHHHHHHh-h---------hCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHh-----CCCCHHH
Q 023284           76 ICLNPGNYTVWHFRRQIIETL-H---------TDLQDELAFVGRIAKSNSK--NYQLWHHRRWVAEKL-----GTGAVNK  138 (284)
Q Consensus        76 L~lnP~~~~aW~~R~~~L~~l-~---------~~~~~eL~~~~~~l~~~pk--n~~aW~hR~~ll~~l-----~~~~~~e  138 (284)
                      -..+|++..++++.+.+.... +         .....+...++++++++|+  +-.+|...|.++..+     |.  .++
T Consensus       145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd--~ek  222 (301)
T 3u64_A          145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG--MEK  222 (301)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC--HHH
T ss_pred             HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC--HHH
Confidence            345677778888877776542 1         1256788888888888888  555888888888885     66  888


Q ss_pred             HHHHHHHHHHhCcC-ChhHHhHHHHHHHH-ccCcHHHHHHHHHHHhccCCC
Q 023284          139 ELQFTKKMLSLDAK-NYHAWSYRQWVLQA-LGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       139 el~~~~~aL~~dpk-N~~AW~~r~~vl~~-l~~~~eeL~~~~~~l~~dp~n  187 (284)
                      +..+++++|+++|. |..+.+.-+..+.. .++++++..++++++..+|+.
T Consensus       223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            88888888888885 48888888777765 488888888888888888873

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.62  E-value=0.00074  Score=60.44  Aligned_cols=113  Identities=11%  Similarity=-0.042  Sum_probs=91.2

Q ss_pred             HHHHhCCCChHHHHHHHHHHHHh-CC-----C---CHHHHHHHHHHHHHhCcC--ChhHHhHHHHHHHH-----ccCcHH
Q 023284          109 RIAKSNSKNYQLWHHRRWVAEKL-GT-----G---AVNKELQFTKKMLSLDAK--NYHAWSYRQWVLQA-----LGGWED  172 (284)
Q Consensus       109 ~~l~~~pkn~~aW~hR~~ll~~l-~~-----~---~~~eel~~~~~aL~~dpk--N~~AW~~r~~vl~~-----l~~~~e  172 (284)
                      .+-..+|++..+++..+.+.... +.     .   ....+....++++++||+  +-.||...|.+...     .|+.++
T Consensus       143 ~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ek  222 (301)
T 3u64_A          143 VLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEK  222 (301)
T ss_dssp             HHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred             HHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence            34467899999988888777542 21     1   267788999999999999  67799999999998     489999


Q ss_pred             HHHHHHHHHhccCCC-hHHHHHHHHHHhcC-CCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284          173 ELDYCQMLLGEDIFN-NSAWNQRYFVVTRS-PLLGGLIAMRDSEVNFTIEAILGNPEN  228 (284)
Q Consensus       173 eL~~~~~~l~~dp~n-~sAW~~r~~ll~~l-~~~~~~~~~~~~el~~~~~~i~~~P~n  228 (284)
                      |.++++++|+++|+. ..+.++.+..+... ++       .+++..+++++|..+|..
T Consensus       223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-------~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-------RAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-------HHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-------HHHHHHHHHHHHcCCCCC
Confidence            999999999999974 89988888766553 55       366788999999988884

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.47  E-value=0.0013  Score=48.87  Aligned_cols=72  Identities=14%  Similarity=0.061  Sum_probs=46.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhC-------cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLD-------AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY  195 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~d-------pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~  195 (284)
                      .-|..+...+.  +..++..+..+++..       +.....+.+.+.++.++|++++|+..++++++.+|.+..+.++++
T Consensus        10 ~lG~~~~~~~~--y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           10 ELGKVAYTEAD--YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHTTC--HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHccc--hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            34555555555  666666666666542       234456666777777777777777777777777777777766665


Q ss_pred             H
Q 023284          196 F  196 (284)
Q Consensus       196 ~  196 (284)
                      .
T Consensus        88 ~   88 (104)
T 2v5f_A           88 Y   88 (104)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.35  E-value=0.0083  Score=57.25  Aligned_cols=134  Identities=10%  Similarity=-0.042  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----------------
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA-----------------  128 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll-----------------  128 (284)
                      .++..+++++|..+|....+|..-...+...| +.+++...+++++.. |++...|..-+...                 
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~  273 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-QKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence            35778999999999999999999888888877 689999999999999 99998886543321                 


Q ss_pred             -----------------------HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-CcHHHHHHHHHHHhcc
Q 023284          129 -----------------------EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDELDYCQMLLGED  184 (284)
Q Consensus       129 -----------------------~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-~~~eeL~~~~~~l~~d  184 (284)
                                             .+.+.  .+.+...++++ ...+..++.|...+.+-..++ +.+.|...++++++..
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~--~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~  350 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRG--LELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH  350 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCC--HHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence                                   01222  56677788888 444457788877666655566 5899999999999999


Q ss_pred             CCChHHHHHHHHHHhcCCCC
Q 023284          185 IFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       185 p~n~sAW~~r~~ll~~l~~~  204 (284)
                      |++...|....-....++..
T Consensus       351 ~~~~~~~~~yid~e~~~~~~  370 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLLRIGDE  370 (493)
T ss_dssp             TTCHHHHHHHHHHHHHHTCH
T ss_pred             CCCHHHHHHHHHHHHHcCCH
Confidence            99887766544444444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.32  E-value=0.004  Score=46.20  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284           85 VWHFRRQIIETLHTDLQDELAFVGRIAKSN-------SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW  157 (284)
Q Consensus        85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-------pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW  157 (284)
                      -.+..|..+...+ ++..++.+++.++...       +....++.+-+.++.++|+  +++|+..++++++++|.+..+.
T Consensus         7 dc~~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~--~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            7 DCFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD--LDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHH
Confidence            3445567777766 5888888888887753       3456778888888888888  8888888888888888888887


Q ss_pred             hHHHHH
Q 023284          158 SYRQWV  163 (284)
Q Consensus       158 ~~r~~v  163 (284)
                      ++++++
T Consensus        84 ~n~~~~   89 (104)
T 2v5f_A           84 GNLKYF   89 (104)
T ss_dssp             HHHHHH
T ss_pred             hhHHHH
Confidence            776643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.18  E-value=0.0033  Score=60.22  Aligned_cols=124  Identities=10%  Similarity=0.033  Sum_probs=76.3

Q ss_pred             cCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--------CCCChHHHHHH
Q 023284           61 SDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--------NSKNYQLWHHR  124 (284)
Q Consensus        61 ~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--------~pkn~~aW~hR  124 (284)
                      ..++.++|+.++.++|.+        +|.-.++.+..+.++..+| ++++|+.+++++|.+        +|.-..+.++.
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ-AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            455667888888887764        2333466677777777777 577787777777763        23334456666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhC--------cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLD--------AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~d--------pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                      +.++...|+  +++|+.++.+++++-        |.-...-...+.+...++.+.+|...+.++.+..-.|
T Consensus       400 a~~~~~~G~--~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~  468 (490)
T 3n71_A          400 GLTNWHAGH--IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN  468 (490)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCC--HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            777777777  777777777777642        2222333344444555566666666666665444333

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.08  E-value=0.02  Score=54.53  Aligned_cols=165  Identities=6%  Similarity=-0.019  Sum_probs=114.9

Q ss_pred             cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----------------------------
Q 023284           44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIE-----------------------------   94 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~-----------------------------   94 (284)
                      ..|.+..+|..+.......+..++|...+++++.. |.+...|..-....+                             
T Consensus       208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  286 (493)
T 2uy1_A          208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELD  286 (493)
T ss_dssp             HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccH
Confidence            45777888888877777777779999999999999 999888875544310                             


Q ss_pred             -----------HhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284           95 -----------TLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV  163 (284)
Q Consensus        95 -----------~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v  163 (284)
                                 ..+ ..+.+-..++++ ...+..+++|.....+-..++.+ .+.+...++.+++..|++...|..-...
T Consensus       287 ~lw~~y~~~~~r~~-~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d-~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          287 LLRINHLNYVLKKR-GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS-RATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHH-CHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence                       011 356677788888 43445788887776666666522 7899999999999999988877765666


Q ss_pred             HHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 023284          164 LQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN  216 (284)
Q Consensus       164 l~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~  216 (284)
                      ...+|..+.+...++++    +.....|..-...-...|.....+.++++.++
T Consensus       364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            67788888888888887    34455565444333444554333344444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.83  E-value=0.0036  Score=59.94  Aligned_cols=86  Identities=10%  Similarity=-0.050  Sum_probs=72.2

Q ss_pred             HhhhCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHh
Q 023284           95 TLHTDLQDELAFVGRIAKS--------NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWS  158 (284)
Q Consensus        95 ~l~~~~~~eL~~~~~~l~~--------~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~  158 (284)
                      ..| .+++|+..++++|.+        +|.-..+.++.+.++...|+  +++|+.++.++|++        +|.-..+.+
T Consensus       321 ~qg-~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          321 SEG-LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA--YEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             TTT-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hCC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345 589999999999875        33344667888999999999  99999999999975        455567788


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHhc
Q 023284          159 YRQWVLQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       159 ~r~~vl~~l~~~~eeL~~~~~~l~~  183 (284)
                      +.+.++...|++++|+..+.+++++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999986

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.78  E-value=0.014  Score=45.54  Aligned_cols=93  Identities=15%  Similarity=0.111  Sum_probs=74.1

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhC-c-CChhHHhHHHHHHHHccCcHHHHHHHHHHHh
Q 023284          106 FVGRIAKSNSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLD-A-KNYHAWSYRQWVLQALGGWEDELDYCQMLLG  182 (284)
Q Consensus       106 ~~~~~l~~~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~d-p-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~  182 (284)
                      -+...+..++-+.++=+.-+|.|-+-.. ....+.+.++..++..+ | .+-.+-++.+....++|+|++|+.+++..|+
T Consensus        23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3455566677888888888888876543 11345888999988887 6 7888999999999999999999999999999


Q ss_pred             ccCCChHHHHHHHHHH
Q 023284          183 EDIFNNSAWNQRYFVV  198 (284)
Q Consensus       183 ~dp~n~sAW~~r~~ll  198 (284)
                      ++|.|..|..-+..+-
T Consensus       103 ~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A          103 TEPQNNQAKELERLID  118 (126)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHH
Confidence            9999999887665553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.75  E-value=0.0039  Score=58.79  Aligned_cols=83  Identities=8%  Similarity=0.037  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHH
Q 023284           99 DLQDELAFVGRIAKS-----NSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQW  162 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~-----~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~  162 (284)
                      ++++++..++++|.+     .|.++   .+.++.+.++..+|+  +++|+.++.++|++        +|.-....++.|.
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            478888888888874     34443   456677777888888  88888888888864        5555567788888


Q ss_pred             HHHHccCcHHHHHHHHHHHhc
Q 023284          163 VLQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       163 vl~~l~~~~eeL~~~~~~l~~  183 (284)
                      ++...|++++|+..+.+++++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHH
Confidence            888888888888888888775

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.55  E-value=0.0072  Score=56.93  Aligned_cols=87  Identities=11%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             CCCCHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--------CCCChHHHHHHH
Q 023284           62 DERSSRSFQLTKEAICL-----NPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKS--------NSKNYQLWHHRR  125 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~l-----nP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--------~pkn~~aW~hR~  125 (284)
                      .+..++|+.+++++|.+     -|+|   ..+.+..+.++..+| ++++|+.+++++|.+        +|.-...+++.+
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            34568999999999984     4444   477888899999999 699999999999975        455566788899


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCc
Q 023284          126 WVAEKLGTGAVNKELQFTKKMLSLDA  151 (284)
Q Consensus       126 ~ll~~l~~~~~~eel~~~~~aL~~dp  151 (284)
                      .++...|+  +++|+.++.+|+++--
T Consensus       390 ~~~~~qg~--~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          390 RLYMGLEN--KAAGEKALKKAIAIME  413 (433)
T ss_dssp             HHHHHTTC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHhccC--HHHHHHHHHHHHHHHH
Confidence            99999999  9999999999998743

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.77  E-value=0.088  Score=41.00  Aligned_cols=96  Identities=8%  Similarity=0.058  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284           69 FQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSN-S-KNYQLWHHRRWVAEKLGTGAVNKELQFTK  144 (284)
Q Consensus        69 L~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~-p-kn~~aW~hR~~ll~~l~~~~~~eel~~~~  144 (284)
                      -+.+...+..++....+=+.-+|+|.+-.  .+..+.+.+++.++..+ | ..-..-++.+....++|+  |.+++.+++
T Consensus        21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~--Y~~A~~~~~   98 (126)
T 1nzn_A           21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--YEKALKYVR   98 (126)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh--HHHHHHHHH
Confidence            34455556666777777777777776533  13456888888888877 5 566777788888888888  999999999


Q ss_pred             HHHHhCcCChhHHhHHHHHHHH
Q 023284          145 KMLSLDAKNYHAWSYRQWVLQA  166 (284)
Q Consensus       145 ~aL~~dpkN~~AW~~r~~vl~~  166 (284)
                      .+|+++|.|..|..-+..+-.+
T Consensus        99 ~lL~~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           99 GLLQTEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999998888777665443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.76  E-value=0.025  Score=53.04  Aligned_cols=84  Identities=11%  Similarity=0.047  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHH
Q 023284           99 DLQDELAFVGRIAKS-----NSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQW  162 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~-----~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~  162 (284)
                      .+++++..++++|.+     .|.++   .+.++.+.++...|+  +++|+.++.++|++        +|.-...+++.+.
T Consensus       302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~  379 (429)
T 3qwp_A          302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--LEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK  379 (429)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence            366666666666653     23333   445556666667777  77777777777753        4455567778888


Q ss_pred             HHHHccCcHHHHHHHHHHHhcc
Q 023284          163 VLQALGGWEDELDYCQMLLGED  184 (284)
Q Consensus       163 vl~~l~~~~eeL~~~~~~l~~d  184 (284)
                      ++...|++++|+..+.+++++-
T Consensus       380 ~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          380 LQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHH
Confidence            8888888888888888888763

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.70  E-value=0.065  Score=50.17  Aligned_cols=97  Identities=9%  Similarity=-0.037  Sum_probs=79.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHh-----CcCC---hhHHhHHHHHHHHccCcHHHHHHHHHHHhc--------cCCChHHHHH
Q 023284          130 KLGTGAVNKELQFTKKMLSL-----DAKN---YHAWSYRQWVLQALGGWEDELDYCQMLLGE--------DIFNNSAWNQ  193 (284)
Q Consensus       130 ~l~~~~~~eel~~~~~aL~~-----dpkN---~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~--------dp~n~sAW~~  193 (284)
                      ..|+  ++++++.+.++|++     .|.|   ....++.+.++...|+|++|+.++.++|++        +|.=...+++
T Consensus       299 ~~g~--~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          299 AHWK--WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HTTC--HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhcc--HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            4566  99999999999974     3444   467888899999999999999999999976        4445567889


Q ss_pred             HHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      .|.++...|++.++..+++++++.....  .-|+++.
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~--lG~~Hp~  411 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVT--HGREHSL  411 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCTTSHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHh--cCCCChH
Confidence            9999999999988888889999887766  5666654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.59  E-value=0.23  Score=39.44  Aligned_cols=83  Identities=12%  Similarity=0.089  Sum_probs=53.2

Q ss_pred             CChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284          116 KNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ  193 (284)
Q Consensus       116 kn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~  193 (284)
                      -+.++=+.-.|.|-+-.. ....+.+.+++..+..+| ..-.+-++.+....++|+|++|+.+++.+|+++|+|..|-.-
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            344444444555544432 113456666667666666 455667777777778888888888888888888888777665


Q ss_pred             HHHHH
Q 023284          194 RYFVV  198 (284)
Q Consensus       194 r~~ll  198 (284)
                      +..+-
T Consensus       117 k~~Ie  121 (144)
T 1y8m_A          117 KSMVE  121 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.52  E-value=0.12  Score=40.66  Aligned_cols=79  Identities=13%  Similarity=0.104  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          119 QLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      ++=+.-.|.|-+-.. ....+.+.+++..++.+| ..-.++++.+....++|+|++|+.+++.+|+++|+|..|-.-+..
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            444444555554432 114456777777777777 446777777777788888888888888888888888777665554


Q ss_pred             H
Q 023284          197 V  197 (284)
Q Consensus       197 l  197 (284)
                      +
T Consensus       121 I  121 (134)
T 3o48_A          121 V  121 (134)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.19  E-value=0.41  Score=37.56  Aligned_cols=66  Identities=12%  Similarity=0.100  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNS-KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA  166 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~p-kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~  166 (284)
                      +..+.+.+++.++..+| ..-..+++.+.-..++|+  +.+|+.+++.+|+++|.|-.|-.-+..+-.+
T Consensus        58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd--Y~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~k  124 (134)
T 3o48_A           58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE--YSMAKRYVDTLFEHERNNKQVGALKSMVEDK  124 (134)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            35567777777777777 346667777777777777  7777777777777777777776665554433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.99  E-value=0.4  Score=38.61  Aligned_cols=41  Identities=12%  Similarity=-0.008  Sum_probs=24.2

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCC
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERS------SRSFQLTKEAICLNPG   81 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s------~~aL~~~~~~L~lnP~   81 (284)
                      .|.++|..++.|..|-.++.+.+..      ++.++.|++|+..-|-
T Consensus         5 ~~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp   51 (161)
T 4h7y_A            5 SIMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPP   51 (161)
T ss_dssp             -----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCG
T ss_pred             ceeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCc
Confidence            4567777777776666666654545      6677777777766654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.84  E-value=1.1  Score=35.48  Aligned_cols=79  Identities=10%  Similarity=0.003  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284           85 VWHFRRQIIETLH--TDLQDELAFVGRIAKSNSK-NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ  161 (284)
Q Consensus        85 aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pk-n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~  161 (284)
                      +=+.-.|+|..-.  .+.++.+.+++.++..+|. .-..-++...-..++|+  |.+++.+++.+|+++|.|-.|-.-+.
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~--Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE--YSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            3333344444322  2345677777777777663 44455555555566677  77777777777777777777766555


Q ss_pred             HHHH
Q 023284          162 WVLQ  165 (284)
Q Consensus       162 ~vl~  165 (284)
                      .+-.
T Consensus       119 ~Ie~  122 (144)
T 1y8m_A          119 MVED  122 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.68  E-value=8.2  Score=36.42  Aligned_cols=115  Identities=12%  Similarity=0.055  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPG-NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN-SKNYQLWHHRRWVAEKLGTGAVNKELQFT  143 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~-~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-pkn~~aW~hR~~ll~~l~~~~~~eel~~~  143 (284)
                      ++|+++++.+....-. +...|+..-..+-..| ++++|+++++.+.... .-+...|+.--..+-+.|+  .+++++++
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~--~~~A~~l~  163 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD--ADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC--HHHHHHHH
Confidence            5788899888765322 4555666656666667 5999999999988753 3367778777777778888  99999999


Q ss_pred             HHHHHhCcC-ChhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284          144 KKMLSLDAK-NYHAWSYRQWVLQALGGWEDELDYCQMLLGE  183 (284)
Q Consensus       144 ~~aL~~dpk-N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~  183 (284)
                      +.+.+..-. |...|+-...++.+.|+.++|++.++++-+.
T Consensus       164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            999986533 6677888888889999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.66  E-value=9.1  Score=36.12  Aligned_cols=167  Identities=7%  Similarity=0.045  Sum_probs=115.7

Q ss_pred             hcCCCCHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhh--------hCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 023284           60 YSDERSSRSFQLTKEAICL--NPGNYTVWHFRRQIIETLH--------TDLQDELAFVGRIAKSNS-KNYQLWHHRRWVA  128 (284)
Q Consensus        60 ~~~~~s~~aL~~~~~~L~l--nP~~~~aW~~R~~~L~~l~--------~~~~~eL~~~~~~l~~~p-kn~~aW~hR~~ll  128 (284)
                      .+.+..++|+++++.+...  .|+. ..|+..-.++...+        ..++++++.++.+....- -|..+|+.--..+
T Consensus        37 ~k~G~~~~A~~lf~~M~~~Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~  115 (501)
T 4g26_A           37 SKKGDVLEALRLYDEARRNGVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA  115 (501)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            4566779999999998875  3443 33433222221111        126789999998876543 3777888877778


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC-ChHHHHHHHHHHhcCCCCch
Q 023284          129 EKLGTGAVNKELQFTKKMLSLDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF-NNSAWNQRYFVVTRSPLLGG  206 (284)
Q Consensus       129 ~~l~~~~~~eel~~~~~aL~~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~-n~sAW~~r~~ll~~l~~~~~  206 (284)
                      -+.|+  +++|+.+++.+.+..- -|...|+-....+.+.|++++|++.++++.+.... |...|+..-..+.+.|+.  
T Consensus       116 ~~~g~--~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~--  191 (501)
T 4g26_A          116 VAKDD--PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA--  191 (501)
T ss_dssp             HHHTC--HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH--
T ss_pred             HhcCC--HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH--
Confidence            88898  9999999999988643 37788888888888999999999999999987654 556676665566666764  


Q ss_pred             hhhhHHHHHHHHHHHH--hcCCCCccHHHHHHH
Q 023284          207 LIAMRDSEVNFTIEAI--LGNPENESPWRYLRG  237 (284)
Q Consensus       207 ~~~~~~~el~~~~~~i--~~~P~nesaW~y~~~  237 (284)
                           +++++.+++.-  ...|+ ++.++-+..
T Consensus       192 -----d~A~~ll~~Mr~~g~~ps-~~T~~~l~~  218 (501)
T 4g26_A          192 -----DKVYKTLQRLRDLVRQVS-KSTFDMIEE  218 (501)
T ss_dssp             -----HHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence                 55666665543  35565 445544443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.45  E-value=3  Score=33.50  Aligned_cols=114  Identities=7%  Similarity=-0.039  Sum_probs=78.2

Q ss_pred             HHhCCCcHHHHHHHHHHHHHhhhC-----HHHHHHHHHHHHHhCCCChHHHHHHHHH--------HHHhCCCCHHHHHHH
Q 023284           76 ICLNPGNYTVWHFRRQIIETLHTD-----LQDELAFVGRIAKSNSKNYQLWHHRRWV--------AEKLGTGAVNKELQF  142 (284)
Q Consensus        76 L~lnP~~~~aW~~R~~~L~~l~~~-----~~~eL~~~~~~l~~~pkn~~aW~hR~~l--------l~~l~~~~~~eel~~  142 (284)
                      |.+.|.+|..|..--..++.-|..     +++-++.|++++..-|-.-. =..|+.+        +..+++  .+++-+.
T Consensus         6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~-~~wrrYI~LWIrYA~~~ei~D--~d~aR~v   82 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY-GQNESFARIQVRFAELKAIQE--PDDARDY   82 (161)
T ss_dssp             ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG-TTCHHHHHHHHHHHHHHHHHC--GGGCHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc-ccHHHHHHHHHHHHHHHHhcC--HHHHHHH
Confidence            457899999999888888777743     37778899999987765421 1112222        134455  7788899


Q ss_pred             HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      |..+++.+.+....|...+-.=-+-|....|.....++|.+.|.......
T Consensus        83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            99999986666555655555555567889999999999999998766543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.40  E-value=2.5  Score=42.42  Aligned_cols=114  Identities=10%  Similarity=0.075  Sum_probs=73.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHhhhCHHHHHHHHHHHHH--------hCCCChHH---HHHHHHHH
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQI--IETLHTDLQDELAFVGRIAK--------SNSKNYQL---WHHRRWVA  128 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~--L~~l~~~~~~eL~~~~~~l~--------~~pkn~~a---W~hR~~ll  128 (284)
                      +.+.+.|+++++++....|....... +..+  +..++..--+++......+.        ..++....   ......+|
T Consensus       262 ~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL  340 (754)
T 4gns_B          262 PSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL  340 (754)
T ss_dssp             GGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence            34457899999999999998754322 2111  11112111234444444442        23333321   12222222


Q ss_pred             -------HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284          129 -------EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus       129 -------~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                             ..-|+  ++-||.+-.+++..-|..+.+|....-++-.+|+|+.||-..+
T Consensus       341 ~~Qa~FLl~K~~--~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN  395 (754)
T 4gns_B          341 NIQTNFLLNRGD--YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN  395 (754)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhccCc--HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence                   23355  9999999999999999999999999999999999999985544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=85.30  E-value=6  Score=37.63  Aligned_cols=65  Identities=8%  Similarity=0.023  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      +..+..+|.+|+.+.|.+-.++++.|.+...-++.-+++-+|-+++....-...|+.+...++.+
T Consensus       168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            67788888888888888888888888888887777788888888888777777888777776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=81.27  E-value=14  Score=37.10  Aligned_cols=104  Identities=9%  Similarity=0.041  Sum_probs=67.7

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH--------hCcCChh----------HHh
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT--GAVNKELQFTKKMLS--------LDAKNYH----------AWS  158 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~--~~~~eel~~~~~aL~--------~dpkN~~----------AW~  158 (284)
                      .++.++++++++...+|.+..  .....++..+..  ..-.+++.....+++        ..+++..          ..+
T Consensus       264 ~~~~a~~~le~L~~~~p~~~~--~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~  341 (754)
T 4gns_B          264 LVDFTIDYLKGLTKKDPIHDI--YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN  341 (754)
T ss_dssp             GHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCchhH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence            367899999999999997743  333333332211  012334455555553        1233322          122


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284          159 YRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL  204 (284)
Q Consensus       159 ~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~  204 (284)
                      -..-.+..-++++-||++..+++..-|.....|.....+.-.++.+
T Consensus       342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~  387 (754)
T 4gns_B          342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY  387 (754)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH
Confidence            2223333458899999999999999999999999999999888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	284
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	8e-40
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-26

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 8e-40
 Identities = 109/230 (47%), Positives = 151/230 (65%), Gaps = 3/230 (1%)

Query: 12  EAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQL 71
               +    R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+L
Sbjct: 6   SPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKL 65

Query: 72  TKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131
           T++AI LN  NYTVWHFRR ++++L  DL +E+ ++  I +   KNYQ+WHHRR + E L
Sbjct: 66  TRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 125

Query: 132 GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW 191
                ++EL+F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS W
Sbjct: 126 RD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 183

Query: 192 NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
           NQRYFV++ +       A+ + EV +T+E I   P NES W YL+G+ +D
Sbjct: 184 NQRYFVISNTT-GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  103 bits (256), Expect = 4e-26
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 17/222 (7%)

Query: 47  EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD------- 99
            +            + E      +LT + +  NP   T+W+ RR++++ L T+       
Sbjct: 27  LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESA 86

Query: 100 --LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157
             ++ EL F+    + N K+Y  WHHR W+  +L      +EL+   + L  D +N+H W
Sbjct: 87  ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW 146

Query: 158 SYRQW-VLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR-------SPLLGGLIA 209
            YR++   QA     +EL +   L+  +  N S+W+ R  ++ +        P       
Sbjct: 147 DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN 206

Query: 210 MRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPR 251
           +   E+     A   +P ++S W Y R L       +  +  
Sbjct: 207 VLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELS 248

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	100.0
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.96
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.82
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.68
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.53
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.51
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.49
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.37
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.35
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.34
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.34
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.31
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.28
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.28
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.27
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.26
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.24
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.2
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.18
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.15
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.05
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.02
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.87
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.75
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.7
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.62
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.58
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.51
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.48
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.41
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.32
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.26
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.69
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.66
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.5
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.48
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.93

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-48  Score=352.31  Aligned_cols=230  Identities=47%  Similarity=0.901  Sum_probs=220.1

Q ss_pred             hccccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHH
Q 023284           11 QEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRR   90 (284)
Q Consensus        11 ~~~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~   90 (284)
                      +..++++|++||+|+||+|+|++++++|+++|.|+|+|.+|++++++++.+++++++||+++++||++||++++||++||
T Consensus         5 ~~~~~~~y~~~~~~~d~~p~~~~~~~~~~~~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~   84 (315)
T d2h6fa1           5 DSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR   84 (315)
T ss_dssp             TSTTCCCGGGCGGGTTSCCCCCCCCSSCSSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcceeccCCccccccCccCcCCCCCcccccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284           91 QIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW  170 (284)
Q Consensus        91 ~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~  170 (284)
                      .++..+++++++|++++++++..+|+++++|+|||+++..+|+  +++|++++++++++||+|+++|++||+++..++++
T Consensus        85 ~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~--~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~  162 (315)
T d2h6fa1          85 VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  162 (315)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc--HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhh
Confidence            9999999889999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          171 EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       171 ~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      ++|+++++++|++||+|.+||++|++++..++..... ..+++|++++.++|.++|+|+++|+|+++++...+
T Consensus       163 ~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~-~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         163 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  234 (315)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH-HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh-hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999998876543 23688999999999999999999999999987653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.4e-29  Score=226.17  Aligned_cols=184  Identities=27%  Similarity=0.478  Sum_probs=170.2

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDERS-SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY  118 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~s-~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~  118 (284)
                      .+|.+||++.+||++++.++.+.+.. ++|++.++++|.++|+++.+|++||.++..+| ++++|++++++++.++|+|+
T Consensus        68 ~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~-~~~eAl~~~~kal~~dp~n~  146 (315)
T d2h6fa1          68 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNY  146 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc-cHHHHHHHHhhhhhhhhcch
Confidence            67889999999999999999987764 89999999999999999999999999999999 58999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC------cHHHHHHHHHHHhccCCChHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG------WEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~------~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      ++|++||+++..+|+  +++|+++++++|++||+|++||++|+.++..++.      +++|++++.++|+.+|+|.++|+
T Consensus       147 ~a~~~~~~~~~~~~~--~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~  224 (315)
T d2h6fa1         147 HAWQHRQWVIQEFKL--WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN  224 (315)
T ss_dssp             HHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHH
Confidence            999999999999999  9999999999999999999999999999999887      47899999999999999999999


Q ss_pred             HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284          193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY  234 (284)
Q Consensus       193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y  234 (284)
                      +++.++...+.        +++.+.+.+++.+.|++.+.|.+
T Consensus       225 ~l~~ll~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~  258 (315)
T d2h6fa1         225 YLKGILQDRGL--------SKYPNLLNQLLDLQPSHSSPYLI  258 (315)
T ss_dssp             HHHHHHTTTCG--------GGCHHHHHHHHHHTTTCCCHHHH
T ss_pred             HHHHHHHhcCh--------HHHHHHHHHHHHhCCCcCCHHHH
Confidence            99999876542        34567788899999998887754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=7e-25  Score=197.05  Aligned_cols=200  Identities=25%  Similarity=0.455  Sum_probs=176.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC---------HHHHHHHHHHHHHhCCC
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSK  116 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~---------~~~eL~~~~~~l~~~pk  116 (284)
                      +.+..+.....+....++.+++|+++++++|.+||+++++|++|+.++..++..         +++|+.++++++..+|+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk  105 (334)
T d1dcea1          26 KLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK  105 (334)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            456667777777888899999999999999999999999999999999987632         78999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH-HHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284          117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ-WVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY  195 (284)
Q Consensus       117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~-~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~  195 (284)
                      ++.+|++||+++..++...+++++.++.++++++|+++++|.++. .++...+.+++|+++++++|+++|+|.++|+++|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~  185 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS  185 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999999865589999999999999999999998765 5566678899999999999999999999999999


Q ss_pred             HHHhcCCCCch-------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCcc
Q 023284          196 FVVTRSPLLGG-------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES  245 (284)
Q Consensus       196 ~ll~~l~~~~~-------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~  245 (284)
                      .++..++++++       ...+....++++..++.+.|.+++.|.|.+++.......
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~  242 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL  242 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchh
Confidence            99999887654       224456678888899999999999999999988765543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.3e-22  Score=182.00  Aligned_cols=192  Identities=19%  Similarity=0.310  Sum_probs=154.3

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHH
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDER----------SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVG  108 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~----------s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~  108 (284)
                      ..|..+|++.++|++++.++.....          .++|+.+++++|+.+|+++.+|++|++++..++. ++++++.++.
T Consensus        54 ~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~  133 (334)
T d1dcea1          54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA  133 (334)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHH
Confidence            4567999999999999998776433          3689999999999999999999999999999874 4899999999


Q ss_pred             HHHHhCCCChHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc-----------------
Q 023284          109 RIAKSNSKNYQLWHHRRW-VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW-----------------  170 (284)
Q Consensus       109 ~~l~~~pkn~~aW~hR~~-ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~-----------------  170 (284)
                      +++..+|+++.+|.++.+ ++...+.  +++|++++++++++||.|+.+|+++|.++..+|++                 
T Consensus       134 ~al~~~~~~~~~~~~~~~~~~~~~~~--~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  211 (334)
T d1dcea1         134 RFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE  211 (334)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTCCC--HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred             HHHhhCchhhhhhhhHHHHHHHhccc--cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH
Confidence            999999999999987765 4455677  99999999999999999999999999999998753                 


Q ss_pred             -----------------------------------------------HHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284          171 -----------------------------------------------EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL  203 (284)
Q Consensus       171 -----------------------------------------------~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~  203 (284)
                                                                     .+++..+.+++..+|.+..+|..+|.++..+++
T Consensus       212 ~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  291 (334)
T d1dcea1         212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY  291 (334)
T ss_dssp             HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCC
Confidence                                                           233344444444444444444444444444443


Q ss_pred             CchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284          204 LGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK  240 (284)
Q Consensus       204 ~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~  240 (284)
                             +++++++++++|+++|.+...|.+++..+.
T Consensus       292 -------~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         292 -------EKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             -------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence                   588999999999999998889988866544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.1e-21  Score=168.22  Aligned_cols=193  Identities=12%  Similarity=0.060  Sum_probs=180.4

Q ss_pred             eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284           41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL  120 (284)
Q Consensus        41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a  120 (284)
                      .|..+|++..++..++.++...+..++|+..+.+++.++|.+..+|..++.++...| ++++++.++++++..+|++..+
T Consensus       195 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~  273 (388)
T d1w3ba_         195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-LIDLAIDTYRRAIELQPHFPDA  273 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHH
Confidence            456788999999999988888888899999999999999999999999999999988 6999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      |...+.++...|+  +.++++.+.+++...|.+..++..++.++...|++++|+++++++|+++|++..+|..+|.++..
T Consensus       274 ~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         274 YCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHHSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       201 l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      +|++       +++++++.++|+++|++..+|..++.++..++
T Consensus       352 ~g~~-------~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         352 QGKL-------QEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             TTCC-------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             cCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9986       78899999999999999999999888877653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-19  Score=159.42  Aligned_cols=183  Identities=11%  Similarity=0.059  Sum_probs=161.6

Q ss_pred             ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh---------------------
Q 023284           40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT---------------------   98 (284)
Q Consensus        40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~---------------------   98 (284)
                      -.|..+|++.++|..++.++...+..++|+.++.+++.++|++..+|..++.++..+|.                     
T Consensus        44 ~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  123 (323)
T d1fcha_          44 AAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL  123 (323)
T ss_dssp             HHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHH
Confidence            34778999999999999999999999999999999999999999999999998877651                     


Q ss_pred             ---------------------------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284           99 ---------------------------DLQDELAFVGRIAKSNSKN--YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL  149 (284)
Q Consensus        99 ---------------------------~~~~eL~~~~~~l~~~pkn--~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~  149 (284)
                                                 .+.+++..+.+++..+|.+  ..+|...+.++...|+  +++++.++++++..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~  201 (323)
T d1fcha_         124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--YDKAVDCFTAALSV  201 (323)
T ss_dssp             CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH--Hhhhhccccccccc
Confidence                                       1345666777777777765  4667778889999998  99999999999999


Q ss_pred             CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284          150 DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE  229 (284)
Q Consensus       150 dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne  229 (284)
                      +|.+..+|..+|.++..+|++++|+++++++|+.+|++..+|..+|.++.+++++       +++++++.++|.++|++.
T Consensus       202 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHTC-
T ss_pred             ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCCcCh
Confidence            9999999999999999999999999999999999999999999999999999884       889999999999999887


Q ss_pred             cH
Q 023284          230 SP  231 (284)
Q Consensus       230 sa  231 (284)
                      .+
T Consensus       275 ~~  276 (323)
T d1fcha_         275 GP  276 (323)
T ss_dssp             --
T ss_pred             hh
Confidence            64

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.3e-19  Score=155.47  Aligned_cols=196  Identities=9%  Similarity=0.015  Sum_probs=168.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT-  133 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~-  133 (284)
                      .+..+.+.+..++|+.+++++|+.+|++..+|..+|.++..+| ++++++.++++++.++|++..+|...+.++..+|+ 
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE-QELLAISALRRCLELKPDNQTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHhhhccccccccccccccccccccccc
Confidence            4555556667799999999999999999999999999999999 69999999999999999999999999999988776 


Q ss_pred             ----------------------------------------------CCHHHHHHHHHHHHHhCcCCh--hHHhHHHHHHH
Q 023284          134 ----------------------------------------------GAVNKELQFTKKMLSLDAKNY--HAWSYRQWVLQ  165 (284)
Q Consensus       134 ----------------------------------------------~~~~eel~~~~~aL~~dpkN~--~AW~~r~~vl~  165 (284)
                                                                    ..+.+++..+.++++++|.+.  .+|...+.++.
T Consensus       104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~  183 (323)
T d1fcha_         104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN  183 (323)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred             cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence                                                          013445566677777777654  45777788999


Q ss_pred             HccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCcc
Q 023284          166 ALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES  245 (284)
Q Consensus       166 ~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~  245 (284)
                      ..|++++|+.++++++..+|.+..+|..+|.++..++++       +++++++.++|+++|++..+|..++.++...+  
T Consensus       184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--  254 (323)
T d1fcha_         184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS-------EEAVAAYRRALELQPGYIRSRYNLGISCINLG--  254 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--
T ss_pred             HHHHHhhhhcccccccccccccccchhhhhhcccccccc-------hhHHHHHHHHHHHhhccHHHHHHHHHHHHHCC--
Confidence            999999999999999999999999999999999999884       78999999999999999999988888887765  


Q ss_pred             CCCChhhHHHHHhhhhc
Q 023284          246 WINDPRMLLSVFESFEY  262 (284)
Q Consensus       246 ~~~~~~~~~~~~~~~~~  262 (284)
                        ++++++..+.++|+-
T Consensus       255 --~~~~A~~~~~~al~l  269 (323)
T d1fcha_         255 --AHREAVEHFLEALNM  269 (323)
T ss_dssp             --CHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHh
Confidence              367888888887653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.8e-19  Score=155.60  Aligned_cols=207  Identities=13%  Similarity=0.114  Sum_probs=191.9

Q ss_pred             eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      +...|+...++..++.+....+..++|+..+.+++.++|++..+|..++.++...| ++++++..+++++..+|.+..+|
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~  240 (388)
T d1w3ba_         162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-IFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccc-cHHHHHHHHHHhHHHhhhHHHHH
Confidence            45677888888888888888888899999999999999999999999999999988 59999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      ...+.++...|+  +++++.+++++++++|.+..+|..++.++...|++++|++.+++++...|.+..++..++.++...
T Consensus       241 ~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         241 GNLACVYYEQGL--IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence            999999999999  999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284          202 PLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY  262 (284)
Q Consensus       202 ~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      +++       +++++++.++|+++|++..+|..++.++...+    +..+++.++.++|+-
T Consensus       319 ~~~-------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         319 GNI-------EEAVRLYRKALEVFPEFAAAHSNLASVLQQQG----KLQEALMHYKEAIRI  368 (388)
T ss_dssp             TCH-------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT----CCHHHHHHHHHHHTT
T ss_pred             CCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence            874       88999999999999999999988888887764    467888888888653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=5.1e-18  Score=144.94  Aligned_cols=182  Identities=10%  Similarity=-0.077  Sum_probs=154.2

Q ss_pred             ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284           45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR  124 (284)
Q Consensus        45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR  124 (284)
                      +|+...++..++.++...+..++|+..++++|.++|++..+|+.+|.++..+| ++++++.++++++.++|++..+|.++
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH-HHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            55677788889999999999999999999999999999999999999999999 69999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-----------------------------------
Q 023284          125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-----------------------------------  169 (284)
Q Consensus       125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-----------------------------------  169 (284)
                      |.++..+|+  ++++++.++++++++|.+..+..+.+.....++.                                   
T Consensus       112 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
T d1xnfa_         112 GIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT  189 (259)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHhh--HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHH
Confidence            999999999  9999999999999999999887777666555442                                   


Q ss_pred             -cHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284          170 -WEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLR  236 (284)
Q Consensus       170 -~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~  236 (284)
                       .+.+...+...+...|....+|+++|.++...|.       ++++++++.++|..+|++...+.+..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~a~  250 (259)
T d1xnfa_         190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-------LDSATALFKLAVANNVHNFVEHRYAL  250 (259)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence             1233444455556677777788888888888777       47899999999999999876554433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.3e-16  Score=133.41  Aligned_cols=191  Identities=9%  Similarity=-0.073  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284           66 SRSFQLTKEAICL----NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        66 ~~aL~~~~~~L~l----nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~  141 (284)
                      +.+|..+++++..    +|....+++.+|.++..+| .+++|+..|+++|.++|+++.+|+.+|.++..+|+  +++++.
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g-~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~--~~~A~~   92 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--FDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH--HHHhhh
Confidence            4455555666653    3456679999999999999 69999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCc----------------
Q 023284          142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLG----------------  205 (284)
Q Consensus       142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~----------------  205 (284)
                      +++++++++|.+..+|.++|.++..+|++++|++.++++++++|.+..+..+.+.....++...                
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            9999999999999999999999999999999999999999999999888776665443322100                


Q ss_pred             -h------------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhcc
Q 023284          206 -G------------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQ  263 (284)
Q Consensus       206 -~------------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  263 (284)
                       .            .....+.+...+...+...|....+|++++.++...+    +.++++..+.++|.-+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         173 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG----DLDSATALFKLAVANN  239 (259)
T ss_dssp             THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcC
Confidence             0            0011333444445556667777778888877776654    4778888888887543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.9e-15  Score=112.42  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHH
Q 023284           86 WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQ  165 (284)
Q Consensus        86 W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~  165 (284)
                      ...+|..+...| ++++++.+|+++|..+|.++.+|..++.++..+|+  +++++..+.++++++|.|..+|+++|.++.
T Consensus         6 l~~~g~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           6 LKEKGNKALSVG-NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--YQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHhcCCcchhhhhccccccccccc--ccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            345788888888 59999999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             HccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284          166 ALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV  197 (284)
Q Consensus       166 ~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l  197 (284)
                      .+|++++|+.+++++++++|+|..++..++.+
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999998877655

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-14  Score=110.30  Aligned_cols=107  Identities=12%  Similarity=0.093  Sum_probs=100.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      .+|..+...|+  +++++.+|+++|+++|.+..+|..+|.++..+|++++|+..+.++|+++|+|..+|+++|.++..++
T Consensus         8 ~~g~~~~~~g~--~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           8 EKGNKALSVGN--IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC--HHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            47888888999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284          203 LLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL  238 (284)
Q Consensus       203 ~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l  238 (284)
                      ++       ++++.++.++|+++|+++.++..+.-+
T Consensus        86 ~~-------~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          86 RF-------EEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             CH-------HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CH-------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            84       889999999999999999988765543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-13  Score=110.02  Aligned_cols=109  Identities=14%  Similarity=0.094  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284           87 HFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA  166 (284)
Q Consensus        87 ~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~  166 (284)
                      .-+|..+...| ++++|+.++.+++..+|.+..+|.++|.++..+|+  +++++.+++++|+++|.+..+|..+|.++..
T Consensus        14 ~~~gn~~~~~~-~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          14 KTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--YGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc--cchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34577777777 58888888888888888888888888888888888  8888888888888888888888888888888


Q ss_pred             ccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          167 LGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       167 l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      +|++++|+.++++++.++|.|..++...+.+.
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            88888888888888888888888887766553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.5e-13  Score=107.93  Aligned_cols=114  Identities=16%  Similarity=0.102  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE  129 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~  129 (284)
                      ......+..+.+.+..++|+.++.++|+++|++..+|+.+|.++..+| ++++++.++++++..+|++..+|..+|.++.
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhcc-ccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            334456667777888899999999999999999999999999999999 6999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284          130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA  166 (284)
Q Consensus       130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~  166 (284)
                      .+|+  +++++.++.+++.++|.|..++.+.+.+...
T Consensus        90 ~~g~--~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          90 ALGK--FRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999  9999999999999999999999887666443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.4e-14  Score=114.40  Aligned_cols=99  Identities=12%  Similarity=0.083  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHH
Q 023284           86 WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQ  165 (284)
Q Consensus        86 W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~  165 (284)
                      ..-.|..+...| ++++|+.+|+++|.++|++..+|+++|.++..+|+  +++|+.++.++|+++|.|..+|.++|.++.
T Consensus         7 l~~~Gn~~~~~g-~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~--~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           7 LKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh--hhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            334455555555 35555555555555555555555555555555555  555555555555555555555555555555


Q ss_pred             HccCcHHHHHHHHHHHhccCCC
Q 023284          166 ALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       166 ~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                      .+|++++|+.++.++++++|.+
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCccc
Confidence            5555555555555555555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-12  Score=108.67  Aligned_cols=128  Identities=5%  Similarity=-0.022  Sum_probs=114.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284           55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG  134 (284)
Q Consensus        55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~  134 (284)
                      .+......+..++|++.+++   +.|.+..+|+++|.+...+| ++++|+++|+++++++|+++.+|++||.++.++|+ 
T Consensus        11 ~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g-~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~-   85 (192)
T d1hh8a_          11 EGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILK-NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK-   85 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc-
Confidence            36666667777999999986   46778899999999999999 69999999999999999999999999999999999 


Q ss_pred             CHHHHHHHHHHHHHhCcCCh----------------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          135 AVNKELQFTKKMLSLDAKNY----------------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       135 ~~~eel~~~~~aL~~dpkN~----------------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                       +++++..+++++...+.|.                .++++++.+...+|++++|++.+.+++.++|...
T Consensus        86 -~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          86 -YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             -HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             -HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence             9999999999999877653                5678899999999999999999999999999753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6e-13  Score=110.45  Aligned_cols=134  Identities=9%  Similarity=0.007  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284           85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL  164 (284)
Q Consensus        85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl  164 (284)
                      .| ++|.+....| +++++++.+++   +.|.+..+|+++|.++..+|+  +++|+++|+++|++||++..+|+++|.++
T Consensus         8 l~-~~g~~~~~~~-d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~--~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           8 LW-NEGVLAADKK-DWKGALDAFSA---VQDPHSRICFNIGCMYTILKN--MTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HH-HHHHHHHHTT-CHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHCC-CHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            44 5788888888 79999999986   467788999999999999999  99999999999999999999999999999


Q ss_pred             HHccCcHHHHHHHHHHHhccCCCh----------------HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284          165 QALGGWEDELDYCQMLLGEDIFNN----------------SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN  228 (284)
Q Consensus       165 ~~l~~~~eeL~~~~~~l~~dp~n~----------------sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n  228 (284)
                      .++|++++|++.++++|...+.|.                .++++++.+...++.+       +++++.+.+++.+.|+.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~-------~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW-------KKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHTTCCSG
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhcCCCc
Confidence            999999999999999999877664                4577888888888874       77899999999999986


Q ss_pred             ccHH
Q 023284          229 ESPW  232 (284)
Q Consensus       229 esaW  232 (284)
                      ....
T Consensus       154 ~~~~  157 (192)
T d1hh8a_         154 RHSK  157 (192)
T ss_dssp             GGGH
T ss_pred             chHH
Confidence            5443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.5e-13  Score=110.26  Aligned_cols=110  Identities=9%  Similarity=0.021  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 023284           51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK  130 (284)
Q Consensus        51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~  130 (284)
                      .+.-.|..+.+.+..++|+..++++|.++|.+..+|+.+|.++..+| ++++|+.++++++.++|.+..+|.++|.++..
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~-~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-QPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh-hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34456777788888899999999999999999999999999999999 69999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284          131 LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV  163 (284)
Q Consensus       131 l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v  163 (284)
                      +|+  +++++.++.++++++|.+...|....+.
T Consensus        85 l~~--~~~A~~~~~~al~l~p~~~~~~~~~~~~  115 (201)
T d2c2la1          85 MES--YDEAIANLQRAYSLAKEQRLNFGDDIPS  115 (201)
T ss_dssp             TTC--HHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred             CCC--HHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            999  9999999999999999887777665443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.38  E-value=2.7e-12  Score=97.19  Aligned_cols=95  Identities=8%  Similarity=-0.021  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284           84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV  163 (284)
Q Consensus        84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v  163 (284)
                      +.++.+|.++...| ++++++.++++++..+|++..+|.++|.++..+|+  +++++.+++++++++|.+..+|..++.+
T Consensus        17 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~a~~~la~~   93 (112)
T d1hxia_          17 ENPMEEGLSMLKLA-NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--DGLAIIALNHARMLDPKDIAVHAALAVS   93 (112)
T ss_dssp             SCHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh--HHHhhcccccccccccccccchHHHHHH
Confidence            44677888888888 58899999999999999999999999999999988  9999999999999999999999999999


Q ss_pred             HHHccCcHHHHHHHHHHH
Q 023284          164 LQALGGWEDELDYCQMLL  181 (284)
Q Consensus       164 l~~l~~~~eeL~~~~~~l  181 (284)
                      +...|++++|+++++++|
T Consensus        94 y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          94 HTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHh
Confidence            999999999999998876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.37  E-value=9e-12  Score=99.40  Aligned_cols=127  Identities=13%  Similarity=-0.041  Sum_probs=96.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 023284           54 YFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT  133 (284)
Q Consensus        54 ~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~  133 (284)
                      -.|..+.+.+...+|+..|.++|.+.|.....-              ..........+     ...++.+++.++.++|+
T Consensus        22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~~~-----~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1          22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKKNI-----EISCNLNLATCYNKNKD   82 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHHHH-----HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhhhH-----HHHHHhhHHHHHHHhcc
Confidence            345555566666788888888887766432100              00000000111     12467889999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          134 GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       134 ~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                        +.+++.++.++|+++|.|..||+.+|.++..+|++++|+.++.++++++|+|..++.....+..++
T Consensus        83 --~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          83 --YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             --HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             --cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence              999999999999999999999999999999999999999999999999999999988877766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.35  E-value=1.1e-11  Score=100.27  Aligned_cols=82  Identities=17%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      .++.+++.++..+|+  +.+++.+++++|+++|.|..+|+.+|.++..+|++++|+.++.+++.++|+|..++..++.+.
T Consensus        65 ~~~~Nla~~~~~l~~--~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          65 AAFLNLAMCYLKLRE--YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhh--cccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            457789999999999  999999999999999999999999999999999999999999999999999999999888876


Q ss_pred             hcCC
Q 023284          199 TRSP  202 (284)
Q Consensus       199 ~~l~  202 (284)
                      ..+.
T Consensus       143 ~~~~  146 (168)
T d1kt1a1         143 KKAK  146 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.3e-11  Score=98.69  Aligned_cols=129  Identities=17%  Similarity=0.074  Sum_probs=98.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284           52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l  131 (284)
                      +...|..+...+..++|+.+|.++|.+.|.....+......+..+.                    ..++..++.++.++
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~nla~~y~k~   75 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR--------------------LASHLNLAMCHLKL   75 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH--------------------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhH--------------------HHHHHHHHHHHHhh
Confidence            3445555555566677777777777776655443332222111111                    13567788999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          132 GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      |+  +++++.+++++|+++|.|..+|+.+|.++..+|++++|+.++.++++++|+|..+....+.+...+.
T Consensus        76 ~~--~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          76 QA--FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             TC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             hh--cccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99  9999999999999999999999999999999999999999999999999999999888887765553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.34  E-value=4.8e-12  Score=100.39  Aligned_cols=99  Identities=12%  Similarity=0.026  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc---
Q 023284          100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT--------GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG---  168 (284)
Q Consensus       100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~--------~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~---  168 (284)
                      +++++..+++++.++|++..+++.+|.++..++.        ..+++++..++++++++|++..+|+++|.++..+|   
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            4444555555555555555555555444433221        01566777777777777777777777777776554   


Q ss_pred             --------CcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          169 --------GWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       169 --------~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                              .+++|++++.++|+++|.|..++...+...
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence                    357899999999999999988887776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.31  E-value=4e-12  Score=100.90  Aligned_cols=107  Identities=10%  Similarity=-0.041  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh---------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-
Q 023284           64 RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT---------DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT-  133 (284)
Q Consensus        64 ~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~---------~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~-  133 (284)
                      ..++|+..++++|+++|++..+++.+|.++..++.         .+++++..+++++.++|+++.+|+.+|.++..+|+ 
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~   91 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   91 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc
Confidence            35899999999999999999999999999976531         36899999999999999999999999999987753 


Q ss_pred             --------CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284          134 --------GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW  170 (284)
Q Consensus       134 --------~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~  170 (284)
                              ..+.++++++.++++++|.|..++...+.+....+.+
T Consensus        92 ~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          92 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence                    1268899999999999999998887766665444333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.28  E-value=1.1e-11  Score=93.86  Aligned_cols=95  Identities=6%  Similarity=-0.149  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284          119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV  198 (284)
Q Consensus       119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll  198 (284)
                      ..+.+.|.++.+.|+  +.+++.+++++++++|++..+|.++|.++..++++++|+.+++++|+++|.+..+|..++.++
T Consensus        17 ~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y   94 (112)
T d1hxia_          17 ENPMEEGLSMLKLAN--LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   94 (112)
T ss_dssp             SCHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh--hHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence            456888999999999  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHH
Q 023284          199 TRSPLLGGLIAMRDSEVNFTIEAI  222 (284)
Q Consensus       199 ~~l~~~~~~~~~~~~el~~~~~~i  222 (284)
                      ...|.+       ++++++++++|
T Consensus        95 ~~~g~~-------~~A~~~l~~~l  111 (112)
T d1hxia_          95 TNEHNA-------NAALASLRAWL  111 (112)
T ss_dssp             HHHHHH-------HHHHHHHHHHH
T ss_pred             HHCCCH-------HHHHHHHHHHh
Confidence            988764       77888888876

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=1.8e-11  Score=98.79  Aligned_cols=130  Identities=11%  Similarity=0.009  Sum_probs=104.5

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284           52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l  131 (284)
                      ....+......+...+|+..+.++|.+.+..                   ............+|.+..+|.+++.++.++
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-------------------RAAAEDADGAKLQPVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhh
Confidence            3344555556677789999999988653221                   111112334456777888999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284          132 GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP  202 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~  202 (284)
                      |+  +++++..|+++|+++|.+..+|+++|.++..+|++++|++++.++++++|.|..+......+...+.
T Consensus        91 ~~--~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1          91 SD--WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             TC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cc--cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99  9999999999999999999999999999999999999999999999999999999888887766554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=1.9e-11  Score=98.65  Aligned_cols=60  Identities=15%  Similarity=0.049  Sum_probs=36.7

Q ss_pred             HHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch
Q 023284          147 LSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG  206 (284)
Q Consensus       147 L~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~  206 (284)
                      ..++|.+..++.+++.++.++|++++|+.+++++|+++|.+..||..+|.++..++++..
T Consensus        70 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~  129 (169)
T d1ihga1          70 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQ  129 (169)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHH
Confidence            345555666666666666666666666666666666666666666666666666655543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.28  E-value=7.5e-11  Score=93.86  Aligned_cols=115  Identities=11%  Similarity=0.058  Sum_probs=92.3

Q ss_pred             hhHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284           46 PEFSETMSYFRAVYYSDER----SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW  121 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~----s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW  121 (284)
                      .+|..|...+...+.-...    .+.........+.     ..++..++.++..+| .++++++.++++|.++|.+..+|
T Consensus        31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Nla~~~~~l~-~~~~Al~~~~~al~~~p~~~ka~  104 (153)
T d2fbna1          31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE-----ISCNLNLATCYNKNK-DYPKAIDHASKVLKIDKNNVKAL  104 (153)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH-----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHH-----HHHHhhHHHHHHHhc-ccchhhhhhhccccccchhhhhh
Confidence            4566777777666543221    1223333333332     367889999999999 59999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284          122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG  168 (284)
Q Consensus       122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~  168 (284)
                      +.+|.++..+|+  +++|+.++.++++++|.|..++...+.+..+++
T Consensus       105 ~~~g~~~~~lg~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         105 YKLGVANMYFGF--LEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999  999999999999999999999999888877664

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.7e-11  Score=99.44  Aligned_cols=149  Identities=11%  Similarity=0.034  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHH
Q 023284           83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW  162 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~  162 (284)
                      ...+..+|..+...| ++++|+.+|.++|...|.....+......+..+                     ...++.+++.
T Consensus        13 a~~l~~~G~~~~~~~-~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~nla~   70 (170)
T d1p5qa1          13 STIVKERGTVYFKEG-KYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL---------------------RLASHLNLAM   70 (170)
T ss_dssp             HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH---------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhccccchHHHhhhchh---------------------HHHHHHHHHH
Confidence            344555666666666 477777777777776665444332211111110                     1235778999


Q ss_pred             HHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284          163 VLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD  242 (284)
Q Consensus       163 vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~  242 (284)
                      ++.++|++++|+.+++++|+++|.|..+|..+|.++..+|++       ++++.++.+++.++|+|+.+-..+..+....
T Consensus        71 ~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-------~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          71 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-------ELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999984       8899999999999999999987777776555


Q ss_pred             CccCCCChhhHHHHHhhh
Q 023284          243 TESWINDPRMLLSVFESF  260 (284)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~  260 (284)
                      ++.....-.+...+|+-+
T Consensus       144 ~~~~~~e~~~~~~~f~~~  161 (170)
T d1p5qa1         144 RRQLAREKKLYANMFERL  161 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            433333333344444433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-11  Score=95.21  Aligned_cols=105  Identities=16%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             HhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCChh--HHhHHHHHHHHccCcH
Q 023284           95 TLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDAKNYH--AWSYRQWVLQALGGWE  171 (284)
Q Consensus        95 ~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dpkN~~--AW~~r~~vl~~l~~~~  171 (284)
                      ..+ +++++.+.|+++|..+|.+..+.++.+++|.+.++ +.+.+++..++++++.+|.+.+  +|++.|.++..+|+++
T Consensus        11 ~~~-~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~   89 (122)
T d1nzna_          11 SVE-DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   89 (122)
T ss_dssp             HHH-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CHH-HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhH
Confidence            344 57888888888888888888888888888865332 0156788888888888887754  8888899888999999


Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          172 DELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      +|+.+++++|+++|+|..|...++.|..+
T Consensus        90 ~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          90 KALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            99999999999999998888888776544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.24  E-value=1.3e-10  Score=93.63  Aligned_cols=130  Identities=8%  Similarity=0.003  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC
Q 023284           50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY---------------TVWHFRRQIIETLHTDLQDELAFVGRIAKSN  114 (284)
Q Consensus        50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~---------------~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~  114 (284)
                      ....-.|..+.+.+...+|+..|.++|.+.|..+               .++.+++.|+..++ ++.+++.++++++.++
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~-~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR-EYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhh-hcccchhhhhhhhhcc
Confidence            3455567777777878999999999997655433               56778999999999 6999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH-HHHHHHHHHHh
Q 023284          115 SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE-DELDYCQMLLG  182 (284)
Q Consensus       115 pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~-eeL~~~~~~l~  182 (284)
                      |++..+|+.||.++..+|+  +++++.++.++++++|.|..++..++.+...++... .+-..+.++.+
T Consensus        95 p~~~~a~~~~~~~~~~l~~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            9999999999999999999  999999999999999999999999998887776553 34444444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.5e-11  Score=115.88  Aligned_cols=133  Identities=8%  Similarity=-0.095  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHH
Q 023284          100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQM  179 (284)
Q Consensus       100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~  179 (284)
                      |+.++..+.+++..+|++..+|...|.+....|+  ..+++..+.+++..+|  +.++.+.|.+....+++++|+.+|.+
T Consensus       102 Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~  177 (497)
T d1ya0a1         102 YTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH--TSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRH  177 (497)
T ss_dssp             HHHHHHHHTC---------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC--HHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5666666666777899999999999999999988  8999999999998887  47999999999999999999999999


Q ss_pred             HHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284          180 LLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT  243 (284)
Q Consensus       180 ~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~  243 (284)
                      +++++|++..+|+++|.+....++.       .+++.++.++|..+|..+.++..+..++.+..
T Consensus       178 A~~l~P~~~~~~~~Lg~~~~~~~~~-------~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         178 AAQLVPSNGQPYNQLAILASSKGDH-------LTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHCTTBSHHHHHHHHHHHHTTCH-------HHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCchHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999988874       67899999999999999999999988887543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.3e-11  Score=94.01  Aligned_cols=107  Identities=13%  Similarity=0.025  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284          121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR  200 (284)
Q Consensus       121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~  200 (284)
                      +-..|..+...|+  +++|+.+|+++|+++|.|..+|++++.++..+|+|++|+.+++++|+++|++..+|...+.++..
T Consensus         7 ~k~~G~~~~~~~~--y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKD--FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            4456777777777  88888888888888888888888888888888888888888888888888888777766655544


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284          201 SPLLGGLIAMRDSEVNFTIEAILGNPENE  229 (284)
Q Consensus       201 l~~~~~~~~~~~~el~~~~~~i~~~P~ne  229 (284)
                      +|........++++++++.+++..+|+..
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~~~~~  113 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPD  113 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence            44321111225788888888888877643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=7.6e-10  Score=97.03  Aligned_cols=183  Identities=7%  Similarity=-0.077  Sum_probs=150.9

Q ss_pred             cChhHHHHHHHHHHHHhc--------------CCCCHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHH
Q 023284           44 YKPEFSETMSYFRAVYYS--------------DERSSRSFQLTKEAIC-LNPGNYTVWHFRRQIIETLHTDLQDELAFVG  108 (284)
Q Consensus        44 ~~p~~~~a~~~~r~~~~~--------------~~~s~~aL~~~~~~L~-lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~  108 (284)
                      ..|.+.++|..+...+..              ....++|..++++++. .+|.+...|.....+....| ..+++...++
T Consensus        45 ~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~-~~~~a~~i~~  123 (308)
T d2onda1          45 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM-KYEKVHSIYN  123 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence            345666677655443321              1223688999999997 58999999999999999988 5999999999


Q ss_pred             HHHHhCCCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH-ccCcHHHHHHHHHHHhccCC
Q 023284          109 RIAKSNSKNYQ-LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA-LGGWEDELDYCQMLLGEDIF  186 (284)
Q Consensus       109 ~~l~~~pkn~~-aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~-l~~~~eeL~~~~~~l~~dp~  186 (284)
                      +++...|++.. +|...+.++...|.  ++++.+++.++++..|.+.+.|...+.+... .+..+.|...+++++..+|.
T Consensus       124 ~~l~~~~~~~~~~w~~~~~~~~~~~~--~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         124 RLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            99999999865 89999999999988  9999999999999999999999988876554 57789999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc----HHHHHH
Q 023284          187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES----PWRYLR  236 (284)
Q Consensus       187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes----aW~y~~  236 (284)
                      +...|.....++...|..       +++-..++++|...|.++.    .|....
T Consensus       202 ~~~~w~~y~~~~~~~g~~-------~~aR~~fe~ai~~~~~~~~~~~~iw~~~~  248 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNED-------NNTRVLFERVLTSGSLPPEKSGEIWARFL  248 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            999999998888888764       5567788899998876643    675443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.2e-11  Score=90.55  Aligned_cols=101  Identities=12%  Similarity=0.053  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHH-
Q 023284           84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-  162 (284)
Q Consensus        84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~-  162 (284)
                      ..+..+|..+...| ++++|+.+|+++|.++|++..+|.+++.++..+|+  +++++.+++++|+++|++..+|...+. 
T Consensus         5 ~~~k~~G~~~~~~~-~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           5 LKEKELGNDAYKKK-DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--YNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc--hHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            44556788888877 69999999999999999999999999999999999  999999999999999999887766554 


Q ss_pred             ------HHHHccCcHHHHHHHHHHHhccCCC
Q 023284          163 ------VLQALGGWEDELDYCQMLLGEDIFN  187 (284)
Q Consensus       163 ------vl~~l~~~~eeL~~~~~~l~~dp~n  187 (284)
                            ++..++.+++|++++.+++..++..
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence                  4555668899999999999888754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.4e-11  Score=91.71  Aligned_cols=103  Identities=11%  Similarity=0.061  Sum_probs=92.3

Q ss_pred             CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCCCHHHH
Q 023284           64 RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSNSKNYQ--LWHHRRWVAEKLGTGAVNKE  139 (284)
Q Consensus        64 ~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~--aW~hR~~ll~~l~~~~~~ee  139 (284)
                      ..++|.+.|.++|.++|.+..+.+..+++|...+  .++++++..+++++..+|++.+  +|++.|.++..+|+  ++++
T Consensus        14 ~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~--~~~A   91 (122)
T d1nzna_          14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--YEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh--hHHH
Confidence            3478999999999999999999999999996532  1577899999999999988754  89999999999999  9999


Q ss_pred             HHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284          140 LQFTKKMLSLDAKNYHAWSYRQWVLQALG  168 (284)
Q Consensus       140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~  168 (284)
                      +.+++++|+++|.|..|...++.+..+++
T Consensus        92 ~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999998877653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=2.4e-09  Score=93.72  Aligned_cols=184  Identities=7%  Similarity=-0.044  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-------------hCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHh
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-------------TDLQDELAFVGRIAK-SNSKNYQLWHHRRWVAEKL  131 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-------------~~~~~eL~~~~~~l~-~~pkn~~aW~hR~~ll~~l  131 (284)
                      .++..++++||...|.++.+|..-...+...+             ...+++...+++++. ..|++...|..-+.+....
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~  112 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            56888999999999999999987665554322             135788899999997 4899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCcCChh-HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhh
Q 023284          132 GTGAVNKELQFTKKMLSLDAKNYH-AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAM  210 (284)
Q Consensus       132 ~~~~~~eel~~~~~aL~~dpkN~~-AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~  210 (284)
                      |.  ++++...++++|+..|++.. +|...+.++...+..+++.+.+.++++..|.+...|...+.+.....+.      
T Consensus       113 ~~--~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~------  184 (308)
T d2onda1         113 MK--YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD------  184 (308)
T ss_dssp             TC--HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC------
T ss_pred             cc--HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC------
Confidence            98  99999999999999999876 7999999999999999999999999999999999998887765544322      


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284          211 RDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE  261 (284)
Q Consensus       211 ~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      .+.+...+.+++..+|++...|....-++...+    +..++-+.|-+++.
T Consensus       185 ~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g----~~~~aR~~fe~ai~  231 (308)
T d2onda1         185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN----EDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcC----ChHHHHHHHHHHHH
Confidence            366788899999999999999977666655443    23344444554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.9e-09  Score=92.46  Aligned_cols=178  Identities=8%  Similarity=-0.023  Sum_probs=131.8

Q ss_pred             ChhHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC
Q 023284           45 KPEFSETMSY---FRAVYYSDERSSRSFQLTKEAICLN------PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS  115 (284)
Q Consensus        45 ~p~~~~a~~~---~r~~~~~~~~s~~aL~~~~~~L~ln------P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p  115 (284)
                      ++.|..|...   -+.++...+..++|+.++.+++.+.      ++-..+|...|.+...+| ++++++.++++++.+.+
T Consensus        30 ~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~-~~~~A~~~~~~a~~~~~  108 (290)
T d1qqea_          30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-NSVNAVDSLENAIQIFT  108 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHhhHHhh
Confidence            4456555443   4556777888899999999999973      445688999999999999 69999999999998877


Q ss_pred             CC------hHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHh
Q 023284          116 KN------YQLWHHRRWVAEK-LGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLG  182 (284)
Q Consensus       116 kn------~~aW~hR~~ll~~-l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~  182 (284)
                      ++      ..++...+.++.. +|+  ++++++++.+++++.+.+      ..++...+.++..+|+|++|++.+++++.
T Consensus       109 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         109 HRGQFRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHhHhhHHHH--HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            66      5566666766644 688  999999999999875543      45588889999999999999999999999


Q ss_pred             ccCCChHH-------HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284          183 EDIFNNSA-------WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW  232 (284)
Q Consensus       183 ~dp~n~sA-------W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW  232 (284)
                      ..+.+...       +...+.+....+.       +..+...+.++++++|....++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d-------~~~A~~~~~~~~~~~~~~~~sr  236 (290)
T d1qqea_         187 SSMGNRLSQWSLKDYFLKKGLCQLAATD-------AVAAARTLQEGQSEDPNFADSR  236 (290)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTC-------HHHHHHHHHGGGCC--------
T ss_pred             hCccchhhhhhHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHhCCCccchH
Confidence            99887532       3333444334444       3667888889999999876654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.7e-10  Score=107.22  Aligned_cols=131  Identities=7%  Similarity=-0.074  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK  145 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~  145 (284)
                      +.++..+.+++.++|++..+|...|.+....+ +..+++..+.+++..+|  +.++.+.|.++...|+  +++|+.+|.+
T Consensus       103 ~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~--~~~A~~~y~~  177 (497)
T d1ya0a1         103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQT-HTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ--TSQAESYYRH  177 (497)
T ss_dssp             HHHHHHHTC--------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChhhHHHHHHhHHHHHhCC-CHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc--HHHHHHHHHH
Confidence            34555555566789999999999999999888 58899999999988876  5789999999999999  9999999999


Q ss_pred             HHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284          146 MLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS  201 (284)
Q Consensus       146 aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l  201 (284)
                      +++++|.+..+|++.|.+....|+..+|+.+|.++|..+|....|+.+.+.++.+.
T Consensus       178 A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999887754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.87  E-value=3.7e-09  Score=83.78  Aligned_cols=99  Identities=12%  Similarity=-0.020  Sum_probs=73.9

Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC----
Q 023284           90 RQIIETLHTDLQDELAFVGRIAKSNSKNY------------QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN----  153 (284)
Q Consensus        90 ~~~L~~l~~~~~~eL~~~~~~l~~~pkn~------------~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN----  153 (284)
                      +......| .+++++..|+++|.++|+..            .+|+.++.++..+|+  +++++..++++|++.|++    
T Consensus        16 g~~~~~~g-~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~--~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          16 AQRQLVAG-EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--FDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHT-CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHcC-CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc--cchhhHhhhhhhhccccccccc
Confidence            33344445 47777777777777666643            467788888888888  888888888888876653    


Q ss_pred             -------hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284          154 -------YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW  191 (284)
Q Consensus       154 -------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW  191 (284)
                             ..+++++|.++..+|++++|++++++++++.|......
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~  137 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  137 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence                   23678889999999999999999999999887665544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.78  E-value=6.9e-09  Score=82.17  Aligned_cols=118  Identities=8%  Similarity=0.008  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 023284           47 EFSETMSYFRA--VYYSDERSSRSFQLTKEAICLNPGN------------YTVWHFRRQIIETLHTDLQDELAFVGRIAK  112 (284)
Q Consensus        47 ~~~~a~~~~r~--~~~~~~~s~~aL~~~~~~L~lnP~~------------~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~  112 (284)
                      +...++.+++.  .....+..++|+..++++|.++|+.            ..+|+.++.++..+| .+++++..+++++.
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg-~~~~A~~~~~~al~   83 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC-ccchhhHhhhhhhh
Confidence            44566666633  4445566799999999999999875            468999999999999 59999999999998


Q ss_pred             hCCCC-----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284          113 SNSKN-----------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL  167 (284)
Q Consensus       113 ~~pkn-----------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l  167 (284)
                      +.|++           ..+++.+|.++..+|+  +++++.++.+++++.|+.......+..++..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~--~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~  147 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEERKGETPGKERMMEVA  147 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             cccccccccccccchhHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHhhHHhhchHHHHHHHHHHH
Confidence            76543           3467889999999999  99999999999999998887776665555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=2.3e-08  Score=86.58  Aligned_cols=176  Identities=10%  Similarity=-0.043  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHH-hhhCHHHHHHHHHHHHHhCCCC-
Q 023284           46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIET-LHTDLQDELAFVGRIAKSNSKN-  117 (284)
Q Consensus        46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~-l~~~~~~eL~~~~~~l~~~pkn-  117 (284)
                      ++...++...+.++...+..++|+.++.+++.+.+..      ..++...+.++.. ++ ++++++.++.+++.+.++. 
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHHHHhcC
Confidence            4455677788888888888899999999999987766      5667777777654 56 6999999999998875432 


Q ss_pred             -----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh-------HHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284          118 -----YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH-------AWSYRQWVLQALGGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       118 -----~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~-------AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp  185 (284)
                           ..++...+.++..+|+  +++++..+++++...+.+..       .+...+.+....+++..+...++++++++|
T Consensus       153 ~~~~~~~~~~~la~~~~~~g~--y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         153 SVALSNKCFIKCADLKALDGQ--YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             chhhhhhHHHHHHHHHHHcCh--HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                 4568888999999999  99999999999999888752       345566666778899999999999999999


Q ss_pred             CChHHHHHHH--HHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284          186 FNNSAWNQRY--FVVTRSPLLGGLIAMRDSEVNFTIEAILGNP  226 (284)
Q Consensus       186 ~n~sAW~~r~--~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P  226 (284)
                      ....+..++.  -++......+  ..-+++++..++++++++|
T Consensus       231 ~~~~sre~~~l~~l~~a~~~~d--~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         231 NFADSRESNFLKSLIDAVNEGD--SEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             -------HHHHHHHHHHHHTTC--TTTHHHHHHHHTTSSCCCH
T ss_pred             CccchHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhhcCH
Confidence            8776654432  1111111000  0114667777777666654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4e-08  Score=71.45  Aligned_cols=76  Identities=13%  Similarity=0.029  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC-------hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284          120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN-------YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN  192 (284)
Q Consensus       120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN-------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~  192 (284)
                      .++..|.+..+.|+  +.+|+..+++++++.|.+       ..++.+.|.++.++|++++|+++++++|+++|+|..|++
T Consensus         7 dc~~lG~~~~~~g~--y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           7 DSFELGKVAYTEAD--YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHCCC--HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            34556667777776  777777777777766654       345666777777777777778888888888887777777


Q ss_pred             HHHHH
Q 023284          193 QRYFV  197 (284)
Q Consensus       193 ~r~~l  197 (284)
                      +++.+
T Consensus        85 Nl~~~   89 (95)
T d1tjca_          85 NLKYF   89 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.7e-07  Score=68.03  Aligned_cols=81  Identities=15%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284           84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA  156 (284)
Q Consensus        84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~A  156 (284)
                      ..++..|.+....| ++.+|+.++++++.+.|++       ..++.+.|.++.++|+  +++|++.++++|+++|.|..|
T Consensus         6 ddc~~lG~~~~~~g-~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~--~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           6 EDSFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD--LDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC--hHHHHHHHHHHHHhCcCCHHH
Confidence            44567788888888 6888888888888876654       5678888888888888  999999999999999999999


Q ss_pred             HhHHHHHHHHc
Q 023284          157 WSYRQWVLQAL  167 (284)
Q Consensus       157 W~~r~~vl~~l  167 (284)
                      +++++.+-+.+
T Consensus        83 ~~Nl~~~~~~l   93 (95)
T d1tjca_          83 NGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88887765544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=4.8e-07  Score=76.86  Aligned_cols=137  Identities=12%  Similarity=0.043  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC------
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY-----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN------  117 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~-----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn------  117 (284)
                      .++...+..+....+..++|+.+++++|...|.+.     .++...|.++..+| ++++++..+++++...|+.      
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhcchHHH
Confidence            44555566666677888999999999999999873     58888999999999 6999999999999876543      


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh--------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284          118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY--------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN  188 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~--------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~  188 (284)
                      ..++..++.++...|+  +..++..+.+++.+.+...        .+...++.+....|+++.++.++.+++...+...
T Consensus        91 ~~~~~~~~~~~~~~~~--~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~  167 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGF--LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  167 (366)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence            3556777888888898  9999999999998654332        3556678888999999999999999999876654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=1.5e-06  Score=70.39  Aligned_cols=121  Identities=9%  Similarity=-0.117  Sum_probs=92.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 023284           54 YFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT  133 (284)
Q Consensus        54 ~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~  133 (284)
                      ..+......++.++|+..+.++|.+.+.....+......+             ........+....+|..++.++..+|+
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~-------------~~~r~~l~~~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV-------------EPFATALVEDKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTH-------------HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3444555677778999999999999987764432211111             111222334456788999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHH-------HhccCCChH
Q 023284          134 GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQML-------LGEDIFNNS  189 (284)
Q Consensus       134 ~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~-------l~~dp~n~s  189 (284)
                        +++++.++++++++||.+-.+|.+.+.++..+|++.+|+..|+++       +.++|+...
T Consensus        83 --~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          83 --ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             --HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             --chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence              999999999999999999999999999999999999999999987       456666443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.48  E-value=6e-08  Score=83.93  Aligned_cols=132  Identities=9%  Similarity=-0.055  Sum_probs=109.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284           62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ  141 (284)
Q Consensus        62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~  141 (284)
                      .+..++|+..+.++|+.+|++..++...+.++...| ++++++..++++++.+|.+..++...+.++...+.  ..+++.
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G-~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~--~~~a~~   85 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--RKDFAQ   85 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH--HHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc--cHHHHH
Confidence            355689999999999999999999999999999999 69999999999999999999999988888776554  344333


Q ss_pred             HHHH-HHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284          142 FTKK-MLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF  196 (284)
Q Consensus       142 ~~~~-aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~  196 (284)
                      -..+ ++..+|.+..++..++.+....|++++|.+.+.++.+..|.....|+.+++
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~f  141 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSF  141 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEEE
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccccCH
Confidence            2222 222456666667777888888999999999999999999999988876544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=2.6e-06  Score=68.93  Aligned_cols=134  Identities=7%  Similarity=-0.092  Sum_probs=99.0

Q ss_pred             cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284           82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ  161 (284)
Q Consensus        82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~  161 (284)
                      -..++..+|..+...| ++++++..+.+++.+.+..+..+....              --.......+.+....+|..++
T Consensus        10 ~f~~~~~~g~~~~~~g-~~e~A~~~~~~AL~l~rG~~l~~~~~~--------------~w~~~~r~~l~~~~~~a~~~la   74 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAG-RFEQASRHLSAALREWRGPVLDDLRDF--------------QFVEPFATALVEDKVLAHTAKA   74 (179)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCSSTTGGGTTS--------------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCcccccccCcch--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778888888888 699999999999999988765542211              0111223345556678999999


Q ss_pred             HHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284          162 WVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES  230 (284)
Q Consensus       162 ~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes  230 (284)
                      .++..+|++++++.+++++|+.+|.+..+|..++.++..+|+..++...|++......+-+-+.|+.+.
T Consensus        75 ~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          75 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            999999999999999999999999999999999999999999643322333333333333678888554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.32  E-value=2.6e-07  Score=79.81  Aligned_cols=127  Identities=10%  Similarity=-0.067  Sum_probs=101.8

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284           99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ  178 (284)
Q Consensus        99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~  178 (284)
                      ++++++..++++++.+|++..++...+.++...|+  +++++..++++++++|.+..++...+.++...+..++++....
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~--~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~   88 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA   88 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhh
Confidence            58999999999999999999999999999999999  9999999999999999999999998888877666555544433


Q ss_pred             HH-HhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284          179 ML-LGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY  234 (284)
Q Consensus       179 ~~-l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y  234 (284)
                      +. +..+|.+..++..++.+....+.       .+++.+.+.++.+..|+....|+-
T Consensus        89 ~~~~~~~p~~~~~~l~~a~~~~~~gd-------~~~A~~~~~~a~e~~p~~~~~~~~  138 (264)
T d1zbpa1          89 TAKVLGENEELTKSLVSFNLSMVSQD-------YEQVSELALQIEELRQEKGFLAND  138 (264)
T ss_dssp             CEECCCSCHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHCCCCCEEETT
T ss_pred             hhhcccCchHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHhcCCCCCccccc
Confidence            32 22345555555555665555555       377889999999999999887753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1e-05  Score=68.31  Aligned_cols=139  Identities=9%  Similarity=-0.070  Sum_probs=109.8

Q ss_pred             CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC--
Q 023284           81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY-----QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN--  153 (284)
Q Consensus        81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~-----~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN--  153 (284)
                      -+.++...|+.+....| ++++++.++++++...|.+.     .++...|.++...|+  +++++..+.+++++.++.  
T Consensus        10 ~~ae~~~lrA~~~~~~g-~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~--~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE--LTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhcc
Confidence            34566777899988889 69999999999999999984     478888999999999  999999999999977654  


Q ss_pred             ----hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh--------HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHH
Q 023284          154 ----YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN--------SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEA  221 (284)
Q Consensus       154 ----~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~--------sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~  221 (284)
                          ..++..++.++...+++..++..+.+++.+.+...        .+...++.+....+..       +.+..++.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~a~~~~~~~  159 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL-------DEAEASARSG  159 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcch-------hhhHHHHHHH
Confidence                35667778888899999999999999988654321        2445566777777763       5667777777


Q ss_pred             HhcCCCCc
Q 023284          222 ILGNPENE  229 (284)
Q Consensus       222 i~~~P~ne  229 (284)
                      +...+...
T Consensus       160 ~~~~~~~~  167 (366)
T d1hz4a_         160 IEVLSSYQ  167 (366)
T ss_dssp             HHHTTTSC
T ss_pred             HHHhhhhh
Confidence            77666544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=0.00012  Score=55.32  Aligned_cols=80  Identities=13%  Similarity=0.089  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCCh-hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284          118 YQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDAKNY-HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY  195 (284)
Q Consensus       118 ~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dpkN~-~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~  195 (284)
                      .++.++-+|.|-+-.. ....+++.++..+++.+|.+. .+|++.+....++|.|++|+.+++++|+++|.|.-|..-+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            5566666666655432 114567777777777777654 67777777777777777777777777777777777766555


Q ss_pred             HH
Q 023284          196 FV  197 (284)
Q Consensus       196 ~l  197 (284)
                      .|
T Consensus       115 ~I  116 (124)
T d2pqrb1         115 MV  116 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.66  E-value=0.0031  Score=51.85  Aligned_cols=200  Identities=12%  Similarity=-0.007  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---hhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284           49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL---HTDLQDELAFVGRIAKSNSKNYQLWHHRR  125 (284)
Q Consensus        49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l---~~~~~~eL~~~~~~l~~~pkn~~aW~hR~  125 (284)
                      ++++...+......+..++|++++.++...  .+..+.+..|.+....   ..++..++.++..+....  +..++..-+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            457777777777777779999999999875  5888999999888762   346777888777766544  555555555


Q ss_pred             HHHHHhC--CCCHHHHHHHHHHHHHhCc----------------------------------CChhHHhHHHHHHHHcc-
Q 023284          126 WVAEKLG--TGAVNKELQFTKKMLSLDA----------------------------------KNYHAWSYRQWVLQALG-  168 (284)
Q Consensus       126 ~ll~~l~--~~~~~eel~~~~~aL~~dp----------------------------------kN~~AW~~r~~vl~~l~-  168 (284)
                      .++....  ......++..+.++.+..+                                  .+..++++.+.++.... 
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~  157 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG  157 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence            4443321  1124555555555554433                                  23333333333333211 


Q ss_pred             ---CcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCcc
Q 023284          169 ---GWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES  245 (284)
Q Consensus       169 ---~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~  245 (284)
                         .......++..+.  ++.|..|.+..|.+...-....   .-+++++.++.++.+.  ++..+++.++.++.. +.+
T Consensus       158 ~~~~~~~~~~~~~~a~--~~g~~~A~~~lg~~y~~g~~~~---~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~-G~g  229 (265)
T d1ouva_         158 TPKDLKKALASYDKAC--DLKDSPGCFNAGNMYHHGEGAT---KNFKEALARYSKACEL--ENGGGCFNLGAMQYN-GEG  229 (265)
T ss_dssp             SCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTCSSC---CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT-TSS
T ss_pred             cccccccchhhhhccc--cccccccccchhhhcccCcccc---cchhhhhhhHhhhhcc--cCHHHHHHHHHHHHc-CCC
Confidence               1223333444433  3455666666665544311100   0146677777777665  456676665555553 344


Q ss_pred             CC-CChhhHHHHHhhh
Q 023284          246 WI-NDPRMLLSVFESF  260 (284)
Q Consensus       246 ~~-~~~~~~~~~~~~~  260 (284)
                      +. +...+..-+.++.
T Consensus       230 ~~~n~~~A~~~~~kAa  245 (265)
T d1ouva_         230 VTRNEKQAIENFKKGC  245 (265)
T ss_dssp             SSCCSTTHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHH
Confidence            43 3445555555543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=0.00051  Score=51.78  Aligned_cols=83  Identities=10%  Similarity=0.010  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284           83 YTVWHFRRQIIETLH--TDLQDELAFVGRIAKSNSKNY-QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY  159 (284)
Q Consensus        83 ~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~-~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~  159 (284)
                      .++.+.-+|+|.+-.  .+.++++.+++.++..+|.+. .+|++.+....++|+  +++|+.+++++|+++|.|..|..-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd--y~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE--YSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHccCCCcHHHHHH
Confidence            456666677776432  246788888888888888764 788888888888888  889999999999999998888877


Q ss_pred             HHHHHHHc
Q 023284          160 RQWVLQAL  167 (284)
Q Consensus       160 r~~vl~~l  167 (284)
                      +..+-.++
T Consensus       113 ~~~Ie~~~  120 (124)
T d2pqrb1         113 KSMVEDKI  120 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.88  E-value=0.06  Score=43.63  Aligned_cols=99  Identities=8%  Similarity=-0.068  Sum_probs=74.1

Q ss_pred             cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284           82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG--TGAVNKELQFTKKMLSLDAKNYHAWSY  159 (284)
Q Consensus        82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~--~~~~~eel~~~~~aL~~dpkN~~AW~~  159 (284)
                      |+.+|+..|..+...+ ++++|++++.++...  ++..+..+.|.++..-.  ...+..++..+..+...+  +..++..
T Consensus         1 ~p~~~~~lG~~~~~~~-d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~   75 (265)
T d1ouva_           1 DPKELVGLGAKSYKEK-DFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL   75 (265)
T ss_dssp             CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhc
Confidence            4678999998888877 799999999999765  68999999999987621  123888888888877655  6667776


Q ss_pred             HHHHHHHc----cCcHHHHHHHHHHHhccC
Q 023284          160 RQWVLQAL----GGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       160 r~~vl~~l----~~~~eeL~~~~~~l~~dp  185 (284)
                      .+.++...    ...+.++..+.++++..+
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhhh
Confidence            66665542    245677888888776544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.48  E-value=0.56  Score=33.91  Aligned_cols=111  Identities=10%  Similarity=-0.035  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-C-CCCHHHHHHHH
Q 023284           66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL-G-TGAVNKELQFT  143 (284)
Q Consensus        66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l-~-~~~~~eel~~~  143 (284)
                      ++|+.++.++...+  +..+....+.   ....+.++++.++.++...  .+..+.+..+.++..- + .....+++.++
T Consensus        10 ~~A~~~~~kaa~~g--~~~a~~~l~~---~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~   82 (133)
T d1klxa_          10 KKAIQYYVKACELN--EMFGCLSLVS---NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHTT--CTTHHHHHHT---CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC--Chhhhhhhcc---ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence            46777777777664  3344433332   1223678888888888764  5778888888776541 1 12378889999


Q ss_pred             HHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccC
Q 023284          144 KKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDI  185 (284)
Q Consensus       144 ~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp  185 (284)
                      .++.+.  .+..|-++.+.++.+    -.+.++|+.++.++.+...
T Consensus        83 ~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          83 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            998765  567777777777665    2357888899988887643

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.93  E-value=1.1  Score=32.20  Aligned_cols=116  Identities=9%  Similarity=-0.046  Sum_probs=81.1

Q ss_pred             hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHH
Q 023284           98 TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDE  173 (284)
Q Consensus        98 ~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~ee  173 (284)
                      +++++++.++.++...+  +..+..+.+.    ......++++.++.++.+.  .|..+.+..+.++..    -.+.++|
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~----~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS----NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT----CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc----ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHH
Confidence            36889999999998875  3444443332    1112388999999998875  688899998887764    2356899


Q ss_pred             HHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284          174 LDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP  226 (284)
Q Consensus       174 L~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P  226 (284)
                      ++++.++.+.  .+..|....+.+...-....   .-.++++.++.++.+...
T Consensus        79 ~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~---~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGL--NDQDGCLILGYKQYAGKGVV---KNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC---CCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhcc--CcchHHHHHHHHHHcCCccC---CCHHHHHHHHHHHHHCCC
Confidence            9999999875  67788888888765421110   014678899998876543