Citrus Sinensis ID: 023309

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MDSLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEccccccHHHHHHcccHHHHccccccccccccccccccccccEEEEccccccccccccEEEEcccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHccccccccccEEEEEEEEEEcccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccEEEEEEEccccccccccccccEEEEccccccEEEEEEEccccccccEEEEEEccHHHHcccEEEEEccHHHHcccccccccccccccccccccccEcccHHHHHHcccccEEEcccccEEEEccccEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHccccccccEEEEEEEEcccEEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MDSLSLYQVVEIVDRyetdcipvanrtdkvAFIQSNASKTCTRQITvtkhmkrpvYVYYQLDNFYQNHRRYVKsrndeqlkkrsktsetsqcepedttpdgkpivpcgliawslfndtytfsrnkrqltvnkngiawksdrdhkfgkevfpsnfqngtliggahlnesiplskqeDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILennyntysfsgKKKLVLSTTswlggkndFLGIAYLTVGGLCFFLALSFTIVYlvkprrlgdpsylswnrnpggh
Flexible Loop (DISEMBL)
MDSLSLYQVVEIVDRyetdcipvanrtdkvafiqsnasktctrqitvtkhmkrpVYVYYQLDNFYQNHRRYVKsrndeqlkkrsktsetsqcepedttpdgkpiVPCGLIAWSLFNDTYTfsrnkrqltvnkngiawksdrdHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKprrlgdpsylswnrnpggh
Low Complexity Region (SEG)
MDSLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH
Disordered region (IsUnstruct)
****SLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYV******************************PIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYL*********
Disordered Region (DISOPRED)
*DSLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYL**N******
Disordered Region (DISEMBL)
MDSLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKS*************************DGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH
Disordered Region (DISPRO)
****SLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLG*PS***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q9SLK2	349	ALA-interacting subunit 3	yes	no	0.968	0.787	0.739	1e-121
Q9LTW0	350	ALA-interacting subunit 1	no	no	0.968	0.785	0.724	1e-119
Q8L8W0	350	ALA-interacting subunit 5	no	no	0.964	0.782	0.72	1e-118
Q9SA35	336	Putative ALA-interacting	no	no	0.964	0.815	0.709	1e-117
Q67YS6	343	Putative ALA-interacting	no	no	0.940	0.778	0.606	6e-94
Q5F362	372	Cell cycle control protei	yes	no	0.781	0.596	0.444	2e-44
Q96WW4	371	Invasion protein 1 OS=Sch	yes	no	0.873	0.668	0.366	4e-42
Q1MTQ5	396	Meiotically up-regulated	no	no	0.838	0.601	0.393	7e-41
Q8VEK0	364	Cell cycle control protei	yes	no	0.785	0.612	0.412	3e-40
Q5R6C0	361	Cell cycle control protei	no	no	0.774	0.609	0.405	4e-40

>sp|Q9SLK2|ALIS3_ARATH ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/276 (73%), Positives = 229/276 (82%), Gaps = 1/276 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           VVEIVDRY+T+CIP   RT+KVA+IQ +  K C R + VTK MK+P+YVYYQL+NFYQNH
Sbjct: 75  VVEIVDRYDTECIPAPARTNKVAYIQGDGDKVCNRDLKVTKRMKQPIYVYYQLENFYQNH 134

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYVKSR+D QL+     ++ S C+PED    G+PIVPCGLIAWSLFNDTY  SRN   L
Sbjct: 135 RRYVKSRSDSQLRSTKYENQISACKPEDDV-GGQPIVPCGLIAWSLFNDTYALSRNNVSL 193

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
            VNK GIAWKSD++HKFG +VFP NFQ G + GGA L+  IPLS+QEDLIVWMRTAALPT
Sbjct: 194 AVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPT 253

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKIE DLE  D I V L NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTVG
Sbjct: 254 FRKLYGKIESDLEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVG 313

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           G+CF LAL+FTI+YLVKPRRLGDPSYLSWNRNPGG 
Sbjct: 314 GICFILALAFTIMYLVKPRRLGDPSYLSWNRNPGGR 349

Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTW0|ALIS1_ARATH ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1

 Score =  428 bits (1100), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/276 (72%), Positives = 232/276 (84%), Gaps = 1/276 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           VVEIVDRY++ CIP+++R +KVA+IQ   +K+CTR + V K MK+P+YVYYQL+NFYQNH
Sbjct: 76  VVEIVDRYDSACIPLSDRANKVAYIQGTGNKSCTRTLIVPKRMKQPIYVYYQLENFYQNH 135

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYVKSR+D QL+     ++   C+PED    G+PIVPCGLIAWSLFNDTY  SRN + L
Sbjct: 136 RRYVKSRSDSQLRSVKDENQIDACKPEDDF-GGQPIVPCGLIAWSLFNDTYVLSRNNQGL 194

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
           TVNK GIAWKSD++HKFGK VFP NFQ G L GGA L+ + PLS QEDLIVWMRTAALPT
Sbjct: 195 TVNKKGIAWKSDKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPT 254

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKIE DLE+ + I V L+NNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG
Sbjct: 255 FRKLYGKIESDLEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 314

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           G+CF LAL+FT++YLVKPRRLGDP+YLSWNR PGG 
Sbjct: 315 GICFVLALAFTVMYLVKPRRLGDPTYLSWNRIPGGR 350

Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8W0|ALIS5_ARATH ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/275 (72%), Positives = 227/275 (82%), Gaps = 1/275 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           VVEIVDRY+TDCIP ++R + VA+IQ    K C R ITVTK MK PVYVYYQL+NFYQNH
Sbjct: 75  VVEIVDRYDTDCIPTSSRNNMVAYIQGEGDKICKRTITVTKAMKHPVYVYYQLENFYQNH 134

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYVKSRND QL+   +  +   C PED    G+PIVPCGL+AWSLFNDTY+FSRN +QL
Sbjct: 135 RRYVKSRNDAQLRSPKEEHDVKTCAPEDNV-GGEPIVPCGLVAWSLFNDTYSFSRNSQQL 193

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
            VNK GI+WKSDR++KFGK VFP NFQ G  IGG  LN S PLS+QEDLIVWMRTAALPT
Sbjct: 194 LVNKKGISWKSDRENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPT 253

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKIE DL   D I V+L+NNYNTYSF+G+KKLVLSTTSWLGG+NDFLGIAYLTVG
Sbjct: 254 FRKLYGKIETDLHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLGIAYLTVG 313

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 283
            +C FLA++F ++YLVKPR+LGDPSYLSWNR+ GG
Sbjct: 314 SICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSAGG 348

Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA35|ALIS4_ARATH Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=2

 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/275 (70%), Positives = 229/275 (83%), Gaps = 1/275 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           V+EIVDRY+TDCIP+++R +KV +IQ    K C R ITVTK MK PVYVYYQL+N+YQNH
Sbjct: 61  VIEIVDRYDTDCIPLSSRDNKVRYIQGLEDKRCNRTITVTKTMKNPVYVYYQLENYYQNH 120

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYVKSR D QL+      ET  C PEDT   G+PIVPCGL+AWSLFNDTY F+RN ++L
Sbjct: 121 RRYVKSRQDGQLRSPKDEHETKSCAPEDTL-GGQPIVPCGLVAWSLFNDTYDFTRNNQKL 179

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
            VNK  I+WKSDR+ KFGK VFP NFQ G+LIGG  L++ IPLS+QEDLIVWMRTAALPT
Sbjct: 180 PVNKKDISWKSDRESKFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPT 239

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKI+ DL+  D I V+L+NNYNTYSF+GKKKLVLSTTSWLGG+NDFLGIAYLTVG
Sbjct: 240 FRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVG 299

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 283
            +C FLA+SF+++YL KPR+LGDPSYLSWNR+ GG
Sbjct: 300 SICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q67YS6|ALIS2_ARATH Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1

 Score =  343 bits (881), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 165/272 (60%), Positives = 212/272 (77%), Gaps = 5/272 (1%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFI-QSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQN 67
            +EI+DRY+ +CIP   RT+K+ +I  S+  K CTR + V K+MK P+++YYQLDN+YQN
Sbjct: 71  AIEIIDRYDVECIPEEYRTNKLLYITDSSIPKNCTRYLKVQKYMKAPIFIYYQLDNYYQN 130

Query: 68  HRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ 127
           HRRYVKSR+D+QL    + S TS CEPE+++ +G PIVPCGLIAWS+FNDT+TFSR + +
Sbjct: 131 HRRYVKSRSDQQLLHGLEYSHTSSCEPEESS-NGLPIVPCGLIAWSMFNDTFTFSRERTK 189

Query: 128 LTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALP 187
           L V++N IAWKSDR+HKFGK V+P NFQNGTLIGGA L+  IPLS QED IVWMR AAL 
Sbjct: 190 LNVSRNNIAWKSDREHKFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALL 249

Query: 188 TFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTV 247
           +FRKLYG+IE DLE   +++V L NNYNTYSFSG+KKL+LST++WLGG+NDFLGI YL V
Sbjct: 250 SFRKLYGRIEEDLEPGKVVEVNLMNNYNTYSFSGQKKLILSTSNWLGGRNDFLGITYLVV 309

Query: 248 GGLCFFLALSFTIVYLVKPRRLGDPSYLSWNR 279
           G     +++ F +++L  PR  GD    SWN+
Sbjct: 310 GSSSIVISIIFMLLHLKNPRPYGDN---SWNK 338

Arabidopsis thaliana (taxid: 3702)

>sp|Q5F362|CC50A_CHICK Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/245 (44%), Positives = 143/245 (58%), Gaps = 23/245 (9%)

Query: 40  TCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDT 97
           TCT   T+    +  V++YY L NFYQNHRRYVKSR+D QL     S  + + +CEP  T
Sbjct: 115 TCTINFTLEHSFESNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDNSSLLNPSKECEPYRT 174

Query: 98  TPDGKPIVPCGLIAWSLFNDT---YTFSRNKR-QLTVNKNGIAWKSDRDHKF----GKEV 149
             D KPI PCG IA S+FNDT   Y    + R  +T+ K GIAW +D++ KF    G   
Sbjct: 175 NED-KPIAPCGAIANSMFNDTLELYHIENDTRTAITLIKKGIAWWTDKNVKFRNPKGDGN 233

Query: 150 FPSNFQNGT----LIGGAHLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKIEVDLEE 202
             + FQ  T         ++ +S P +     ED IVWMRTAALPTFRKLY  IE     
Sbjct: 234 LTALFQGTTKPVNWPKPVYMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSNL 293

Query: 203 NDII-----DVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALS 257
              +      + +  NY  +SF G+K+++LST SW+GGKN FLGIAY+TVG +CFFL + 
Sbjct: 294 QPTLQAGKYSLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITVGSICFFLGVV 353

Query: 258 FTIVY 262
             I++
Sbjct: 354 LLIIH 358

Gallus gallus (taxid: 9031)

>sp|Q96WW4|IVN1_SCHPO Invasion protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ivn1 PE=3 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/270 (36%), Positives = 146/270 (54%), Gaps = 22/270 (8%)

Query: 30  VAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSET 89
           V  +  ++   CT +  + + M  PV+ +Y+L NFYQNHRRY  S +  QL   ++T   
Sbjct: 100 VTAMWKSSGDVCTLRFQIPEEMTSPVFAFYRLKNFYQNHRRYTVSADMFQLLGEARTVAQ 159

Query: 90  SQ----CEPEDTTPDGKPIVPCGLIAWSLFNDTYTF--------SRNKRQL-TVNKNGIA 136
            +    C+P +   +GKP  PCG+IA SLFND+Y+         S N   L  +  NG A
Sbjct: 160 LKSYGFCKPLEANEEGKPYYPCGIIANSLFNDSYSSLLRYESFDSSNSLGLYNMTTNGTA 219

Query: 137 WKSDRD------HKFGKEVFPSNFQNGTLIGGAHLNESIP-LSKQEDLIVWMRTAALPTF 189
           W  DR+      +   + V P N+    +    + +++IP +S  +   +WMR AALPTF
Sbjct: 220 WPEDRERYKKTKYNASQIVPPPNW--AKMFPNGYTDDNIPDVSTWDAFQIWMRAAALPTF 277

Query: 190 RKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGG 249
            KL  +      +  I ++ +  N+    + G K ++ STTS +GGKN FLGI Y  +GG
Sbjct: 278 SKLALRNVTTALQPGIYEMNITYNFPVTEYKGTKTIMFSTTSVIGGKNYFLGILYFVIGG 337

Query: 250 LCFFLALSFTIVYLVKPRRLGDPSYLSWNR 279
           LC    +  +I  L+KPRR+GDP YLSWNR
Sbjct: 338 LCAASGVILSIACLIKPRRVGDPRYLSWNR 367

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q1MTQ5|MUG89_SCHPO Meiotically up-regulated gene 89 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug89 PE=1 SV=1

 Score =  167 bits (423), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/249 (39%), Positives = 140/249 (56%), Gaps = 11/249 (4%)

Query: 41  CTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQ---CEPEDT 97
           C  + TV   +K P+++YY+L NF+QNHRRY KS +++QL+  + T++  +   C P + 
Sbjct: 134 CIIRFTVPSVLKAPIFIYYRLTNFFQNHRRYAKSVDEKQLQGVALTADEVKGGNCFPLEV 193

Query: 98  TPDGKPIVPCGLIAWSLFNDTYTFSR---NKRQLTVNKNGIAWKSDRDHKFGKEVFPSNF 154
             D KP  PCGLIA SLFNDT++  R   +    T +   IAW SD+         P + 
Sbjct: 194 NEDDKPYYPCGLIANSLFNDTFSSLRLLDDNSVYTFSTKNIAWASDKRRFLKTNYSPDDV 253

Query: 155 Q---NGTL-IGGAHLNESIP-LSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVI 209
               N  L     +   ++P LS  E+L VWMRTA LPTF KL  + + D       ++ 
Sbjct: 254 APPPNWVLRYPDGYTESNMPDLSTMENLQVWMRTAGLPTFSKLAMRNDNDDIFPGTYEIK 313

Query: 210 LENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRL 269
           +   +   SF G K LVL+T S LGGKN FLGIAY+ V  +C  L   FT+ + ++PR+L
Sbjct: 314 IGLFFPVKSFDGTKSLVLTTRSVLGGKNPFLGIAYIVVSAVCVVLGTVFTLRHFIRPRKL 373

Query: 270 GDPSYLSWN 278
            D  YL+W+
Sbjct: 374 ADHRYLNWD 382

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8VEK0|CC50A_MOUSE Cell cycle control protein 50A OS=Mus musculus GN=Tmem30a PE=1 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/250 (41%), Positives = 136/250 (54%), Gaps = 27/250 (10%)

Query: 38  SKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPE 95
           S  CT   T+ +  +  V++YY L NFYQNHRRYVKSR+D QL     +  + + +CEP 
Sbjct: 101 SCACTINFTLKQSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPY 160

Query: 96  DTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ-------LTVNKNGIAWKSDRDHKF--- 145
               D +PI PCG IA S+FNDT        +       + + K GIAW +D++ KF   
Sbjct: 161 RRNED-RPIAPCGAIANSMFNDTLELYLVANESDPKPIPIPLKKKGIAWWTDKNVKFRNP 219

Query: 146 -GKEVFPSNFQNGTLIGGAHL--------NESIPLSKQEDLIVWMRTAALPTFRKLYGKI 196
            GKE     F++       H         +ES      ED IVWMRTAALPTFRKLY  I
Sbjct: 220 PGKESLEEKFKDTIKPVNWHKAVYELDPEDESNNGFINEDFIVWMRTAALPTFRKLYRLI 279

Query: 197 EV--DLEENDIIDVILEN---NYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLC 251
           E   DL           N   NY  +SF G+K+++LST SW+GGKN FLGIAY+T+G + 
Sbjct: 280 ERRDDLHPTLPAGQYFLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITIGSIS 339

Query: 252 FFLALSFTIV 261
           F L +   ++
Sbjct: 340 FLLGVVLLVI 349

Mus musculus (taxid: 10090)

>sp|Q5R6C0|CC50A_PONAB Cell cycle control protein 50A OS=Pongo abelii GN=TMEM30A PE=2 SV=1

 Score =  165 bits (417), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 135/244 (55%), Gaps = 24/244 (9%)

Query: 41  CTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTT 98
           CT   T+ K  +  V++YY L NFYQNHRRYVKSR+D QL   S    + + +CEP    
Sbjct: 104 CTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRN 163

Query: 99  PDGKPIVPCGLIAWSLFNDTYTF-----SRNKRQLTVNKNGIAWKSDRDHKFG------- 146
            D KPI PCG IA S+FNDT              + + K GIAW +D++ KF        
Sbjct: 164 ED-KPIAPCGAIANSMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDN 222

Query: 147 -KEVFPSNFQNGTLIGGAHLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKIEVDLEE 202
            KE F    +    +   ++ +S P +     ED IVWMRTAALPTFRKLY  IE   + 
Sbjct: 223 LKERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDL 282

Query: 203 NDII-----DVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALS 257
           +  +      + +  NY  + F G+K+++LST SW+GGKN FLGIAY+ VG + F L + 
Sbjct: 283 HPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVV 342

Query: 258 FTIV 261
             ++
Sbjct: 343 LLVI 346

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
225462291	349	PREDICTED: ALA-interacting subunit 3 [Vi	0.968	0.787	0.793	1e-128
388521419	343	unknown [Lotus japonicus]	0.968	0.801	0.771	1e-127
449444288	343	PREDICTED: ALA-interacting subunit 3-lik	0.968	0.801	0.768	1e-127
356557044	344	PREDICTED: ALA-interacting subunit 3-lik	0.968	0.799	0.779	1e-125
356556656	344	PREDICTED: ALA-interacting subunit 3-lik	0.982	0.811	0.758	1e-125
356525734	344	PREDICTED: ALA-interacting subunit 3-lik	0.964	0.796	0.775	1e-123
363807744	344	uncharacterized protein LOC100796102 [Gl	0.982	0.811	0.736	1e-123
255550745	350	conserved hypothetical protein [Ricinus	0.968	0.785	0.761	1e-122
297853368	349	LEM3 (ligand-effect modulator 3) family	0.968	0.787	0.75	1e-121
224098834	350	predicted protein [Populus trichocarpa]	0.971	0.788	0.721	1e-119

>gi|225462291|ref|XP_002265244.1| PREDICTED: ALA-interacting subunit 3 [Vitis vinifera] gi|297736110|emb|CBI24148.3| unnamed protein product [Vitis vinifera]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/276 (79%), Positives = 242/276 (87%), Gaps = 1/276 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           VVEIVDRYETDCIP   R DKV +IQ   +K C R +TV K MK+P+YVYYQLDNFYQNH
Sbjct: 75  VVEIVDRYETDCIPEEFRNDKVNYIQKPGNKPCNRTLTVPKKMKQPIYVYYQLDNFYQNH 134

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYVKSRNDEQL+  +  +ETS C+PED   +G  IVPCGLIAWSLFNDTY FSRN  QL
Sbjct: 135 RRYVKSRNDEQLRSGNSANETSDCKPEDYA-NGAVIVPCGLIAWSLFNDTYNFSRNNEQL 193

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
           ++NK GI+WKSDR+HKFGK+V+P NFQNGTLIGGA LNESIPLS+QEDLIVWMRTAALPT
Sbjct: 194 SLNKKGISWKSDREHKFGKDVYPKNFQNGTLIGGATLNESIPLSEQEDLIVWMRTAALPT 253

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKIEVDL+ ND I V LENNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTVG
Sbjct: 254 FRKLYGKIEVDLQINDTIQVSLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVG 313

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           G+C FLA++FT+VYLVKPRRLGDPSYLSWNRNPGGH
Sbjct: 314 GICIFLAMAFTVVYLVKPRRLGDPSYLSWNRNPGGH 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521419|gb|AFK48771.1| unknown [Lotus japonicus]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/276 (77%), Positives = 244/276 (88%), Gaps = 1/276 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           VVEI+ RYE DC+P    +D+V +IQS+A KTCTR+I V K MK P+YVYYQLDNFYQNH
Sbjct: 69  VVEIIHRYEADCVPGNWSSDEVGYIQSSADKTCTREIHVEKRMKSPIYVYYQLDNFYQNH 128

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYVKSRNDEQL+  SK + TS C+PED   +G PI+PCGLIAWS+FNDTY+FSRN   L
Sbjct: 129 RRYVKSRNDEQLRDSSKANSTSGCKPEDYV-NGVPILPCGLIAWSMFNDTYSFSRNNNNL 187

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
           TVNK GI+WKSDR+HKFG +VFP NFQNGT+IGGAHLNE+IPLS+QEDLIVWMRTAALPT
Sbjct: 188 TVNKKGISWKSDREHKFGDDVFPKNFQNGTIIGGAHLNETIPLSEQEDLIVWMRTAALPT 247

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKIE+DLE+ D+I V+L+NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTVG
Sbjct: 248 FRKLYGKIEMDLEKGDVIKVVLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVG 307

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           GL FFL++ FTIVY V+PR+LGDPSYLSWNRNPGGH
Sbjct: 308 GLSFFLSMVFTIVYFVEPRQLGDPSYLSWNRNPGGH 343

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444288|ref|XP_004139907.1| PREDICTED: ALA-interacting subunit 3-like [Cucumis sativus] gi|449475853|ref|XP_004154570.1| PREDICTED: ALA-interacting subunit 3-like [Cucumis sativus]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/276 (76%), Positives = 243/276 (88%), Gaps = 1/276 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           VVEI+DRYET+CIP   R+DKV FIQ  A+K C R ITV K MK+P+YVYYQLDNFYQNH
Sbjct: 69  VVEIIDRYETECIPERFRSDKVGFIQGTANKICRRNITVPKRMKQPIYVYYQLDNFYQNH 128

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYV+SR+D+QL+      +TS C+PED   +G+P+VPCGLIAWSLFNDTY F+ NK+Q+
Sbjct: 129 RRYVQSRSDKQLRDPGSERDTSSCKPEDNW-NGQPVVPCGLIAWSLFNDTYNFTLNKKQV 187

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
            +NK GI+WKSDR+HKFGK VFP NFQ G + GG  LNES+PLS+QEDLIVWMRTAALPT
Sbjct: 188 AINKVGISWKSDREHKFGKNVFPKNFQKGNITGGKKLNESVPLSQQEDLIVWMRTAALPT 247

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKIEVDLE+ND+IDV+LENNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTVG
Sbjct: 248 FRKLYGKIEVDLEKNDVIDVVLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVG 307

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           GLCFFLA++FT+VYLVKPRRLGDPSYLSWNRNP GH
Sbjct: 308 GLCFFLAMAFTVVYLVKPRRLGDPSYLSWNRNPSGH 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557044|ref|XP_003546828.1| PREDICTED: ALA-interacting subunit 3-like [Glycine max]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/277 (77%), Positives = 240/277 (86%), Gaps = 2/277 (0%)

Query: 8   QVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQN 67
           +VVEIV RYE+ CIP    TDKVA+IQS A KTC   + V KHMK P+YVYYQLDNFYQN
Sbjct: 70  KVVEIVFRYESTCIP-HEVTDKVAYIQSPADKTCKISLPVDKHMKSPIYVYYQLDNFYQN 128

Query: 68  HRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ 127
           HRRYVKSR+DEQL+ R + + TS C PED   +GK IVPCGLIAWSLFNDTY+FSR+ + 
Sbjct: 129 HRRYVKSRSDEQLRDRREENSTSACNPEDIA-NGKAIVPCGLIAWSLFNDTYSFSRDNKN 187

Query: 128 LTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALP 187
           LTVNKNGI+WKSDR+HKFGK+VFP NFQ+  + GGA LNESIPLSKQEDLIVWMRTAALP
Sbjct: 188 LTVNKNGISWKSDREHKFGKDVFPKNFQSSAIRGGASLNESIPLSKQEDLIVWMRTAALP 247

Query: 188 TFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTV 247
           TFRKLYGKIEVDL   D I+V L+NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTV
Sbjct: 248 TFRKLYGKIEVDLNAGDQINVTLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTV 307

Query: 248 GGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           GGLCFFLAL+FT+VY VKPR+LGDPSYLSWNRNPGGH
Sbjct: 308 GGLCFFLALAFTVVYFVKPRQLGDPSYLSWNRNPGGH 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556656|ref|XP_003546639.1| PREDICTED: ALA-interacting subunit 3-like [Glycine max]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/281 (75%), Positives = 244/281 (86%), Gaps = 2/281 (0%)

Query: 4   LSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDN 63
           ++ + VVEI+DRY+  CIP +N TDKVA+IQ+   K C RQ+TV K MK P+YVYYQLDN
Sbjct: 66  IASHDVVEIIDRYDLRCIP-SNVTDKVAYIQTPGEKQCNRQLTVDKRMKSPIYVYYQLDN 124

Query: 64  FYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSR 123
           FYQNHRRYVKSRNDEQL+   K +  S CEPE+   +GK I+PCGLIAWSLFNDTY+FSR
Sbjct: 125 FYQNHRRYVKSRNDEQLRDSGKANSVSGCEPENNA-NGKAILPCGLIAWSLFNDTYSFSR 183

Query: 124 NKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRT 183
           N + LTVNK  I+WKSDRDHKFG +VFP NFQNG++IGG  LNESIPLS+QEDLIVWMRT
Sbjct: 184 NSKNLTVNKKDISWKSDRDHKFGSDVFPKNFQNGSIIGGGSLNESIPLSEQEDLIVWMRT 243

Query: 184 AALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIA 243
           AALPTFRKLYGKIEVDLE+ D+I+V L NNYNTYSF+GKKKLVLSTTS+LGGKNDFLGIA
Sbjct: 244 AALPTFRKLYGKIEVDLEKGDVINVNLHNNYNTYSFNGKKKLVLSTTSFLGGKNDFLGIA 303

Query: 244 YLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           YLTVGGL FFL+++FTIVYLVKPR+LGDPSYLSWNRNPGGH
Sbjct: 304 YLTVGGLSFFLSMAFTIVYLVKPRQLGDPSYLSWNRNPGGH 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525734|ref|XP_003531478.1| PREDICTED: ALA-interacting subunit 3-like [Glycine max]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/276 (77%), Positives = 238/276 (86%), Gaps = 2/276 (0%)

Query: 8   QVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQN 67
           +VVEIV RYE+ CIP    TDKVA+IQS A KTC   + V KHMK P+YVYYQLDNFYQN
Sbjct: 70  KVVEIVSRYESTCIP-DGVTDKVAYIQSPADKTCHISLPVHKHMKSPIYVYYQLDNFYQN 128

Query: 68  HRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ 127
           HRRYVKSR+DEQL+   + + T+ C+PED   +GK IVPCGLIAWSLFNDTY+FSR+ + 
Sbjct: 129 HRRYVKSRSDEQLRDHREENSTNACKPEDIA-NGKAIVPCGLIAWSLFNDTYSFSRDNKN 187

Query: 128 LTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALP 187
           LTVNKNGI+WKSDR+HKFGK+VFP NFQ+  + GGA LN SIPLSKQEDLIVWMRTAALP
Sbjct: 188 LTVNKNGISWKSDREHKFGKDVFPKNFQSSAIRGGATLNVSIPLSKQEDLIVWMRTAALP 247

Query: 188 TFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTV 247
           TFRKLYGKIEVDL E D I V L+NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTV
Sbjct: 248 TFRKLYGKIEVDLNEGDNITVTLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTV 307

Query: 248 GGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 283
           GGLCFFLAL+FTIVY VKPR+LGDPSYLSWNRNPGG
Sbjct: 308 GGLCFFLALAFTIVYFVKPRQLGDPSYLSWNRNPGG 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807744|ref|NP_001242684.1| uncharacterized protein LOC100796102 [Glycine max] gi|255635427|gb|ACU18066.1| unknown [Glycine max]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/281 (73%), Positives = 241/281 (85%), Gaps = 2/281 (0%)

Query: 4   LSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDN 63
           ++ + VVEI+DRY++ CIP +N TDKVA+IQ+   K C RQ+TV K MK P+YVYYQLDN
Sbjct: 66  IASHDVVEIIDRYDSHCIP-SNVTDKVAYIQTPGEKPCNRQLTVEKRMKSPIYVYYQLDN 124

Query: 64  FYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSR 123
           FYQNHRRYVKSRND+QL+   K S  S CEPE+   +G  I+PCGLIAWSLFNDTY+FSR
Sbjct: 125 FYQNHRRYVKSRNDDQLRDSGKASSVSGCEPENNV-NGMAILPCGLIAWSLFNDTYSFSR 183

Query: 124 NKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRT 183
           N   LTVNK GI+WKSDRDHKFG +VFP NFQNG +IGG  L+E++PLS+ EDLIVWMRT
Sbjct: 184 NSNNLTVNKTGISWKSDRDHKFGSDVFPKNFQNGPIIGGGGLDENVPLSQHEDLIVWMRT 243

Query: 184 AALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIA 243
           AALPTFRKLYGKIEVDLE+ D+I+V L NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIA
Sbjct: 244 AALPTFRKLYGKIEVDLEKGDVINVNLHNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIA 303

Query: 244 YLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           YLTVGGL FFL+++FT+VYLVK R+LGDPSYLSWNR+PGGH
Sbjct: 304 YLTVGGLSFFLSMAFTVVYLVKSRQLGDPSYLSWNRSPGGH 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550745|ref|XP_002516421.1| conserved hypothetical protein [Ricinus communis] gi|223544456|gb|EEF45976.1| conserved hypothetical protein [Ricinus communis]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/277 (76%), Positives = 236/277 (85%), Gaps = 2/277 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQS-NASKTCTRQITVTKHMKRPVYVYYQLDNFYQN 67
           VVEI+DRYET+CIP  NRTDKV +IQS +  K C R I VTK MK+P+YVYYQLDNFYQN
Sbjct: 75  VVEIIDRYETECIPAQNRTDKVGYIQSPDTDKRCNRTIRVTKRMKQPIYVYYQLDNFYQN 134

Query: 68  HRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ 127
           HRRYVKSR+DEQL+  S  +ETS C+PEDT  +G  IVPCGLIAWSLFNDTY+FS N  +
Sbjct: 135 HRRYVKSRSDEQLRSLSSENETSNCKPEDTV-NGIAIVPCGLIAWSLFNDTYSFSLNSME 193

Query: 128 LTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALP 187
           L VNK  I+WKSDRDHKFGK+VFP NFQ G L GGA LN S PLS+QEDLIVWMRTAALP
Sbjct: 194 LQVNKKDISWKSDRDHKFGKDVFPKNFQMGDLRGGATLNTSKPLSEQEDLIVWMRTAALP 253

Query: 188 TFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTV 247
           TFRKLYGKIE DL+ ND + + L+NNYNTYSF GKKKLVLSTT+WLGGKNDFLGIAYLTV
Sbjct: 254 TFRKLYGKIEQDLQPNDELHITLQNNYNTYSFDGKKKLVLSTTTWLGGKNDFLGIAYLTV 313

Query: 248 GGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           GG+CFFLA+SFT+VYL+KPRRLGDPSYLSWNR PGG 
Sbjct: 314 GGICFFLAMSFTVVYLIKPRRLGDPSYLSWNRTPGGR 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853368|ref|XP_002894565.1| LEM3 (ligand-effect modulator 3) family protein [Arabidopsis lyrata subsp. lyrata] gi|297340407|gb|EFH70824.1| LEM3 (ligand-effect modulator 3) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/276 (75%), Positives = 233/276 (84%), Gaps = 1/276 (0%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           VVEIVDRY+T+CIP   RT+K+A+IQ +  K CTR + VTK MK+PVYVYYQL+NFYQNH
Sbjct: 75  VVEIVDRYDTECIPEPARTNKIAYIQGDGDKVCTRDLKVTKRMKQPVYVYYQLENFYQNH 134

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYVKSR+D QL+     ++ S C+PED    G+PIVPCGLIAWSLFNDTY  SRN   L
Sbjct: 135 RRYVKSRSDSQLRSPKSENQISACKPEDDV-GGQPIVPCGLIAWSLFNDTYALSRNNVSL 193

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
            VNK GIAWKSD++HKFG +VFP NFQ G + GGA L+  IPLS+QEDLIVWMRTAALPT
Sbjct: 194 AVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPT 253

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKIE DLE  DII V L+NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTVG
Sbjct: 254 FRKLYGKIESDLEMGDIIHVTLKNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVG 313

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
           G+CFFLAL+FTI+YLVKPRRLGDPSYLSWNRNPGG 
Sbjct: 314 GICFFLALAFTIMYLVKPRRLGDPSYLSWNRNPGGR 349

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098834|ref|XP_002311284.1| predicted protein [Populus trichocarpa] gi|222851104|gb|EEE88651.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/276 (72%), Positives = 234/276 (84%)

Query: 9   VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
           VVE+  RYE DCIP  NR++KV FIQS+A+KTCT  +T+ K MK+P+YVYYQLDNFYQNH
Sbjct: 75  VVEVSKRYEIDCIPPENRSNKVQFIQSSANKTCTISMTIPKRMKKPIYVYYQLDNFYQNH 134

Query: 69  RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
           RRYVKSR+D+QLK  SK ++TS C+PEDTT  G  IVPCGLIAWS+FNDTY FSR  ++L
Sbjct: 135 RRYVKSRSDKQLKSLSKETDTSSCKPEDTTAGGAAIVPCGLIAWSMFNDTYNFSRLNQEL 194

Query: 129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
           TVNK GIAWKSD+  +FGK+VFP NFQ G L GG  LNE IPL++QEDL+VWMRTAALPT
Sbjct: 195 TVNKKGIAWKSDKQKRFGKDVFPKNFQGGGLQGGKILNEKIPLNEQEDLMVWMRTAALPT 254

Query: 189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
           FRKLYGKIEVDLE N++I+V L+NNYNTYSF+GKKKLVLSTTSW+GG+NDFLGIAYLTVG
Sbjct: 255 FRKLYGKIEVDLEANEVINVTLDNNYNTYSFNGKKKLVLSTTSWIGGRNDFLGIAYLTVG 314

Query: 249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGGH 284
            +C  LA+ FT VY +KPRRLGDP++LSWNR PG  
Sbjct: 315 MICLALAMGFTAVYFIKPRRLGDPTFLSWNRGPGSQ 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2020018	349	AT1G54320 [Arabidopsis thalian	0.964	0.785	0.741	4.6e-112
TAIR|locus:2087695	350	ALIS1 "ALA-interacting subunit	0.964	0.782	0.727	2.9e-110
TAIR|locus:2206400	350	ALIS5 "ALA-interacting subunit	0.964	0.782	0.72	2.6e-109
TAIR|locus:2032780	336	AT1G16360 [Arabidopsis thalian	0.964	0.815	0.709	1.1e-108
TAIR|locus:2161453	343	AT5G46150 "AT5G46150" [Arabido	0.936	0.775	0.608	1.9e-90
DICTYBASE|DDB_G0276567	312	DDB_G0276567 "CDC50/LEM3 famil	0.799	0.727	0.479	1.3e-50
ZFIN|ZDB-GENE-040704-26	372	tmem30aa "transmembrane protei	0.369	0.282	0.477	6.1e-44
ZFIN|ZDB-GENE-030131-5884	369	tmem30ab "transmembrane protei	0.299	0.230	0.520	1.7e-43
UNIPROTKB|Q17QL5	361	TMEM30A "Uncharacterized prote	0.461	0.362	0.385	2.5e-43
UNIPROTKB|E2R2Z8	361	TMEM30A "Uncharacterized prote	0.471	0.371	0.38	8.5e-43

TAIR|locus:2020018 AT1G54320 [Arabidopsis thaliana (taxid:3702)]

 Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
 Identities = 204/275 (74%), Positives = 229/275 (83%)

Query:     9 VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
             VVEIVDRY+T+CIP   RT+KVA+IQ +  K C R + VTK MK+P+YVYYQL+NFYQNH
Sbjct:    75 VVEIVDRYDTECIPAPARTNKVAYIQGDGDKVCNRDLKVTKRMKQPIYVYYQLENFYQNH 134

Query:    69 RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
             RRYVKSR+D QL+     ++ S C+PED    G+PIVPCGLIAWSLFNDTY  SRN   L
Sbjct:   135 RRYVKSRSDSQLRSTKYENQISACKPEDDV-GGQPIVPCGLIAWSLFNDTYALSRNNVSL 193

Query:   129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
              VNK GIAWKSD++HKFG +VFP NFQ G + GGA L+  IPLS+QEDLIVWMRTAALPT
Sbjct:   194 AVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPT 253

Query:   189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
             FRKLYGKIE DLE  D I V L NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTVG
Sbjct:   254 FRKLYGKIESDLEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVG 313

Query:   249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 283
             G+CF LAL+FTI+YLVKPRRLGDPSYLSWNRNPGG
Sbjct:   314 GICFILALAFTIMYLVKPRRLGDPSYLSWNRNPGG 348

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2087695 ALIS1 "ALA-interacting subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
 Identities = 200/275 (72%), Positives = 232/275 (84%)

Query:     9 VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
             VVEIVDRY++ CIP+++R +KVA+IQ   +K+CTR + V K MK+P+YVYYQL+NFYQNH
Sbjct:    76 VVEIVDRYDSACIPLSDRANKVAYIQGTGNKSCTRTLIVPKRMKQPIYVYYQLENFYQNH 135

Query:    69 RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
             RRYVKSR+D QL+     ++   C+PED    G+PIVPCGLIAWSLFNDTY  SRN + L
Sbjct:   136 RRYVKSRSDSQLRSVKDENQIDACKPEDDF-GGQPIVPCGLIAWSLFNDTYVLSRNNQGL 194

Query:   129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
             TVNK GIAWKSD++HKFGK VFP NFQ G L GGA L+ + PLS QEDLIVWMRTAALPT
Sbjct:   195 TVNKKGIAWKSDKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPT 254

Query:   189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
             FRKLYGKIE DLE+ + I V L+NNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG
Sbjct:   255 FRKLYGKIESDLEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 314

Query:   249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 283
             G+CF LAL+FT++YLVKPRRLGDP+YLSWNR PGG
Sbjct:   315 GICFVLALAFTVMYLVKPRRLGDPTYLSWNRIPGG 349

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0015914 "phospholipid transport" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2206400 ALIS5 "ALA-interacting subunit 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 198/275 (72%), Positives = 227/275 (82%)

Query:     9 VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
             VVEIVDRY+TDCIP ++R + VA+IQ    K C R ITVTK MK PVYVYYQL+NFYQNH
Sbjct:    75 VVEIVDRYDTDCIPTSSRNNMVAYIQGEGDKICKRTITVTKAMKHPVYVYYQLENFYQNH 134

Query:    69 RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
             RRYVKSRND QL+   +  +   C PED    G+PIVPCGL+AWSLFNDTY+FSRN +QL
Sbjct:   135 RRYVKSRNDAQLRSPKEEHDVKTCAPEDNV-GGEPIVPCGLVAWSLFNDTYSFSRNSQQL 193

Query:   129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
              VNK GI+WKSDR++KFGK VFP NFQ G  IGG  LN S PLS+QEDLIVWMRTAALPT
Sbjct:   194 LVNKKGISWKSDRENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPT 253

Query:   189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
             FRKLYGKIE DL   D I V+L+NNYNTYSF+G+KKLVLSTTSWLGG+NDFLGIAYLTVG
Sbjct:   254 FRKLYGKIETDLHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLGIAYLTVG 313

Query:   249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 283
              +C FLA++F ++YLVKPR+LGDPSYLSWNR+ GG
Sbjct:   314 SICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSAGG 348

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2032780 AT1G16360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 195/275 (70%), Positives = 229/275 (83%)

Query:     9 VVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
             V+EIVDRY+TDCIP+++R +KV +IQ    K C R ITVTK MK PVYVYYQL+N+YQNH
Sbjct:    61 VIEIVDRYDTDCIPLSSRDNKVRYIQGLEDKRCNRTITVTKTMKNPVYVYYQLENYYQNH 120

Query:    69 RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
             RRYVKSR D QL+      ET  C PEDT   G+PIVPCGL+AWSLFNDTY F+RN ++L
Sbjct:   121 RRYVKSRQDGQLRSPKDEHETKSCAPEDTL-GGQPIVPCGLVAWSLFNDTYDFTRNNQKL 179

Query:   129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
              VNK  I+WKSDR+ KFGK VFP NFQ G+LIGG  L++ IPLS+QEDLIVWMRTAALPT
Sbjct:   180 PVNKKDISWKSDRESKFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPT 239

Query:   189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
             FRKLYGKI+ DL+  D I V+L+NNYNTYSF+GKKKLVLSTTSWLGG+NDFLGIAYLTVG
Sbjct:   240 FRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVG 299

Query:   249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 283
              +C FLA+SF+++YL KPR+LGDPSYLSWNR+ GG
Sbjct:   300 SICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 334

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2161453 AT5G46150 "AT5G46150" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 165/271 (60%), Positives = 212/271 (78%)

Query:    10 VEIVDRYETDCIPVANRTDKVAFI-QSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNH 68
             +EI+DRY+ +CIP   RT+K+ +I  S+  K CTR + V K+MK P+++YYQLDN+YQNH
Sbjct:    72 IEIIDRYDVECIPEEYRTNKLLYITDSSIPKNCTRYLKVQKYMKAPIFIYYQLDNYYQNH 131

Query:    69 RRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQL 128
             RRYVKSR+D+QL    + S TS CEPE+++ +G PIVPCGLIAWS+FNDT+TFSR + +L
Sbjct:   132 RRYVKSRSDQQLLHGLEYSHTSSCEPEESS-NGLPIVPCGLIAWSMFNDTFTFSRERTKL 190

Query:   129 TVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
              V++N IAWKSDR+HKFGK V+P NFQNGTLIGGA L+  IPLS QED IVWMR AAL +
Sbjct:   191 NVSRNNIAWKSDREHKFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLS 250

Query:   189 FRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVG 248
             FRKLYG+IE DLE   +++V L NNYNTYSFSG+KKL+LST++WLGG+NDFLGI YL VG
Sbjct:   251 FRKLYGRIEEDLEPGKVVEVNLMNNYNTYSFSGQKKLILSTSNWLGGRNDFLGITYLVVG 310

Query:   249 GLCFFLALSFTIVYLVKPRRLGDPSYLSWNR 279
                  +++ F +++L  PR  GD S   WN+
Sbjct:   311 SSSIVISIIFMLLHLKNPRPYGDNS---WNK 338

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

DICTYBASE|DDB_G0276567 DDB_G0276567 "CDC50/LEM3 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 119/248 (47%), Positives = 152/248 (61%)

Query:    41 CTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTT 98
             CT   T+   M+ PVY+YY+LDNFYQNHRRYVKSRND+QL+    T  S+   CEP  TT
Sbjct:    77 CTINYTLPTEMESPVYLYYKLDNFYQNHRRYVKSRNDDQLRGIEVTDFSKLKDCEPLITT 136

Query:    99 PDG-----KPIVPCGLIAWSLFNDTYTFSRNKRQL-TVNKNGIAWKSDRDHKFGKEVFPS 152
              DG     K +VPCGLIA S+FND+ + +     L  + K GIAW+SD D KF    +P 
Sbjct:   137 -DGSEDVNKILVPCGLIANSVFNDSISLADASGNLINLTKKGIAWQSDIDKKFKN--YP- 192

Query:   153 NFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEE-NDIIDVILE 211
               +NG  +G  + +      + ED IVWMRTAALP F+KLY          +  I + ++
Sbjct:   193 --ENG--VGVINFSNF----EDEDFIVWMRTAALPDFKKLYRIYHGQNGPLSGTIQIRID 244

Query:   212 NNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGD 271
             N Y   SF GKK +VLSTTSW+GGKN FLG AY+ VG +CF   + F I + + PR LG 
Sbjct:   245 NKYPVASFDGKKYVVLSTTSWIGGKNPFLGYAYIIVGIICFVQGVVFAIKHKISPRVLGS 304

Query:   272 PSYLSWNR 279
             P YL WN+
Sbjct:   305 PKYLEWNK 312

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040704-26 tmem30aa "transmembrane protein 30Aa" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 6.1e-44, Sum P(2) = 6.1e-44
 Identities = 54/113 (47%), Positives = 71/113 (62%)

Query:    40 TCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDT 97
             TCT   T+ +  +  V++YY L NFYQNHRRYVKSR+D QL   K S  + + +CEP  T
Sbjct:   111 TCTVPFTLDQPFESNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDKSSLLNPSKECEPYRT 170

Query:    98 TPDGKPIVPCGLIAWSLFNDT---YTFSRNKRQLTVN--KNGIAWKSDRDHKF 145
             + D KPI PCG IA SLFNDT   +    N  ++ ++  K GIAW +D+  KF
Sbjct:   171 S-DRKPIAPCGAIANSLFNDTLELFYIHPNGSKIGIHLVKTGIAWWTDKHVKF 222

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-5884 tmem30ab "transmembrane protein 30Ab" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
 Identities = 50/96 (52%), Positives = 67/96 (69%)

Query:   175 EDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYN---TY-----SFSGKKKLV 226
             ED IVWMRTAALPTFRKLY  I+   ++N++   +   NY+   TY     SF G+K+++
Sbjct:   263 EDFIVWMRTAALPTFRKLYRIIQ---KKNNMTPTLPRGNYSLEVTYNYPVRSFEGRKRMI 319

Query:   227 LSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVY 262
             LST SW+GGKN FLGIAY+TVG +CFFL +    ++
Sbjct:   320 LSTISWMGGKNPFLGIAYITVGSICFFLGVVLLFIH 355

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q17QL5 TMEM30A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 59/153 (38%), Positives = 87/153 (56%)

Query:   128 LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTL----IGGAHLNESIPLSK---QED 176
             + + K GIAW +D++ KF    G +     F+  T     +   ++ +S   +     ED
Sbjct:   197 IPLKKKGIAWWTDKNVKFRNPPGTDPLEERFKGTTKPVNWVKPVYMLDSDEDNNGFINED 256

Query:   177 LIVWMRTAALPTFRKLYGKIEVDLEENDIIDVI--------LENNYNTYSFSGKKKLVLS 228
              IVWMRTAALPTFRKLY  IE    +ND+   +        +  NY  +SF G+K+++LS
Sbjct:   257 FIVWMRTAALPTFRKLYRLIE---RKNDLHPTLPAGRYYLNITYNYPVHSFDGRKRMILS 313

Query:   229 TTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 261
             T SW+GGKN FLGIAY+T+G + F L +   ++
Sbjct:   314 TISWMGGKNPFLGIAYITIGSISFLLGVVLLVI 346

GO:0070863 "positive regulation of protein exit from endoplasmic reticulum" evidence=IEA

GO:0036010 "protein localization to endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R2Z8 TMEM30A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 57/150 (38%), Positives = 86/150 (57%)

Query:   128 LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGT----LIGGAHLNESIPLSK---QED 176
             + + K GIAW +D++ KF    G +     F+  T     +   ++ +S P +     ED
Sbjct:   197 IPLKKKGIAWWTDKNVKFRNPPGDQSLEERFKGTTNPVNWVKPVYMLDSEPDNNGFINED 256

Query:   177 LIVWMRTAALPTFRKLYGKIEVDLEENDIID-----VILENNYNTYSFSGKKKLVLSTTS 231
              IVWMRTAALPTFRKLY  IE   + +  +      + +  NY  +SF G+K+++LST S
Sbjct:   257 FIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYYLNITYNYPVHSFDGRKRMILSTIS 316

Query:   232 WLGGKNDFLGIAYLTVGGLCFFLALSFTIV 261
             W+GGKN FLGIAY+ +G + F L +   ++
Sbjct:   317 WMGGKNPFLGIAYIAIGSISFLLGVVLLVI 346

GO:0070863 "positive regulation of protein exit from endoplasmic reticulum" evidence=IEA

GO:0036010 "protein localization to endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SLK2	ALIS3_ARATH	No assigned EC number	0.7391	0.9683	0.7879	yes	no
Q9SA35	ALIS4_ARATH	No assigned EC number	0.7090	0.9647	0.8154	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002097001 SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (349 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
pfam03381	275	pfam03381, CDC50, LEM3 (ligand-effect modulator 3)	1e-116
COG5035	372	COG5035, CDC50, Cell cycle control protein [Cell d	3e-67

>gnl|CDD|217523 pfam03381, CDC50, LEM3 (ligand-effect modulator 3) family / CDC50 family

 Score =  334 bits (858), Expect = e-116
 Identities = 135/279 (48%), Positives = 172/279 (61%), Gaps = 23/279 (8%)

Query: 8   QVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQN 67
            V EI  RY+  C       +  A I S    TCT   T+ + MK PVY YYQL NFYQN
Sbjct: 7   NVQEIEIRYDDCCTAAPEIGESFAEIPS----TCTITFTIPEDMKGPVYFYYQLTNFYQN 62

Query: 68  HRRYVKSRNDEQLKKRSKTSETSQCEPEDT-TPDGKPIVPCGLIAWSLFNDTYTF---SR 123
           HRRYVKSR+D+QL+ ++ + + + CEP  +   +GKPI PCGLIA S+FNDT++    + 
Sbjct: 63  HRRYVKSRSDDQLRGKAVSGDDNNCEPLRSNDYNGKPIAPCGLIANSMFNDTFSLPLANN 122

Query: 124 NKRQLTVNKNGIAWKSDRDHKFGKE-------VFPSNFQNGTLIGGAHLNESIP-LSKQE 175
               +T++K GIAW SD++ KF          V P N++          + +IP     E
Sbjct: 123 GTTNVTLDKKGIAWSSDKEKKFKNTKYNPSGTVPPPNWK-----PNYEDDHTIPDNQTNE 177

Query: 176 DLIVWMRTAALPTFRKLYGKIE-VDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLG 234
           D IVWMRTAALPTFRKLY +I+  DL       + +ENNY   SF+GKK +VLSTTSW G
Sbjct: 178 DFIVWMRTAALPTFRKLYRRIDATDLPAGTYT-IQIENNYPVSSFNGKKSIVLSTTSWFG 236

Query: 235 GKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPS 273
           GKN FLGIAYL VGG+CF L + F I +L KPR+LGD S
Sbjct: 237 GKNPFLGIAYLVVGGICFLLGILFLIRHLFKPRKLGDHS 275

Members of this family have been predicted to contain transmembrane helices. The family member LEM3 is a ligand-effect modulator, mutation of which increases glucocorticoid receptor activity in response to dexamethasone and also confers increased activity on other intracellular receptors including the progesterone, oestrogen and mineralocorticoid receptors. LEM3 is thought to affect a downstream step in the glucocorticoid receptor pathway. Factors that modulate ligand responsiveness are likely to contribute to the context-specific actions of the glucocorticoid receptor in mammalian cells. The products of genes YNR048w, YNL323w and YCR094w (CDC50) show redundancy of function and are involved in regulation of transcription via CDC39. CDC39 (also known as NOT1) is normally a negative regulator of transcription either by affecting the general RNA polymerase II machinery or by altering chromatin structure. One function of CDC39 is to block activation of the mating response pathway in the absence of pheromone, and mutation causes arrest in G1 by activation of the pathway. It may be that the cold-sensitive arrest in G1 noticed in CDC50 mutants may be due to inactivation of CDC39. The effects of LEM3 on glucocorticoid receptor activity may also be due to effects on transcription via CDC39. Length = 275

>gnl|CDD|227368 COG5035, CDC50, Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]

 Score =  213 bits (543), Expect = 3e-67
 Identities = 107/269 (39%), Positives = 155/269 (57%), Gaps = 26/269 (9%)

Query: 29  KVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE 88
           + +  + +  + C  + TV   MK+PV++YY+L NFYQNHRRYVKS +++QL+  +  S+
Sbjct: 111 RFSTDEEDDFQKCQIRFTVPSDMKKPVFIYYRLTNFYQNHRRYVKSFDEDQLRGEALKSD 170

Query: 89  T--SQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKN----GIAWKSDRD 142
              S C+P     + K I PCGLIA S+FNDT++      + T N N    GIAW+SDR 
Sbjct: 171 DLKSNCKPLSYN-EDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKGIAWESDR- 228

Query: 143 HKFGK------EVFP-----SNFQNGTLIGGAHLNESIP-LSKQEDLIVWMRTAALPTFR 190
           H++ K      ++ P       + +G      + +++IP LS  E+   WMRTAA P F 
Sbjct: 229 HRYKKTKYNASDIVPPPNWAKMYPDG------YTDDNIPDLSTWEEFQNWMRTAAFPKFS 282

Query: 191 KLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGL 250
           KL  +   D+       + +  N+    F+G K +VL+T S +GGKN FLGI YL VGG+
Sbjct: 283 KLAMRNVNDVLPPGTYQLNITLNFPVLEFNGTKSIVLTTNSVIGGKNYFLGIVYLIVGGI 342

Query: 251 CFFLALSFTIVYLVKPRRLGDPSYLSWNR 279
           C  L L F I +L KPR++ D SYL+WN 
Sbjct: 343 CALLGLIFLIKWLFKPRKMADHSYLNWNM 371

Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
KOG2952	351	consensus Cell cycle control protein [Cell cycle c	100.0
PF03381	278	CDC50: LEM3 (ligand-effect modulator 3) family / C	100.0
COG5035	372	CDC50 Cell cycle control protein [Cell division an	100.0
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	89.81

>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-94  Score=665.33  Aligned_cols=274  Identities=57%  Similarity=0.998  Sum_probs=248.9

Q ss_pred             cccccCeEEEEEecCCCCCCCCCCCcceeeeecCC--CceeEEEEEecCCCCCceEEEEEecchhhhhhhhhhCCChhhh
Q 023309            3 SLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNA--SKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQL   80 (284)
Q Consensus         3 ~~~s~~v~E~~~~Yd~~c~~~~~~~~~~~~~~~~~--~~~C~i~f~i~~~~k~pVyvYY~L~nFyQNHr~y~~S~s~~QL   80 (284)
                      .++|++|+|+++|| ++|...+.++.+.++++...  .+.|+++|+||++|++|||+||+|+|||||||||++|||++||
T Consensus        64 ~~as~~v~Ei~i~Y-Tdc~~~~~~~~~~~~~~~~~~~~~~C~~~f~vp~~~k~pVy~YY~L~nfyQNhRRYvkSr~d~QL  142 (351)
T KOG2952|consen   64 LFASSKVIEITIRY-TDCIPTGFRTNPSEYIQGHFDQTKSCTITFTVPKDMKGPVYLYYELTNFYQNHRRYVKSRDDKQL  142 (351)
T ss_pred             eEeecceEEEEEec-ccCccccccccchhhhhcccCcccceEEEEEccccCCCCEEEEEehhHHHHHHHHHHhcccHHHh
Confidence            47899999999999 58988665555555555332  4679999999999999999999999999999999999999999


Q ss_pred             cCCCCC-CCCCCCCccccCCCCCeeecchhhhcccccceeecccCCc---eeeeeecccccCcccccccCCCCC------
Q 023309           81 KKRSKT-SETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKR---QLTVNKNGIAWKSDRDHKFGKEVF------  150 (284)
Q Consensus        81 ~G~~~~-~~~~~C~P~~~~~~g~~i~PCGliA~S~FNDtf~l~~~~~---~~~~~~~gIaw~~D~~~kf~~~~~------  150 (284)
                      +|+... .+...|.|+..+.+|++|+||||||||||||||++...++   .++++++||||++|+ +||+++.+      
T Consensus       143 ~G~~~~~~~~~~C~Pl~~~~~~kpi~PCGlIAnSlFNDTf~~~~~~~~~~~~~l~~kgIaW~sDk-~kf~~p~~n~~~~~  221 (351)
T KOG2952|consen  143 RGEPSKELNVKSCAPLEYNEGGKPIYPCGLIANSLFNDTFELSLTNDGDSDYPLTTKGIAWESDK-HKFRKPIYNASGIV  221 (351)
T ss_pred             cCCCccccCccCCCcceecCCCceeeecchhcchhcccccchhcccCCCccceeccCCccchhhh-hhhcCCCCcccccc
Confidence            999763 4456699999977779999999999999999999976543   789999999999999 99988654      


Q ss_pred             -CCCCcCCcccCCcccCCCCCCCCchhHHHhhhcCCCCchhhhhhhcccc-CCCCCEEEEEEeeeecCcccCceEEEEEE
Q 023309          151 -PSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVD-LEENDIIDVILENNYNTYSFSGKKKLVLS  228 (284)
Q Consensus       151 -p~~w~~~~~~~~~~~~~~~~~~~ne~FivWMr~Aalp~FrKLYg~i~~~-L~~G~~y~i~I~nnypv~~f~G~K~ivls  228 (284)
                       |++|++..+.++ ..+++.++.+||+||||||+||||+||||||+|+++ |++| +|++.|++||||..|+|+|.+||+
T Consensus       222 pPpnW~k~~~~gg-~~d~n~pl~~nedfivWMRtAAlPtFrKLy~~i~~~gL~~G-~y~l~i~~Nypv~sf~G~K~~vls  299 (351)
T KOG2952|consen  222 PPPNWQKGYPEGG-YTDDNIPLSENEDFIVWMRTAALPTFRKLYRIIESNGLPKG-TYQLNITNNYPVRSFNGKKKFVLS  299 (351)
T ss_pred             CCccccccCCcCC-cCCCCCCchhhHHHHHHHHhcccchHHHHHhhhccCCCCCc-eEEEEEecccceeecCCceEEEEe
Confidence             999999998887 667777799999999999999999999999999986 9999 699999999999999999999999


Q ss_pred             eccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 023309          229 TTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRN  280 (284)
Q Consensus       229 t~s~~GgkN~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~gd~~~l~w~~~  280 (284)
                      |.||+||||+||||+|||||++|+++|++|++.|+++||++||+++|+|++.
T Consensus       300 t~SwlGgkN~FLgI~YLvVG~ic~~l~~~f~~~~l~~~r~~~d~~~l~~~~~  351 (351)
T KOG2952|consen  300 TTSWLGGKNPFLGIAYLVVGSICILLGLIFLVIYLFKPRRLGDPSYLSWNRS  351 (351)
T ss_pred             eccccccCCccceehHHHHHHHHHHHHHHHHHHHhhcccccCCccccccccC
Confidence            9999999999999999999999999999999999999999999999999963

>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function

Probab=100.00  E-value=8.2e-86  Score=609.98  Aligned_cols=261  Identities=51%  Similarity=0.838  Sum_probs=225.2

Q ss_pred             cccccCeEEEEEecCCCCCCCCCCCcceeeeecCCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhhCCChhhhcC
Q 023309            3 SLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKK   82 (284)
Q Consensus         3 ~~~s~~v~E~~~~Yd~~c~~~~~~~~~~~~~~~~~~~~C~i~f~i~~~~k~pVyvYY~L~nFyQNHr~y~~S~s~~QL~G   82 (284)
                      ++++++|+|+++|||+.|......    ........++|.++|+||++|++||||||||+|||||||||++|+|++||+|
T Consensus         2 l~~s~~v~E~~~~Yd~~~~~~~~~----~~~~~~~~~~c~v~f~i~~~~~~pVyvYY~L~nFYQNhr~y~~S~~~~QL~G   77 (278)
T PF03381_consen    2 LVASNSVVEIEIRYDDCCDCQNCY----INEFSPIPCTCSVTFNIPEDMKGPVYVYYELTNFYQNHRRYVKSRSDSQLKG   77 (278)
T ss_pred             EEEeCCEEEEEEECCCCCCCCCcc----ccccCCCCceEEEEEEcCccCCCCEEEEEEEehhhHHhHHHHhcCCHHHhCC
Confidence            478999999999999888653210    0000111468999999999999999999999999999999999999999999


Q ss_pred             CCCC-CCCCCCCccccC--CCCCeeecchhhhcccccceeeccc----CCceeeeeecccccCcccccccCCC-------
Q 023309           83 RSKT-SETSQCEPEDTT--PDGKPIVPCGLIAWSLFNDTYTFSR----NKRQLTVNKNGIAWKSDRDHKFGKE-------  148 (284)
Q Consensus        83 ~~~~-~~~~~C~P~~~~--~~g~~i~PCGliA~S~FNDtf~l~~----~~~~~~~~~~gIaw~~D~~~kf~~~-------  148 (284)
                      +... ++.++|+|+.+.  .++++++||||||||||||||+|..    .++.++++++||+|++|++.+|+++       
T Consensus        78 ~~~~~~~~~~C~p~~~~~~~~~~~~~PCGliA~S~FNDtF~l~~~~~~~~~~~~~~~~gIaw~~d~~~~fk~~~~~~~~~  157 (278)
T PF03381_consen   78 KIVSKSDLSDCDPLRTNNENNGKIIYPCGLIANSMFNDTFSLYRRNSGNNENIPLDETGIAWSSDRESKFKNPHYNNSNT  157 (278)
T ss_pred             CccccCCCCCCCCceeccCCCCCEeecccHhHhhhccceEEeeecccCCCceeeeecccccCchHHHHhcCCCCCccccc
Confidence            9743 446899999874  4788999999999999999999973    3567999999999999999999873       


Q ss_pred             CCCCCCcCCcccCCcccCCC-CCCCCchhHHHhhhcCCCCchhhhhhhc-cccCCCCCEEEEEEeeeecCcccCceEEEE
Q 023309          149 VFPSNFQNGTLIGGAHLNES-IPLSKQEDLIVWMRTAALPTFRKLYGKI-EVDLEENDIIDVILENNYNTYSFSGKKKLV  226 (284)
Q Consensus       149 ~~p~~w~~~~~~~~~~~~~~-~~~~~ne~FivWMr~Aalp~FrKLYg~i-~~~L~~G~~y~i~I~nnypv~~f~G~K~iv  226 (284)
                      ++|++|.....     .+.. ++..+|||||||||+||||+|||||||| +++|++|+ |+|.|+|||||+.|+|+|+||
T Consensus       158 ~~~~~W~~~~~-----~~~~~p~~~~ne~fivWMr~a~lp~FrKLYg~i~~~~L~~G~-y~i~I~nnypv~~f~G~K~iv  231 (278)
T PF03381_consen  158 VPPPNWRPGYE-----NDTPWPDNSENEHFIVWMRPAALPTFRKLYGRIDNDDLPAGN-YTIDITNNYPVSSFGGKKSIV  231 (278)
T ss_pred             cCCCceeeecc-----CCCCCCcccccHHHHHHhccccCCCeeEeEeeeccCCCCCce-EEEEEEEeecccccCcEEEEE
Confidence            35777853211     1222 2334699999999999999999999999 89999995 999999999999999999999


Q ss_pred             EEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 023309          227 LSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPS  273 (284)
Q Consensus       227 lst~s~~GgkN~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~gd~~  273 (284)
                      |+|+||+||||+||||+||++|++|+++|++|++.|+++||++||++
T Consensus       232 lst~s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~~gD~~  278 (278)
T PF03381_consen  232 LSTTSWFGGKNYFLGIAYLVVGGICLVLAIIFLIIHYFKPRKLGDTS  278 (278)
T ss_pred             EEeccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999985

They have predicted transmembrane helices.; GO: 0016020 membrane

>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-84  Score=588.89  Aligned_cols=273  Identities=40%  Similarity=0.697  Sum_probs=238.0

Q ss_pred             cccccCeEEEEEecCCCCCCCCCCC------cce------------eee--ecCC--CceeEEEEEecCCCCCceEEEEE
Q 023309            3 SLSLYQVVEIVDRYETDCIPVANRT------DKV------------AFI--QSNA--SKTCTRQITVTKHMKRPVYVYYQ   60 (284)
Q Consensus         3 ~~~s~~v~E~~~~Yd~~c~~~~~~~------~~~------------~~~--~~~~--~~~C~i~f~i~~~~k~pVyvYY~   60 (284)
                      .+++.+|+|++++|+ +|...++..      ...            .|.  .+.+  ...|+++|++|++||.|||+||+
T Consensus        64 ~~~~s~VqeltI~Yt-dc~t~as~~f~~iPs~~~~~~f~~~~~~~pqW~~~~~~~~d~~~C~irf~vp~~~k~~vfiyyr  142 (372)
T COG5035          64 LVASSSVQELTIDYT-DCMTLASDEFSDIPSEYIQFHFKKKVNVLPQWRFSTDEEDDFQKCQIRFTVPSDMKKPVFIYYR  142 (372)
T ss_pred             EEEeeeeeeeeeccc-ccccccchhhhhCchhheeeeeecccccccceeecccccCCcceeEEEEEchhhcccceeeeeh
Confidence            468899999999995 898766311      111            111  1122  46799999999999999999999


Q ss_pred             ecchhhhhhhhhhCCChhhhcCCCCC--CCCCCCCccccCCCCCeeecchhhhcccccceeecccC----Cceeeeeecc
Q 023309           61 LDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRN----KRQLTVNKNG  134 (284)
Q Consensus        61 L~nFyQNHr~y~~S~s~~QL~G~~~~--~~~~~C~P~~~~~~g~~i~PCGliA~S~FNDtf~l~~~----~~~~~~~~~g  134 (284)
                      |+|||||||||++|.|.+||+|+...  ...+.|.|+.. .++|+||||||||||||||||+....    ++.+.++.+|
T Consensus       143 l~nFyQNhrRY~~S~d~dQl~Ge~~~~~~l~~nC~PL~~-nedK~~YPcGLIaNSmfNDtf~~~l~~i~Dts~Y~lttkg  221 (372)
T COG5035         143 LTNFYQNHRRYVKSFDEDQLRGEALKSDDLKSNCKPLSY-NEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKG  221 (372)
T ss_pred             hHHHHHhhHHHHhccCHHHhcCcccccccccccCCcccc-cCCCeeecccccccccccccchhhccccccccccccccCC
Confidence            99999999999999999999999754  22368999998 45599999999999999999987542    3468899999


Q ss_pred             cccCcccccccCCC-------CCCCCCcCCcccCCcccCCCCCCCCchhHHHhhhcCCCCchhhhhhhccc-cCCCCCEE
Q 023309          135 IAWKSDRDHKFGKE-------VFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEV-DLEENDII  206 (284)
Q Consensus       135 Iaw~~D~~~kf~~~-------~~p~~w~~~~~~~~~~~~~~~~~~~ne~FivWMr~Aalp~FrKLYg~i~~-~L~~G~~y  206 (284)
                      |||++|+ ++|+++       ++||+|.+.+++|+.+-| -+++.++|.|+||||+||||+|+||++|... .|++| +|
T Consensus       222 IaW~sDr-~rykktkYn~sdIvpPPnW~k~ypdGYtd~N-iPDls~wE~Fq~WMrtAafP~F~KLa~~N~~d~l~~G-~Y  298 (372)
T COG5035         222 IAWESDR-HRYKKTKYNASDIVPPPNWAKMYPDGYTDDN-IPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLPPG-TY  298 (372)
T ss_pred             ccchhhc-ccccCCCCChhhcCCCCchHhhCCCCCCccC-CCcchhHHHHHHHhhcccCchHHHHhcccccccCCCc-eE
Confidence            9999999 688764       789999999998876544 3678899999999999999999999999865 69999 69


Q ss_pred             EEEEeeeecCcccCceEEEEEEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 023309          207 DVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRN  280 (284)
Q Consensus       207 ~i~I~nnypv~~f~G~K~ivlst~s~~GgkN~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~gd~~~l~w~~~  280 (284)
                      +++|+.||||.+|+|+|+|+|+|.|.+||||+||||+|||||++|.++|++|++.++++||+||||+||+|+..
T Consensus       299 ~lnI~l~fPv~~f~GtKsi~Ltt~SviGgkN~fLGI~ylivg~ical~~~if~~~~~f~pR~~~Dh~yLnw~~~  372 (372)
T COG5035         299 QLNITLNFPVLEFNGTKSIVLTTNSVIGGKNYFLGIVYLIVGGICALLGLIFLIKWLFKPRKMADHSYLNWNME  372 (372)
T ss_pred             EEEEEeecceeecCCceEEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHHHHHhhCCcccCCcccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999863

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=89.81  E-value=0.29  Score=40.50  Aligned_cols=26  Identities=15%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023309          241 GIAYLTVGGLCFFLALSFTIVYLVKP  266 (284)
Q Consensus       241 gi~yiivG~i~~~~~i~~l~~~~~~~  266 (284)
                      .|+.||+|+++-++++++||.++++.
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~irR   90 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIRR   90 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHH
Confidence            36777888888888887777777653

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00