Citrus Sinensis ID: 023316

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHEEEccEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEcccccccccccccccccEEEEEEEccEEEEEEEEEccccccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccEEHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccccccccccccccHcccccccccccccccccccHHcEEEEEEEEccccccHHHHHHEEccccccccccEEEEEEEEEEEEEcccEEEEEEEEcccccHHEEEcHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccEccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSigkqpavryqkltrrsssesspapdtmEAGLVELSRtfssgydtdsdLVSLKISllgdcqigkTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSiwdvggdsrsfdhvpiACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQtaipiligtkfddfvrlppdlqWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLfnlpwtvkrnltigepiidf
Flexible Loop (DISEMBL)
MAKIIHEATENMTQLCRRVVHvnirrslfdrvSIFRRFFRFIWERILVcsigkqpavryqkltrrsssesspapdtMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFnlpwtvkrnltigepiidf
Low Complexity Region (SEG)
MAKIIHEATENMTQLCRRVVHVNIRRSLfdrvsifrrffrfiweriLVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF
Disordered region (IsUnstruct)
*********ENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY****************************F*SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPI***
Disordered Region (DISOPRED)
*********ENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILV**************************************************VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF***************IIDF
Disordered Region (DISEMBL)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR******************MEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF
Disordered Region (DISPRO)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV*************************************DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
P87027	198	Septum-promoting GTP-bind	yes	no	0.676	0.969	0.492	4e-51
P38987	245	Protein TEM1 OS=Saccharom	yes	no	0.654	0.759	0.406	3e-36
Q9VP48	388	Ras-related protein Rab-2	yes	no	0.408	0.298	0.390	1e-14
P55745	223	Ras-related protein Rab-2	yes	no	0.538	0.686	0.275	6e-13
Q6AXT5	223	Ras-related protein Rab-2	yes	no	0.538	0.686	0.275	8e-13
Q9UL25	225	Ras-related protein Rab-2	yes	no	0.538	0.68	0.275	1e-12
Q17R06	222	Ras-related protein Rab-2	yes	no	0.538	0.689	0.275	1e-12
P35282	222	Ras-related protein Rab-2	yes	no	0.538	0.689	0.275	1e-12
O49841	210	Ras-related protein RABC2	no	no	0.654	0.885	0.281	2e-12
Q9UL26	194	Ras-related protein Rab-2	no	no	0.549	0.804	0.273	2e-12

>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 93  DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 151
           D   + V++K+ ++GD  IGKTS +V YV G+  E S Q  G+N + KT+ ++   I FS
Sbjct: 3   DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62

Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGT 211
           IWD+GG     + +P+ C DAVAILFMFDL+ + TLNSI  WY +AR +N+TA+PILIGT
Sbjct: 63  IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGT 122

Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
           K+D F+  P + Q  I  QAR YAKAMKA+L F S +H+INV KIFK ++AK+F+L  T+
Sbjct: 123 KYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTI 182

Query: 272 KRNLTIGEPIIDF 284
                +G+PI+++
Sbjct: 183 PEIKNVGDPILEY 195

GTP-binding protein essential for the induction of septum formation at G2 and pre-START stages of mitosis. Acts via the cdc7 protein kinase pathway.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38987|TEM1_YEAST Protein TEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TEM1 PE=1 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 115/187 (61%), Gaps = 1/187 (0%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V +++ L+GD Q+GKTS +VKYV N  ++   Q  G+N + + + ++   I FSI D+GG
Sbjct: 19  VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
                + +PIA   +  I+F+FDLT   TL+SI  WY +A   N +AIPIL+GTK+D  +
Sbjct: 79  QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLI 138

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTI 277
            L P+ Q  I+  +  YA+ M A L F S   +IN+ KIFK  +AK+FNL  T+     I
Sbjct: 139 DLDPEYQEQISRTSMKYAQVMNAPLIFCSTAKSINIQKIFKIALAKIFNLTLTIPEINEI 198

Query: 278 GEPIIDF 284
           G+P++ +
Sbjct: 199 GDPLLIY 205

GTP-binding protein involved in termination of M phase. May play a role in triggering the degradation of G2 cyclin to inactivate M-phase promoting factor at the termination of mitosis. Acts upstream of CDC15 kinase and may be required to activate the CDC15 protein kinase pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 7/123 (5%)

Query: 97  DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL----QMAGLNLINKTLMVQGARIAFSI 152
           D V+ K  LLGD  +GKTSF+VKY  N  E  L       G+ L NK ++V G R+   I
Sbjct: 187 DTVNHKTILLGDSGVGKTSFLVKY--NTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQI 244

Query: 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGT 211
           WD  G  R         +DA A+L ++D+T++ T ++I  W  E R++ Q  + I LIG 
Sbjct: 245 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGN 304

Query: 212 KFD 214
           K D
Sbjct: 305 KAD 307

Participates in exocrine secretion.

Drosophila melanogaster (taxid: 7227)

>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 17  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 77  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Canis familiaris (taxid: 9615)

>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 17  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 77  ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Rattus norvegicus (taxid: 10116)

>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 19  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 78

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 79  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 135

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 136 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 173

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration (By similarity). During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Homo sapiens (taxid: 9606)

>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 16  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 75

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 76  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVD--- 132

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 133 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 170

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Bos taurus (taxid: 9913)

>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 17  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 77  ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Mus musculus (taxid: 10090)

>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 20/206 (9%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ 144
           S +  SGYD     +S KI L+GD  +GK+S +V ++ +  E      G++   K L V 
Sbjct: 3   SSSGQSGYD-----LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG 57

Query: 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKW--N 201
           G R+  +IWD  G  R         + A  I+ ++D+T R T  ++V  W  E   +  N
Sbjct: 58  GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTN 117

Query: 202 QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
           Q  + +L+G K D         +  I     A AK +       SA    NV + F+ + 
Sbjct: 118 QECVRMLVGNKVDRESERGVSREEGI-----ALAKELNCMFLECSARTRQNVEQCFEELA 172

Query: 262 AKLFNLP-------WTVKRNLTIGEP 280
            K+  +P         VKRN+   +P
Sbjct: 173 LKIMEVPSLLEEGSSAVKRNILKQKP 198

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
           L  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+  Q     F IWD  
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62

Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  R     P+  + + A + ++D+T   T +++  W  E R+     I + I     D 
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122

Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           +    D++  +   A+ YA ++ A    +SA + IN+N++F
Sbjct: 123 I----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
224117478	278	predicted protein [Populus trichocarpa]	0.971	0.992	0.744	1e-120
224126377	279	predicted protein [Populus trichocarpa]	0.968	0.985	0.736	1e-117
356553345	282	PREDICTED: septum-promoting GTP-binding	0.978	0.985	0.724	1e-116
356501505	282	PREDICTED: septum-promoting GTP-binding	0.971	0.978	0.719	1e-116
147838102	277	hypothetical protein VITISV_008356 [Viti	0.964	0.989	0.738	1e-114
225461736	282	PREDICTED: septum-promoting GTP-binding	0.964	0.971	0.738	1e-114
357494385	289	Ras-related protein Rab-37 [Medicago tru	0.996	0.979	0.689	1e-114
297796357	288	GTP-binding family protein [Arabidopsis	0.992	0.979	0.656	1e-105
356567378	284	PREDICTED: septum-promoting GTP-binding	0.978	0.978	0.665	1e-102
255648030	289	unknown [Glycine max]	0.919	0.903	0.689	1e-101

>gi|224117478|ref|XP_002317584.1| predicted protein [Populus trichocarpa] gi|222860649|gb|EEE98196.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/286 (74%), Positives = 245/286 (85%), Gaps = 10/286 (3%)

Query: 1   MAKIIHEATENMTQLCRRVVHV-NIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY 59
           MA+++HE    MTQLCR VVHV NI+ ++ +RV++F++FF+FIW+RIL CSIGK   VRY
Sbjct: 1   MAEVVHE---KMTQLCREVVHVKNIKWNILERVTVFKQFFQFIWDRILACSIGK--PVRY 55

Query: 60  QKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVK 119
           ++L  R  S   P P+ MEAG+  L     SG++ DSDLV LKISLLGDCQIGKTSF++K
Sbjct: 56  RRLASRPYS---PPPEAMEAGVESLEAASCSGFNPDSDLVRLKISLLGDCQIGKTSFMIK 112

Query: 120 YVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178
           YVG+EQE+  L M GLNL++KTL VQGARI+FSIWDV GDSRS DHVPIACKDAVAILFM
Sbjct: 113 YVGDEQEKKCLGMTGLNLMDKTLFVQGARISFSIWDVAGDSRSIDHVPIACKDAVAILFM 172

Query: 179 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM 238
           FDLTSRCTLNS++ WYS+ARKWNQTAIPILIGTKFDDFV+LPP+LQWTI TQARAYAKAM
Sbjct: 173 FDLTSRCTLNSVLEWYSQARKWNQTAIPILIGTKFDDFVQLPPNLQWTIVTQARAYAKAM 232

Query: 239 KATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           KATLFFSSA HNINVNKIFKFIMAKL NLPWTV+RNLTIGEPIIDF
Sbjct: 233 KATLFFSSAKHNINVNKIFKFIMAKLLNLPWTVERNLTIGEPIIDF 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126377|ref|XP_002319823.1| predicted protein [Populus trichocarpa] gi|222858199|gb|EEE95746.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/288 (73%), Positives = 248/288 (86%), Gaps = 13/288 (4%)

Query: 1   MAKIIHEATENMTQLCRRVVHVN-IRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY 59
           M+KI+HE    MTQLC ++ H N I+ S+ +RV++F++FF FIW++IL CSIGK PA RY
Sbjct: 1   MSKIVHE---KMTQLCVKIAHGNSIKWSILERVTVFKQFFHFIWDKILACSIGK-PA-RY 55

Query: 60  QKLTRRSSSESSPAPDTMEAGLVELSRTFSS--GYDTDSDLVSLKISLLGDCQIGKTSFV 117
           ++LT RS S   P P+ +EAG VE S   +S  G+  DSDLVSLKISLLGDCQIGKTSFV
Sbjct: 56  RRLTYRSCS---PPPEAIEAG-VETSLEAASCRGFSKDSDLVSLKISLLGDCQIGKTSFV 111

Query: 118 VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176
           +KYVG+EQE+  L+M GL+L++KTL VQGARI+FSIWDV GDS S DHVPIACKDAVAIL
Sbjct: 112 IKYVGDEQEKKCLEMTGLSLMDKTLFVQGARISFSIWDVAGDSSSLDHVPIACKDAVAIL 171

Query: 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK 236
           FMFDLTSRCTLN++V WY++ARKWNQTAIPILIGTKFDDFV+LPP+LQWTI TQARAYAK
Sbjct: 172 FMFDLTSRCTLNNVVEWYNQARKWNQTAIPILIGTKFDDFVQLPPNLQWTIVTQARAYAK 231

Query: 237 AMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           AMKATLFFSS+ HNINVNKIFKFIMAKLFNLPWTV+RNLT+GEPIIDF
Sbjct: 232 AMKATLFFSSSKHNINVNKIFKFIMAKLFNLPWTVERNLTVGEPIIDF 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553345|ref|XP_003545017.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/283 (72%), Positives = 237/283 (83%), Gaps = 5/283 (1%)

Query: 3   KIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKL 62
           KIIH+ T  M+QLC+++V V++R     RVS    FFRFIW R++VCS+   P+  Y+KL
Sbjct: 4   KIIHDTTRKMSQLCQKIVQVDVRWGFLKRVSFVGHFFRFIWNRLVVCSVAGSPS-HYRKL 62

Query: 63  TRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVG 122
             R  S S PA  T++  +   + T + GYD+DSDLV+LKISLLGDC IGKT+FV+KYVG
Sbjct: 63  PLRDPSSSPPA--TVD-DVFSSAATTTGGYDSDSDLVNLKISLLGDCHIGKTTFVIKYVG 119

Query: 123 NEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181
           NEQE+ SLQM GLNL++KTL VQGARI+F IWDV GD RS D +P+ACKDAVAIL MFDL
Sbjct: 120 NEQEKGSLQMEGLNLMDKTLSVQGARISFRIWDVAGDKRSLDQIPMACKDAVAILIMFDL 179

Query: 182 TSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT 241
           TSRCTLNS+VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD+QWTIATQARAYA+AMKAT
Sbjct: 180 TSRCTLNSVVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDVQWTIATQARAYARAMKAT 239

Query: 242 LFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           LFFSSATHNINVNKIFKFIMAKLFNLPWTV+RNL +GEPIIDF
Sbjct: 240 LFFSSATHNINVNKIFKFIMAKLFNLPWTVERNLRVGEPIIDF 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501505|ref|XP_003519565.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/285 (71%), Positives = 237/285 (83%), Gaps = 9/285 (3%)

Query: 3   KIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKL 62
           KIIH+ T  M+QLC+++V V++R  +  RVS    FFRFIW R+LVCS+  +P+ +Y+KL
Sbjct: 4   KIIHDTTRKMSQLCQKIVKVDVRWGVLKRVSFVGHFFRFIWNRLLVCSVAGRPS-QYRKL 62

Query: 63  TRRSSSESSP--APDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKY 120
             R  S S P  A D   +     + T + GYD+DSDLV+LKISLLGDC IGKT+FV+KY
Sbjct: 63  PVRDPSSSPPSYADDVFFS-----ATTTTGGYDSDSDLVNLKISLLGDCHIGKTTFVIKY 117

Query: 121 VGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179
           VGNEQE RSLQM GLNL++KTL VQGARI+F IWDV GD RS D +P+ACKD+VAIL MF
Sbjct: 118 VGNEQEKRSLQMEGLNLMDKTLSVQGARISFRIWDVAGDKRSLDQIPMACKDSVAILIMF 177

Query: 180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK 239
           DLTSRCTLNS+VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD+QWTI TQARAYA+AMK
Sbjct: 178 DLTSRCTLNSVVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDVQWTIVTQARAYARAMK 237

Query: 240 ATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           ATLFFSSATHNINVNKIFKFIMAKLFNLPWTV+RNL +GEPIIDF
Sbjct: 238 ATLFFSSATHNINVNKIFKFIMAKLFNLPWTVERNLRVGEPIIDF 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838102|emb|CAN60928.1| hypothetical protein VITISV_008356 [Vitis vinifera] gi|302142871|emb|CBI20166.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/279 (73%), Positives = 242/279 (86%), Gaps = 5/279 (1%)

Query: 7   EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRS 66
           EAT  MTQLCR++V VNIR  + DRV+IF++FFRFIW+RI+VCSIGK   +RY +L+RRS
Sbjct: 3   EATGKMTQLCRKIVRVNIRVRILDRVTIFQKFFRFIWDRIIVCSIGK--PIRYHRLSRRS 60

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE 126
              S    +T+E+GL     + ++G D+DSDLVSLKI ++GDCQIGKTSF++KYVG+EQE
Sbjct: 61  PPPSPSP-ETIESGLQSDDPSTAAG-DSDSDLVSLKICVMGDCQIGKTSFLIKYVGDEQE 118

Query: 127 RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185
           +  L+M GLNL++KTL+VQ ARIAFSIWDVGGD  S  HVPIACKDAVAILFMFDLTSRC
Sbjct: 119 KKCLEMTGLNLMDKTLIVQDARIAFSIWDVGGDHTSLTHVPIACKDAVAILFMFDLTSRC 178

Query: 186 TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 245
           TLNS++GWYS+AR+WNQTAIPI+IGTKFDDFV+LPPDLQ  I TQAR YA+AMKATLFFS
Sbjct: 179 TLNSVIGWYSQARRWNQTAIPIMIGTKFDDFVKLPPDLQRPIVTQARGYARAMKATLFFS 238

Query: 246 SATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           SATHNINVNKIFKFIMAKLFNLPWTV+RNLTIGEPIIDF
Sbjct: 239 SATHNINVNKIFKFIMAKLFNLPWTVQRNLTIGEPIIDF 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461736|ref|XP_002285529.1| PREDICTED: septum-promoting GTP-binding protein 1 [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/279 (73%), Positives = 242/279 (86%), Gaps = 5/279 (1%)

Query: 7   EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRS 66
           EAT  MTQLCR++V VNIR  + DRV+IF++FFRFIW+RI+VCSIGK   +RY +L+RRS
Sbjct: 8   EATGKMTQLCRKIVRVNIRVRILDRVTIFQKFFRFIWDRIIVCSIGK--PIRYHRLSRRS 65

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE 126
              S    +T+E+GL     + ++G D+DSDLVSLKI ++GDCQIGKTSF++KYVG+EQE
Sbjct: 66  PPPSPSP-ETIESGLQSDDPSTAAG-DSDSDLVSLKICVMGDCQIGKTSFLIKYVGDEQE 123

Query: 127 RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185
           +  L+M GLNL++KTL+VQ ARIAFSIWDVGGD  S  HVPIACKDAVAILFMFDLTSRC
Sbjct: 124 KKCLEMTGLNLMDKTLIVQDARIAFSIWDVGGDHTSLTHVPIACKDAVAILFMFDLTSRC 183

Query: 186 TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 245
           TLNS++GWYS+AR+WNQTAIPI+IGTKFDDFV+LPPDLQ  I TQAR YA+AMKATLFFS
Sbjct: 184 TLNSVIGWYSQARRWNQTAIPIMIGTKFDDFVKLPPDLQRPIVTQARGYARAMKATLFFS 243

Query: 246 SATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           SATHNINVNKIFKFIMAKLFNLPWTV+RNLTIGEPIIDF
Sbjct: 244 SATHNINVNKIFKFIMAKLFNLPWTVQRNLTIGEPIIDF 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494385|ref|XP_003617481.1| Ras-related protein Rab-37 [Medicago truncatula] gi|355518816|gb|AET00440.1| Ras-related protein Rab-37 [Medicago truncatula]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/290 (68%), Positives = 243/290 (83%), Gaps = 7/290 (2%)

Query: 1   MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQ 60
           MAK+I E T+ MTQLCR++V V+++  +  RVS   +FFRFIW +++VCS+G+ PA +Y+
Sbjct: 1   MAKVIQETTKKMTQLCRKIVQVDVKYGMLQRVSFVGQFFRFIWNKLMVCSVGRSPA-QYR 59

Query: 61  KLTRRSSSESSPA-----PDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTS 115
           +L+   SS SS +     P T++ G     +  ++GY++DSDLV+LKISLLGDC IGKT+
Sbjct: 60  RLSLNHSSASSSSSLSPSPATVDDGFTREQQHTNNGYESDSDLVNLKISLLGDCHIGKTT 119

Query: 116 FVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174
           F++KYVGNE E RSLQM GLNL++KTL VQGARI+F IWDV GD +S D +P+ACKDAVA
Sbjct: 120 FLIKYVGNEVEKRSLQMEGLNLMDKTLYVQGARISFCIWDVAGDKKSLDQIPMACKDAVA 179

Query: 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY 234
           +L MFDLTSR TLN++VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI TQARAY
Sbjct: 180 LLIMFDLTSRSTLNNVVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIVTQARAY 239

Query: 235 AKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           A+AMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT++RNL +GEPIIDF
Sbjct: 240 ARAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTIERNLKVGEPIIDF 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796357|ref|XP_002866063.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297311898|gb|EFH42322.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/288 (65%), Positives = 227/288 (78%), Gaps = 6/288 (2%)

Query: 1   MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQ 60
           MA+ +HE    +T  CR++VHVNI+  + +RVSIF  FFRF+W +I+ CS   +  + Y+
Sbjct: 1   MAEKVHEIAGKLTPFCRKIVHVNIKWRIIERVSIFGDFFRFLWRKIVSCSSIIEKPILYR 60

Query: 61  KLTRRSSSESSPAPDTMEAGLVELS---RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV 117
           ++  R SS +    D  +    E +   R F SG  +DSDLVSLKISLLGDCQ GKT+FV
Sbjct: 61  QIVHRISSTAGDIFDGDDDTATEHTVSTRRFGSG--SDSDLVSLKISLLGDCQTGKTTFV 118

Query: 118 VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFDHVPIACKDAVAIL 176
           +KYVG+E +  L+M GLNL++KT  VQG  I+FSIWDVGGD  RS DH+PIACKDAVAIL
Sbjct: 119 IKYVGDENQGFLEMTGLNLMDKTFYVQGVTISFSIWDVGGDEKRSKDHIPIACKDAVAIL 178

Query: 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK 236
           FMFDLTSR TLN + GWYS+ARKWN+TAIPILIGTKFDDFVRLPP+LQWTI TQARAYAK
Sbjct: 179 FMFDLTSRSTLNRVFGWYSQARKWNKTAIPILIGTKFDDFVRLPPNLQWTIVTQARAYAK 238

Query: 237 AMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
            MKA+LFFSSATHNINVNKIFKFI+AKLFNLPW + RNLT+GEPIID+
Sbjct: 239 VMKASLFFSSATHNINVNKIFKFILAKLFNLPWKIDRNLTLGEPIIDY 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567378|ref|XP_003551897.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/290 (66%), Positives = 224/290 (77%), Gaps = 12/290 (4%)

Query: 1   MAKIIHEATENMT----QLCRRVVH-VNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQP 55
           MAKII ++    T    QLC R+VH VN+  +LF RVS   RF   IW+R+L+CS+G+  
Sbjct: 1   MAKIIGKSRRRRTTTTQQLCHRMVHHVNVHCNLFHRVSFLGRF---IWDRMLLCSLGRP- 56

Query: 56  AVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTS 115
              Y +L  R     +             + T  S  D+DSDLV+LKISLLGDC IGKTS
Sbjct: 57  --SYLRLPLRDPPPQATVHGGASMHGYPFTTTTPSPCDSDSDLVNLKISLLGDCHIGKTS 114

Query: 116 FVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174
           FV+KYVG+EQE RSLQM GLNL++KTL VQGARI+FSIWDV GD+ S   +P+ACKD+VA
Sbjct: 115 FVIKYVGDEQEKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDTGSLYQIPMACKDSVA 174

Query: 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY 234
           IL MFDLTSRCTLNS+VGWYS+ARKWNQ AIPILIGTKFDDFV+LPPD+QWTI TQARAY
Sbjct: 175 ILIMFDLTSRCTLNSVVGWYSKARKWNQIAIPILIGTKFDDFVKLPPDVQWTIVTQARAY 234

Query: 235 AKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           A+AM ATLFFSSATHNINVNKIFKFIMAKLFNLPW V+RNLT+GEP IDF
Sbjct: 235 ARAMNATLFFSSATHNINVNKIFKFIMAKLFNLPWKVERNLTLGEPTIDF 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648030|gb|ACU24471.1| unknown [Glycine max]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/280 (68%), Positives = 223/280 (79%), Gaps = 19/280 (6%)

Query: 14  QLCRRVVH--VNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESS 71
           QLC R+VH  VN+R +LF  +S   RF   IW+RIL+CS+G+     Y +L  R S    
Sbjct: 20  QLCNRMVHHHVNVRCNLFHSMSFLGRF---IWDRILLCSLGRP---SYLRLPLRDS---- 69

Query: 72  PAPDTMEAGLVEL-SRTFSSGY-----DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQ 125
           P P T+  G   L    F++       D+DSDLV+LKISLLGDC IGKTSFV+KYVG+EQ
Sbjct: 70  PPPATVNGGGGSLHGHPFTTTTTTIPCDSDSDLVNLKISLLGDCHIGKTSFVIKYVGDEQ 129

Query: 126 E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184
           E RSLQM GLNL++KTL VQGARI+FSIWDV GD  S   +P+ACKD+VAIL MFDLTSR
Sbjct: 130 EKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDPGSICQIPMACKDSVAILIMFDLTSR 189

Query: 185 CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 244
           CTLNS+VGWYS+ARKWNQTAIPILIGTKFDDFV+LPPD+QWTI TQARAYA+AMKATLFF
Sbjct: 190 CTLNSVVGWYSKARKWNQTAIPILIGTKFDDFVKLPPDVQWTIVTQARAYARAMKATLFF 249

Query: 245 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
           SSA+HNINVNKIFKFIMAKLFNLPW V+RNLT+GEP IDF
Sbjct: 250 SSASHNINVNKIFKFIMAKLFNLPWKVERNLTLGEPTIDF 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2160125	288	SGP1 [Arabidopsis thaliana (ta	0.992	0.979	0.607	1.1e-87
TAIR|locus:2093019	292	SGP2 [Arabidopsis thaliana (ta	0.669	0.650	0.711	1.2e-75
ASPGD|ASPL0000066888	314	spgA [Emericella nidulans (tax	0.760	0.687	0.470	4.1e-49
POMBASE|SPAC1565.06c	198	spg1 "GTPase Spg1" [Schizosacc	0.676	0.969	0.492	7.7e-48
DICTYBASE|DDB_G0291269	203	spg1 "small GTPase" [Dictyoste	0.693	0.970	0.479	2e-47
SGD|S000004529	245	TEM1 "GTP-binding protein of t	0.647	0.751	0.410	1.7e-34
FB|FBgn0086913	388	Rab26 "Rab26" [Drosophila mela	0.411	0.301	0.409	1.6e-15
SGD|S000001889	215	SEC4 "Rab family GTPase essent	0.616	0.813	0.301	3.3e-15
FB|FBgn0015793	219	Rab19 "Rab19" [Drosophila mela	0.556	0.721	0.299	1.4e-14
DICTYBASE|DDB_G0291738	196	rabG1 "Rab GTPase" [Dictyostel	0.577	0.836	0.275	1.8e-14

TAIR|locus:2160125 SGP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 175/288 (60%), Positives = 211/288 (73%)

Query:     1 MAKIIHEATENMTQLCRRVVHVNIRRSLXXXXXXXXXXXXXXXXXXLVCSIGKQPAVRYQ 60
             MA+ +HE    +T  CR++VHVN +  +                  + CS   +  + Y+
Sbjct:     1 MAEKVHEIAGKITPFCRKIVHVNRKWRIIERVSIFGDFFRFLWRKIVSCSSIIEKPILYR 60

Query:    61 KLTRRSSSESSPAPDTMEAGLVELS---RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV 117
             ++  + SS +    D  +    E +   R F S   +DSDLVSLKISLLGDCQ GKT+FV
Sbjct:    61 RIVHKISSTAGDIFDGDDDTTTEPTVSGRRFGSS--SDSDLVSLKISLLGDCQTGKTTFV 118

Query:   118 VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFDHVPIACKDAVAIL 176
             VKYVG+E +  L+M GLNL++KT  VQG  I+FSIWDVGGD  RS DH+PIACKDAVAIL
Sbjct:   119 VKYVGDENQSFLEMTGLNLMDKTFYVQGVTISFSIWDVGGDEKRSKDHIPIACKDAVAIL 178

Query:   177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK 236
             FMFDLTSR TLNS+ GWYS+ARKWN+TAIPILIGTKFDDFVRLPP+LQWTI TQARAYAK
Sbjct:   179 FMFDLTSRSTLNSVFGWYSQARKWNKTAIPILIGTKFDDFVRLPPNLQWTIVTQARAYAK 238

Query:   237 AMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284
              M A+LFFSSATHNINVNKIFKFI+A+LFNLPW + RNLT+GEPIID+
Sbjct:   239 VMNASLFFSSATHNINVNKIFKFILARLFNLPWKIDRNLTLGEPIIDY 286

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2093019 SGP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
 Identities = 138/194 (71%), Positives = 169/194 (87%)

Query:    94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAF 150
             +DSDLVSLKISLLGD +IGKTSF+ KYVG E+E   R L+  G+N  +KTL + GARI++
Sbjct:   100 SDSDLVSLKISLLGDPEIGKTSFLAKYVGEEKEVEMRELEK-GINCTDKTLYMGGARISY 158

Query:   151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIG 210
             SIW++ G  RS D +P+ACKD+VAILFMFDLTSRCTLNS++ WY +ARK NQTAIP+++G
Sbjct:   159 SIWELEGAERSRDQIPVACKDSVAILFMFDLTSRCTLNSVISWYQQARKSNQTAIPVMVG 218

Query:   211 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT 270
             TKFD+F++LP DLQWTIA+QAR YAKA+ ATLFFSSA++NINVNKIFKF+ AKLF+LPWT
Sbjct:   219 TKFDEFIQLPIDLQWTIASQARTYAKALNATLFFSSASYNINVNKIFKFVTAKLFDLPWT 278

Query:   271 VKRNLTIGEPIIDF 284
             V+RNLTIGEPIIDF
Sbjct:   279 VERNLTIGEPIIDF 292

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ASPGD|ASPL0000066888 spgA [Emericella nidulans (taxid:162425)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 102/217 (47%), Positives = 140/217 (64%)

Query:    67 SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQ 125
             + +  P P T       LS T      T  + V +K+ ++GD QIGKTS +VKYV G+  
Sbjct:    93 TQDPQPQPPTSSRPSSGLSGTQKQPAQTTKNSVVIKVGMVGDAQIGKTSLMVKYVEGSWD 152

Query:   126 ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185
             E  +Q  G+N + KT+ ++   I FSIWD+GG     + +P+ C DAVAILFMFDLT + 
Sbjct:   153 EDYIQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDLTRKS 212

Query:   186 TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 245
             TLNSI  WY + R +N+TAIP L+GTK+D FV  P + Q  I+ QA+ +AKAMKA+L FS
Sbjct:   213 TLNSIKEWYRQGRGFNKTAIPFLVGTKYDHFVNFPREDQEEISIQAKRFAKAMKASLIFS 272

Query:   246 SATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPII 282
             S +H+INV KIFK ++AK F+L  T+     IGEP++
Sbjct:   273 STSHSINVQKIFKIVLAKAFDLKCTIPEIENIGEPLL 309

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0031028 "septation initiation signaling cascade" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

POMBASE|SPAC1565.06c spg1 "GTPase Spg1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 95/193 (49%), Positives = 134/193 (69%)

Query:    93 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 151
             D   + V++K+ ++GD  IGKTS +V YV G+  E S Q  G+N + KT+ ++   I FS
Sbjct:     3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62

Query:   152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGT 211
             IWD+GG     + +P+ C DAVAILFMFDL+ + TLNSI  WY +AR +N+TA+PILIGT
Sbjct:    63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGT 122

Query:   212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
             K+D F+  P + Q  I  QAR YAKAMKA+L F S +H+INV KIFK ++AK+F+L  T+
Sbjct:   123 KYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTI 182

Query:   272 KRNLTIGEPIIDF 284
                  +G+PI+++
Sbjct:   183 PEIKNVGDPILEY 195

GO:0003924 "GTPase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IC

GO:0005816 "spindle pole body" evidence=IDA

GO:0031028 "septation initiation signaling cascade" evidence=IGI

GO:0033205 "cell cycle cytokinesis" evidence=IMP

GO:0034613 "cellular protein localization" evidence=IMP

GO:0044732 "mitotic spindle pole body" evidence=IDA

DICTYBASE|DDB_G0291269 spg1 "small GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 95/198 (47%), Positives = 135/198 (68%)

Query:    88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGA 146
             F+   DT  + V +K+ ++GD QIGKTS +VKYV G   E  +Q  G+N + KT+ ++G 
Sbjct:     6 FTGSSDTKKNNVVVKVGMVGDSQIGKTSLMVKYVEGTFDEDYIQTLGVNFMEKTISIRGT 65

Query:   147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 206
              I FSIWD+GG     + +P+ C DAVAILFMFDL+ + TLNS+  WY +AR +N+TAIP
Sbjct:    66 EITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIP 125

Query:   207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
              LIGTKFD F   P + Q  I  QAR +A AMK+ L F S +H+INV KIFK +++K F+
Sbjct:   126 FLIGTKFDVFATKPIEEQEEITKQARKFASAMKSPLIFCSTSHSINVQKIFKIVISKAFD 185

Query:   267 LPWTVKRNLTIGEPIIDF 284
             L  T+ + + +GEP++++
Sbjct:   186 LNCTIPKVVGVGEPLLEY 203

GO:0005813 "centrosome" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007096 "regulation of exit from mitosis" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000004529 TEM1 "GTP-binding protein of the Ras family involved in M-phase termination" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 76/185 (41%), Positives = 114/185 (61%)

Query:    99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 157
             V +++ L+GD Q+GKTS +VKYV N  ++   Q  G+N + + + ++   I FSI D+GG
Sbjct:    19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78

Query:   158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
                  + +PIA   +  I+F+FDLT   TL+SI  WY +A   N +AIPIL+GTK+D  +
Sbjct:    79 QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLI 138

Query:   218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTI 277
              L P+ Q  I+  +  YA+ M A L F S   +IN+ KIFK  +AK+FNL  T+     I
Sbjct:   139 DLDPEYQEQISRTSMKYAQVMNAPLIFCSTAKSINIQKIFKIALAKIFNLTLTIPEINEI 198

Query:   278 GEPII 282
             G+P++
Sbjct:   199 GDPLL 203

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005816 "spindle pole body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007096 "regulation of exit from mitosis" evidence=TAS

GO:0051301 "cell division" evidence=IEA

FB|FBgn0086913 Rab26 "Rab26" [Drosophila melanogaster (taxid:7227)]

 Score = 200 (75.5 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 50/122 (40%), Positives = 70/122 (57%)

Query:    97 DLVSLKISLLGDCQIGKTSFVVKY-VGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
             D V+ K  LLGD  +GKTSF+VKY  G  +  S     G+ L NK ++V G R+   IWD
Sbjct:   187 DTVNHKTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWD 246

Query:   155 VGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTK 212
               G  R F  V  A  +DA A+L ++D+T++ T ++I  W  E R++ Q  + I LIG K
Sbjct:   247 TAGQER-FRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNK 305

Query:   213 FD 214
              D
Sbjct:   306 AD 307

GO:0003924 "GTPase activity" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=ISS

GO:0031226 "intrinsic to plasma membrane" evidence=ISS

GO:0017157 "regulation of exocytosis" evidence=ISS

GO:0031982 "vesicle" evidence=ISS

SGD|S000001889 SEC4 "Rab family GTPase essential for exocytic secretion and autophagy" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 57/189 (30%), Positives = 96/189 (50%)

Query:    79 AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLI 137
             +GL  +S +  +G   DS    +KI L+GD  +GK+  +V++V ++   S +   G++  
Sbjct:     2 SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58

Query:   138 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 196
              KT+ + G ++   +WD  G  R F  +  A  + A+ I+ ++D+T   T  +I  W+  
Sbjct:    59 IKTVDINGKKVKLQLWDTAGQER-FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT 117

Query:   197 ARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255
               +  N  A  +L+G K D   R+        A Q  A AK +      SSA ++ NVN+
Sbjct:   118 VNEHANDEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKNDDNVNE 171

Query:   256 IFKFIMAKL 264
             IF F +AKL
Sbjct:   172 IF-FTLAKL 179

GO:0007107 "membrane addition at site of cytokinesis" evidence=IEP;IGI;IMP

GO:0006914 "autophagy" evidence=IGI;IMP

GO:0031982 "vesicle" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA;TAS

GO:0007121 "bipolar cellular bud site selection" evidence=TAS

GO:0030478 "actin cap" evidence=TAS

GO:0030133 "transport vesicle" evidence=TAS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IMP

GO:0006893 "Golgi to plasma membrane transport" evidence=IMP

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006887 "exocytosis" evidence=IEA;IDA

GO:0031321 "ascospore-type prospore assembly" evidence=IMP

GO:0000131 "incipient cellular bud site" evidence=IDA

GO:0000910 "cytokinesis" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IDA

FB|FBgn0015793 Rab19 "Rab19" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 50/167 (29%), Positives = 82/167 (49%)

Query:   102 KISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
             KI L+GDC  GKT  V ++  GN  ER     G++   KT+ V+G +I   IWD  G  R
Sbjct:    23 KIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQIWDTAGQER 82

Query:   161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRL 219
                      + A  +L ++D+T R + +++  W  E R++  +  + IL+G K D   + 
Sbjct:    83 FRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQR 142

Query:   220 PPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 264
               D +     +AR   + +   LF   +SA  N+NV   F+ +  +L
Sbjct:   143 EVDFE-----EARQMCQYIPEILFVMETSAKENMNVEDAFRCLANEL 184

GO:0005525 "GTP binding" evidence=ISS

GO:0005097 "Rab GTPase activator activity" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

DICTYBASE|DDB_G0291738 rabG1 "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 48/174 (27%), Positives = 84/174 (48%)

Query:    95 DSDLVSLKISLLGDCQIGKTSFVVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSI 152
             DSD+   KI L+GD  +GKTS ++++    N QE S+ M  ++  NK + + G      I
Sbjct:     3 DSDV--FKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQI 60

Query:   153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGT 211
             WD  G  R         + A  +L  +D+T + T N++  W  E +++    +  +L+G 
Sbjct:    61 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGN 120

Query:   212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
             K D       D +   A+ A+ YA  +      +SAT  +NV + F  +  +++
Sbjct:   121 KCD-----LEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIY 169

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00111119 hypothetical protein (278 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-110
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-25
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-24
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-18
pfam00071	162	pfam00071, Ras, Ras family	7e-17
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-15
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-14
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-14
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-14
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-13
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-13
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	8e-13
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-12
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	5e-12
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-11
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-11
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-11
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-11
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-10
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-10
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-10
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	7e-10
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	9e-10
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-09
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-08
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-08
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-08
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-08
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	7e-08
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	7e-08
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-07
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-07
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-07
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-07
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-07
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-07
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-07
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-07
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-07
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-07
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-07
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	5e-07
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-07
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-06
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-06
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-06
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-05
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-05
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-05
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	8e-05
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-04
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-04
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	6e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	7e-04
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	7e-04
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	0.003

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score =  317 bits (813), Expect = e-110
 Identities = 108/182 (59%), Positives = 134/182 (73%), Gaps = 1/182 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LKI LLGD QIGKTS +VKYV  E  E  +Q  G+N + KT+ ++G  I FSIWD+GG  
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
              + +P+ CKDAVAILFMFDLT + TLNSI  WY +AR +N+TAIPIL+GTK+D F  L
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADL 120

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGE 279
           PP+ Q  I  QAR YAKAMKA L F S +H+INV KIFKF++AK+F+LP T+   LT+GE
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKVFDLPLTIPEILTVGE 180

Query: 280 PI 281
           PI
Sbjct: 181 PI 182

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 96.7 bits (241), Expect = 3e-25
 Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG-DS 159
           K+ ++GD   GK+S + + VG E     L++ G  L   TL V G     +IWD GG + 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLN---SIVGWYSEARKWNQTAIP-ILIGTKF 213
             F+H  I  K A AIL ++DLT R +LN    ++ W    RK     IP IL+G K 
Sbjct: 61  LKFEH-IIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLG-GKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 96.4 bits (241), Expect = 1e-24
 Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 9/163 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+GD  +GKTS ++++V N+   + +   G++  +KT+ V G ++   IWD  G  
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
           R F  +     + A   + ++D+T+R +  ++  W +E +++    IPI L+G K D   
Sbjct: 61  R-FRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSD--- 116

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
            L  + Q +   +A+ +AK      F +SA    NV++ F+ +
Sbjct: 117 -LEDERQVSTE-EAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 15/165 (9%)

Query: 102 KISLLGDCQIGKTSFVVKYVGN----EQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           K+ LLG+ ++GKTS V++YV N    + E + Q +      KT+ + G RI  +IWD  G
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQAS---FFQKTVNIGGKRIDLAIWDTAG 58

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI-GTKFDDF 216
             R     PI  +DA   + ++D+T   +   +  W  E ++     I ++I G K  D 
Sbjct: 59  QERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNK-IDL 117

Query: 217 VRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIFKFI 260
            R     Q  ++  +A  YAK++ A  F +SA     + ++F  +
Sbjct: 118 ER-----QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 75.6 bits (187), Expect = 7e-17
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK+S ++++  N+  E  +   G++   KT+ V G  +   IWD  G  R
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 218
            F  +     + A   L ++D+TSR +  ++  W  E  +     +PI L+G K D    
Sbjct: 61  -FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCD---- 115

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           L      +   +  A AK +      +SA  N NV + F
Sbjct: 116 LEDQRVVSTE-EGEALAKELGLPFMETSAKTNENVEEAF 153

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 71.0 bits (175), Expect = 4e-15
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+GD  +GK+S + ++   +  E+     G++   KT+ V G R+   IWD  G  
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 160 R------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTK 212
           R      S+       + AV  L ++D+T+R +  ++  W  E R++    + I L+G K
Sbjct: 61  RFRSITSSY------YRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNK 114

Query: 213 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
            D    L    Q +   +A A+A+      F +SA  N NV + F+ +  ++   
Sbjct: 115 SD----LEEQRQVSR-EEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 70.9 bits (173), Expect = 1e-14
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 18/203 (8%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARI 148
           SSG  +  DL S KI L+GD  +GK+S +V ++ +  E      G++   K L V G R+
Sbjct: 4   SSGQSSGYDL-SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRL 62

Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKW--NQTAI 205
             +IWD  G  R         ++A  I+ ++D+T R T  ++   W  E   +  NQ  +
Sbjct: 63  KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV 122

Query: 206 PILIGTKFDDFVRLPPDLQWTIA-TQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
            +L+G K D       + +  ++  +  A AK         SA    NV + F+ +  K+
Sbjct: 123 KMLVGNKVDR------ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176

Query: 265 FNLP-------WTVKRNLTIGEP 280
             +P         VKRN+   +P
Sbjct: 177 MEVPSLLEEGSTAVKRNILKQKP 199

Length = 211

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 68.0 bits (167), Expect = 4e-14
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 7/167 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
             K+ LLGD  +GK+S V+++V NE  E      G   + +T+ +    + F IWD  G 
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
            R     P+  + A A + ++D+TS  +      W  E ++      +  L G K D   
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKAD--- 117

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
            L    Q +   +A+ YA         +SA    NVN++F  I  KL
Sbjct: 118 -LESKRQVSTE-EAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 9/161 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
           LKI L+GD  +GK+S ++++  +  +  L    G++   KT+ V G ++  +IWD  G  
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFV 217
           R         + A  ++ ++D+T R T +++  W +E   +  N  A+ +L+G K D   
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
           R           + + +A+        +SA   I V + F+
Sbjct: 121 REVT------REEGQKFARKHNMLFIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 68.1 bits (166), Expect = 1e-13
 Identities = 47/200 (23%), Positives = 74/200 (37%), Gaps = 15/200 (7%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLI-NKTLMVQGARIAFSIWDVGG 157
              KI +LGD  +GKT+ + + VG+E          NL   KT+      I   +WD  G
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
                   P   + A  IL ++D T R  +      W  E R+     +PI L+G K D 
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 216 FVR----------LPPDLQWTIATQARAYAKAMKATLFFSSA--THNINVNKIFKFIMAK 263
           F            L  ++   +        +     L  +SA      NVN++FK ++ K
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 264 LFNLPWTVKRNLTIGEPIID 283
           L      +     + +    
Sbjct: 184 LLEEIEKLVLKNELRQLDRL 203

Length = 219

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 66.4 bits (162), Expect = 3e-13
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           K+ L+GD  +GKT  +V++          +   G+   NK + V G ++   IWD  G  
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 214
           R F  V  A  +DA A+L ++D+T++ + ++I  W +E  ++ Q+ + I L+G K D
Sbjct: 62  R-FRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKAD 117

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 64.6 bits (158), Expect = 8e-13
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+  LGD  +GKTS + +++ +  +   Q   G++ ++KT+ V    +   +WD  G  R
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVRL 219
               +P   +D+   + ++D+T+R + ++   W  + R +     I +L+G K D    L
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTD----L 117

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
               Q +   +    AK   A    +SA    NV ++FK I   L
Sbjct: 118 SDKRQVSTE-EGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI LLGD  +GK+  V +++ +  + + L    L L       +G  I    WD  G  
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R           A A + +FD+T + T  ++  WY E R++      I++  K       
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKI------ 114

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
             DL  ++  +   +A+     L++ SA    NV K+F+
Sbjct: 115 --DLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQ 151

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 62.5 bits (152), Expect = 5e-12
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 102 KISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI L+GD  +GKT  V ++  G   ER     G++   KTL +QG R+   IWD  G  R
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFD 214
                    + A   +  +D+T R +  S+  W  E  K+  + +  +LIG K D
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCD 119

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 7/160 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ ++G+  +GKTSF+ +Y  +    + +   G++   KT+     RI   IWD  G  
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 218
           R         + A+  + M+D+T+  + N++  W ++ + ++   A  IL+G K D    
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD---- 117

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
              D +   A + R  A  +    F +SA  NINV ++F+
Sbjct: 118 -MEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFE 156

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+GD  +GK++ + ++  NE    S    G+    +TL V+G  +   IWD  G  
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI-GTKFD-DFV 217
           R         + AV  L ++D+T R T +++  W  E R    + I I++ G K D + +
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
           R   +         +A A+    +   +SA    NV K F+ I+ +++++
Sbjct: 133 RSVAE------EDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176

Length = 216

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 60.6 bits (147), Expect = 4e-11
 Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ ++GD  +GK+S ++++  N      +   G++   +T+ + G R+   IWD  G  R
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220
                    +    ++ ++D+T+  +  ++  W  E  +       +L+G K DD     
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD----- 122

Query: 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF-----KFIMAKLFNLP 268
           P+ +      A  +A  M  +LF +SA  NINV ++F       + AK  NL 
Sbjct: 123 PERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLA 175

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 59.6 bits (144), Expect = 6e-11
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 7/159 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            ++ L+GD  +GKT  + ++  NE   S +   G++   KT+ V G ++   IWD  G  
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 218
           R         + A  I  ++D++S  +   I+ W S+  ++    +  ILIG K D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD---- 116

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
                +     Q    AK      F +SA  N N+ + F
Sbjct: 117 -EEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           KI L+GD Q GKT+ +  +  +    +           +  V   RI  S+WD  G S  
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSG-SPY 61

Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD----- 214
           +D+V P++  D+ A+L  FD++   TL+S++  W  E R++      +L+G K D     
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDL 121

Query: 215 -DFVRLPPDLQWTIAT-QARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 264
                L    Q  ++  Q R  AK + A  +   S+ T   +V  +F+  MA L
Sbjct: 122 STLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE--MATL 173

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK+  ++++  +    S +   G++   +T+ + G +I   IWD  G  R
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64

Query: 161 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
            F  +  +  + A+ I+ ++D+T   +  +I  W     +  ++    +L+G K D    
Sbjct: 65  -FRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCD---- 119

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
           +      +   +  A A+        +SA  NINV + F   +AK
Sbjct: 120 MEEKRVVSKE-EGEALAREYGIKFLETSAKANINVEEAF-LTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 18/168 (10%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQ----------GARIA 149
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++              R+ 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP--I 207
             +WD  G  R         +DA+  L MFDLTS  +  ++  W S+ +       P  +
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255
           LIG K D      PD +     QAR  A       F +SA    NV K
Sbjct: 125 LIGNKAD-----LPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 56.4 bits (137), Expect = 7e-10
 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 10/166 (6%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +KI ++GD  +GKT  ++ Y  N+          +  +  + V G ++   +WD  G   
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQE- 59

Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD---- 214
            +D + P++       L  F + S  +  ++   WY E + +      IL+GTK D    
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDD 119

Query: 215 -DFVRLPPDLQWTIAT-QARAYAKAMKATLFFS-SATHNINVNKIF 257
            + ++     Q  I   +    AK + A  +   SA     + ++F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 56.3 bits (136), Expect = 9e-10
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 24/176 (13%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI ++GD  +GKT    ++      ER+    G++   +T+ + G RI   +WD  G  R
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 161 SFDH--VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKF 213
            F    V    ++  A++F++D+T+  + +S+  W  E     Q ++P     IL+G K 
Sbjct: 64  -FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECE---QHSLPNEVPRILVGNKC 119

Query: 214 D--DFVRLPPDLQWTIATQARAYAKAMKATLFFSSA---THNINVNKIFKFIMAKL 264
           D  + +++P DL       A+ +A A    LF +SA   + N +V  IF  +  KL
Sbjct: 120 DLREQIQVPTDL-------AQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+G+  +GKT  V ++  G          G++ + KT+ ++G +I   IWD  G  
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A A++  +D+T   +   +  W  E  ++ N   I IL+G K D    
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL--- 124

Query: 219 LPPDLQWTIATQ-ARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                +  ++ Q A  ++ A       +SA  + NV K+F  +  +L
Sbjct: 125 ---AERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           LK  L+GD  +GKTS +V Y  N           +  +  ++V G  +   + D  G   
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD- 59

Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVR 218
            FD + P+   D    L  F + +  +  +I   W  E RK N  A  IL+GT+ D  +R
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD--LR 117

Query: 219 LPPDLQWTIAT---------QARAYAKAMKATLFF--SSATHNINVNKIF 257
              ++   +A          +A+A A+ + A  +   S+ T   N+ ++F
Sbjct: 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK-NLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD   GKT+FV +++  E E+  +   G+ +          +I F++WD  G  +
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 161 SFDHVPIACKDAVAI-----LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 214
                    +D   I     + MFD+TSR T  ++  W+ +  +  +  IPI L G K D
Sbjct: 62  -----FGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD 115

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           L++ ++G   +GKTS + ++  +   E      G++   KT+ ++G +I   IWD  G  
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 160 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R F+ +  A  + A  I+ ++D+T + T + +  W     K+ ++ A  +L+G K D   
Sbjct: 61  R-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD--- 116

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF-KFIMAKLFNLPWTVKRN 274
               D + T   Q   +A+ +    F  +SA  N NV++IF K +   L  +P  + RN
Sbjct: 117 -CETDREIT-RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRN 173

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 11/166 (6%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLIN-----KTLMVQGARIAFSIWDV 155
           +K+ +LG   +GKTS V +YV     R L     N I      K ++V    +   IWD 
Sbjct: 1   VKVVMLGKESVGKTSLVERYV---HHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDT 57

Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 214
            G  R      I  + A A +  +DLT   +      W  E +   +    I L GTK  
Sbjct: 58  AGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKS- 115

Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
           D +     L+       + +A  +KA  F +S+    NV+++F+ +
Sbjct: 116 DLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 11/171 (6%)

Query: 102 KISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS 159
           ++ ++GD  +GK+S + ++  G   E S    G++  ++ + ++ G RI   +WD  G  
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP--ILIGTKFDDF 216
           R F  +  +  +++V +L +FD+T+R +   +  W  EAR   Q   P  IL+G K D  
Sbjct: 64  R-FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD-- 120

Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
             L    Q T   +A   AK +      +SA    NV + F+ +  +++  
Sbjct: 121 --LESQRQVTRE-EAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYER 168

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 28/172 (16%)

Query: 101 LKISLLGDCQIGKT---------SFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFS 151
           +K+  +G+  +GK+          FV KY        L   G++   K + V+   +  +
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKY--------LPTIGIDYGVKKVSVRNKEVRVN 52

Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT------AI 205
            +D+ G     +      KD   +L ++D+T R +  ++  W  E ++           +
Sbjct: 53  FFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV 112

Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            ++   K D               + R +A++     F +SA     VN++F
Sbjct: 113 VVVCANKIDLTKHRAVSED-----EGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +   IWD  G  
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 160 R 160
           R
Sbjct: 66  R 66

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 133 GLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG 192
           G++ ++KTL +    +   +WD  G  R    +P   +D+ A + ++D+T+R +  +   
Sbjct: 14  GIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK 73

Query: 193 WYSEA-RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 251
           W  +   +  +  I  L+G K D       DL+     +    A+        +SA    
Sbjct: 74  WIQDILNERGKDVIIALVGNKTD-----LGDLRKVTYEEGMQKAQEYNTMFHETSAKAGH 128

Query: 252 NVNKIFKFIMAKLFNL 267
           N+  +FK I AKL NL
Sbjct: 129 NIKVLFKKIAAKLPNL 144

Length = 176

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V G  +   IWD  G  
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 214
           R F  V  +  + A   L ++D+TSR + N++  W ++AR   +   + IL+G K D
Sbjct: 61  R-FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKD 116

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 10/167 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGG 157
           +K+ ++G+  +GK+S + ++V     +   +  G++ + K + ++     +   +WD  G
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
               FD +  A  + A A + +F  T R +  +I  W  +          +L+ TK D  
Sbjct: 61  -QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKID-- 117

Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
             L      T   +A A AK ++  LF +S   + NV ++F+++  K
Sbjct: 118 --LLDQAVIT-NEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI L+GD  +GK++ + ++  NE    S    G+    +T+ + G  I   IWD  G  R
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 161 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 218
            +  +  A  + AV  L ++D+T + T  ++  W  E R    + I I L+G K D    
Sbjct: 65  -YRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSD---- 119

Query: 219 LPPDLQWTIATQ-ARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
           L       + T+ A+A+A+    +   +SA    NV + FK ++ +++
Sbjct: 120 LRHLRA--VPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK  L+GD  +GK   +        E       G++    T+++ G R+   +WD  G  
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R         + A  I+ ++D+T+R + + I  W  E  +       IL+G       RL
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGN------RL 120

Query: 220 PPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIF 257
               +  +AT QA+AYA+    T F  S   N N+ + F
Sbjct: 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 12/164 (7%)

Query: 105 LLGDCQIGKTSFVVKYVGNEQERSLQMAG--LNLINKTLMVQGARIAFSIWDVGG----- 157
           ++G   +GK+S +   +G E      + G   +       +   ++   + D  G     
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
                +   +  + A  IL + D T R +            +     I IL+G K D   
Sbjct: 62  GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPI-ILVGNKID--- 117

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
            L       +              +F  SA     V+++F+ ++
Sbjct: 118 LLEEREVEELLRLEELAKIL-GVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           KI ++GD Q GKT+ +  +  +    S           +  +   RI  ++WD  G S  
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSG-SSY 61

Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
           +D+V P+A  D+ A+L  FD++   TL+S++  W  E +++   A  +L+G K D
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLD 116

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 13/126 (10%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWD 154
            ++   K+ L+GD  +GKT+FV +++  E E + +   G+ +           I F++WD
Sbjct: 5   DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWD 64

Query: 155 VGGDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-L 208
             G       R   ++   C    AI+ MFD+TSR T  ++  W+ +  +  +  IPI L
Sbjct: 65  TAGQEKFGGLRDGYYIKGQC----AII-MFDVTSRITYKNVPNWHRDIVRVCEN-IPIVL 118

Query: 209 IGTKFD 214
           +G K D
Sbjct: 119 VGNKVD 124

Length = 215

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ ++GD  +GKT  + ++  +  +++ +   G++   +   V G   +  +WD  G  R
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVR 218
                    + A AI+ +FDLT   +L     W  +A K N   + +  L+GTK D    
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKD---L 118

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
             P     +   A   A+ MKA  +  SA    NV   F  + +  F L
Sbjct: 119 SSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFEL 167

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 12/170 (7%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 4   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 62

Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD-- 214
           S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D  
Sbjct: 63  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122

Query: 215 ----DFVRLPPDLQWTIA-TQARAYAKAMKATLFFS-SATHNIN-VNKIF 257
                 V L    Q  ++  Q    AK + A  +   SA  + N V  IF
Sbjct: 123 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 172

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 18/167 (10%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGGD 158
           LK+ +LGD  +GKTS + +YV N++  +   A  G + + K + V    +   IWD  G 
Sbjct: 1   LKVIILGDSGVGKTSLMNQYV-NKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQ 59

Query: 159 SRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGTK 212
            R F  + +A  + A   + ++D+T+  +  S+  W  E    A   +    P +++G K
Sbjct: 60  ER-FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNK 118

Query: 213 FDDFVRLPPDLQWTIAT-QARAYAKAMK-ATLFFSSATHNINVNKIF 257
            D       + +  ++T +A+ + K+      F +SA   INV++ F
Sbjct: 119 IDL------EEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAF 159

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGA-RIAFSIWDVGGD 158
           +KI +LGD   GKTS + ++      +S  Q  GL+  ++ + + G+  +   +WD+GG 
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP----ILIGTKFD 214
                 +      A A+  ++D+T+  +  ++  W S  +K N+ +      +L+G K D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
               L  + Q T    AR +A+       F SA     V   F+ I A+L  +
Sbjct: 121 ----LEHNRQVTAEKHAR-FAQENDMESIFVSAKTGDRVFLCFQRIAAELLGV 168

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           LK+ LLGD  +GKTS + +Y+    + ++   G     K    Q      SIWD  G  +
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR------KWNQTAIPILIGTKFD 214
                 + C+ A A++  +D+++  +L  +     E R        N+  +  ++G K D
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEEL-----EDRFLGLTDTANEDCLFAVVGNKLD 111

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 13/172 (7%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE---QERSLQMAGLNLINKTLMV--QGARIAFSIWDV 155
            + +++GD  +GK++ V  +  +    Q+      G +L+ KT+ V      +   I+D 
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKF 213
            G     D V    +    +  ++D+T+  + N+   W +  R  +       +L+G K 
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
           D   R   D     A QA+A A+A     + +SA   +     F  + A+ F
Sbjct: 121 DLTDRREVD-----AAQAQALAQANTLKFYETSAKEGVGYEAPFLSL-ARAF 166

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 36/167 (21%), Positives = 80/167 (47%), Gaps = 9/167 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +    S +   G++   +T+ + G  +   IWD  G  
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 160 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R F  +  +  + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   
Sbjct: 63  R-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD--- 118

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
               D +    T+A+ +A  +      +SA +  NV + F  +  ++
Sbjct: 119 --LTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWD 154
            D  S K+ ++GD   GKT+FV +++  E E +     G+ +          +I F  WD
Sbjct: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68

Query: 155 VGGDSRSFDHVPIACKDAVAI-----LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-L 208
             G  + F       +D   I     + MFD+T+R T  ++  W+ +  +  +  IPI L
Sbjct: 69  TAGQEK-FG----GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVL 122

Query: 209 IGTKFD 214
            G K D
Sbjct: 123 CGNKVD 128

Length = 219

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  R
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD-DFV 217
            F  V  +  + A   L ++D+T R T N +  W ++AR   N   +  LIG K D +  
Sbjct: 64  -FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           R   D+ +    +A+ +A          SA    NV   F
Sbjct: 123 R---DVTY---EEAKQFADENGLLFLECSAKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 24/179 (13%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDV--- 155
            K+ ++GD  +GKTS + +YV     +  +   G++   K +      +    +WD+   
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 156 ---GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY----SEARKWNQTAIP-I 207
              GG +R +       K AV  + +FD+T   T  +++ W     S+    N   IP +
Sbjct: 61  ERFGGMTRVYY------KGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPAL 114

Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLF 265
           L+  K D    L  +       Q   + K      +F +SA  NIN+ +  +F++  + 
Sbjct: 115 LLANKCD----LKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL 169

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 21/165 (12%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-----GLNLINKTLMVQGARIAFSIWDVG 156
           K  ++GD  +GK+  ++++     ++  Q       G+    + + + G +I   IWD  
Sbjct: 6   KYIIIGDTGVGKSCLLLQF----TDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTA 61

Query: 157 GDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 214
           G   SF  +  +  + A   L ++D+T R T N +  W  +AR+ + + + I LIG K D
Sbjct: 62  G-QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIF 257
               L    + +   +  A+A+  +  L F  +SA    NV + F
Sbjct: 121 ----LESRREVS-YEEGEAFAR--EHGLIFMETSAKTASNVEEAF 158

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 13/165 (7%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           KI ++GD  +GK++ + + +GN+            N +   +   G    F++ D  G  
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILI-GTKFD-D 215
                  +  +   + L +FD+          +     E     ++ +PI++ G K D  
Sbjct: 63  DYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLR 122

Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
             +L   +          +AK     +   SA    N++  FK +
Sbjct: 123 DAKLKTHVA-------FLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 105 LLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 163
           ++GD  +GKT  ++ Y  N   E  +     N     + V G  +   +WD  G    +D
Sbjct: 3   VVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAG-QEDYD 60

Query: 164 HV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD-----DF 216
            + P++  D    L  F + S  +  ++   WY E + +      IL+GTK D       
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120

Query: 217 VRLPPDLQWTIAT--QARAYAKAMKATLFFS-SATHNINVNKIF 257
           +      +    T  Q +A AK + A  +   SA     V ++F
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 12/172 (6%)

Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           +V  K+ L+GD Q GKT+ +     +    +            L  +  R+  S+WD  G
Sbjct: 11  VVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG 70

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFD- 214
            S  +D+V P+   D+ A+L  FD++     +S +  W +E   +  +   +LIG K D 
Sbjct: 71  -SPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDL 129

Query: 215 -----DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFK 258
                  + L    Q  I+  Q  A AK + A  +   S+ T   +++ IF+
Sbjct: 130 RTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFR 181

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 18/169 (10%)

Query: 106 LGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS----- 159
           +GD   GKT+FV +++  E E+      G+ +           I F++WD  G       
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R   ++   C    AI+ MFD+T+R T  ++  W+ +  +  +    +L G K D   R 
Sbjct: 61  RDGYYIQGQC----AII-MFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR- 114

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
                  +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 115 ------KVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 4/117 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  ++++     Q       G+    + + +    I   IWD  G  
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG-Q 65

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 214
            SF  +  +  + A   L ++D+T R T N +  W  +AR+  N     +LIG K D
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Length = 210

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 1   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 59

Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD--- 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D   
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119

Query: 215 ---DFVRLPPDLQWTIA-TQARAYAKAMKATLFFS-SATHNINVNKIF 257
                 +L       I   Q  A AK + A  +   SA     +  +F
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 36/173 (20%)

Query: 101 LKISLLGDCQIGKTSFVVK-----YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
           LK+ ++G+ + GK++ V +     YV  E     +        K ++V G      I D 
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRF------KKEVLVDGQSHLLLIRDE 54

Query: 156 GGDSRSFDHVPIA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGT 211
           GG        P A       A++F+F L    +  ++   Y +   + N + IP IL+GT
Sbjct: 55  GG-------APDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGT 107

Query: 212 KFDDFV-----RLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFK 258
           +  D +     R+  D       +AR     MK   ++ + AT+ +NV ++F+
Sbjct: 108 Q--DAISASNPRVIDD------ARARQLCADMKRCSYYETCATYGLNVERVFQ 152

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           + +KI ++GD   GKT  ++ Y      E  +     N +    +  G  I  ++WD  G
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAG 61

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD- 214
               +D + P++  D   IL  + + +  +L+++   WY E   +      +L+G K D 
Sbjct: 62  -QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120

Query: 215 ----DFVRLPPDLQWTIAT--QARAYAKAMKATLF-FSSATHNINVNKIFKF 259
               + V           T  Q  + AK++ A  +   SA    NV+++F  
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDA 172

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 1/115 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K   +GD  +GKT  ++ Y  N           +  +  ++V G  +   +WD  G   
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGTKFD 214
                P++ + A   L  F L S+ +  N +  W  E R +      +L+GTK D
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLD 116

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG1673	205	consensus Ras GTPases [General function prediction	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PLN03110	216	Rab GTPase; Provisional	99.98
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.98
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
PTZ00369	189	Ras-like protein; Provisional	99.98
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.98
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.98
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
PLN03108	210	Rab family protein; Provisional	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
PLN03118	211	Rab family protein; Provisional	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
PTZ00133	182	ADP-ribosylation factor; Provisional	99.95
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.94
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
PTZ00099	176	rab6; Provisional	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.93
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.93
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.91
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.91
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.91
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.91
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.91
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.91
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.91
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.91
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.9
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.9
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.89
PRK15494	339	era GTPase Era; Provisional	99.89
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.88
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.87
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.87
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.87
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.86
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.86
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.86
PRK04213	201	GTP-binding protein; Provisional	99.86
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.86
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.86
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.85
PRK03003	472	GTP-binding protein Der; Reviewed	99.85
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.85
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.84
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.84
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.84
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.83
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.83
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.83
cd00881	189	GTP_translation_factor GTP translation factor fami	99.83
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.83
PRK11058	426	GTPase HflX; Provisional	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.82
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.82
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.82
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.81
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.8
PRK00089	292	era GTPase Era; Reviewed	99.8
PRK00093	435	GTP-binding protein Der; Reviewed	99.79
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.79
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.79
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.78
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.78
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.78
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.77
CHL00189	742	infB translation initiation factor 2; Provisional	99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.76
PRK05306	787	infB translation initiation factor IF-2; Validated	99.76
COG0536	369	Obg Predicted GTPase [General function prediction	99.76
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.75
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.75
COG1159	298	Era GTPase [General function prediction only]	99.75
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.75
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.74
PRK05433	600	GTP-binding protein LepA; Provisional	99.74
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.74
COG1160	444	Predicted GTPases [General function prediction onl	99.73
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.72
PRK12317	425	elongation factor 1-alpha; Reviewed	99.72
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.71
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.71
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.71
COG0486	454	ThdF Predicted GTPase [General function prediction	99.71
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.7
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.7
PRK10218	607	GTP-binding protein; Provisional	99.69
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.69
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.69
COG2229	187	Predicted GTPase [General function prediction only	99.67
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.67
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.67
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.67
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.66
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.66
PRK04004	586	translation initiation factor IF-2; Validated	99.66
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.65
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.64
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.61
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.61
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.6
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.59
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.58
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.57
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.57
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.56
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.56
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.56
PRK12735	396	elongation factor Tu; Reviewed	99.54
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.53
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.52
PRK12736	394	elongation factor Tu; Reviewed	99.52
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.51
COG0218	200	Predicted GTPase [General function prediction only	99.5
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.5
COG1163	365	DRG Predicted GTPase [General function prediction	99.49
PRK09602	396	translation-associated GTPase; Reviewed	99.49
COG2262	411	HflX GTPases [General function prediction only]	99.49
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.47
PRK13351	687	elongation factor G; Reviewed	99.47
COG1084	346	Predicted GTPase [General function prediction only	99.46
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.44
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.44
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.44
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.43
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.43
CHL00071	409	tufA elongation factor Tu	99.42
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.41
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.41
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.4
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.4
PLN03126	478	Elongation factor Tu; Provisional	99.4
PLN00043	447	elongation factor 1-alpha; Provisional	99.4
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.39
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.38
PRK00049	396	elongation factor Tu; Reviewed	99.38
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.36
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.36
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.33
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.33
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.32
PLN03127	447	Elongation factor Tu; Provisional	99.31
PTZ00141	446	elongation factor 1- alpha; Provisional	99.3
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.3
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.28
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.25
PRK13768	253	GTPase; Provisional	99.23
PRK14845	1049	translation initiation factor IF-2; Provisional	99.23
KOG0090	238	consensus Signal recognition particle receptor, be	99.23
COG3596	296	Predicted GTPase [General function prediction only	99.21
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.21
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.21
PRK12740	668	elongation factor G; Reviewed	99.2
PRK12739	691	elongation factor G; Reviewed	99.19
PRK09866	741	hypothetical protein; Provisional	99.17
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.16
PTZ00258	390	GTP-binding protein; Provisional	99.16
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.15
PRK09601	364	GTP-binding protein YchF; Reviewed	99.15
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.15
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.14
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.13
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.13
KOG1145	683	consensus Mitochondrial translation initiation fac	99.13
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.12
PRK00007	693	elongation factor G; Reviewed	99.11
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.1
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.05
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.02
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.0
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.97
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.94
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.93
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.91
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.9
PRK07560	731	elongation factor EF-2; Reviewed	98.88
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.88
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.86
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.83
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.8
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.79
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.77
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.77
PTZ00416	836	elongation factor 2; Provisional	98.76
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.76
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.75
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.75
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.74
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.72
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.72
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.72
PRK00098	298	GTPase RsgA; Reviewed	98.68
PRK12289	352	GTPase RsgA; Reviewed	98.68
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.66
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.63
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.62
PRK12288	347	GTPase RsgA; Reviewed	98.62
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.6
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.57
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.56
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.54
KOG0410	410	consensus Predicted GTP binding protein [General f	98.5
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.49
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.48
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.45
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.44
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.4
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.39
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.39
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.38
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.34
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.32
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.3
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.29
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.28
PRK13796	365	GTPase YqeH; Provisional	98.26
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.23
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.2
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.2
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.19
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.15
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.13
KOG2486	320	consensus Predicted GTPase [General function predi	98.13
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.1
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.1
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.07
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.04
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.04
COG1161	322	Predicted GTPases [General function prediction onl	98.02
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.01
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	97.98
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.98
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.98
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.97
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.96
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.93
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.91
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.9
KOG1143	591	consensus Predicted translation elongation factor	97.82
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.76
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	97.75
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.74
PRK12288	347	GTPase RsgA; Reviewed	97.72
PRK12289	352	GTPase RsgA; Reviewed	97.7
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.68
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.68
KOG0467	887	consensus Translation elongation factor 2/ribosome	97.67
PRK01889	356	GTPase RsgA; Reviewed	97.64
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.64
cd03110	179	Fer4_NifH_child This protein family's function is	97.57
PRK10416	318	signal recognition particle-docking protein FtsY;	97.57
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.56
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.55
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.52
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.52
PRK13796	365	GTPase YqeH; Provisional	97.48
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.48
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.47
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.47
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.46
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.43
KOG0460	449	consensus Mitochondrial translation elongation fac	97.42
COG1162	301	Predicted GTPases [General function prediction onl	97.4
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.38
PRK14974	336	cell division protein FtsY; Provisional	97.38
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.36
cd03112	158	CobW_like The function of this protein family is u	97.35
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.3
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.28
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.28
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.27
PRK00098	298	GTPase RsgA; Reviewed	97.27
COG1162	301	Predicted GTPases [General function prediction onl	97.25
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.21
PRK13695	174	putative NTPase; Provisional	97.21
KOG0099	379	consensus G protein subunit Galphas, small G prote	97.16
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.16
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.14
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.14
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.13
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.08
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.03
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.02
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.99
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.95
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.9
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.89
cd03111	106	CpaE_like This protein family consists of proteins	96.89
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	96.87
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	96.82
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	96.79
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.77
cd03114	148	ArgK-like The function of this protein family is u	96.74
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	96.73
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.7
TIGR00959	428	ffh signal recognition particle protein. This mode	96.69
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	96.68
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	96.68
KOG0464	753	consensus Elongation factor G [Translation, riboso	96.62
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.58
cd02036	179	MinD Bacterial cell division requires the formatio	96.58
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.57
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.51
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	96.5
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.45
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.39
PRK08118	167	topology modulation protein; Reviewed	96.38
PRK10867	433	signal recognition particle protein; Provisional	96.37
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.36
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	96.32
PRK11537	318	putative GTP-binding protein YjiA; Provisional	96.32
cd02117	212	NifH_like This family contains the NifH (iron prot	96.3
COG3523	1188	IcmF Type VI protein secretion system component Va	96.29
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.29
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	96.25
PRK07261	171	topology modulation protein; Provisional	96.21
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.14
COG4598	256	HisP ABC-type histidine transport system, ATPase c	96.14
KOG2484	435	consensus GTPase [General function prediction only	96.12
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.12
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.09
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.04
COG0523	323	Putative GTPases (G3E family) [General function pr	95.91
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	95.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.88
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.8
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.78
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.77
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	95.76
smart00382	148	AAA ATPases associated with a variety of cellular	95.73
PF00004	132	AAA: ATPase family associated with various cellula	95.68
PRK06217	183	hypothetical protein; Validated	95.59
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.54
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.49
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	95.49
PRK14738	206	gmk guanylate kinase; Provisional	95.45
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	95.44
PRK14737	186	gmk guanylate kinase; Provisional	95.41
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.41
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.37
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.36
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.35
PRK03839	180	putative kinase; Provisional	95.32
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.28
PRK01889	356	GTPase RsgA; Reviewed	95.28
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	95.26
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.21
PRK14530	215	adenylate kinase; Provisional	95.17
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.17
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.14
COG4525	259	TauB ABC-type taurine transport system, ATPase com	95.13
PRK13949	169	shikimate kinase; Provisional	95.11
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.08
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.07
PRK14532	188	adenylate kinase; Provisional	95.06
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	95.05
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.04
KOG2423	572	consensus Nucleolar GTPase [General function predi	95.04
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	95.03
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.02
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	94.97
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.96
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.94
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	94.94
PF05729	166	NACHT: NACHT domain	94.93
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.88
PRK02496	184	adk adenylate kinase; Provisional	94.86
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	94.86
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.86
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.85
COG3638	258	ABC-type phosphate/phosphonate transport system, A	94.85
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.84
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	94.84
COG1161	322	Predicted GTPases [General function prediction onl	94.84
PF13173	128	AAA_14: AAA domain	94.83
PRK08233	182	hypothetical protein; Provisional	94.82
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	94.82
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.81
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	94.81
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.8

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-42  Score=279.79  Aligned_cols=167  Identities=23%  Similarity=0.436  Sum_probs=153.6

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      -.+.+||+|+|+.|||||||+.||.++.|. .+..|+|+|+..+++.++|+.+.++||||+|||+|+++..+||++|+++
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi   85 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   85 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence            356899999999999999999999999999 5666999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINV  253 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~~~~v  253 (284)
                      |+|||+|+.+||+++..|+++++++....++ +|||||+||    . +...+..++++.|+..++++ |+||||+++.||
T Consensus        86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl----~-~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV  160 (205)
T KOG0084|consen   86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDL----T-EKRVVSTEEAQEFADELGIPIFLETSAKDSTNV  160 (205)
T ss_pred             EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeecccc----H-hheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence            9999999999999999999999999887755 899999996    2 22344588999999999999 999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023316          254 NKIFKFIMAKLFNLP  268 (284)
Q Consensus       254 ~~lf~~l~~~i~~~~  268 (284)
                      +++|..++..+....
T Consensus       161 e~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  161 EDAFLTLAKELKQRK  175 (205)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-41  Score=270.14  Aligned_cols=167  Identities=29%  Similarity=0.455  Sum_probs=153.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|+.+||||||+.||+.++|.. ..+|+|..|..+++.+++..++|+||||+|||+|+++.++||++|+++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            47999999999999999999999999995 57799999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||+++.+||..++.|+++|++..+....| |||||+||.     +.+.+..+++..+|++.|+.|+|+||+++.||+++
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~-----~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i  158 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL-----ERREVEFEEAQAYAESQGLLFFETSAKTGENVNEI  158 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh-----hcccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence            999999999999999999999988765665 999999972     23445589999999999999999999999999999


Q ss_pred             HHHHHHHHhCCccc
Q 023316          257 FKFIMAKLFNLPWT  270 (284)
Q Consensus       257 f~~l~~~i~~~~~~  270 (284)
                      |..|.+.+.....+
T Consensus       159 f~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  159 FQAIAEKLPCSDPQ  172 (200)
T ss_pred             HHHHHHhccCcccc
Confidence            99999999877544

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-40  Score=270.41  Aligned_cols=170  Identities=22%  Similarity=0.393  Sum_probs=155.9

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (284)
Q Consensus        96 ~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~  174 (284)
                      .....+||+++|+++||||+|+.+|..+.|. ....|+|+||..+++.++|..+.+++|||+|||+|+.+...||+.|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            3456899999999999999999999999999 556699999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       175 iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                      +++|||+++..||+++..|+..+.++.+..++ +|||||+|+.     +.+.+..+.++++|.++|++|+|+||++|.||
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~-----~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI  162 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE-----EKRQVSKERGEALAREYGIKFFETSAKTNFNI  162 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc-----ccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence            99999999999999999999999999887777 7999999962     23445589999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCccc
Q 023316          254 NKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       254 ~~lf~~l~~~i~~~~~~  270 (284)
                      +++|..+++.+.++...
T Consensus       163 ~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  163 EEAFLSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHHHHHhhcch
Confidence            99999999999865433

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=100.00  E-value=3.4e-40  Score=255.30  Aligned_cols=192  Identities=61%  Similarity=1.020  Sum_probs=184.8

Q ss_pred             CCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccC
Q 023316           93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD  171 (284)
Q Consensus        93 ~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~  171 (284)
                      .+.++...+||.++||+.+|||||+-+|+++++. ....+.|+++..+++.+.|..+.+.+||.+|++++..+.+..+++
T Consensus        13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d   92 (205)
T KOG1673|consen   13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD   92 (205)
T ss_pred             cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence            3446788999999999999999999999999997 555699999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023316          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  251 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~  251 (284)
                      +.+++++||.+.+++++++..||.+.+..+..++||+||+|.|++-++|.+.|+.+..+++.+|+.++++.+++|+..+.
T Consensus        93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI  172 (205)
T KOG1673|consen   93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI  172 (205)
T ss_pred             cEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCccccccccCCCCCCCCC
Q 023316          252 NVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF  284 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~  284 (284)
                      ||.++|+.+...+++.+|+++++++.|+||+||
T Consensus       173 Nv~KIFK~vlAklFnL~~ti~~~~~iGdPildy  205 (205)
T KOG1673|consen  173 NVQKIFKIVLAKLFNLPWTIPEILTIGDPILDY  205 (205)
T ss_pred             cHHHHHHHHHHHHhCCceecccccccCcccccC
Confidence            999999999999999999999999999999997

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-39  Score=260.55  Aligned_cols=166  Identities=23%  Similarity=0.457  Sum_probs=150.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|+.+||||||++||+.+.|...| +|+|+||..+++.+.|..+.|++|||+|||+|+.+.+.|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            44599999999999999999999999999554 59999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCC-ce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~-~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++|..||++..+|++.++..+... +. +|||||.||    .++ +.+..++++..|+++++.|+++||+.|.||+
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL----~dk-rqvs~eEg~~kAkel~a~f~etsak~g~NVk  174 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL----SDK-RQVSIEEGERKAKELNAEFIETSAKAGENVK  174 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc----cch-hhhhHHHHHHHHHHhCcEEEEecccCCCCHH
Confidence            9999999999999999999999887653 55 599999996    333 3345788889999999999999999999999


Q ss_pred             HHHHHHHHHHhCCc
Q 023316          255 KIFKFIMAKLFNLP  268 (284)
Q Consensus       255 ~lf~~l~~~i~~~~  268 (284)
                      ++|..|...+....
T Consensus       175 ~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  175 QLFRRIAAALPGME  188 (221)
T ss_pred             HHHHHHHHhccCcc
Confidence            99999888887664

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=252.57  Aligned_cols=176  Identities=25%  Similarity=0.436  Sum_probs=156.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||++||+.|||||||+.+|+.+.|....+ |+|+||..+.+.++|.++++.||||+|||+|+.+.+.||++|.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            457999999999999999999999999996666 7999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCC--ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTA--IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~--~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++.+++|..+..|++++..|+.+.  +.++||||+|.     +..+.+..+++..||+++++.|+|+||++.+||.
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk-----es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~  163 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK-----ESERVVDREEGLKFARKHRCLFIECSAKTRENVQ  163 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc-----hhcccccHHHHHHHHHhhCcEEEEcchhhhccHH
Confidence            9999999999999999999999996543  33699999993     2234455899999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcccccc-ccCCC
Q 023316          255 KIFKFIMAKLFNLPWTVKR-NLTIG  278 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~~~~~-~~~~~  278 (284)
                      ..|+.++..|++.|.--+. |...+
T Consensus       164 ~~FeelveKIi~tp~l~~~~n~~~~  188 (209)
T KOG0080|consen  164 CCFEELVEKIIETPSLWEEGNSSAG  188 (209)
T ss_pred             HHHHHHHHHHhcCcchhhccCCccc
Confidence            9999999999998855443 44333

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-40  Score=260.66  Aligned_cols=166  Identities=20%  Similarity=0.373  Sum_probs=152.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+|++++|+.|||||+|+.+|+.+.|...+ .|+|+++..+.+.++++.+++++|||+|||.|+++.+.||+++.++|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            35799999999999999999999999999444 59999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||+++++||..+..|+..++++. ++..++|+|||+||     +.++.+..+++++||+++|..|+|+||++++||+|
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL-----~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEE  158 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL-----EARREVSKEEGEAFAREHGLIFMETSAKTAENVEE  158 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh-----hccccccHHHHHHHHHHcCceeehhhhhhhhhHHH
Confidence            9999999999999999999999996 44455799999997     33445569999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023316          256 IFKFIMAKLFNLP  268 (284)
Q Consensus       256 lf~~l~~~i~~~~  268 (284)
                      +|......|+.+.
T Consensus       159 aF~nta~~Iy~~~  171 (216)
T KOG0098|consen  159 AFINTAKEIYRKI  171 (216)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998664

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=5.5e-39  Score=255.52  Aligned_cols=168  Identities=21%  Similarity=0.364  Sum_probs=151.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|++++|. .+..|+|.+|..+.+.+++..+.++||||+|||+|.++.-.||+++|++++
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl   87 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL   87 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence            4699999999999999999999999999 555699999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC----CCce-EEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ----TAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK-ATLFFSSATHN  250 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~-Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~-~~~~~~Sa~~~  250 (284)
                      |||++++.||+++..|.+++..+..    ..-| ||+|||+|+    +... +.+..+.++.||+..| ++|||+|||..
T Consensus        88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~----~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~  163 (210)
T KOG0394|consen   88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV----DGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA  163 (210)
T ss_pred             EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC----CCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence            9999999999999999999987743    4455 899999994    4433 4455899999999885 79999999999


Q ss_pred             cCHHHHHHHHHHHHhCCccc
Q 023316          251 INVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~~~~~  270 (284)
                      .||.++|..+++.++..+..
T Consensus       164 ~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  164 TNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             ccHHHHHHHHHHHHHhccch
Confidence            99999999999999887753

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.8e-40  Score=252.03  Aligned_cols=164  Identities=25%  Similarity=0.485  Sum_probs=152.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+|.+++|++|||||||+.+|..+.|. ++..|+|.|+..+++.++|..+.++||||+|+|+|+.+...||+..+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            578899999999999999999999999 5555999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ||+++.+||.++.+|+++++.+++.-+-||||||.|+     ++++.+..++++.||..+|+.+||+||+.++|++.+|.
T Consensus        88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~-----~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDD-----PERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH  162 (198)
T ss_pred             EECcchhhhHhHHHHHHHHHhcCccccceecccCCCC-----ccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence            9999999999999999999999886666999999995     34455569999999999999999999999999999999


Q ss_pred             HHHHHHhCCc
Q 023316          259 FIMAKLFNLP  268 (284)
Q Consensus       259 ~l~~~i~~~~  268 (284)
                      .|.+..++..
T Consensus       163 cit~qvl~~k  172 (198)
T KOG0079|consen  163 CITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHH
Confidence            9999887665

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.2e-37  Score=258.60  Aligned_cols=181  Identities=58%  Similarity=0.967  Sum_probs=162.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|+.|||||||+++|++++|. .+.+|+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998 56679999998889999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  259 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~  259 (284)
                      |+++++||+++..|++.+.+.....+||+||||+||....+...++...++++.+++.++++++++||++|.||+++|++
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~  160 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI  160 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988766667789999999854333333334467788899999999999999999999999999


Q ss_pred             HHHHHhCCccccccccCCCCCC
Q 023316          260 IMAKLFNLPWTVKRNLTIGEPI  281 (284)
Q Consensus       260 l~~~i~~~~~~~~~~~~~~~~~  281 (284)
                      +++.+++.+-....-...||||
T Consensus       161 l~~~l~~~~~~~~~~~~~~~~~  182 (182)
T cd04128         161 VLAKAFDLPLTIPEILTVGEPI  182 (182)
T ss_pred             HHHHHHhcCCChhhhcCCCCCC
Confidence            9999999998888889999986

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-38  Score=254.69  Aligned_cols=169  Identities=25%  Similarity=0.433  Sum_probs=156.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      -...+||+++|+++||||-|+.||..++|. +..+|+|+++..+++.++++.+..+||||+|||+|+.+...||++|.++
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA   90 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   90 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence            356899999999999999999999999999 8888999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      ++|||++.+.||+++..|+.+|+.+....++ +|||||+||.     ..+.+..++++.+|+..+..|+|+||.++.||+
T Consensus        91 llVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~-----~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe  165 (222)
T KOG0087|consen   91 LLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN-----HLRAVPTEDGKAFAEKEGLFFLETSALDATNVE  165 (222)
T ss_pred             EEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh-----hccccchhhhHhHHHhcCceEEEecccccccHH
Confidence            9999999999999999999999999876666 6999999972     234455899999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCccc
Q 023316          255 KIFKFIMAKLFNLPWT  270 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~~  270 (284)
                      ++|..++..|++...+
T Consensus       166 ~aF~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  166 KAFERVLTEIYKIVSK  181 (222)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999876543

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-37  Score=236.50  Aligned_cols=164  Identities=25%  Similarity=0.478  Sum_probs=150.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      .-.|+.++|+..||||||+.++.++.|. ..+.|.|++|..+++.-..+++.+++|||+|||+|+.+...||++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            3569999999999999999999999999 777899999999999888899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccc-hHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWT-IATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||++|.+||..++.|.-.|+.++-...+ |+||||||+      +.+++ ..+.++.+++++|..|||+||+.|.||++
T Consensus       100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm------d~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~  173 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM------DSERVISHERGRQLADQLGFEFFETSAKENINVKQ  173 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC------ccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence            99999999999999999999998765555 799999996      33444 48999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023316          256 IFKFIMAKLFNLP  268 (284)
Q Consensus       256 lf~~l~~~i~~~~  268 (284)
                      +|+.++..|.++.
T Consensus       174 ~Fe~lv~~Ic~km  186 (193)
T KOG0093|consen  174 VFERLVDIICDKM  186 (193)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.1e-36  Score=249.99  Aligned_cols=165  Identities=23%  Similarity=0.385  Sum_probs=147.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|+.|||||||+.+|..+.+... .++.+.++..+.+.+++..+.+++|||+|+++|..+++.|++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            469999999999999999999999988844 4588899988889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |||+++++||+++..|++++.++.+..|+||||||+||.    .. ..+..++++.+++.++++|+||||++|.||+++|
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~----~~-~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA----FK-RQVATEQAQAYAERNGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch----hc-cCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            999999999999999999998887766668999999962    22 2344778999999999999999999999999999


Q ss_pred             HHHHHHHhCCc
Q 023316          258 KFIMAKLFNLP  268 (284)
Q Consensus       258 ~~l~~~i~~~~  268 (284)
                      +++++.+....
T Consensus       160 ~~l~~~i~~~~  170 (189)
T cd04121         160 TELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHHhc
Confidence            99999887543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.9e-37  Score=240.95  Aligned_cols=168  Identities=21%  Similarity=0.393  Sum_probs=151.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ...+++++|||.-||||||+..|..++|. -..||.|+||..+.+.+ +|..+++++|||+|||+|+++.+.||+++.++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35789999999999999999999999998 56789999999998877 68999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC--CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  252 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~  252 (284)
                      ++|||++|++||+.+..|+.+...+.  +..++ .|||+|+||    . ..+.+..++++.+|+.+|+.|+||||++|.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL----~-SqRqVt~EEaEklAa~hgM~FVETSak~g~N  160 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDL----Q-SQRQVTAEEAEKLAASHGMAFVETSAKNGCN  160 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccch----h-hhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence            99999999999999999999987774  45555 599999997    2 2234459999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCccc
Q 023316          253 VNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       253 v~~lf~~l~~~i~~~~~~  270 (284)
                      |++.|..+++.+++...+
T Consensus       161 VeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  161 VEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999877554

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.1e-35  Score=250.42  Aligned_cols=169  Identities=23%  Similarity=0.427  Sum_probs=145.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +.|+++|+.|||||||+++|..+.|.. ..+|+|.++..+.+.+++..+.+++|||+|+++|..++..||+++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            469999999999999999999999984 4568899999899999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIF  257 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |+++++||+++..|++.+.+.....+| ||||||+||.    . ...+..+++.++++++ ++.|++|||++|.||+++|
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~----~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F  155 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE----T-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  155 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc----c-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence            999999999999999999877654455 7999999962    2 2334467788899885 7899999999999999999


Q ss_pred             HHHHHHHhCC-ccccccc
Q 023316          258 KFIMAKLFNL-PWTVKRN  274 (284)
Q Consensus       258 ~~l~~~i~~~-~~~~~~~  274 (284)
                      ++++..+.+. +..+..|
T Consensus       156 ~~l~~~~~~~~~~~~~~~  173 (202)
T cd04120         156 LKLVDDILKKMPLDILRN  173 (202)
T ss_pred             HHHHHHHHHhCccccccc
Confidence            9999988654 3344333

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-36  Score=235.27  Aligned_cols=171  Identities=22%  Similarity=0.329  Sum_probs=154.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+|++++|+.|.|||+|+++|+.++|.+ ...|+|++|.++.+.+.++.++++||||+|||+|++..+.||++|.+.+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            346899999999999999999999999994 4459999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||+++++||+++..|+..++...+..+. |++|||.||    . ..+.+...++..||+++.+.+.|+||++|+||+|
T Consensus        87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL----~-~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL----D-PEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc----C-hhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            999999999999999999999998877766 699999996    2 2244558899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcccccc
Q 023316          256 IFKFIMAKLFNLPWTVKR  273 (284)
Q Consensus       256 lf~~l~~~i~~~~~~~~~  273 (284)
                      .|...++.|+++...-|.
T Consensus       162 aFl~c~~tIl~kIE~GEl  179 (214)
T KOG0086|consen  162 AFLKCARTILNKIESGEL  179 (214)
T ss_pred             HHHHHHHHHHHHHhhcCC
Confidence            999999999877554443

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-36  Score=234.29  Aligned_cols=165  Identities=23%  Similarity=0.413  Sum_probs=150.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|..|||||+|+++|..+-|. ..-.|+|++|+.+++.++|.++++++|||+|||+|+++...||+.++++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            4689999999999999999999999998 666799999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++...||+-+.+|+.+|.++..+.+. |+||||+|+     .+++.+..+.+++|++....-|.|+||+.-+||+.+
T Consensus        86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~-----~drrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL-----ADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch-----hhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            99999999999999999999999887777 999999996     233444578889999987778889999999999999


Q ss_pred             HHHHHHHHhCCc
Q 023316          257 FKFIMAKLFNLP  268 (284)
Q Consensus       257 f~~l~~~i~~~~  268 (284)
                      |..++..+....
T Consensus       161 f~~~a~rli~~a  172 (213)
T KOG0095|consen  161 FLDLACRLISEA  172 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            999998776544

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.2e-35  Score=242.56  Aligned_cols=166  Identities=22%  Similarity=0.366  Sum_probs=143.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|+++||||||+.+|+.++|. ...+|++.++ .+.+.+++..+.+++|||+|+++|..++..++++++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            69999999999999999999999998 5556777665 456778999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC-----CCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316          180 DLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP-----PDLQWTIATQARAYAKAMKA-TLFFSSATHNIN  252 (284)
Q Consensus       180 d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~  252 (284)
                      |+++++||+++ ..|+.++.+..++.|.||||||+||.++..     ...+.+..+++..+++.+++ .|+||||++|.|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  160 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN  160 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence            99999999998 689999988776655589999999732210     01123458889999999998 599999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 023316          253 VNKIFKFIMAKLFNL  267 (284)
Q Consensus       253 v~~lf~~l~~~i~~~  267 (284)
                      |+++|+.+++.+.+.
T Consensus       161 V~~~F~~~~~~~~~~  175 (176)
T cd04133         161 VKAVFDAAIKVVLQP  175 (176)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999987654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.8e-35  Score=244.20  Aligned_cols=168  Identities=27%  Similarity=0.341  Sum_probs=144.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+.+.|.. ..||++.++ .+.+.+++..+.+++|||+|+++|..+++.+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            347899999999999999999999999984 456777665 467888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CCcc-cchHHHHHHHHHHcCC-cEEEEcC
Q 023316          177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PDLQ-WTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~~~-~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      +|||+++++||+++ ..|++++++..+..|.||||||+||.++..      ..++ .+..++++++|+++++ +|+||||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999997 799999998877666689999999743211      0122 3458899999999996 8999999


Q ss_pred             CCCcC-HHHHHHHHHHHHhC
Q 023316          248 THNIN-VNKIFKFIMAKLFN  266 (284)
Q Consensus       248 ~~~~~-v~~lf~~l~~~i~~  266 (284)
                      ++|.| |+++|..+++.+++
T Consensus       162 k~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         162 LQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99998 99999999997654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.6e-36  Score=233.05  Aligned_cols=171  Identities=27%  Similarity=0.467  Sum_probs=154.0

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+++|..-||||||+.+|+.++|. ...+|+...|..+.+.+.+....+.||||+|||+|..+.+.||++++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            345799999999999999999999999999 6667888899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      |+|||++|++||+.++.|..++++...+.+- ++||||+||     ++.+.+..++++.+|+..|+.|+++||+.|.||.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL-----EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL-----EEERQVTRQEAEAYAESVGALYMETSAKDNVGIS  164 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH-----HHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence            9999999999999999999999998776666 699999997     3334455899999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCccccc
Q 023316          255 KIFKFIMAKLFNLPWTVK  272 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~~~~  272 (284)
                      |+|..+....++.-.+.+
T Consensus       165 elFe~Lt~~MiE~~s~~q  182 (218)
T KOG0088|consen  165 ELFESLTAKMIEHSSQRQ  182 (218)
T ss_pred             HHHHHHHHHHHHHhhhcc
Confidence            999999988776554433

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.4e-34  Score=239.30  Aligned_cols=165  Identities=25%  Similarity=0.335  Sum_probs=142.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|+++.|. ...+|++.++ .+.+.+++..+.+++|||+|+++|..+.+.+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            379999999999999999999999998 4456777665 46788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CCcc-cchHHHHHHHHHHcCC-cEEEEcCCC
Q 023316          179 FDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PDLQ-WTIATQARAYAKAMKA-TLFFSSATH  249 (284)
Q Consensus       179 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~~~-~~~~~~~~~~a~~~~~-~~~~~Sa~~  249 (284)
                      ||+++++||+++ ..|++.++++.+..|.||||||+||.++..      ..++ .+..+++.++|+++++ +|+||||++
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            999999999996 799999998887766689999999743211      0112 2447899999999997 799999999


Q ss_pred             CcC-HHHHHHHHHHHHh
Q 023316          250 NIN-VNKIFKFIMAKLF  265 (284)
Q Consensus       250 ~~~-v~~lf~~l~~~i~  265 (284)
                      |+| |+++|..+++..+
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=5.3e-34  Score=244.30  Aligned_cols=169  Identities=24%  Similarity=0.296  Sum_probs=145.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.|. .+.+|++.++. ..+.+++..+.++||||+|+++|..+.+.||+++|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            45799999999999999999999999998 55568887764 56788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CC-cccchHHHHHHHHHHcCC-cEEEEcC
Q 023316          177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PD-LQWTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~-~~~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      +|||+++++||+++ ..|++++.+..+..|+||||||+||..+..      .. ...+..++++++|+++++ .|+||||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            99999999999985 799999998876666689999999743211      11 123447899999999999 6999999


Q ss_pred             CCCc-CHHHHHHHHHHHHhCC
Q 023316          248 THNI-NVNKIFKFIMAKLFNL  267 (284)
Q Consensus       248 ~~~~-~v~~lf~~l~~~i~~~  267 (284)
                      ++|. ||+++|..++..+++.
T Consensus       170 ktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHHh
Confidence            9998 8999999999988754

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=7.4e-34  Score=237.58  Aligned_cols=167  Identities=20%  Similarity=0.280  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|+.|||||||+++|+.+.|. ...+|++.++ .+.+.+++..+.+++|||+|+++|+.+++.|++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            589999999999999999999999997 5556777655 45567899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcC-CcEEEEcCCC
Q 023316          179 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMK-ATLFFSSATH  249 (284)
Q Consensus       179 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~  249 (284)
                      ||+++++||+++. .|+..+.+..++.|.||||||.||.+....       ....+..++++.+++.++ ++|+|+||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            9999999999997 699988877666555899999997432110       001234678999999998 5999999999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023316          250 NINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~  267 (284)
                      |.||+++|+++++.+...
T Consensus       162 g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCHHHHHHHHHHHHhcc
Confidence            999999999999988765

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.5e-33  Score=230.02  Aligned_cols=162  Identities=23%  Similarity=0.393  Sum_probs=142.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|.++++...+ +|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            479999999999999999999999988444 4889998888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCC-ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~-~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||+++++||+.+..|++.+....... |.++||||+|+.    .. .....+++.++++..+++++++||++|.|++++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f  156 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE----AQ-RDVTYEEAKQFADENGLLFLECSAKTGENVEDAF  156 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-cCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999987765444 447999999962    22 2234678889999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023316          258 KFIMAKLFN  266 (284)
Q Consensus       258 ~~l~~~i~~  266 (284)
                      .+++..+++
T Consensus       157 ~~l~~~~~~  165 (166)
T cd04122         157 LETAKKIYQ  165 (166)
T ss_pred             HHHHHHHhh
Confidence            999988864

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.6e-36  Score=225.46  Aligned_cols=163  Identities=23%  Similarity=0.414  Sum_probs=147.4

Q ss_pred             EEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          104 SLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       104 ~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      +++|++++|||+|+-+|..+-|-  .-++|.|+||..+.+..++.++++++|||+|||+|++....||+++|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37999999999999999998888  4456999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHH
Q 023316          182 TSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI  260 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l  260 (284)
                      +++-||++++.|+.+|.++....+. .++|||+|+    . ..+.+..++++.+++.+++||+|+||++|-||+-.|..+
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~----a-~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i  155 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDL----A-HERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI  155 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhcccccc----c-hhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence            9999999999999999999887777 599999996    1 113344788999999999999999999999999999999


Q ss_pred             HHHHhCCcccc
Q 023316          261 MAKLFNLPWTV  271 (284)
Q Consensus       261 ~~~i~~~~~~~  271 (284)
                      +..+.+.....
T Consensus       156 a~~l~k~~~~~  166 (192)
T KOG0083|consen  156 AEELKKLKMGA  166 (192)
T ss_pred             HHHHHHhccCC
Confidence            99987765443

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.6e-33  Score=238.81  Aligned_cols=168  Identities=23%  Similarity=0.342  Sum_probs=143.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+|+|++|||||||+++|..+.|. .+.||++.++. ..+.+++..+.+.+|||+|++.|..+++.+|+++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999998 55567776664 6778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCCC------Ccc-cchHHHHHHHHHHcCC-cEEEEcCCC
Q 023316          179 FDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPP------DLQ-WTIATQARAYAKAMKA-TLFFSSATH  249 (284)
Q Consensus       179 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~------~~~-~~~~~~~~~~a~~~~~-~~~~~Sa~~  249 (284)
                      ||+++++||+++ ..|..++....+..|.||||||+||..+...      ... .+..+++..+++++|+ +|+||||++
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999999 5788888777777777899999998543211      111 2347889999999996 899999999


Q ss_pred             CcC-HHHHHHHHHHHHhCCc
Q 023316          250 NIN-VNKIFKFIMAKLFNLP  268 (284)
Q Consensus       250 ~~~-v~~lf~~l~~~i~~~~  268 (284)
                      +.| |+++|..++...++..
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            985 9999999999887643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.4e-33  Score=227.11  Aligned_cols=158  Identities=25%  Similarity=0.459  Sum_probs=141.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|+++++. ...+|.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998 45678899988888999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |+++++||+++..|++++........| ++||||.||.    + .+.+..+++..+++.++++|+++||++|.||+++|.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE----Q-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999887654455 7999999962    2 233346789999999999999999999999999999


Q ss_pred             HHHHH
Q 023316          259 FIMAK  263 (284)
Q Consensus       259 ~l~~~  263 (284)
                      +|++.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-34  Score=218.28  Aligned_cols=175  Identities=22%  Similarity=0.355  Sum_probs=156.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+|-+++|+-|||||+|+.+|...+|..+ ..|+|++|..+.+.+.|+++++++|||+|||+|+...+.||+++.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            468999999999999999999999999944 4499999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++.+.+++.+..|+...+... ++..++++|||.||     +..+.+..+++++|++++|..|.|+||++|+||++.
T Consensus        90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadl-----e~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-----ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh-----hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            999999999999999999887763 45555799999997     233445599999999999999999999999999999


Q ss_pred             HHHHHHHHhCCccccccccCCC
Q 023316          257 FKFIMAKLFNLPWTVKRNLTIG  278 (284)
Q Consensus       257 f~~l~~~i~~~~~~~~~~~~~~  278 (284)
                      |...++.|+++.+.-...++..
T Consensus       165 fle~akkiyqniqdgsldlnaa  186 (215)
T KOG0097|consen  165 FLETAKKIYQNIQDGSLDLNAA  186 (215)
T ss_pred             HHHHHHHHHHhhhcCcccccch
Confidence            9999999998876665555443

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=5.1e-33  Score=234.21  Aligned_cols=169  Identities=20%  Similarity=0.346  Sum_probs=145.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      +||+++|++|||||||+++|+++.+. ...+|++.++..+.+.++ +..+.+++|||+|+++|..+++.++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            59999999999999999999999988 556688999988888888 8899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcC
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNIN  252 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~~  252 (284)
                      ||+++++||+++..|+..+....     ...|.||||||+||.    + ......+++.++++..+ .+++++||++|.|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~  155 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK----K-RLAKDGEQMDQFCKENGFIGWFETSAKEGIN  155 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc----c-ccccCHHHHHHHHHHcCCceEEEEeCCCCCC
Confidence            99999999999999999887642     233448999999962    1 12334678899999998 6899999999999


Q ss_pred             HHHHHHHHHHHHhCCccccccc
Q 023316          253 VNKIFKFIMAKLFNLPWTVKRN  274 (284)
Q Consensus       253 v~~lf~~l~~~i~~~~~~~~~~  274 (284)
                      |+++|+++++.+.+.......+
T Consensus       156 v~e~f~~l~~~l~~~~~~~~~~  177 (201)
T cd04107         156 IEEAMRFLVKNILANDKNLQQA  177 (201)
T ss_pred             HHHHHHHHHHHHHHhchhhHhh
Confidence            9999999999988765444333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=5.9e-33  Score=228.96  Aligned_cols=163  Identities=18%  Similarity=0.272  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|+.+.|. ...||++.++. ..+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999997 55567776664 55678899999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCC------CCC-cccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023316          180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRL------PPD-LQWTIATQARAYAKAMK-ATLFFSSATHN  250 (284)
Q Consensus       180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~------~~~-~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~  250 (284)
                      |+++++||+++. .|+.++....++.|.||||||+|+..+-      ... .+.+..+++++++++.+ +.|+++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            999999999997 6999998876665668999999973220      001 12344778899999887 68999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      .|++++|+.++...
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=3.9e-33  Score=229.36  Aligned_cols=163  Identities=13%  Similarity=0.200  Sum_probs=140.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|.+++|. ...+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            479999999999999999999999998 4455777554 45678899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||+++++||+.+..|+..+.+..  ...|.|+||||+|+.    .. +.+..+++..+++.++++|++|||++|.||+++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~----~~-~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~  155 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE----SQ-RQVTTEEGRNLAREFNCPFFETSAALRHYIDDA  155 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh----hc-CccCHHHHHHHHHHhCCEEEEEecCCCCCHHHH
Confidence            99999999999999988887653  234447999999962    22 234467888999999999999999999999999


Q ss_pred             HHHHHHHHhCCc
Q 023316          257 FKFIMAKLFNLP  268 (284)
Q Consensus       257 f~~l~~~i~~~~  268 (284)
                      |+++++.+.+..
T Consensus       156 f~~l~~~~~~~~  167 (172)
T cd04141         156 FHGLVREIRRKE  167 (172)
T ss_pred             HHHHHHHHHHhc
Confidence            999999887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=8e-33  Score=236.10  Aligned_cols=163  Identities=23%  Similarity=0.317  Sum_probs=143.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+.+++. ...+|+|.++....+..++..+.+.+|||+|+++|..++..|+++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            55799999999999999999999999998 55668999998888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      +|||+++++||+++..|+..+.+.....|++|||||+||.+      ..+..+++ .+++..+++|++|||++|.||+++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~------~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~  163 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN------RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP  163 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh------ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHH
Confidence            99999999999999999999988776666689999999621      11223344 677888999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |++++..+.+.
T Consensus       164 f~~l~~~~~~~  174 (219)
T PLN03071        164 FLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHcC
Confidence            99999998755

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.6e-32  Score=223.81  Aligned_cols=161  Identities=24%  Similarity=0.490  Sum_probs=141.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|.++++. ...+|+|.++....+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998 55668888888788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |++++++|+++..|++.+.+.....+| ++||||+||.    +. +....+++.++++.++++++++||++|.|++++|+
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  156 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME----DE-RVVSSERGRQLADQLGFEFFEASAKENINVKQVFE  156 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC----cc-cccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999999887654444 7999999962    21 22235677888888999999999999999999999


Q ss_pred             HHHHHHhC
Q 023316          259 FIMAKLFN  266 (284)
Q Consensus       259 ~l~~~i~~  266 (284)
                      +++..+.+
T Consensus       157 ~l~~~~~~  164 (165)
T cd01865         157 RLVDIICD  164 (165)
T ss_pred             HHHHHHHh
Confidence            99987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.6e-32  Score=224.30  Aligned_cols=163  Identities=21%  Similarity=0.415  Sum_probs=143.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.+++|. ...+|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            3689999999999999999999999988 556688988888888889988999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++++|+++..|+..+.+.....+| ++||||+|+.    +. .....+++..+++..+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  156 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME----EK-RVVSKEEGEALADEYGIKFLETSAKANINVEEA  156 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999887654445 8999999963    22 223356788889999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |+++++.+.+
T Consensus       157 ~~~i~~~~~~  166 (167)
T cd01867         157 FFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHh
Confidence            9999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.5e-32  Score=225.43  Aligned_cols=163  Identities=25%  Similarity=0.375  Sum_probs=142.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      ||+++|++|||||||+++|+++.|. .+.+|++.++..+.+.++|..+.+++|||+|+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            8999999999999999999999998 555788999988888899999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcc-cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ++++++|+.+..|++.+.+. .+..+| |+||||+||.    +... ....+++..+++.++++++++||++|.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS----SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC----ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999998665 344455 7999999962    2222 223667788888899999999999999999999


Q ss_pred             HHHHHHHhCCc
Q 023316          258 KFIMAKLFNLP  268 (284)
Q Consensus       258 ~~l~~~i~~~~  268 (284)
                      +.+++.+.+.+
T Consensus       158 ~~l~~~~~~~~  168 (170)
T cd04108         158 FRVAALTFELG  168 (170)
T ss_pred             HHHHHHHHHcc
Confidence            99999987654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.6e-32  Score=222.63  Aligned_cols=159  Identities=27%  Similarity=0.489  Sum_probs=144.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      ||+++|+++||||||+++|.++.+. ...+|.|.+...+.+.+++..+.+++||++|+++|..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999988 555688899999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  259 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~  259 (284)
                      +++++||+++..|++.+....+..+| +|||||.|+.    + .+.+..+++++++++++++|+++||+++.||.++|..
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~----~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS----D-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG----G-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeecccccc----c-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999885445 7999999962    2 2334478899999999999999999999999999999


Q ss_pred             HHHHHh
Q 023316          260 IMAKLF  265 (284)
Q Consensus       260 l~~~i~  265 (284)
                      +++.+.
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.9e-32  Score=226.18  Aligned_cols=163  Identities=26%  Similarity=0.434  Sum_probs=140.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC----------CeEEEEEEEeCCCCcCCcccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ----------GARIAFSIWDVGGDSRSFDHVPI  167 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~----------~~~~~l~l~Dt~G~e~~~~~~~~  167 (284)
                      ..+||+++|++|||||||+++|.++.+. ...+|++.++....+.+.          +..+.+++|||+|+++|..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            4689999999999999999999999998 556688988887777664          45789999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  245 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  245 (284)
                      +++++|++|+|||+++++||.++..|+..+....  ...|.++||||+|+.    +. .....+++.++++..+++++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE----DQ-RQVSEEQAKALADKYGIPYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch----hc-CccCHHHHHHHHHHcCCeEEEE
Confidence            9999999999999999999999999999998764  233447999999962    21 2233677899999999999999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhC
Q 023316          246 SATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      ||++|.|++++|+++++.+++
T Consensus       158 Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-34  Score=224.02  Aligned_cols=165  Identities=27%  Similarity=0.427  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC---------CeEEEEEEEeCCCCcCCccccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ---------GARIAFSIWDVGGDSRSFDHVPIA  168 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~---------~~~~~l~l~Dt~G~e~~~~~~~~~  168 (284)
                      ..+|.+.+|++||||||++.+|..++|. .-+.|+|+||..+.+.++         +..+.+++|||+|||+|+++...|
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            4679999999999999999999999999 666799999999988773         467999999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      +++|-+++++||+++..||-+++.|+.+++.+.  ++.-+|++|||+||     ++.+.+.++++.++|.++|+||||+|
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL-----~~~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL-----EDQRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch-----hhhhhhhHHHHHHHHHHhCCCeeeec
Confidence            999999999999999999999999999998763  33333799999997     23234448899999999999999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCc
Q 023316          247 ATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      |-+|.||++..+.+...+++..
T Consensus       163 A~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHHH
Confidence            9999999999888888877653

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.5e-32  Score=221.71  Aligned_cols=161  Identities=24%  Similarity=0.373  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++++.+.+. ...+|.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998887 55668888888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  259 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~  259 (284)
                      |+++++||+++..|+..+.....+.|.|+||||+|+.    .  + .+..+...+++..+++++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~----~--~-~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK----D--R-KVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc----c--c-cCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHH
Confidence            9999999999999999998887666668999999962    1  1 1223345677778899999999999999999999


Q ss_pred             HHHHHhCCc
Q 023316          260 IMAKLFNLP  268 (284)
Q Consensus       260 l~~~i~~~~  268 (284)
                      +++.+.+.+
T Consensus       154 l~~~~~~~~  162 (166)
T cd00877         154 LARKLLGNP  162 (166)
T ss_pred             HHHHHHhcc
Confidence            999987643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.9e-32  Score=221.48  Aligned_cols=162  Identities=20%  Similarity=0.420  Sum_probs=143.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||++++.++.+. ...+|.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            489999999999999999999999988 5556889899888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCC-CceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~-~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||+++++||+++..|+..+.+.... .|.|+|+||+|+.    .. .....+++..+++.++++++++||++|+|++++|
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  156 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----DK-RVVDYSEAQEFADELGIPFLETSAKNATNVEQAF  156 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc----cc-cCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence            9999999999999999999887643 4448999999962    22 2233677888999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023316          258 KFIMAKLFN  266 (284)
Q Consensus       258 ~~l~~~i~~  266 (284)
                      ..+++.+.+
T Consensus       157 ~~i~~~~~~  165 (166)
T cd01869         157 MTMAREIKK  165 (166)
T ss_pred             HHHHHHHHh
Confidence            999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.1e-32  Score=223.74  Aligned_cols=162  Identities=23%  Similarity=0.357  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+.+|+.+.|.. ..+|++ +.+...+.+++..+.+++|||+|+++|..+++.+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            799999999999999999999999984 445654 555567778999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316          180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSATHN  250 (284)
Q Consensus       180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~-~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~  250 (284)
                      |+++++||+++. .|+..+....++.|.||||||+||.+...      . ..+.+..+++.++++.++. +|+|+||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            999999999996 69998887766656689999999732110      0 0122447889999999985 9999999999


Q ss_pred             cCHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAK  263 (284)
Q Consensus       251 ~~v~~lf~~l~~~  263 (284)
                      +|++++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4.4e-32  Score=226.41  Aligned_cols=167  Identities=22%  Similarity=0.258  Sum_probs=138.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .||+++|++|||||||+++|.++.|.. ..+|.+.++. ..+.+++..+.+++|||+|++.|..+++.+++++|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            389999999999999999999999984 4456666654 56677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-------cccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023316          180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-------LQWTIATQARAYAKAMK-ATLFFSSATHN  250 (284)
Q Consensus       180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~  250 (284)
                      |+++++||+++. .|++.+.......|.||||||+||.......       .+.+..+++..+++..+ ++|+++||++|
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            999999999986 6999998876666668999999974321110       00123567788888877 68999999999


Q ss_pred             cCHHHHHHHHHHHHhCCc
Q 023316          251 INVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~~~  268 (284)
                      .||+++|.++++.+.+..
T Consensus       160 ~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         160 RGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999999887543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=3.2e-32  Score=231.78  Aligned_cols=163  Identities=26%  Similarity=0.402  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC-eEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      +||+++|++|||||||+++|.++.|. .+.+|++.+++.+.+.+++ ..+.+++|||+|++.+..++..|++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            59999999999999999999999998 5566999999888888865 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC---CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQ---TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      ||+++++||+++..|++.+.+...   ..+| |+||||+||.    + .+.+..+++..+++.++++++++||++|+||+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~----~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~  155 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE----H-NRTVKDDKHARFAQANGMESCLVSAKTGDRVN  155 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc----c-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence            999999999999999999988743   3345 6999999962    2 12334677889999999999999999999999


Q ss_pred             HHHHHHHHHHhCCc
Q 023316          255 KIFKFIMAKLFNLP  268 (284)
Q Consensus       255 ~lf~~l~~~i~~~~  268 (284)
                      ++|++++..+....
T Consensus       156 ~lf~~l~~~l~~~~  169 (215)
T cd04109         156 LLFQQLAAELLGVD  169 (215)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=7.1e-32  Score=219.31  Aligned_cols=159  Identities=26%  Similarity=0.452  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|+++++. ...++.+.++..+.+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988 44457787888778888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  259 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~  259 (284)
                      |++++.+|+++..|+..+.+..++.|.|+|+||+|+.    .    ...++...+++..+++++++||++|.|++++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~----~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD----P----SVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc----h----hHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998876666668999999961    1    1234456677788899999999999999999999


Q ss_pred             HHHHHhCC
Q 023316          260 IMAKLFNL  267 (284)
Q Consensus       260 l~~~i~~~  267 (284)
                      +++.+...
T Consensus       153 l~~~~~~~  160 (161)
T cd04124         153 AIKLAVSY  160 (161)
T ss_pred             HHHHHHhc
Confidence            99888654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=5.6e-32  Score=219.37  Aligned_cols=159  Identities=18%  Similarity=0.321  Sum_probs=135.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++++.+.+...+. |++ +...+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            3799999999999999999999999885444 555 56667788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||++++++|+++..|++.+.+...  +.|.|+|+||+|+.    +. +....+++..+++.++++++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  154 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE----DE-RVVSREEGQALARQWGCPFYETSAKSKINVDEV  154 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            999999999999999999987632  34447999999962    22 223356677888888899999999999999999


Q ss_pred             HHHHHHHH
Q 023316          257 FKFIMAKL  264 (284)
Q Consensus       257 f~~l~~~i  264 (284)
                      |+++++.+
T Consensus       155 ~~~l~~~~  162 (163)
T cd04136         155 FADLVRQI  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=5.2e-32  Score=220.13  Aligned_cols=160  Identities=19%  Similarity=0.363  Sum_probs=141.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|+++++. ...+|.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            59999999999999999999999988 55668899998888999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC-----CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQ-----TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~-----~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                      |++++++|+.+..|+.++.++..     ..+| ++|+||+|+.    + ......++...+++..+++++++||++|.|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT----K-HRAVSEDEGRLWAESKGFKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc----c-ccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            99999999999999999988753     2344 7999999962    1 1223367777888889999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023316          254 NKIFKFIMAKLF  265 (284)
Q Consensus       254 ~~lf~~l~~~i~  265 (284)
                      +++|+++++.++
T Consensus       156 ~~l~~~l~~~l~  167 (168)
T cd04119         156 NEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=7.2e-32  Score=226.94  Aligned_cols=163  Identities=23%  Similarity=0.448  Sum_probs=145.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|.+.++. ...+|++.++..+.+.+++..+.+.+|||+|++.+..++..++++++++|+|
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv   85 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   85 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence            689999999999999999999999988 5567889999888888899889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ||+++++||+++..|++.+.......|.+|||||+|+.    +. .....+++..+++.++++++++||++|.||+++|+
T Consensus        86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~  160 (199)
T cd04110          86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP----ER-KVVETEDAYKFAGQMGISLFETSAKENINVEEMFN  160 (199)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence            99999999999999999998877666668999999962    21 22336778888888999999999999999999999


Q ss_pred             HHHHHHhCC
Q 023316          259 FIMAKLFNL  267 (284)
Q Consensus       259 ~l~~~i~~~  267 (284)
                      +++..++..
T Consensus       161 ~l~~~~~~~  169 (199)
T cd04110         161 CITELVLRA  169 (199)
T ss_pred             HHHHHHHHh
Confidence            999988754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=5.5e-32  Score=227.47  Aligned_cols=155  Identities=23%  Similarity=0.322  Sum_probs=136.8

Q ss_pred             EcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh
Q 023316          106 LGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (284)
Q Consensus       106 lG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~  184 (284)
                      +|++|||||||+++|+.+.+. ...+|+|.++..+.+.+++..+.+.+|||+|+++|..++..||++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999999999888 4556889999989899999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          185 CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       185 ~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +||+.+..|++++.+.....|.||||||+||..      +.+..+ ...+++..++.|++|||++|.||+++|++++..+
T Consensus        81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~------~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD------RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECccccc------ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999998776656689999999731      112233 3467888899999999999999999999999988


Q ss_pred             hCC
Q 023316          265 FNL  267 (284)
Q Consensus       265 ~~~  267 (284)
                      ...
T Consensus       154 ~~~  156 (200)
T smart00176      154 IGD  156 (200)
T ss_pred             Hhc
Confidence            765

Ran is involved in the active transport of proteins through nuclear pores.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=6.7e-32  Score=226.29  Aligned_cols=162  Identities=20%  Similarity=0.331  Sum_probs=129.3

Q ss_pred             eeEEEEEcCCCCChHHHHH-HHhcCCC-----C-Ccccccce-eeeeEE--------EEECCeEEEEEEEeCCCCcCCcc
Q 023316          100 SLKISLLGDCQIGKTSFVV-KYVGNEQ-----E-RSLQMAGL-NLINKT--------LMVQGARIAFSIWDVGGDSRSFD  163 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~-~l~~~~~-----~-~~~~t~~~-~~~~~~--------~~~~~~~~~l~l~Dt~G~e~~~~  163 (284)
                      .+||+++|++|||||||+. ++.++.+     . ...||++. +.+...        +.++|..+.+++|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 6665543     3 33457752 333222        25789999999999999986  3


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC--------------CcccchH
Q 023316          164 HVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP--------------DLQWTIA  228 (284)
Q Consensus       164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~--------------~~~~~~~  228 (284)
                      +...+|+++|++|+|||++++.||+++. .|++.+.+..+..|.||||||+||......              ..+.+..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            5677899999999999999999999997 699999887765566899999997431100              1234458


Q ss_pred             HHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          229 TQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       229 ~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      ++++++|++++++|+||||++|.||+++|+.+++.
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            89999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=5.1e-32  Score=230.64  Aligned_cols=165  Identities=23%  Similarity=0.403  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|||||||+++|+.++|....+|++.++....+    ..+.+.+|||+|++.|..++..|++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            58999999999999999999999998667788887765443    45779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCC-------------C-CcccchHHHHHHHHHHcC------
Q 023316          181 LTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLP-------------P-DLQWTIATQARAYAKAMK------  239 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~-------------~-~~~~~~~~~~~~~a~~~~------  239 (284)
                      +++++||+++..|+..+.+.....+| ||||||+||.++..             . ..+.+..+++..+|++++      
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            99999999999888888765444444 79999999853110             0 123345889999999876      


Q ss_pred             --------CcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          240 --------ATLFFSSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       240 --------~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                              ++|+||||++|.||+++|..+++.++....
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~  194 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL  194 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                    689999999999999999999998875543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=8e-32  Score=218.62  Aligned_cols=154  Identities=22%  Similarity=0.357  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|||||||+.+|+.+.|...+++++.++ .+.+.++|..+.+++|||+|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            589999999999999999999998886556655555 47788999999999999999985     347789999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIF  257 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~~lf  257 (284)
                      +++++||+++..|++++..+..  ..|.++||||+||.   ....+.+..+++++++++. ++.|+||||++|.||+++|
T Consensus        75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103          75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS---ESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF  151 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh---hcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence            9999999999999999988753  33447999999962   1112334477888999886 5899999999999999999


Q ss_pred             HHHHHH
Q 023316          258 KFIMAK  263 (284)
Q Consensus       258 ~~l~~~  263 (284)
                      +.+++.
T Consensus       152 ~~~~~~  157 (158)
T cd04103         152 QEAAQK  157 (158)
T ss_pred             HHHHhh
Confidence            999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=8.7e-32  Score=228.47  Aligned_cols=164  Identities=23%  Similarity=0.434  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      .+||+++|++|||||||+++|+++.+. ...+|++.++..+.+.+ ++..+.+++|||+|++++..++..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999988 45578899998888887 5778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||+++++||+++..|++++.+... ..+| ||||||+|+.    + ...+..+++..+++.++++++++||++|.||++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE----S-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc----c-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999987643 4455 7999999963    2 123346778889999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023316          256 IFKFIMAKLFNLP  268 (284)
Q Consensus       256 lf~~l~~~i~~~~  268 (284)
                      +|+++++.+.+..
T Consensus       157 ~f~~l~~~~~~~~  169 (211)
T cd04111         157 AFELLTQEIYERI  169 (211)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887663

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.2e-31  Score=223.32  Aligned_cols=163  Identities=20%  Similarity=0.415  Sum_probs=143.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|.++.+. .+.+|.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998 46678898888888889998999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |+++++||+++..|+.++.......+| |+||||+|+.    +. .....+++..+++..+++++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV----NN-KVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc----cc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999887654455 7999999962    11 22336677888888899999999999999999999


Q ss_pred             HHHHHHhCCc
Q 023316          259 FIMAKLFNLP  268 (284)
Q Consensus       259 ~l~~~i~~~~  268 (284)
                      ++++.+....
T Consensus       156 ~l~~~~~~~~  165 (188)
T cd04125         156 LLVKLIIKRL  165 (188)
T ss_pred             HHHHHHHHHh
Confidence            9999987643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.2e-31  Score=224.17  Aligned_cols=165  Identities=25%  Similarity=0.475  Sum_probs=144.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      +||+++|++|||||||+++|.++++.  ...+|++.++..+.+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999999986  3456888888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||++++++|+++..|+..+.+.....+| ++|+||+|+.    .+ +....+++..+++.++++|+++||++|.|++++|
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~----~~-~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~  155 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS----GE-RVVKREDGERLAKEYGVPFMETSAKTGLNVELAF  155 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch----hc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988765555 6999999962    11 2233567888899999999999999999999999


Q ss_pred             HHHHHHHhCCccc
Q 023316          258 KFIMAKLFNLPWT  270 (284)
Q Consensus       258 ~~l~~~i~~~~~~  270 (284)
                      .++++.+.+..+.
T Consensus       156 ~~l~~~~~~~~~~  168 (191)
T cd04112         156 TAVAKELKHRKYE  168 (191)
T ss_pred             HHHHHHHHHhccc
Confidence            9999999877544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.5e-31  Score=217.66  Aligned_cols=159  Identities=20%  Similarity=0.299  Sum_probs=135.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ++||+++|++|||||||+++++.+.+...+ +|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            479999999999999999999998887444 4666544 46778889899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||++++++|+++..|+..+....  .+.|.++|+||+||.    .. .....+++..+++.++++++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  154 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE----DE-RVVGKEQGQNLARQWGCAFLETSAKAKINVNEI  154 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch----hc-cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence            99999999999999999987653  334457999999962    21 222355677888889999999999999999999


Q ss_pred             HHHHHHHH
Q 023316          257 FKFIMAKL  264 (284)
Q Consensus       257 f~~l~~~i  264 (284)
                      |.++++.+
T Consensus       155 ~~~l~~~l  162 (164)
T cd04175         155 FYDLVRQI  162 (164)
T ss_pred             HHHHHHHh
Confidence            99998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.1e-31  Score=224.17  Aligned_cols=163  Identities=18%  Similarity=0.285  Sum_probs=136.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      ||+++|++|||||||+++|+.+.|...+ +|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            6899999999999999999999988444 4666444 4566788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      +++++||+++..|++.+....    ...|+|+||||+|+.    .. .....+++.++++.++++++++||++|.|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  154 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV----YE-REVSTEEGAALARRLGCEFIEASAKTNVNVERA  154 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc----cc-CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence            999999999999999987653    234447999999962    21 223356678888889999999999999999999


Q ss_pred             HHHHHHHHhCCccc
Q 023316          257 FKFIMAKLFNLPWT  270 (284)
Q Consensus       257 f~~l~~~i~~~~~~  270 (284)
                      |+++++.+.+....
T Consensus       155 ~~~l~~~l~~~~~~  168 (190)
T cd04144         155 FYTLVRALRQQRQG  168 (190)
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999988655433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.7e-31  Score=217.39  Aligned_cols=160  Identities=26%  Similarity=0.458  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||++++.++++. ...++.+.++..+.+.+++..+.+++||++|++++..++..++++++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            589999999999999999999999988 6667999999888999999889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||++++++|+++..|+..+.+.....+| ++|+||+|+.    .. +....++...+++..+++++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  157 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR----HL-RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF  157 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            9999999999999999999888765555 6999999962    22 2233667788888889999999999999999999


Q ss_pred             HHHHHHH
Q 023316          258 KFIMAKL  264 (284)
Q Consensus       258 ~~l~~~i  264 (284)
                      ++++..+
T Consensus       158 ~~l~~~i  164 (165)
T cd01868         158 KQLLTEI  164 (165)
T ss_pred             HHHHHHh
Confidence            9999876

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.9e-31  Score=216.61  Aligned_cols=160  Identities=19%  Similarity=0.277  Sum_probs=135.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||+++++.+++...+.++..++....+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999855544434666778888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |+++++||+++..|+..+.+..  .+.|.++|+||+|+.    .. ......++..+++.++++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  155 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE----SE-REVSSAEGRALAEEWGCPFMETSAKSKTMVNELF  155 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch----hc-CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHH
Confidence            9999999999999999988763  234447999999962    11 1222456788888888999999999999999999


Q ss_pred             HHHHHHH
Q 023316          258 KFIMAKL  264 (284)
Q Consensus       258 ~~l~~~i  264 (284)
                      .++++.+
T Consensus       156 ~~l~~~l  162 (163)
T cd04176         156 AEIVRQM  162 (163)
T ss_pred             HHHHHhc
Confidence            9998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=3.1e-31  Score=214.24  Aligned_cols=158  Identities=16%  Similarity=0.259  Sum_probs=134.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|+++++...+ +|++.. ..+.+.+++..+.+++|||+|++++..++..|+++++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            379999999999999999999999987444 455544 456778888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||++++.+|+++..|+..+.+...  ..|+++|+||+|+.    .  .....+++..+++..+++++++||++|.|++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  153 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA----A--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEA  153 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHH
Confidence            999999999999999999887642  34557999999962    1  223366778888888999999999999999999


Q ss_pred             HHHHHHHH
Q 023316          257 FKFIMAKL  264 (284)
Q Consensus       257 f~~l~~~i  264 (284)
                      |+++++.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04138         154 FYTLVREI  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.7e-31  Score=216.42  Aligned_cols=158  Identities=21%  Similarity=0.406  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC--CeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      +||+++|++|+|||||+++|+++.+. ...+|++.++..+.+.++  +..+.+++|||+|+++|..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999999888 455688989887788777  788999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |||++++++|+.+..|++.+.+...+.|+|+|+||+|+.    .+ .....+++..+++.++++++++||++|.|++++|
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  155 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL----DQ-AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF  155 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc----cc-cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            999999999999999999998777666668999999962    11 1223577888999999999999999999999999


Q ss_pred             HHHHHH
Q 023316          258 KFIMAK  263 (284)
Q Consensus       258 ~~l~~~  263 (284)
                      +++...
T Consensus       156 ~~l~~~  161 (162)
T cd04106         156 EYLAEK  161 (162)
T ss_pred             HHHHHh
Confidence            998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03110 Rab GTPase; Provisional

Probab=99.98  E-value=2.8e-31  Score=226.16  Aligned_cols=164  Identities=26%  Similarity=0.442  Sum_probs=146.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.++.+. ...+|+|.++..+.+.+++..+.+++|||+|+++|..++..++++++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999999987 566799999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++++|+++..|+..+.+.....+| |+||||+||.    .. .....+++..++..++++++++||++|.|++++
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~----~~-~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l  165 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN----HL-RSVAEEDGQALAEKEGLSFLETSALEATNVEKA  165 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc----cc-cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999887654555 7999999962    21 223367788899999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |++++..+.+.
T Consensus       166 f~~l~~~i~~~  176 (216)
T PLN03110        166 FQTILLEIYHI  176 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99999888653

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.98  E-value=2.6e-31  Score=220.89  Aligned_cols=169  Identities=21%  Similarity=0.305  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      +||+++|++|||||||+++|.++.+. ...+|++.++.. .+... +..+.+++|||+|+++|..+++.+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            59999999999999999999999988 445577766643 45554 7889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~l  256 (284)
                      ||+++++||+++. .|+..+....++.|+|+||||+||....+.. ..+..+++.++++.+++ +++++||++|.||+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLD-RKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcccc-CCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999996 6999888776666668999999974322111 22346788899999998 9999999999999999


Q ss_pred             HHHHHHHHhCCcccc
Q 023316          257 FKFIMAKLFNLPWTV  271 (284)
Q Consensus       257 f~~l~~~i~~~~~~~  271 (284)
                      |..+++.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999998765443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=4.3e-31  Score=217.09  Aligned_cols=162  Identities=25%  Similarity=0.360  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|||||||++++.++.|...+.+++.+.....+.+++..+.+++|||+|+++|..+++.+++++|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999999988666666677777788889989999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023316          181 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHNI  251 (284)
Q Consensus       181 ~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~  251 (284)
                      +++++||+++. .|+..+.+...+.|.++||||+||.....       ...+.+..+++..+++..+. +|+++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            99999999985 79998887655555589999999732110       01223347788999999998 89999999999


Q ss_pred             CHHHHHHHHHH
Q 023316          252 NVNKIFKFIMA  262 (284)
Q Consensus       252 ~v~~lf~~l~~  262 (284)
                      ||+++|+.++.
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999998875

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01866 Rab2 Rab2 subfamily

Probab=99.98  E-value=4.2e-31  Score=216.18  Aligned_cols=162  Identities=22%  Similarity=0.384  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||++++.+.++. ...++.|.++..+.+.+++..+.+.+|||+|++++..+...+++.+|++|+|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999888 4456888998888888999899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||+++++||+++..|+.+++++.. ..|.|+|+||.|+.+    . .....++++.+++..+++++++||++++|++++|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~----~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~  158 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES----R-REVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF  158 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc----c-cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999988754 444589999999631    1 2233667888888899999999999999999999


Q ss_pred             HHHHHHHhC
Q 023316          258 KFIMAKLFN  266 (284)
Q Consensus       258 ~~l~~~i~~  266 (284)
                      .++++.+++
T Consensus       159 ~~~~~~~~~  167 (168)
T cd01866         159 INTAKEIYE  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04118 Rab24 Rab24 subfamily

Probab=99.98  E-value=5e-31  Score=220.40  Aligned_cols=167  Identities=24%  Similarity=0.355  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC--cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      +||+++|++|||||||+++|+++++..  ..+|++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            599999999999999999999999873  455888888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ||++++++|+++..|++.+.....+.|.++|+||+|+..... ....+..+++..++..++++++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR-SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc-ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988765556689999999732211 1122235667888888899999999999999999999


Q ss_pred             HHHHHHhCCc
Q 023316          259 FIMAKLFNLP  268 (284)
Q Consensus       259 ~l~~~i~~~~  268 (284)
                      ++++.+.+.+
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999887653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=4.6e-31  Score=216.62  Aligned_cols=163  Identities=22%  Similarity=0.354  Sum_probs=137.0

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      |+++|++|||||||+++|.++.+...+ ++.+. .+...+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFE-NYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEe-eeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            689999999999999999999988444 45544 4456677889999999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC------CC-cccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316          182 TSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP------PD-LQWTIATQARAYAKAMKA-TLFFSSATHNIN  252 (284)
Q Consensus       182 ~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~-~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~  252 (284)
                      ++++||+++. .|+..+.++.+..|.||||||+|+..+..      .. ...+..+++.++++..++ +++++||++|.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            9999999996 69999988777767789999999742111      00 112346778899999996 999999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 023316          253 VNKIFKFIMAKLFN  266 (284)
Q Consensus       253 v~~lf~~l~~~i~~  266 (284)
                      |+++|+.+++.+.+
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PTZ00369 Ras-like protein; Provisional

Probab=99.98  E-value=4.9e-31  Score=220.03  Aligned_cols=163  Identities=16%  Similarity=0.261  Sum_probs=139.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.++.+... .+|++.++ .+.+.+++..+.+++|||+|+++|..++..|++++|++|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            368999999999999999999999998844 45666655 5677889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||++++++|+++..|+..+.+...  ..|.|+|+||+|+.    +. ..+..+++..+++.++++++++||++|.||++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----~~-~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD----SE-RQVSTGEGQELAKSFGIPFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-cccCHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence            9999999999999999999877643  33447999999962    22 22235667788888899999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|.++++.+.+.
T Consensus       158 ~~~~l~~~l~~~  169 (189)
T PTZ00369        158 AFYELVREIRKY  169 (189)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888654

>cd01864 Rab19 Rab19 subfamily

Probab=99.98  E-value=5.1e-31  Score=214.74  Aligned_cols=160  Identities=26%  Similarity=0.436  Sum_probs=138.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|+|||||++++.++.+. ...++.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            3689999999999999999999999888 444588888888888899988999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~  255 (284)
                      |||++++++|+++..|+..+.......+ +|+|+||+|+.    .. .....+++..+++..+. .++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  156 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE----EQ-REVLFEEACTLAEKNGMLAVLETSAKESQNVEE  156 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence            9999999999999999999987654444 47999999963    11 22346678888888886 689999999999999


Q ss_pred             HHHHHHHH
Q 023316          256 IFKFIMAK  263 (284)
Q Consensus       256 lf~~l~~~  263 (284)
                      +|+++++.
T Consensus       157 ~~~~l~~~  164 (165)
T cd01864         157 AFLLMATE  164 (165)
T ss_pred             HHHHHHHh
Confidence            99999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04116 Rab9 Rab9 subfamily

Probab=99.98  E-value=7e-31  Score=214.86  Aligned_cols=159  Identities=25%  Similarity=0.418  Sum_probs=139.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|+++.+. ...++.|.++..+.+.+++..+.+++|||+|++++..++..+++.+|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            4699999999999999999999999988 556788988888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC----CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ----TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNI  251 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~  251 (284)
                      |||+++++||+.+..|+.++.....    ...| ++||||+|+.      ......+++.+++++++. +++++||++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  157 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP------ERQVSTEEAQAWCRENGDYPYFETSAKDAT  157 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc------ccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence            9999999999999999998876542    2345 7999999962      222346778889988884 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 023316          252 NVNKIFKFIMAK  263 (284)
Q Consensus       252 ~v~~lf~~l~~~  263 (284)
                      |+.++|+++++.
T Consensus       158 ~v~~~~~~~~~~  169 (170)
T cd04116         158 NVAAAFEEAVRR  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=6.6e-31  Score=213.02  Aligned_cols=159  Identities=25%  Similarity=0.395  Sum_probs=139.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|.++++. ...++.+.++....+.+++..+.+++||++|++.|..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            59999999999999999999999987 55668888888888889998899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |++++++|+++..|+..+........| ++|+||+|+.    + ......+++..+++..+++++++||+++.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  155 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA----D-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFL  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc----h-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999998776544444 7999999962    2 122346778889999999999999999999999999


Q ss_pred             HHHHHH
Q 023316          259 FIMAKL  264 (284)
Q Consensus       259 ~l~~~i  264 (284)
                      ++++.+
T Consensus       156 ~~~~~~  161 (161)
T cd04113         156 KCARSI  161 (161)
T ss_pred             HHHHhC
Confidence            998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=1.2e-30  Score=212.86  Aligned_cols=157  Identities=17%  Similarity=0.261  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|+++.+.. ..+|.+.. +...+..++..+.+++|||+|+++|..++..+++.++++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            799999999999999999999999874 44555544 3455667778899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |+++++||+++..|++.+.+..    .+.|.++||||+|+.    .. .....+++..++..++++++++||++|.|+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~  155 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES----HK-REVSSNEGAACATEWNCAFMETSAKTNHNVQE  155 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc----cc-CeecHHHHHHHHHHhCCcEEEeecCCCCCHHH
Confidence            9999999999999988887653    234557999999962    11 22335677888888899999999999999999


Q ss_pred             HHHHHHHH
Q 023316          256 IFKFIMAK  263 (284)
Q Consensus       256 lf~~l~~~  263 (284)
                      +|++|+..
T Consensus       156 ~f~~l~~~  163 (165)
T cd04140         156 LFQELLNL  163 (165)
T ss_pred             HHHHHHhc
Confidence            99998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=221.29  Aligned_cols=164  Identities=21%  Similarity=0.375  Sum_probs=144.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|++.++. ...+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            3689999999999999999999999888 556688999988889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++++|+.+..|+..+.......+| ++|+||+||.    . ......+++.++++.++++++++||+++.||+++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~  159 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA----H-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc----c-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999988776554455 7999999962    2 1223467888999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |+++++.+++.
T Consensus       160 f~~l~~~~~~~  170 (210)
T PLN03108        160 FIKTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=1.1e-31  Score=220.25  Aligned_cols=171  Identities=20%  Similarity=0.299  Sum_probs=150.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+|++|||++++|||+|+..|..+.|...|.++-.|-+...+.++ |+.+.+.+|||+|||+|..+++..|+++|+||+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            4789999999999999999999999999666555557777888995 999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023316          178 MFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMK-ATLFFSSAT  248 (284)
Q Consensus       178 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~-~~~~~~Sa~  248 (284)
                      ||++.+++||+++. +|+.+++++++..|.||||+|.||+++...       ....+..+++.++|++.| +.|+|+||+
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~  162 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSAL  162 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhh
Confidence            99999999999986 899999999999888999999998743211       112344889999999999 589999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCcc
Q 023316          249 HNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      ++.|++++|+..+..++..+.
T Consensus       163 tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  163 TQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999988765

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=2e-30  Score=210.75  Aligned_cols=160  Identities=16%  Similarity=0.261  Sum_probs=134.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|||||||+++|++..+...+.++..+...+.+.+++..+.+++|||+|++++..++..+++++|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            59999999999999999999999888444433335556777888889999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ++++++|+++..|+..+.+...  +.|.|+||||+|+.    +. .....+++..+++..+++++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  155 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE----SE-RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-ceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHH
Confidence            9999999999999988876532  34447999999962    21 22335677888888899999999999999999999


Q ss_pred             HHHHHHh
Q 023316          259 FIMAKLF  265 (284)
Q Consensus       259 ~l~~~i~  265 (284)
                      +++..+.
T Consensus       156 ~l~~~~~  162 (164)
T smart00173      156 DLVREIR  162 (164)
T ss_pred             HHHHHHh
Confidence            9998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=1.3e-30  Score=211.75  Aligned_cols=159  Identities=21%  Similarity=0.371  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC--CCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~--~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      +||+++|++|||||||++++..+  .+. ...+|+|.++..+.+.++ +..+.+.+|||+|++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            59999999999999999999865  566 455688999888877775 67799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      +|||++++++|+++..|++.+.+.....|.|+|+||+|+.    +. ......++..++...+++++++||++|.|++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  155 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA----DK-AEVTDAQAQAFAQANQLKFFKTSALRGVGYEEP  155 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHH
Confidence            9999999999999999999998876555668999999962    11 222345566778888899999999999999999


Q ss_pred             HHHHHHHH
Q 023316          257 FKFIMAKL  264 (284)
Q Consensus       257 f~~l~~~i  264 (284)
                      |+.+++.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04101         156 FESLARAF  163 (164)
T ss_pred             HHHHHHHh
Confidence            99999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=2.2e-30  Score=217.75  Aligned_cols=165  Identities=15%  Similarity=0.204  Sum_probs=135.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------ccccccC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACKD  171 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~~~  171 (284)
                      +||+|+|++|||||||+++|++++|. ...+|++.+++...+.++|..+.+++|||+|.+.+...        ...++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999988 55668888887777888999999999999998765322        2345789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEc
Q 023316          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSS  246 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~S  246 (284)
                      +|++|+|||+++++||+.+..|++.+.+..    ...|.|+||||+|+.    .. +.+..+++..++. ..+++|++||
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~e~S  155 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ----RH-RFAPRHVLSVLVRKSWKCGYLECS  155 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc----cc-ccccHHHHHHHHHHhcCCcEEEec
Confidence            999999999999999999999999987763    334447999999962    22 2233555666654 5689999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCccc
Q 023316          247 ATHNINVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~~~~~  270 (284)
                      |++|.||+++|+.++..++.....
T Consensus       156 ak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         156 AKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCCCCCHHHHHHHHHHHhhccCCC
Confidence            999999999999999998866543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=1.8e-30  Score=212.88  Aligned_cols=160  Identities=27%  Similarity=0.465  Sum_probs=139.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-ccccccccCCcEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILF  177 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-~~~~~~~~~ad~iil  177 (284)
                      .+||+++|++|||||||+++++...+. ...++.+.++..+.+.+++..+.+++|||+|++++. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            489999999999999999999999988 556688889988889999999999999999999987 578889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC---CcC
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NIN  252 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~---~~~  252 (284)
                      |||++++++|+.+..|++.+..+.  .+.|.|+|+||+|+.    .. ..+..+++..+++..+++|+++||++   +.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~  156 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR----EQ-IQVPTDLAQRFADAHSMPLFETSAKDPSENDH  156 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch----hh-cCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC
Confidence            999999999999999999998764  234458999999962    21 22336778888999999999999999   999


Q ss_pred             HHHHHHHHHHHH
Q 023316          253 VNKIFKFIMAKL  264 (284)
Q Consensus       253 v~~lf~~l~~~i  264 (284)
                      ++++|..+++.+
T Consensus       157 i~~~f~~l~~~~  168 (170)
T cd04115         157 VEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=3.4e-30  Score=209.10  Aligned_cols=159  Identities=16%  Similarity=0.258  Sum_probs=134.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++++++.+...+ ++++ +.......+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            479999999999999999999998887444 4555 44456677889889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||++++++|+++..|+..+.+..  .+.|.|+|+||+|+.    .. .....+++..+++..+++++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  155 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE----HQ-RKVSREEGQELARKLKIPYIETSAKDRLNVDKA  155 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc----cc-ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHH
Confidence            99999999999999999987753  234557999999962    21 222355678888888999999999999999999


Q ss_pred             HHHHHHHH
Q 023316          257 FKFIMAKL  264 (284)
Q Consensus       257 f~~l~~~i  264 (284)
                      |+++++.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04145         156 FHDLVRVI  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=7.2e-30  Score=209.53  Aligned_cols=165  Identities=17%  Similarity=0.272  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|+|||||+++|.++++...+.++..+.....+.+++..+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            59999999999999999999999988544444445555677888989999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-------cccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023316          181 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-------LQWTIATQARAYAKAMKA-TLFFSSATHNI  251 (284)
Q Consensus       181 ~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~  251 (284)
                      ++++++|+++. .|++.+.+..+..|.++||||+||.++-...       ...+..+++..+++.+++ +++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            99999999996 7999888775566668999999973221100       112336778899999986 79999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 023316          252 NVNKIFKFIMAKLF  265 (284)
Q Consensus       252 ~v~~lf~~l~~~i~  265 (284)
                      |++++|+.++..++
T Consensus       161 gi~~~f~~~~~~~~  174 (174)
T cd04135         161 GLKTVFDEAILAIL  174 (174)
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999998763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=6e-30  Score=207.15  Aligned_cols=158  Identities=23%  Similarity=0.437  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||++++++.++. ...++++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988 56678899999999999998899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCC-CceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~-~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |++++++|+.+..|+..+...... .|.++++||+|+.    . ......++...+++..+++++++||+++.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS----D-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc----c-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998776553 4557999999962    1 122346677888888899999999999999999999


Q ss_pred             HHHHH
Q 023316          259 FIMAK  263 (284)
Q Consensus       259 ~l~~~  263 (284)
                      ++.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            99875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=9.9e-30  Score=215.81  Aligned_cols=168  Identities=26%  Similarity=0.458  Sum_probs=143.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|.+..+....++.+.++....+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv   92 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV   92 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999988876667888888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHH-HHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          179 FDLTSRCTLNSIVG-WYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~-~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      ||++++++|+++.. |...+..+..  ..+.|+|+||+|+.    .. .....++...+++..++.|+++||+++.|+++
T Consensus        93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~----~~-~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE----SE-RDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-CccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999975 7777765532  33558999999963    22 12235677788888999999999999999999


Q ss_pred             HHHHHHHHHhCCcccc
Q 023316          256 IFKFIMAKLFNLPWTV  271 (284)
Q Consensus       256 lf~~l~~~i~~~~~~~  271 (284)
                      +|+++...+...+...
T Consensus       168 l~~~l~~~~~~~~~~~  183 (211)
T PLN03118        168 CFEELALKIMEVPSLL  183 (211)
T ss_pred             HHHHHHHHHHhhhhhh
Confidence            9999999998776443

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=7.7e-30  Score=206.82  Aligned_cols=161  Identities=26%  Similarity=0.489  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||++++.+..+. ...++.+.++....+.+++..+.+++||++|++++..+...+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            59999999999999999999999887 55568888888888889998899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |++++++++.+..|++.+..+....+| ++|+||+|+.    .. .....+.++++++.++++++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~  155 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE----DQ-RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFE  155 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc----cc-cCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999887644455 7999999962    11 12235667788888999999999999999999999


Q ss_pred             HHHHHHhC
Q 023316          259 FIMAKLFN  266 (284)
Q Consensus       259 ~l~~~i~~  266 (284)
                      ++...+.+
T Consensus       156 ~i~~~~~~  163 (164)
T smart00175      156 ELAREILK  163 (164)
T ss_pred             HHHHHHhh
Confidence            99988754

Rab GTPases are implicated in vesicle trafficking.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=1.5e-29  Score=205.25  Aligned_cols=160  Identities=29%  Similarity=0.478  Sum_probs=140.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ++||+++|++|||||||++++.++++.. ..++.+.++..+.+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999999884 667889888888999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||++++++|+.+..|+..+........| ++++||+|+.    .. .....++...+++.++++++++||++|.|++++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  155 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE----SK-RQVSTEEAQEYADENGLLFFETSAKTGENVNELF  155 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-CcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            9999999999999999999887644444 7999999962    11 2233566778888889999999999999999999


Q ss_pred             HHHHHHH
Q 023316          258 KFIMAKL  264 (284)
Q Consensus       258 ~~l~~~i  264 (284)
                      ++++..+
T Consensus       156 ~~l~~~l  162 (163)
T cd01860         156 TEIAKKL  162 (163)
T ss_pred             HHHHHHh
Confidence            9999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1e-29  Score=208.37  Aligned_cols=162  Identities=12%  Similarity=0.100  Sum_probs=136.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ..+||+++|++|||||||+++|++++|. .. .+|++.++..+.+.++|..+.+.+||++|++.+..++..+++++|++|
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4689999999999999999999999987 44 458888888788888998899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++|+.+..|++.+... .+.|.++|+||+|+.    +. ......+..++++.+++ .++++||++|.|+++
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  156 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLD----EQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNE  156 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEccccc----cc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHH
Confidence            999999999999999999876432 234558999999962    21 11123445677888887 479999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+.+++.+.+
T Consensus       157 lf~~l~~~~~~  167 (169)
T cd01892         157 LFTKLATAAQY  167 (169)
T ss_pred             HHHHHHHHhhC
Confidence            99999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.3e-29  Score=206.50  Aligned_cols=158  Identities=18%  Similarity=0.308  Sum_probs=130.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcC-CcccccccccCCcEEEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~~~~~~~~ad~iilv~  179 (284)
                      ||+++|++|||||||+++++.+.+...++ +++.. ..+.+.+++..+.+++|||+|++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            69999999999999999999988875444 54433 356677889999999999999996 3456778899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC-cCHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN-INVNK  255 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~-~~v~~  255 (284)
                      |+++++||+.+..|+..+.....   +.|.|+||||+|+.    .. ..+..+++..+++..+++|+++||++| .||++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~  154 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL----HY-RQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH----Hh-CccCHHHHHHHHHHcCCEEEEeCCCCCchhHHH
Confidence            99999999999999998887642   45558999999962    11 223367788889999999999999999 59999


Q ss_pred             HHHHHHHHHh
Q 023316          256 IFKFIMAKLF  265 (284)
Q Consensus       256 lf~~l~~~i~  265 (284)
                      +|+.+++.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=1.6e-29  Score=219.10  Aligned_cols=158  Identities=16%  Similarity=0.259  Sum_probs=132.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|++++|...+ +|++ ++..+.+.+++..+.++||||+|++.|..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998554 4554 777788899999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH---------C-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCC
Q 023316          180 DLTSRCTLNSIVGWYSEARKW---------N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSAT  248 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~---------~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~  248 (284)
                      |+++++||+++..|++++...         . .+.|.|+|+||+|+.    .. ..+..+++.+++.. .++.++++||+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~----~~-~~v~~~ei~~~~~~~~~~~~~evSAk  154 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD----FP-REVQRDEVEQLVGGDENCAYFEVSAK  154 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch----hc-cccCHHHHHHHHHhcCCCEEEEEeCC
Confidence            999999999999999998754         1 234448999999962    11 22335666666553 46889999999


Q ss_pred             CCcCHHHHHHHHHHHH
Q 023316          249 HNINVNKIFKFIMAKL  264 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i  264 (284)
                      +|.|++++|++++..+
T Consensus       155 tg~gI~elf~~L~~~~  170 (247)
T cd04143         155 KNSNLDEMFRALFSLA  170 (247)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=2.7e-29  Score=214.61  Aligned_cols=162  Identities=17%  Similarity=0.206  Sum_probs=134.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-Cccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccccccc-CCcEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK-DAVAILF  177 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~-~ad~iil  177 (284)
                      +||+++|++|||||||+++|+++++. ..+. +.+.++..+++.+++..+.+.+|||+|++.  .+...+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 5555 444588888899999999999999999982  34455667 9999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||+++++||+.+..|++.+.+..  ...|.|+|+||+|+.    .. ..+..+++..++..++++++++||++|.||++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~----~~-~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~  153 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA----RS-REVSVQEGRACAVVFDCKFIETSAGLQHNVDE  153 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc----cc-ceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            999999999999999999998764  344558999999962    22 22335667888888999999999999999999


Q ss_pred             HHHHHHHHHhCCcc
Q 023316          256 IFKFIMAKLFNLPW  269 (284)
Q Consensus       256 lf~~l~~~i~~~~~  269 (284)
                      +|+++++.+.....
T Consensus       154 l~~~l~~~~~~~~~  167 (221)
T cd04148         154 LLEGIVRQIRLRRD  167 (221)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999998864443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=212.34  Aligned_cols=163  Identities=18%  Similarity=0.295  Sum_probs=145.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|.+|||||+|+.+|..+.|...|.++..+.+.+.+.+++..+.+.|+||+|+++|..+...++++++++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            36899999999999999999999999996666555588999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |+++++.||+.+..+++.|.+. .....| |+||||+||    ... +.+..++++.+++.++++|+|+||+.+.||+++
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl----~~~-R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDL----ERE-RQVSEEEGKALARSWGCAFIETSAKLNYNVDEV  156 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccc----hhc-cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHH
Confidence            9999999999999999999443 334445 799999997    221 444588899999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |..+++.+-.
T Consensus       157 F~~L~r~~~~  166 (196)
T KOG0395|consen  157 FYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=4.9e-29  Score=203.83  Aligned_cols=160  Identities=19%  Similarity=0.283  Sum_probs=134.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ++||+++|++|||||||+++|.++.+...+ +|++. ...+.+.+++..+.+++|||+|+++|..+++.+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            379999999999999999999999987444 45554 4467778889889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-C-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN-Q-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~-~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~~v~~  255 (284)
                      ||++++++|+.+..|.+.+.+.. . +.|.|+++||.|+.    +. +....+++..+++.++ ++++++||++|.|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~----~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~  154 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE----DD-RQVSREDGVSLSQQWGNVPFYETSARKRTNVDE  154 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc----cc-CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence            99999999999999999887642 2 34447999999962    22 2223556777888887 8999999999999999


Q ss_pred             HHHHHHHHHh
Q 023316          256 IFKFIMAKLF  265 (284)
Q Consensus       256 lf~~l~~~i~  265 (284)
                      +|++++..++
T Consensus       155 ~f~~i~~~~~  164 (168)
T cd04177         155 VFIDLVRQII  164 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=5.8e-29  Score=204.33  Aligned_cols=163  Identities=21%  Similarity=0.324  Sum_probs=134.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .||+++|++|||||||+++|.++.+.. ..+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            599999999999999999999999884 4456665543 56778888999999999999999999989999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316          180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSATHN  250 (284)
Q Consensus       180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~  250 (284)
                      |++++++|+++. .|+..+.+...+.|+++|+||+|+......       ....+...+++++++..+. +++++||++|
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence            999999999985 699988877666666899999997322100       0111235678888888875 8999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      .|++++|+++++.+
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=4.5e-29  Score=204.02  Aligned_cols=162  Identities=23%  Similarity=0.366  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||++++.+..+. ...++.+.++..+.+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887 44568888888888889999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC-----CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINV  253 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~-----~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~~v  253 (284)
                      |++++++|+++..|.+.+.....     +.|+++|+||+|+..    + .....++...+++..+ ++++++||++|.|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  155 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE----K-RQVSTKKAQQWCQSNGNIPYFETSAKEAINV  155 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc----c-cccCHHHHHHHHHHcCCceEEEEECCCCCCH
Confidence            99999999999999988766543     345579999999621    1 2223566777888887 79999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 023316          254 NKIFKFIMAKLFNL  267 (284)
Q Consensus       254 ~~lf~~l~~~i~~~  267 (284)
                      +++|+++.+.+++.
T Consensus       156 ~~l~~~i~~~~~~~  169 (172)
T cd01862         156 EQAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=7e-29  Score=201.00  Aligned_cols=157  Identities=24%  Similarity=0.455  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++|.+..+. ...++.+.++....+.+++..+.+.+|||+|++.+..+...+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            59999999999999999999999887 46668888888778888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |++++++|+.+..|++.+.++..  ..|.++|+||+|+.      ......++...+++..+++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  154 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE------NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAF  154 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc------ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHH
Confidence            99999999999999999988743  33447999999962      12223567788888899999999999999999999


Q ss_pred             HHHHHH
Q 023316          258 KFIMAK  263 (284)
Q Consensus       258 ~~l~~~  263 (284)
                      +.+...
T Consensus       155 ~~~~~~  160 (161)
T cd01863         155 EELVEK  160 (161)
T ss_pred             HHHHHh
Confidence            998865

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=6.5e-29  Score=200.68  Aligned_cols=159  Identities=27%  Similarity=0.510  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|.+|||||||+++++++.+. ...++++.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            59999999999999999999999887 44457777777778888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |++++++++.+..|++++.+......| ++|+||+|+.    .. .....++..++++..+++++++||++|+|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~----~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~  155 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE----RQ-RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFL  155 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999887654444 7999999962    22 22235667778888899999999999999999999


Q ss_pred             HHHHHH
Q 023316          259 FIMAKL  264 (284)
Q Consensus       259 ~l~~~i  264 (284)
                      ++.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04123         156 SLAKRM  161 (162)
T ss_pred             HHHHHh
Confidence            998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.1e-28  Score=205.53  Aligned_cols=168  Identities=21%  Similarity=0.288  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .||+++|++|+|||||++++..+.+.. ..+|.+.++. ..+.+++..+.+.+|||+|++.+....+.++++++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            699999999999999999999888774 3345554443 46677888899999999999999888888899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-----cccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316          180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-----LQWTIATQARAYAKAMKA-TLFFSSATHNIN  252 (284)
Q Consensus       180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~  252 (284)
                      |+++.++|+++. .|++.+.++.++.|+|+||||+|+..+....     .+.+..+++..+++.+++ +|++|||++|.|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  160 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG  160 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence            999999999997 6999998877776668999999974321111     122335678889999985 899999999999


Q ss_pred             HHHHHHHHHHHHhCCcc
Q 023316          253 VNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       253 v~~lf~~l~~~i~~~~~  269 (284)
                      |+++|+++++.+.....
T Consensus       161 v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         161 VDDVFEAATRAALLVRK  177 (187)
T ss_pred             HHHHHHHHHHHHhcccC
Confidence            99999999988765543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04114 Rab30 Rab30 subfamily

Probab=99.96  E-value=2e-28  Score=199.90  Aligned_cols=161  Identities=24%  Similarity=0.415  Sum_probs=139.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||++++.+..+. ...++++.++..+.+.+++..+.+.+||++|++.|...+..+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            4689999999999999999999988877 556688888888888999999999999999999999998999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++++|+.+..|+.++.......+| ++|+||+|+.    .. .....+..+.+.+.....++++||++|.|++++
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~----~~-~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA----ER-REVSQQRAEEFSDAQDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence            99999999999999999999887655555 8999999962    22 222245567777777889999999999999999


Q ss_pred             HHHHHHHH
Q 023316          257 FKFIMAKL  264 (284)
Q Consensus       257 f~~l~~~i  264 (284)
                      |+++++.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99999765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=4.1e-28  Score=198.07  Aligned_cols=161  Identities=20%  Similarity=0.281  Sum_probs=127.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|||||||+++|.++++...++++..++ .....+++..+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999999875566544433 3445567788999999999999988888888999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc-chHHHHHHHHHHcC--CcEEEEcCCCCcCHHHH
Q 023316          181 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW-TIATQARAYAKAMK--ATLFFSSATHNINVNKI  256 (284)
Q Consensus       181 ~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~l  256 (284)
                      ++++++|+++. .|++.++......|+++|+||+|+.+    .... ..+++...+++.++  .+++++||++|.|++++
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  155 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD----GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEV  155 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc----ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHH
Confidence            99999999985 79888887766556689999999732    1111 11333444444443  37999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |+.+...+..
T Consensus       156 f~~~~~~~~~  165 (166)
T cd01893         156 FYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHhcC
Confidence            9999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=5.6e-28  Score=195.71  Aligned_cols=159  Identities=16%  Similarity=0.243  Sum_probs=134.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|++|||||||+++++..++...+. +++ +...+...+++..+.+++|||+|++.+..++..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999999885444 554 444566778888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |++++.+|+++..|+..+....  .+.|+++|+||+|+..    . ......+...+++.++++++++||++|.|++++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~----~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  154 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED----K-RQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF  154 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc----c-cccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence            9999999999999998888763  3455589999999631    1 1123556677888888999999999999999999


Q ss_pred             HHHHHHHh
Q 023316          258 KFIMAKLF  265 (284)
Q Consensus       258 ~~l~~~i~  265 (284)
                      ++++..+.
T Consensus       155 ~~l~~~~~  162 (164)
T cd04139         155 YDLVREIR  162 (164)
T ss_pred             HHHHHHHH
Confidence            99998775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=1.2e-28  Score=201.90  Aligned_cols=152  Identities=16%  Similarity=0.195  Sum_probs=121.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||+++|..+.+....+|+|.++.  .+..  ..+.+++|||+|++++..+++.+++++|++|+||
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~   84 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   84 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            68999999999999999999998888766678887764  3333  4578999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCcC
Q 023316          180 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNIN  252 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~~~Sa~~~~~  252 (284)
                      |++++.+|+++..|+.++...  ..+.|.+||+||+|+.    ..   ...++++.+++     ...+.++++||++|.|
T Consensus        85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~~---~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~g  157 (168)
T cd04149          85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP----DA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG  157 (168)
T ss_pred             eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc----cC---CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCC
Confidence            999999999998887776543  2344558999999962    11   22344444432     1235789999999999


Q ss_pred             HHHHHHHHHH
Q 023316          253 VNKIFKFIMA  262 (284)
Q Consensus       253 v~~lf~~l~~  262 (284)
                      |+++|++|.+
T Consensus       158 v~~~~~~l~~  167 (168)
T cd04149         158 LYEGLTWLSS  167 (168)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=9.7e-28  Score=204.12  Aligned_cols=166  Identities=23%  Similarity=0.361  Sum_probs=141.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+++|++|||||||+++++.+.+. ...+|.+.++....+..++..+.+++|||+|+++|..++..++++++++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            445699999999999999999999988887 5567899999888888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      ++|||+++++||.++..|+..+.......|.+++|||+|+.    +  ... ..+...+++..++.++++||++|.|+++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~----~--~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  158 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK----D--RQV-KARQITFHRKKNLQYYDISAKSNYNFEK  158 (215)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc----c--ccC-CHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999998776555557899999962    1  111 1223457778889999999999999999


Q ss_pred             HHHHHHHHHhCCcc
Q 023316          256 IFKFIMAKLFNLPW  269 (284)
Q Consensus       256 lf~~l~~~i~~~~~  269 (284)
                      +|.++++.+...+.
T Consensus       159 ~f~~ia~~l~~~p~  172 (215)
T PTZ00132        159 PFLWLARRLTNDPN  172 (215)
T ss_pred             HHHHHHHHHhhccc
Confidence            99999999876543

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=1.1e-28  Score=203.45  Aligned_cols=155  Identities=17%  Similarity=0.214  Sum_probs=121.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||++++..+++....+|+|.++..  +..  ..+.+++|||+|++++..++..|++++|++|+||
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~   88 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV   88 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence            589999999999999999999888877666788877653  333  3478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCCCCcC
Q 023316          180 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSATHNIN  252 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----a~~~~~~~~~~Sa~~~~~  252 (284)
                      |+++++++++...|+..+...  ....|.+||+||+||.+..+       .++....     ++...+.++++||++|.|
T Consensus        89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  161 (175)
T smart00177       89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-------AAEITEKLGLHSIRDRNWYIQPTCATSGDG  161 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-------HHHHHHHhCccccCCCcEEEEEeeCCCCCC
Confidence            999999999999888877543  23344579999999632211       1111111     122234577899999999


Q ss_pred             HHHHHHHHHHHHh
Q 023316          253 VNKIFKFIMAKLF  265 (284)
Q Consensus       253 v~~lf~~l~~~i~  265 (284)
                      |+++|++|...+.
T Consensus       162 v~e~~~~l~~~~~  174 (175)
T smart00177      162 LYEGLTWLSNNLK  174 (175)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=1.8e-28  Score=199.05  Aligned_cols=152  Identities=17%  Similarity=0.225  Sum_probs=118.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|||||||++++..+++....||+|.++.  .+..  ..+.+++|||+|++++..++..+|+++|++|+|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            5899999999999999999988888766778887753  3333  35778999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH-C-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCHH
Q 023316          181 LTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINVN  254 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~-~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~Sa~~~~~v~  254 (284)
                      ++++.+|+++..|+..+... . ...|.+|++||+||.    ..  ....+....++    ...++.++++||++|+||+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~  150 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP----NA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLY  150 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC----CC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence            99999999999888777543 2 234557999999962    11  11122222222    1234467789999999999


Q ss_pred             HHHHHHHH
Q 023316          255 KIFKFIMA  262 (284)
Q Consensus       255 ~lf~~l~~  262 (284)
                      ++|++|.+
T Consensus       151 ~~~~~l~~  158 (159)
T cd04150         151 EGLDWLSN  158 (159)
T ss_pred             HHHHHHhc
Confidence            99999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=1.7e-27  Score=194.53  Aligned_cols=162  Identities=21%  Similarity=0.339  Sum_probs=132.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|||||||+++|++.++...+.++..+.....+..++..+.+++|||+|++++......+++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            59999999999999999999999986333333334455666778889999999999999998888899999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC------cccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316          181 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD------LQWTIATQARAYAKAMKA-TLFFSSATHNIN  252 (284)
Q Consensus       181 ~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~------~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~  252 (284)
                      ++++.+|.... .|+..+..+....|.++|+||+|+....+..      ......+++..++..+++ +++++||++|+|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG  160 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence            99999998875 6998888877666668999999973221110      011236677888888887 999999999999


Q ss_pred             HHHHHHHHHH
Q 023316          253 VNKIFKFIMA  262 (284)
Q Consensus       253 v~~lf~~l~~  262 (284)
                      ++++|.++++
T Consensus       161 i~~l~~~i~~  170 (171)
T cd00157         161 VKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=3.8e-28  Score=198.99  Aligned_cols=157  Identities=17%  Similarity=0.198  Sum_probs=126.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      ||+++|+++||||||+++|.+..+....+|+|.++.  .+..  ..+.+++|||+|++++..++..+++++|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            689999999999999999999987776678887764  3333  357789999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC------CcEEEEcCCCCcCH
Q 023316          182 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK------ATLFFSSATHNINV  253 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~------~~~~~~Sa~~~~~v  253 (284)
                      +++++|+++..|+..+.+..  .+.|.+||+||+||.    .   ....++++++++..+      +.++++||++|.||
T Consensus        77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  149 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA----G---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL  149 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc----c---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence            99999999999998886542  234557999999962    1   123455555554322      36788999999999


Q ss_pred             HHHHHHHHHHHhCCcc
Q 023316          254 NKIFKFIMAKLFNLPW  269 (284)
Q Consensus       254 ~~lf~~l~~~i~~~~~  269 (284)
                      +++|+++++.+...++
T Consensus       150 ~~~f~~l~~~~~~~~~  165 (169)
T cd04158         150 YEGLDWLSRQLVAAGV  165 (169)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999988876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.1e-27  Score=201.47  Aligned_cols=150  Identities=23%  Similarity=0.305  Sum_probs=121.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-----CeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-----GARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~  174 (284)
                      +||+++|+++||||||+++|+++.|. ...+|+|.++..+.+.++     +..+.+++|||+|+++|..++..||+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999999999998 555688988887877774     578999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHC-------------------CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHH
Q 023316          175 ILFMFDLTSRCTLNSIVGWYSEARKWN-------------------QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAY  234 (284)
Q Consensus       175 iilv~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  234 (284)
                      +|+|||+++++||+++..|++++....                   ...+| ||||||+||.+... ............+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~-~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE-SSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc-cchHHHhhHhhhH
Confidence            999999999999999999999997642                   22345 79999999732100 0011113345577


Q ss_pred             HHHcCCcEEEEcCCCCc
Q 023316          235 AKAMKATLFFSSATHNI  251 (284)
Q Consensus       235 a~~~~~~~~~~Sa~~~~  251 (284)
                      |++.+++.++.++.+..
T Consensus       160 a~~~~~~~i~~~c~~~~  176 (202)
T cd04102         160 AEQGNAEEINLNCTNGR  176 (202)
T ss_pred             HHhcCCceEEEecCCcc
Confidence            89999999998887544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00154 Rab Rab family

Probab=99.96  E-value=1.1e-27  Score=191.86  Aligned_cols=156  Identities=26%  Similarity=0.479  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+++|.++||||||++++.+.++. ...+|.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988 44678899999899999888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |++++++++.+..|+..+..... ..|.++++||+|+.    . ......++.+.++...+++++++||+++.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  155 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE----D-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQ  155 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc----c-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999999988874 44447999999962    1 122336778888888899999999999999999999


Q ss_pred             HHH
Q 023316          259 FIM  261 (284)
Q Consensus       259 ~l~  261 (284)
                      ++.
T Consensus       156 ~i~  158 (159)
T cd00154         156 SLA  158 (159)
T ss_pred             HHh
Confidence            986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=1.9e-27  Score=199.83  Aligned_cols=164  Identities=15%  Similarity=0.211  Sum_probs=132.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      ||+++|++|||||||+++|+++++...+.++..++..+.+.+++..+.+++||++|++.|..++..+++++|++|+|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            79999999999999999999999885554333356667788888889999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCCcCHHHHHH
Q 023316          182 TSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      +++++|+.+..|+..+.....  ..|.|+|+||+|+...   . .....++..+.+. ..+++++++||++|.|++++|+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~---~-~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE---E-RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc---c-ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHH
Confidence            999999999999998887643  3455899999996321   1 1222333333333 4568899999999999999999


Q ss_pred             HHHHHHhCCcc
Q 023316          259 FIMAKLFNLPW  269 (284)
Q Consensus       259 ~l~~~i~~~~~  269 (284)
                      ++++.+.-.++
T Consensus       157 ~l~~~~~~~~~  167 (198)
T cd04147         157 ELLRQANLPYN  167 (198)
T ss_pred             HHHHHhhcccc
Confidence            99998765544

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=3.9e-28  Score=201.55  Aligned_cols=167  Identities=16%  Similarity=0.170  Sum_probs=133.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||++++..+++....+|.|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988866788888877666655 44678899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCCC
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATHN  250 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~Sa~~~  250 (284)
                      ||+++.++++.+..|+.++.+..  ...|.++|+||+|+.+    .   ...++...+..      ..+++++++||++|
T Consensus        83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  155 (183)
T cd04152          83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN----A---LSVSEVEKLLALHELSASTPWHVQPACAIIG  155 (183)
T ss_pred             EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc----c---CCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence            99999999999999998887653  2345589999999621    1   11223333332      12356889999999


Q ss_pred             cCHHHHHHHHHHHHhCCcccccc
Q 023316          251 INVNKIFKFIMAKLFNLPWTVKR  273 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~~~~~~~~  273 (284)
                      +|++++|+++++.+.+.....+.
T Consensus       156 ~gi~~l~~~l~~~l~~~~~~~~~  178 (183)
T cd04152         156 EGLQEGLEKLYEMILKRRKMLRQ  178 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999998766554443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=5.6e-28  Score=200.34  Aligned_cols=154  Identities=18%  Similarity=0.221  Sum_probs=121.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|+++||||||++++..+++....||+|.++.  .+..  ..+.+++||++|+++++.++..||+++|++|+||
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~   92 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999998888766678887754  3433  3577999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC--------cEEEEcCCC
Q 023316          180 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--------TLFFSSATH  249 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~Sa~~  249 (284)
                      |++++++++++..|+..+...  ..+.|.+||+||+|+...    .   ..+   ++.+..++        .++++||++
T Consensus        93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~----~---~~~---~~~~~l~l~~~~~~~~~~~~~Sa~~  162 (181)
T PLN00223         93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M---NAA---EITDKLGLHSLRQRHWYIQSTCATS  162 (181)
T ss_pred             eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC----C---CHH---HHHHHhCccccCCCceEEEeccCCC
Confidence            999999999988887776432  234455799999996321    1   122   22333332        355799999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023316          250 NINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~  267 (284)
                      |+||.++|++|+..+.++
T Consensus       163 g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        163 GEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCCHHHHHHHHHHHHhhc
Confidence            999999999999887654

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=2.2e-28  Score=199.49  Aligned_cols=152  Identities=13%  Similarity=0.100  Sum_probs=123.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      |+++|++|||||||+++|+++.+. ...+|+|.+.    ..+++..+.+++|||+|+++|..++..+++++|++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            799999999999999999998877 5556778653    23455668899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch---HHHHHHHHHHcCCcEEEEcCCC------CcC
Q 023316          182 TSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI---ATQARAYAKAMKATLFFSSATH------NIN  252 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~Sa~~------~~~  252 (284)
                      +++.+|.+++.|+.++.....+.|.++|+||+|+.    .......   ..++..++++.++.++++||++      ++|
T Consensus        78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~  153 (164)
T cd04162          78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP----AARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA  153 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc----CCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence            99999999999999887655555558999999963    2211110   1235667777889999988888      999


Q ss_pred             HHHHHHHHHH
Q 023316          253 VNKIFKFIMA  262 (284)
Q Consensus       253 v~~lf~~l~~  262 (284)
                      |+++|+.++.
T Consensus       154 v~~~~~~~~~  163 (164)
T cd04162         154 VKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHhc
Confidence            9999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00876 Ras Ras family

Probab=99.95  E-value=3.7e-27  Score=189.97  Aligned_cols=157  Identities=20%  Similarity=0.354  Sum_probs=134.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      ||+++|++|||||||++++++..+...+ ++++ +...+.+.+++..+.+++||++|++.+..++..+++++|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            7999999999999999999998877444 4555 6667777888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ++++++++++..|+..+.....  ..|.++|+||+|+.    . ......+++..+++..+++++++||+++.|++++|+
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~  154 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE----N-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFK  154 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc----c-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Confidence            9999999999999998887755  44447999999962    2 123346778888888889999999999999999999


Q ss_pred             HHHHHH
Q 023316          259 FIMAKL  264 (284)
Q Consensus       259 ~l~~~i  264 (284)
                      ++++.+
T Consensus       155 ~l~~~i  160 (160)
T cd00876         155 LLVREI  160 (160)
T ss_pred             HHHhhC
Confidence            998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=8.8e-28  Score=199.33  Aligned_cols=158  Identities=16%  Similarity=0.197  Sum_probs=121.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||++++..+++....+|++.++.  .+..  ..+.+++|||+|+++++.++..|++++|++|+||
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~   92 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV   92 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988888766678887654  3333  4578999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCH
Q 023316          180 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINV  253 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~Sa~~~~~v  253 (284)
                      |++++++|+++..|+..+...  ..+.|.+||+||.|+.    +...  ..+....+    ++...+.++++||++|.|+
T Consensus        93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~----~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv  166 (182)
T PTZ00133         93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP----NAMS--TTEVTEKLGLHSVRQRNWYIQGCCATTAQGL  166 (182)
T ss_pred             eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC----CCCC--HHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence            999999999998877776432  2234457999999962    2111  11111111    1222345678999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 023316          254 NKIFKFIMAKLFNL  267 (284)
Q Consensus       254 ~~lf~~l~~~i~~~  267 (284)
                      +++|+++.+.+..+
T Consensus       167 ~e~~~~l~~~i~~~  180 (182)
T PTZ00133        167 YEGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.95  E-value=7.3e-27  Score=192.87  Aligned_cols=167  Identities=19%  Similarity=0.253  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .||+++|++|||||||++++.+..+.. ..++++..+ ...+.+++..+.+++|||+|+++|..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            589999999999999999999998874 455665444 466777888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |+++.++|+.+..|+..+.+..  .+.|.|+|+||+|+.    .. .....++...+++.++++++++||+++.|+.++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  155 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH----TQ-RQVSTEEGKELAESWGAAFLESSARENENVEEAF  155 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh----hc-CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999988887653  234558999999962    21 1122455677888888999999999999999999


Q ss_pred             HHHHHHHhCCcccccc
Q 023316          258 KFIMAKLFNLPWTVKR  273 (284)
Q Consensus       258 ~~l~~~i~~~~~~~~~  273 (284)
                      .++.+.+...+.....
T Consensus       156 ~~l~~~~~~~~~~~~~  171 (180)
T cd04137         156 ELLIEEIEKVENPLDP  171 (180)
T ss_pred             HHHHHHHHHhcCCCCC
Confidence            9999988766544433

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04154 Arl2 Arl2 subfamily

Probab=99.95  E-value=5.9e-27  Score=192.49  Aligned_cols=153  Identities=20%  Similarity=0.223  Sum_probs=121.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||++++.+..+....+|.|...  ..+.++  .+.+++|||+|++.++.++..+++++|++++|
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV   88 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            46899999999999999999999886655566777544  345555  36789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCc
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNI  251 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~~~Sa~~~~  251 (284)
                      ||++++.+|+++..|+..+...  ..+.|.++|+||+|+.+    ..   ..++...+.+     ..+++++++||++|.
T Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG----AL---SEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc----CC---CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            9999999999998888887543  23445589999999632    11   2333444432     346789999999999


Q ss_pred             CHHHHHHHHHH
Q 023316          252 NVNKIFKFIMA  262 (284)
Q Consensus       252 ~v~~lf~~l~~  262 (284)
                      |++++|++++.
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=7e-29  Score=196.83  Aligned_cols=168  Identities=18%  Similarity=0.328  Sum_probs=151.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+|++++|..+|||||++++|+.+-|. ++..|+|.++....+.+++..+.+.+|||+||++|..+...||++|.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            34699999999999999999999999999 44559999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      +||+.+|+.||+.+..|++++.......|-++|-||+||.    + ...+...+.+.+++..+..++.+|++...||..+
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv----e-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~v  172 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV----E-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV  172 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh----H-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence            9999999999999999999999888777779999999973    1 1334478889999999999999999999999999


Q ss_pred             HHHHHHHHhCCccc
Q 023316          257 FKFIMAKLFNLPWT  270 (284)
Q Consensus       257 f~~l~~~i~~~~~~  270 (284)
                      |..++..+.++..+
T Consensus       173 F~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  173 FAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988766543

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.94  E-value=6.2e-27  Score=189.35  Aligned_cols=155  Identities=17%  Similarity=0.244  Sum_probs=119.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      ||+++|++|||||||+++|.+.++....+|.+.++.  .+..+ ..+.+.+|||+|++.+..++..+++++|++|+|||+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999988766677776543  33333 457899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHH--HHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          182 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQ--ARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      +++.++..+..|+.++.+..  .+.|.++|+||+|+....+   .......  ...++...+++++++||++|+|++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            99999999998888876532  3445589999999631111   1111111  122333345679999999999999999


Q ss_pred             HHHHH
Q 023316          258 KFIMA  262 (284)
Q Consensus       258 ~~l~~  262 (284)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=202.93  Aligned_cols=141  Identities=23%  Similarity=0.311  Sum_probs=118.2

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC-------------eEEEEEEEeCCCCcCCc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-------------ARIAFSIWDVGGDSRSF  162 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~-------------~~~~l~l~Dt~G~e~~~  162 (284)
                      ....+||+|+|+.|||||||+++|+++.|. ...+|+|.++..+.+.+++             ..+.++||||+|+++|.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            445799999999999999999999999998 5556999998888777753             56889999999999999


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-------------CCceEEEEeCCCCCCCCCCCc-cc---
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-------------TAIPILIGTKFDDFVRLPPDL-QW---  225 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~-------------~~~~Ilv~nK~Dl~~~~~~~~-~~---  225 (284)
                      .++..||++++++|+|||+++++||+++..|++++.....             ..++||||||+||..   ... +.   
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~---~~~~r~~s~  174 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP---KEGTRGSSG  174 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc---ccccccccc
Confidence            9999999999999999999999999999999999987631             234479999999732   111 11   


Q ss_pred             chHHHHHHHHHHcCC
Q 023316          226 TIATQARAYAKAMKA  240 (284)
Q Consensus       226 ~~~~~~~~~a~~~~~  240 (284)
                      +..+++++||++.|+
T Consensus       175 ~~~e~a~~~A~~~g~  189 (334)
T PLN00023        175 NLVDAARQWVEKQGL  189 (334)
T ss_pred             ccHHHHHHHHHHcCC
Confidence            247899999999884

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.94  E-value=3.2e-26  Score=188.42  Aligned_cols=153  Identities=17%  Similarity=0.214  Sum_probs=120.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|+|||||++++..+++....+|.+.++.  .+.++  .+.+.+|||+|++.+...+..+++++|++|+||
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~   90 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI   90 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence            57999999999999999999999888776778887654  34444  477899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINV  253 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~Sa~~~~~v  253 (284)
                      |+++++++.....|+..+.+..  .+.|.++++||+|+.+..      ...+....+.    +..+++++++||++|.|+
T Consensus        91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi  164 (174)
T cd04153          91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TPAEISESLGLTSIRDHTWHIQGCCALTGEGL  164 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CHHHHHHHhCcccccCCceEEEecccCCCCCH
Confidence            9999999998888777775442  234558999999963211      1111122222    334567999999999999


Q ss_pred             HHHHHHHHH
Q 023316          254 NKIFKFIMA  262 (284)
Q Consensus       254 ~~lf~~l~~  262 (284)
                      +++|++|.+
T Consensus       165 ~e~~~~l~~  173 (174)
T cd04153         165 PEGLDWIAS  173 (174)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.94  E-value=2.2e-26  Score=186.29  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCC-C-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +|+++|++|||||||+++|.+..+ . ...+|+|....  .+.  ...+.+++|||+|++++..++..+++++|++|+||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999999864 3 44567775543  233  33577899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH--HcCCcEEEEcCCCCcCH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--AMKATLFFSSATHNINV  253 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~Sa~~~~~v  253 (284)
                      |++++.++.....|+..+.+..    ...|.++|+||+|+..    ........+...+..  ...++++++||++|.|+
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~----~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv  152 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD----ALTAVKITQLLGLENIKDKPWHIFASNALTGEGL  152 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC----CCCHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence            9999999999888988876531    2344479999999632    111111111111111  12346899999999999


Q ss_pred             HHHHHHHHH
Q 023316          254 NKIFKFIMA  262 (284)
Q Consensus       254 ~~lf~~l~~  262 (284)
                      +++|++|.+
T Consensus       153 ~~~~~~l~~  161 (162)
T cd04157         153 DEGVQWLQA  161 (162)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=1.9e-26  Score=186.50  Aligned_cols=151  Identities=20%  Similarity=0.262  Sum_probs=114.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      ||+++|+++||||||++++..+.+....+|++.++.  .+..  ..+.+++|||+|++.+..++..+++.+|++|+|||+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            799999999999999999988887766677777654  3333  457789999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHh-HC-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCHHH
Q 023316          182 TSRCTLNSIVGWYSEARK-WN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~-~~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +++.++.....|+..+.+ .. .+.|.++|+||+|+.+.    .  ...+....+    ....+.+++++||++|.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  150 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA----L--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE  150 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC----C--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHH
Confidence            999988877766655433 22 34455899999996311    1  111111112    112245799999999999999


Q ss_pred             HHHHHHH
Q 023316          256 IFKFIMA  262 (284)
Q Consensus       256 lf~~l~~  262 (284)
                      +|+++++
T Consensus       151 l~~~l~~  157 (158)
T cd04151         151 GMDWLVN  157 (158)
T ss_pred             HHHHHhc
Confidence            9999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=2.1e-25  Score=183.99  Aligned_cols=143  Identities=22%  Similarity=0.337  Sum_probs=122.7

Q ss_pred             CCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 023316          123 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  201 (284)
Q Consensus       123 ~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~  201 (284)
                      +.|. .+.+|+|.++..+.+.+++..+.+.||||+|++++..++..|++++|++|+|||+++++||+++..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            4566 456799999999999999999999999999999999999999999999999999999999999999999997765


Q ss_pred             CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023316          202 QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       202 ~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~  270 (284)
                      ....| ||||||+||.    .. ..+..+++..+++.+++.|+++||++|.||+++|++++..+.+.+..
T Consensus        83 ~~~~piilVgNK~DL~----~~-~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 GKDVIIALVGNKTDLG----DL-RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCCeEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            43344 7999999973    11 22346678888999999999999999999999999999999776544

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.93  E-value=2.2e-25  Score=179.96  Aligned_cols=150  Identities=17%  Similarity=0.218  Sum_probs=118.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      ||+++|.+|||||||++++++.++....+|.+.+..  .+.++  .+.+.+||++|++.+...+..+++++|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            799999999999999999999986666667776654  34444  46788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCCCCcCHH
Q 023316          182 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      ++++++.....|+..+....  ...|.++++||+|+.    ...   ..++....     +....++++++||++|.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  149 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP----GAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLD  149 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc----ccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHH
Confidence            99999999998888776642  244557999999962    111   11122222     12245689999999999999


Q ss_pred             HHHHHHHH
Q 023316          255 KIFKFIMA  262 (284)
Q Consensus       255 ~lf~~l~~  262 (284)
                      ++|++|..
T Consensus       150 ~~~~~l~~  157 (158)
T cd00878         150 EGLDWLLQ  157 (158)
T ss_pred             HHHHHHhh
Confidence            99999874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.93  E-value=4.9e-25  Score=183.58  Aligned_cols=154  Identities=15%  Similarity=0.156  Sum_probs=121.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ...||+++|++|||||||++++.++++....+|.+...  ..+.+++  +.+.+||++|++.+..++..++++++++++|
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            36899999999999999999999988765556666543  3555665  5688999999999988899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----------------cCC
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----------------MKA  240 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~----------------~~~  240 (284)
                      +|+++.++|+....|+..+.+..  .+.|.++++||+|+..       ....++.+.+...                ..+
T Consensus        94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (190)
T cd00879          94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSEEELRQALGLYGTTTGKGVSLKVSGIRPI  166 (190)
T ss_pred             EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCHHHHHHHhCcccccccccccccccCceeE
Confidence            99999999998888888876542  2345589999999621       1123444444432                235


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHH
Q 023316          241 TLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       241 ~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      ++++|||++|+|++++|+++++.
T Consensus       167 ~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         167 EVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEEeEecCCCChHHHHHHHHhh
Confidence            68999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.93  E-value=2.7e-25  Score=181.78  Aligned_cols=152  Identities=15%  Similarity=0.164  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +|+++|++|||||||++++.+. +. ...+|.|.+.  ..+.++  .+.+++||++|+++++.++..|++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999977 54 5566878653  345554  4678899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch---HHHHHHHHHHcC--CcEEEEcCCCC---
Q 023316          181 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI---ATQARAYAKAMK--ATLFFSSATHN---  250 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~---~~~~~~~a~~~~--~~~~~~Sa~~~---  250 (284)
                      ++++.+|+++..|+..+.+..  ...|.++|+||+|+.    .......   ...+..++++.+  +.+++|||++|   
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~----~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~  151 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK----NALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK  151 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc----CCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence            999999999999999987653  234557999999963    2221111   111233443333  46777999998   


Q ss_pred             ---cCHHHHHHHHHH
Q 023316          251 ---INVNKIFKFIMA  262 (284)
Q Consensus       251 ---~~v~~lf~~l~~  262 (284)
                         .|+.+.|+||..
T Consensus       152 ~~~~g~~~~~~wl~~  166 (167)
T cd04161         152 KIDPSIVEGLRWLLA  166 (167)
T ss_pred             ccccCHHHHHHHHhc
Confidence               899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=9.8e-25  Score=196.48  Aligned_cols=205  Identities=16%  Similarity=0.142  Sum_probs=143.2

Q ss_pred             HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceee----EEEEEcCCCCChHHHHH
Q 023316           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFVV  118 (284)
Q Consensus        43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----KI~llG~~~vGKSsLl~  118 (284)
                      .+++++|.+|.+|.++.+..++....     |.....|...         +...-..++    .|.|||.||||||||++
T Consensus       111 ~~~~~~a~gg~gg~gn~~f~~~~~~~-----p~~~~~g~~g---------~~~~~~lelk~~adVglVG~PNaGKSTLln  176 (335)
T PRK12299        111 GQRFLVAKGGKGGLGNAHFKSSTNRA-----PRYATPGEPG---------EERWLRLELKLLADVGLVGLPNAGKSTLIS  176 (335)
T ss_pred             CcEEEEecCCCCcCCchhhccccCCC-----CccccCCCCC---------cEEEEEEEEcccCCEEEEcCCCCCHHHHHH
Confidence            57889999999999886655444332     2222222222         111111233    47799999999999999


Q ss_pred             HHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----Cccccccc---ccCCcEEEEEEeCCChhhHHHH
Q 023316          119 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKDAVAILFMFDLTSRCTLNSI  190 (284)
Q Consensus       119 ~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----~~~~~~~~---~~~ad~iilv~d~~~~~s~~~~  190 (284)
                      ++.+.+.. ..++.++.+.....+.+.+ ...+.+||++|..+    ...+...|   +..++++|+|+|+++.++++++
T Consensus       177 ~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~  255 (335)
T PRK12299        177 AVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDY  255 (335)
T ss_pred             HHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHH
Confidence            99987766 6666444444445555532 23477999999753    22344444   4579999999999998899999


Q ss_pred             HHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          191 VGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       191 ~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ..|.+++..+.+   ..|.|+|+||+|+.    +. .....+....+++..+.+++++||++++|++++|+++...+...
T Consensus       256 ~~~~~EL~~~~~~L~~kp~IIV~NKiDL~----~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        256 KTIRNELEKYSPELADKPRILVLNKIDLL----DE-EEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHhhhhcccCCeEEEEECcccC----Cc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence            999999988754   34558999999962    21 11123345555666778999999999999999999999887543

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.92  E-value=3.2e-25  Score=180.55  Aligned_cols=150  Identities=17%  Similarity=0.199  Sum_probs=114.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCC------C-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~  174 (284)
                      +|+++|++|||||||++++.+...      . ...+|.+.++.  .+.+++  ..+.+|||+|++.+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      1 23446666654  445554  678899999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-------cCCcEEEE
Q 023316          175 ILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------MKATLFFS  245 (284)
Q Consensus       175 iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~~~  245 (284)
                      +++|+|+++++++.....|+..+.+..  ...|.++++||+|+..    .   ...++...+.+.       .+++++++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD----A---LSVEEIKEVFQDKAEEIGRRDCLVLPV  149 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc----C---CCHHHHHHHhccccccccCCceEEEEe
Confidence            999999999999999988888876542  2345589999999621    1   112233333222       34689999


Q ss_pred             cCCCCcCHHHHHHHHHH
Q 023316          246 SATHNINVNKIFKFIMA  262 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~  262 (284)
                      ||++|.|++++|++|+.
T Consensus       150 Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         150 SALEGTGVREGIEWLVE  166 (167)
T ss_pred             eCCCCcCHHHHHHHHhc
Confidence            99999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=5e-24  Score=191.66  Aligned_cols=201  Identities=15%  Similarity=0.124  Sum_probs=141.5

Q ss_pred             HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCcee----eEEEEEcCCCCChHHHHH
Q 023316           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVS----LKISLLGDCQIGKTSFVV  118 (284)
Q Consensus        43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~KI~llG~~~vGKSsLl~  118 (284)
                      .+++++|.+|.+|.++.+..++....     |.....|....         ...-..+    ..|+|+|.+|||||||++
T Consensus       110 ~~~~~~a~gg~gg~gn~~f~~~~~~~-----p~~~~~g~~g~---------~~~~~lelk~~adV~lvG~pnaGKSTLl~  175 (329)
T TIGR02729       110 GQRFVVAKGGRGGLGNAHFKSSTNRA-----PRFATPGEPGE---------ERWLRLELKLLADVGLVGLPNAGKSTLIS  175 (329)
T ss_pred             CcEEEecCCCCCCCCcccccCccCCC-----CcccCCCCCCc---------EEEEEEEeeccccEEEEcCCCCCHHHHHH
Confidence            56889999999999886655544432     22222222221         1111122    358899999999999999


Q ss_pred             HHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----ccccccccc---CCcEEEEEEeCCCh---hhH
Q 023316          119 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPIACK---DAVAILFMFDLTSR---CTL  187 (284)
Q Consensus       119 ~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~~~~~~~~~---~ad~iilv~d~~~~---~s~  187 (284)
                      ++.+.+.. ..++.++.......+.+++ ...+.+|||+|..+.    ..+...|++   .++++|+|+|+++.   +++
T Consensus       176 ~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~  254 (329)
T TIGR02729       176 AVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI  254 (329)
T ss_pred             HHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH
Confidence            99988765 5666333444444555554 355789999998642    245555544   69999999999987   788


Q ss_pred             HHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          188 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       188 ~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +++..|.+++..+..   ..|.|||+||+|+.    +.  ....+..+.+++.++.+++++||++++|++++|+++...+
T Consensus       255 e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~----~~--~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       255 EDYEIIRNELKKYSPELAEKPRIVVLNKIDLL----DE--EELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHHHhhhhhccCCEEEEEeCccCC----Ch--HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            999999999887753   45558999999962    21  2234555667777788999999999999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=9.4e-24  Score=179.63  Aligned_cols=170  Identities=25%  Similarity=0.310  Sum_probs=132.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|.++.+.. ..+|++..+........+..+.+.+|||+|+++|+.++..|+.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            4899999999999999999999999995 445778788777777776689999999999999999999999999999999


Q ss_pred             EeCCC-hhhHHHHHHHHHHHHhHCCC-CceEEEEeCCCCCCCCCCCc-------ccchHHHHHHHHHH---cCCcEEEEc
Q 023316          179 FDLTS-RCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDL-------QWTIATQARAYAKA---MKATLFFSS  246 (284)
Q Consensus       179 ~d~~~-~~s~~~~~~~~~~l~~~~~~-~~~Ilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~a~~---~~~~~~~~S  246 (284)
                      ||.++ ..+++....|.+++...... .++++|+||+||........       ...........+..   ....++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 45566667999999888754 55589999999743321110       01111111222221   233489999


Q ss_pred             CC--CCcCHHHHHHHHHHHHhCCcc
Q 023316          247 AT--HNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       247 a~--~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      ++  ++.+|+++|..++..+.+...
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhh
Confidence            99  999999999999999875543

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.91  E-value=3.2e-24  Score=178.24  Aligned_cols=153  Identities=16%  Similarity=0.173  Sum_probs=117.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|.+|||||||++++.++.+....+|.+.+.  ..+.+++  +.+.+||++|++.++.++..+++++|++|+|+
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv   92 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV   92 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999987765455666543  3344444  66889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH------------cCCcEEEE
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------------MKATLFFS  245 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~------------~~~~~~~~  245 (284)
                      |+++++++.....|+.++.+..  ...|.++|+||+|+....       ..++..+....            ....++++
T Consensus        93 D~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-------~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~  165 (184)
T smart00178       93 DAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA-------SEDELRYALGLTNTTGSKGKVGVRPLEVFMC  165 (184)
T ss_pred             ECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC-------CHHHHHHHcCCCcccccccccCCceeEEEEe
Confidence            9999999999988888775432  344558999999963211       12222222110            13458899


Q ss_pred             cCCCCcCHHHHHHHHHHH
Q 023316          246 SATHNINVNKIFKFIMAK  263 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~  263 (284)
                      ||++|+|++++++||...
T Consensus       166 Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      166 SVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ecccCCChHHHHHHHHhh
Confidence            999999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.91  E-value=1.8e-23  Score=170.32  Aligned_cols=155  Identities=15%  Similarity=0.163  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc---------ccccC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP---------IACKD  171 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~---------~~~~~  171 (284)
                      +|+++|++|||||||+++|.+..+. ..++.+..+.....+..  ..+.+.+|||+|+........         .....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999999998875 33332222222223322  346788999999853211000         01123


Q ss_pred             CcEEEEEEeCCChhhH--HHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          172 AVAILFMFDLTSRCTL--NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       172 ad~iilv~d~~~~~s~--~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      +|++|+|+|+++..++  +....|++.+.+...+.|.|+|+||+|+.    ..  .... +..++++..+.+++++||++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~----~~--~~~~-~~~~~~~~~~~~~~~~Sa~~  152 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL----TF--EDLS-EIEEEEELEGEEVLKISTLT  152 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC----ch--hhHH-HHHHhhhhccCceEEEEecc
Confidence            6899999999987654  66678888887655455668999999962    11  1111 24556666678999999999


Q ss_pred             CcCHHHHHHHHHHHHh
Q 023316          250 NINVNKIFKFIMAKLF  265 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~  265 (284)
                      |.|++++|+++.+.++
T Consensus       153 ~~gi~~l~~~l~~~~~  168 (168)
T cd01897         153 EEGVDEVKNKACELLL  168 (168)
T ss_pred             cCCHHHHHHHHHHHhC
Confidence            9999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.91  E-value=6.4e-24  Score=170.19  Aligned_cols=151  Identities=18%  Similarity=0.327  Sum_probs=116.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      .|+++|++|||||||++++.+.++. ...+|++.++..  +..++  +.+.+||++|++.+..++..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3799999999999999999999988 666788877653  33443  779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +++.+++.....|+..+....  ...|.++|+||+|+.    ....  ..+....+    ....+++++++||++|.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  150 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP----GALS--VDELIEQMNLKSITDREVSCYSISCKEKTNID  150 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc----CCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence            999999988888877765432  234557999999962    1111  11111111    12234678999999999999


Q ss_pred             HHHHHHHH
Q 023316          255 KIFKFIMA  262 (284)
Q Consensus       255 ~lf~~l~~  262 (284)
                      ++|+++++
T Consensus       151 ~l~~~l~~  158 (159)
T cd04159         151 IVLDWLIK  158 (159)
T ss_pred             HHHHHHhh
Confidence            99999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.91  E-value=1.7e-23  Score=170.77  Aligned_cols=155  Identities=14%  Similarity=0.127  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----Ccccccccc---cCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAV  173 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----~~~~~~~~~---~~ad  173 (284)
                      .|+++|.+|||||||++++.+.+.. ...+.++.+.....+.+++. ..+.+|||+|+..    +..+...++   ..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999986654 33332223322233444443 4688999999743    233444444   4599


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCC
Q 023316          174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSAT  248 (284)
Q Consensus       174 ~iilv~d~~~~-~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~  248 (284)
                      ++++|+|++++ ++++++..|++.+.....   ..|.++|+||+|+.    +  .....+....+... .+.+++++||+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~~Sa~  154 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL----D--EEELFELLKELLKELWGKPVFPISAL  154 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC----C--chhhHHHHHHHHhhCCCCCEEEEecC
Confidence            99999999999 899999999999987643   34558999999962    1  11223444455555 37889999999


Q ss_pred             CCcCHHHHHHHHHHH
Q 023316          249 HNINVNKIFKFIMAK  263 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~  263 (284)
                      ++.|++++|+++.+.
T Consensus       155 ~~~gi~~l~~~i~~~  169 (170)
T cd01898         155 TGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01890 LepA LepA subfamily

Probab=99.91  E-value=1.7e-23  Score=172.36  Aligned_cols=153  Identities=13%  Similarity=0.202  Sum_probs=114.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC-------CCCcc-c------ccceeeeeEEEEE-----CCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE-------QERSL-Q------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~-------~~~~~-~------t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~e~~~  162 (284)
                      +|+++|+++||||||+++|++..       +...+ +      +.|.++....+.+     ++..+.+.+|||+|+++|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       21111 1      2244555444333     6678889999999999999


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC--
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--  240 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~--  240 (284)
                      .++..+++++|++|+|||+++..+++....|.....   ...+.|+|+||+|+.    ...   ..+...++++.+++  
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~----~~~---~~~~~~~~~~~~~~~~  151 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLP----SAD---PERVKQQIEDVLGLDP  151 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCC----cCC---HHHHHHHHHHHhCCCc
Confidence            999999999999999999999888777776754332   234558999999962    111   12334556666666  


Q ss_pred             -cEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          241 -TLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       241 -~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                       .++++||++|.|++++|+++...+
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhC
Confidence             489999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.91  E-value=3.7e-24  Score=169.97  Aligned_cols=134  Identities=17%  Similarity=0.137  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCc-----CCcccccccccCCcEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-----RSFDHVPIACKDAVAIL  176 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e-----~~~~~~~~~~~~ad~ii  176 (284)
                      ||+++|++|||||||+++|.+..+. ..+|.+.++.       +     .+|||+|+.     .+..+.. .++++|++|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999988763 2334444332       1     489999983     2444433 478999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++.++.. ..|.+.+     ..|.|+|+||+||.    +  .....+++.++++..+. +++++||++|.|+++
T Consensus        68 lv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  135 (142)
T TIGR02528        68 LVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLA----E--ADVDIERAKELLETAGAEPIFEISSVDEQGLEA  135 (142)
T ss_pred             EEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccC----C--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence            9999999998865 3555432     23558999999972    1  11234567777887776 799999999999999


Q ss_pred             HHHHHH
Q 023316          256 IFKFIM  261 (284)
Q Consensus       256 lf~~l~  261 (284)
                      +|+++.
T Consensus       136 l~~~l~  141 (142)
T TIGR02528       136 LVDYLN  141 (142)
T ss_pred             HHHHHh
Confidence            999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.91  E-value=3.8e-23  Score=170.46  Aligned_cols=156  Identities=20%  Similarity=0.299  Sum_probs=123.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ...+||+++|..|+|||||++++..++.....||.|.+..  .+.+++  +.+.+||.+|++.++.+|+.|++++|++|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence            4589999999999999999999998776677788887754  555565  557899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCC
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATH  249 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~Sa~~  249 (284)
                      |+|.++.+.+.+....+..+.... ....| ++++||.|+.    +...   .++......      ...+.++.|||.+
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~----~~~~---~~~i~~~l~l~~l~~~~~~~v~~~sa~~  160 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP----DAMS---EEEIKEYLGLEKLKNKRPWSVFSCSAKT  160 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST----TSST---HHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEecccccc----Ccch---hhHHHhhhhhhhcccCCceEEEeeeccC
Confidence            999999999999888777776542 23345 6899999953    2211   222222211      2345688899999


Q ss_pred             CcCHHHHHHHHHHHH
Q 023316          250 NINVNKIFKFIMAKL  264 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i  264 (284)
                      |+|+.+.|+||.+.|
T Consensus       161 g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  161 GEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcC
Confidence            999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.91  E-value=4.7e-23  Score=161.57  Aligned_cols=163  Identities=21%  Similarity=0.236  Sum_probs=132.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+++|.++|..|+||||++++|.+.......||.|.++  +++.+++  +++++||.+||...+..|+.||..+|++|+|
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~I--ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQI--KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCccceee--EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            48999999999999999999999988666777888665  4666665  6688999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      +|.+|+..+++...-++.+..-  -...+++|++||.|+...+..+. ....-+..+++++..++++.|||.+|+++.+-
T Consensus        91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~-i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g  169 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEE-ISKALDLEELAKSHHWRLVKCSAVTGEDLLEG  169 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHH-HHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence            9999999998887766666442  22457789999999643332211 01134466777888999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      ++|+...+..
T Consensus       170 idWL~~~l~~  179 (185)
T KOG0073|consen  170 IDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHH
Confidence            9999998876

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.90  E-value=1.3e-22  Score=161.74  Aligned_cols=155  Identities=20%  Similarity=0.250  Sum_probs=125.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|.+|+|||||++++.+..+. ...++++.++....+..++..+.+.+||++|++.+..++..+++.+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            379999999999999999999999966 5566888888877788888778899999999999999999999999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          179 FDLTSR-CTLNSIV-GWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~-~s~~~~~-~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|.... .++.... .|...+..... ..|.++++||+|+.   ..   .........+......+++++||++|.|+.+
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~---~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~  154 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLR---DA---KLKTHVAFLFAKLNGEPIIPLSAETGKNIDS  154 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCC---cc---hhhHHHHHHHhhccCCceEEeecCCCCCHHH
Confidence            999888 7777765 78777776655 44558999999962   11   1223333344444466899999999999999


Q ss_pred             HHHHH
Q 023316          256 IFKFI  260 (284)
Q Consensus       256 lf~~l  260 (284)
                      +|+++
T Consensus       155 ~~~~l  159 (161)
T TIGR00231       155 AFKIV  159 (161)
T ss_pred             HHHHh
Confidence            99986

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=99.90  E-value=6.7e-23  Score=165.85  Aligned_cols=152  Identities=15%  Similarity=0.129  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC---CCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE---QER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~---~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      -|+++|++|||||||+++|++..   +.. ..++++.+.....+.+.+ ...+.+|||+|+++|......+++++|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            58999999999999999999643   332 223444444444555542 3468899999999987766778899999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH---cCCcEEEEcCCCCc
Q 023316          178 MFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA---MKATLFFSSATHNI  251 (284)
Q Consensus       178 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~---~~~~~~~~Sa~~~~  251 (284)
                      |+|+++   .++++.+.    .+... ...|+|+++||+|+.   .........++..++.+.   .+.+++++||+++.
T Consensus        81 V~d~~~~~~~~~~~~~~----~~~~~-~~~~~ilv~NK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171          81 VVAADEGIMPQTREHLE----ILELL-GIKRGLVVLTKADLV---DEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EEECCCCccHhHHHHHH----HHHHh-CCCcEEEEEECcccc---CHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            999987   34433322    22222 223558999999962   111111223344444444   46799999999999


Q ss_pred             CHHHHHHHHHH
Q 023316          252 NVNKIFKFIMA  262 (284)
Q Consensus       252 ~v~~lf~~l~~  262 (284)
                      |++++|+.+..
T Consensus       153 ~v~~l~~~l~~  163 (164)
T cd04171         153 GIEELKEYLDE  163 (164)
T ss_pred             CHHHHHHHHhh
Confidence            99999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04155 Arl3 Arl3 subfamily

Probab=99.90  E-value=5.9e-23  Score=168.22  Aligned_cols=149  Identities=16%  Similarity=0.226  Sum_probs=114.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||++++.+..+....+|.|.++.  .+..++  ..+.+||++|+..+...+..+++.+|++++|+
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   89 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI   89 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence            68999999999999999999999877655567775543  444555  56789999999998888888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC--------cEEEEcCCC
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--------TLFFSSATH  249 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~Sa~~  249 (284)
                      |+++..++.....|+..+.+..  ...|.++++||+|+.    ...  .    ..++.+..++        +++++||++
T Consensus        90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----~~~--~----~~~i~~~l~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04155          90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA----TAA--P----AEEIAEALNLHDLRDRTWHIQACSAKT  159 (173)
T ss_pred             eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc----cCC--C----HHHHHHHcCCcccCCCeEEEEEeECCC
Confidence            9999999988887777665432  234447999999962    111  1    1222233332        467899999


Q ss_pred             CcCHHHHHHHHHH
Q 023316          250 NINVNKIFKFIMA  262 (284)
Q Consensus       250 ~~~v~~lf~~l~~  262 (284)
                      |+|++++|+|+++
T Consensus       160 ~~gi~~~~~~l~~  172 (173)
T cd04155         160 GEGLQEGMNWVCK  172 (173)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=1e-22  Score=187.86  Aligned_cols=203  Identities=13%  Similarity=0.150  Sum_probs=142.2

Q ss_pred             HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCcee----eEEEEEcCCCCChHHHHH
Q 023316           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVS----LKISLLGDCQIGKTSFVV  118 (284)
Q Consensus        43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~KI~llG~~~vGKSsLl~  118 (284)
                      .+++++|.+|.+|.++.+..++....     |..+..|....         ...-..+    ..|+|+|.+|||||||++
T Consensus       111 ~~~~~va~GG~gG~gn~~F~~s~~~~-----p~~~~~G~~ge---------~~~~~lelk~~adVglVG~pNaGKSTLLn  176 (424)
T PRK12297        111 GQEVVVAKGGRGGRGNAHFATSTNQA-----PRIAENGEPGE---------ERELRLELKLLADVGLVGFPNVGKSTLLS  176 (424)
T ss_pred             CcEEEEECCCCCCcCchhhcCCCCCC-----CCcCCCCCCCe---------EeEEEEeecccCcEEEEcCCCCCHHHHHH
Confidence            67889999999999886655444332     23333332221         1111112    358899999999999999


Q ss_pred             HHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----Ccccccccc---cCCcEEEEEEeCCCh---hhH
Q 023316          119 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSR---CTL  187 (284)
Q Consensus       119 ~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----~~~~~~~~~---~~ad~iilv~d~~~~---~s~  187 (284)
                      ++++.+.. ..++.++.+.....+.+++ ...+.+||++|...    ...+...|+   ..++++|+|+|+++.   +++
T Consensus       177 ~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~  255 (424)
T PRK12297        177 VVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI  255 (424)
T ss_pred             HHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH
Confidence            99998766 5666333333333444441 24578999999753    234555554   459999999999864   788


Q ss_pred             HHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          188 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       188 ~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +++..|.+++..+.+   ..|.|||+||+||    +..     .+....+++.++.+++++||++++|++++++++...+
T Consensus       256 e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL----~~~-----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l  326 (424)
T PRK12297        256 EDYEKINKELKLYNPRLLERPQIVVANKMDL----PEA-----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELL  326 (424)
T ss_pred             HHHHHHHHHHhhhchhccCCcEEEEEeCCCC----cCC-----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence            888999999988754   3455899999996    211     2345666777778899999999999999999999888


Q ss_pred             hCCcc
Q 023316          265 FNLPW  269 (284)
Q Consensus       265 ~~~~~  269 (284)
                      .+.+.
T Consensus       327 ~~~~~  331 (424)
T PRK12297        327 EETPE  331 (424)
T ss_pred             HhCcc
Confidence            76554

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.3e-22  Score=191.53  Aligned_cols=254  Identities=15%  Similarity=0.113  Sum_probs=159.7

Q ss_pred             hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc------ccccccCCCCCCCCCcccc
Q 023316            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR------YQKLTRRSSSESSPAPDTM   77 (284)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~   77 (284)
                      +..++..++.+++..++.+|.+.+......-+.+.++...-.++++-++......      +..+...     .+-+...
T Consensus       107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~-----~~~~iSA  181 (472)
T PRK03003        107 VAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLG-----EPHPVSA  181 (472)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCC-----CeEEEEc
Confidence            4455666778888899999999887666666666776655566666664432111      1111110     0001111


Q ss_pred             ccc--cccc----ccccCC-CCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEE
Q 023316           78 EAG--LVEL----SRTFSS-GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARI  148 (284)
Q Consensus        78 ~~~--~~~~----~~~~~~-~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~  148 (284)
                      ..|  ....    ...... ..........+||+++|.+|||||||+++|++.++.  ...++++.+.....+.+++..+
T Consensus       182 ~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~  261 (472)
T PRK03003        182 LHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW  261 (472)
T ss_pred             CCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE
Confidence            111  0000    000000 001111123589999999999999999999998764  6667777888778888888664


Q ss_pred             EEEEEeCCCCcCC----------cccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCC
Q 023316          149 AFSIWDVGGDSRS----------FDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV  217 (284)
Q Consensus       149 ~l~l~Dt~G~e~~----------~~~~-~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~  217 (284)
                        .+|||+|..+.          ..+. ..+++++|++|+|||+++..+++++. |+..+..  ...+.|+|+||+||. 
T Consensus       262 --~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~-  335 (472)
T PRK03003        262 --RFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLV-  335 (472)
T ss_pred             --EEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccC-
Confidence              69999997432          2221 23578999999999999999888764 4454443  244558999999972 


Q ss_pred             CCCCCcccchHHHHH-HHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023316          218 RLPPDLQWTIATQAR-AYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       218 ~~~~~~~~~~~~~~~-~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~  270 (284)
                        .........++.. .++....++++++||++|.||+++|+.+.+.+.+....
T Consensus       336 --~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~  387 (472)
T PRK03003        336 --DEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTR  387 (472)
T ss_pred             --ChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence              2121112222222 23333457899999999999999999999877544433

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=7.4e-23  Score=164.36  Aligned_cols=163  Identities=17%  Similarity=0.203  Sum_probs=129.0

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+.+|+++|-.++||||+++++..+++....||+|.+..  ++.+.  ++.|.+||.+||++++.+|++||++.+++|
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE--~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE--TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee--EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            34589999999999999999999999999877999998765  44444  578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccchHHHHHHH--HHHcCCcEEEEcCCCCcC
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAY--AKAMKATLFFSSATHNIN  252 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~Sa~~~~~  252 (284)
                      +|.|.+|++-+.+.++-+..+..... ...| ++.+||.|+.+.++..    ...+...+  .+.....+..|+|.+|+|
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~----ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAA----EITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHH----HHHhHhhhhccCCCCcEEeecccccccc
Confidence            99999999999998877777666543 3444 6899999965444421    11111111  222345677799999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 023316          253 VNKIFKFIMAKLFNL  267 (284)
Q Consensus       253 v~~lf~~l~~~i~~~  267 (284)
                      +.|.++|+...+...
T Consensus       166 L~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887543

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=1.5e-21  Score=176.67  Aligned_cols=169  Identities=16%  Similarity=0.271  Sum_probs=124.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-Cccccc-------c
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVP-------I  167 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~~~-------~  167 (284)
                      ...+||+++|++|||||||+|+|++.++.  ...+.++.+.....+..++.  .+.+|||+|+.. +..+..       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            45689999999999999999999998875  23333334555556666665  468999999954 333322       2


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEE
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFF  244 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~  244 (284)
                      ++.++|++|+|+|..+  +|.+.. .|++.+...  ..++|+|+||+|+.    ..    ...++.+++...+  ..+++
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~----~~----~~~~~~~~l~~~~~~~~i~~  195 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIE----SK----YLNDIKAFLTENHPDSLLFP  195 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCc----cc----cHHHHHHHHHhcCCCcEEEE
Confidence            4679999999999654  455554 466666543  35678999999962    11    1334555555443  57999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023316          245 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP  280 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  280 (284)
                      +||++|.|++++|+++...+...+|.......++.|
T Consensus       196 iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~  231 (339)
T PRK15494        196 ISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLP  231 (339)
T ss_pred             EeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999998888777665

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=8.7e-23  Score=163.72  Aligned_cols=165  Identities=22%  Similarity=0.337  Sum_probs=142.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+|++++|+.|.|||+++++....+|+ ...+|+|++...-...-+...+.|..|||+|+|.+..+..-||-.+.+.|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            34799999999999999999999999999 55569999988766655555799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ++||++.+-++.++..|...+.+.+.+.|++++|||.|.    .   .+.+....-.+-+..++.|+++||+++.|.+.-
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi----~---~r~~k~k~v~~~rkknl~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDI----K---ARKVKAKPVSFHRKKNLQYYEISAKSNYNFERP  160 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceec----c---ccccccccceeeecccceeEEeecccccccccc
Confidence            999999999999999999999998888777899999993    2   112234445566677899999999999999999


Q ss_pred             HHHHHHHHhCCcc
Q 023316          257 FKFIMAKLFNLPW  269 (284)
Q Consensus       257 f~~l~~~i~~~~~  269 (284)
                      |.|+++.+...+.
T Consensus       161 Fl~LarKl~G~p~  173 (216)
T KOG0096|consen  161 FLWLARKLTGDPS  173 (216)
T ss_pred             hHHHhhhhcCCCC
Confidence            9999999987663

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=7.5e-22  Score=184.45  Aligned_cols=208  Identities=14%  Similarity=0.084  Sum_probs=140.7

Q ss_pred             HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhc
Q 023316           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus        43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+++++|.+|.+|.++.+..++...     +|.....|...........     =....+|+|||.||||||||++++.+
T Consensus       112 g~~~~~a~GG~GG~Gn~~f~~~~~~-----~p~~~~~G~~Ge~~~~~le-----Lk~~adV~LVG~PNAGKSTLln~Ls~  181 (500)
T PRK12296        112 GTRFVAAAGGRGGLGNAALASKARK-----APGFALLGEPGEERDLVLE-----LKSVADVGLVGFPSAGKSSLISALSA  181 (500)
T ss_pred             CCEEEEEccCCCcCCCcccCCccCC-----CCccccCCCCCceEEEEEE-----ecccceEEEEEcCCCCHHHHHHHHhc
Confidence            6788999999999998665554443     2333333332211110000     00124688999999999999999998


Q ss_pred             CCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----cccccc---cccCCcEEEEEEeCCC----hhhHHHH
Q 023316          123 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPI---ACKDAVAILFMFDLTS----RCTLNSI  190 (284)
Q Consensus       123 ~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~~~~~~---~~~~ad~iilv~d~~~----~~s~~~~  190 (284)
                      .+.. ..++.++.+.....+.+.+  ..|.+|||+|....    ..+...   ++..++++|+|+|+++    ++.++++
T Consensus       182 akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~  259 (500)
T PRK12296        182 AKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDI  259 (500)
T ss_pred             CCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhH
Confidence            8766 6677444555555666665  46889999997432    222222   3568999999999985    4567777


Q ss_pred             HHHHHHHHhHCC------------CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          191 VGWYSEARKWNQ------------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       191 ~~~~~~l~~~~~------------~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ..|..+|..+..            ..|.|||+||+|+    ++.  ....+.........+++++++||++++|+++++.
T Consensus       260 ~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL----~da--~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~  333 (500)
T PRK12296        260 DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV----PDA--RELAEFVRPELEARGWPVFEVSAASREGLRELSF  333 (500)
T ss_pred             HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc----hhh--HHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            778777776642            3455899999996    222  1122233333445688999999999999999999


Q ss_pred             HHHHHHhCCc
Q 023316          259 FIMAKLFNLP  268 (284)
Q Consensus       259 ~l~~~i~~~~  268 (284)
                      ++...+...+
T Consensus       334 ~L~ell~~~r  343 (500)
T PRK12296        334 ALAELVEEAR  343 (500)
T ss_pred             HHHHHHHhhh
Confidence            9998886544

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=7.2e-22  Score=181.24  Aligned_cols=217  Identities=16%  Similarity=0.142  Sum_probs=147.0

Q ss_pred             HHHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceee----EEEEEcCCCCChHHHH
Q 023316           42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV  117 (284)
Q Consensus        42 ~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----KI~llG~~~vGKSsLl  117 (284)
                      -.+++++|.+|.+|.++.+..++...     .|..+..|....         ...-..++    .|+|+|.||||||||+
T Consensus       111 ~~~~~~~a~GG~gG~gn~~f~~~~~~-----~p~~~~~g~~g~---------~~~~~lelk~iadValVG~PNaGKSTLl  176 (390)
T PRK12298        111 HGQRLLVAKGGWHGLGNTRFKSSVNR-----APRQKTPGTPGE---------ERELKLELKLLADVGLLGLPNAGKSTFI  176 (390)
T ss_pred             CCcEEEEecCCCCccchhhhccCccC-----CCcccCCCCCCc---------eEEEEEeeeccccEEEEcCCCCCHHHHH
Confidence            36788999999999988665444332     223333332221         11111122    4889999999999999


Q ss_pred             HHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc----cccc---cccCCcEEEEEEeCC---Chhh
Q 023316          118 VKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----HVPI---ACKDAVAILFMFDLT---SRCT  186 (284)
Q Consensus       118 ~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~----~~~~---~~~~ad~iilv~d~~---~~~s  186 (284)
                      |++++.+.. ..++.++.......+.+++ ...+.++||+|..+-..    +...   ++..++++++|+|++   +.++
T Consensus       177 n~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~  255 (390)
T PRK12298        177 RAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDP  255 (390)
T ss_pred             HHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccCh
Confidence            999988765 6666444444444555543 23477999999864221    2222   467899999999998   5677


Q ss_pred             HHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHH
Q 023316          187 LNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIM  261 (284)
Q Consensus       187 ~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~  261 (284)
                      ++++..|++++..+..   ..|.|+|+||+|+.    .  .....+...++.+..+  .+++.+||+++.|++++++.+.
T Consensus       256 ~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~----~--~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~  329 (390)
T PRK12298        256 VENARIIINELEKYSPKLAEKPRWLVFNKIDLL----D--EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLM  329 (390)
T ss_pred             HHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC----C--hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHH
Confidence            8888899999887753   45668999999962    1  1122344555655544  4789999999999999999999


Q ss_pred             HHHhCCccccccccCCCC
Q 023316          262 AKLFNLPWTVKRNLTIGE  279 (284)
Q Consensus       262 ~~i~~~~~~~~~~~~~~~  279 (284)
                      ..+...++..+....++.
T Consensus       330 ~~L~~~~~~~~~~~~td~  347 (390)
T PRK12298        330 TFIEENPREEAEEAEAPE  347 (390)
T ss_pred             HHhhhCcccCCcccccCc
Confidence            999877776555444443

>cd01878 HflX HflX subfamily

Probab=99.88  E-value=3.1e-22  Score=168.76  Aligned_cols=154  Identities=17%  Similarity=0.155  Sum_probs=110.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--ccc------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--HVP------IACK  170 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--~~~------~~~~  170 (284)
                      .++|+|+|++|||||||++++++.++. ...+..+.+.....+.+++. ..+.+|||+|......  +..      ..+.
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~  119 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEVA  119 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence            479999999999999999999998754 33332333333444555443 2578999999843211  111      1357


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC-ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~-~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      .+|++++|+|++++.++.....|.+.+....... |+++|+||+|+.   +..   .    ...++...+.+++++||++
T Consensus       120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~---~~~---~----~~~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL---DDE---E----LEERLEAGRPDAVFISAKT  189 (204)
T ss_pred             cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC---ChH---H----HHHHhhcCCCceEEEEcCC
Confidence            8999999999999999988888888777655433 558999999962   111   1    1134455677899999999


Q ss_pred             CcCHHHHHHHHHHHH
Q 023316          250 NINVNKIFKFIMAKL  264 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i  264 (284)
                      +.|++++|+++...+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999988653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=4.4e-22  Score=180.44  Aligned_cols=261  Identities=14%  Similarity=0.110  Sum_probs=177.2

Q ss_pred             hhhHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc--c----ccccccCCCCCCCCCcc
Q 023316            2 AKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV--R----YQKLTRRSSSESSPAPD   75 (284)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~--~----~~~~~~~~~~~~~~~~~   75 (284)
                      +.|..|+..||.+++..+|.||.|.++..-+.-+.+.+|+.+.+++++-++..+..  .    |..++...+-.-|+.+.
T Consensus        71 ~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg  150 (444)
T COG1160          71 ELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhc
Confidence            35889999999999999999999999999999999999988889988888665431  1    44455444432233333


Q ss_pred             ccccccccc-cccc-CCCCCCC-CCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEE
Q 023316           76 TMEAGLVEL-SRTF-SSGYDTD-SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAF  150 (284)
Q Consensus        76 ~~~~~~~~~-~~~~-~~~~~~~-~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l  150 (284)
                      ......-.. .... ....... .....+||+++|.||||||||+|++++.+..  +..+.++.|.....+.++++.+  
T Consensus       151 ~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--  228 (444)
T COG1160         151 RGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--  228 (444)
T ss_pred             cCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--
Confidence            322221111 0111 1110111 1124799999999999999999999999877  7788888888888888899875  


Q ss_pred             EEEeCCCCcCCccccc-----------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCC
Q 023316          151 SIWDVGGDSRSFDHVP-----------IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL  219 (284)
Q Consensus       151 ~l~Dt~G~e~~~~~~~-----------~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~  219 (284)
                      .+.||+|..+-..+..           ..+..+|.+++|.|.+.+-+-++.+ ....+.+  .....|+|.||||+.+. 
T Consensus       229 ~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~~-  304 (444)
T COG1160         229 VLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVEE-  304 (444)
T ss_pred             EEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCCc-
Confidence            4899999877443332           2456899999999999877655533 2222222  24455899999997321 


Q ss_pred             CCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316          220 PPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       220 ~~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      +........++.+..... ..++.+.+||+++.+++++|+.+........
T Consensus       305 ~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~  354 (444)
T COG1160         305 DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECAT  354 (444)
T ss_pred             hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence            001111112333332222 2468999999999999999999887665443

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.88  E-value=1.1e-21  Score=157.76  Aligned_cols=147  Identities=13%  Similarity=0.073  Sum_probs=111.7

Q ss_pred             EEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc------cccccc--CCcEE
Q 023316          105 LLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIACK--DAVAI  175 (284)
Q Consensus       105 llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~------~~~~~~--~ad~i  175 (284)
                      |+|.+|||||||++++.+..+. ..+++++.+.....+.+++.  .+.+|||+|++.+...      ...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999998755 66677777777777777764  5789999999887653      555664  99999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |+|+|.++.+..   ..|...+.+.  ..|.|+|+||+|+.    ...  ........+++.++++++++||.++.|+++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~----~~~--~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~  147 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEA----EKR--GIKIDLDKLSELLGVPVVPTSARKGEGIDE  147 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhc----ccc--cchhhHHHHHHhhCCCeEEEEccCCCCHHH
Confidence            999999876543   2444444432  34558999999962    111  122334567777889999999999999999


Q ss_pred             HHHHHHHHH
Q 023316          256 IFKFIMAKL  264 (284)
Q Consensus       256 lf~~l~~~i  264 (284)
                      +|+++...+
T Consensus       148 l~~~l~~~~  156 (158)
T cd01879         148 LKDAIAELA  156 (158)
T ss_pred             HHHHHHHHh
Confidence            999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=1.5e-21  Score=182.52  Aligned_cols=257  Identities=15%  Similarity=0.128  Sum_probs=157.3

Q ss_pred             hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc------ccccccCCCCCCCCCcccc
Q 023316            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR------YQKLTRRSSSESSPAPDTM   77 (284)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~   77 (284)
                      +..++..++.++...++.+|.+.++.....-+.+.+|.....++++-++......      +.++.....-.-|+.....
T Consensus        68 ~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~g  147 (429)
T TIGR03594        68 IREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRG  147 (429)
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCC
Confidence            4456667778888889999999988887777778888776667776664332111      1111111000001111110


Q ss_pred             ccccc-ccccccCC-CCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEE
Q 023316           78 EAGLV-ELSRTFSS-GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIW  153 (284)
Q Consensus        78 ~~~~~-~~~~~~~~-~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~  153 (284)
                      ....- ........ ..........+||+++|.+|+|||||++++++.+..  ...++++.+.....+..++.  .+.+|
T Consensus       148 v~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~li  225 (429)
T TIGR03594       148 IGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLI  225 (429)
T ss_pred             hHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEE
Confidence            00000 00000000 001111234589999999999999999999988744  55566666666566666665  46799


Q ss_pred             eCCCCcCCcccc-----------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316          154 DVGGDSRSFDHV-----------PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  222 (284)
Q Consensus       154 Dt~G~e~~~~~~-----------~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~  222 (284)
                      ||+|..++....           ..+++.+|++|+|+|++++.+.++.. ++..+.+.  ..+.|+|+||+||..  +..
T Consensus       226 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~--~~~  300 (429)
T TIGR03594       226 DTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVK--DEK  300 (429)
T ss_pred             ECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCC--CHH
Confidence            999987765432           23678999999999999988877654 33444332  345589999999720  111


Q ss_pred             cccchHHHHHH-HHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          223 LQWTIATQARA-YAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       223 ~~~~~~~~~~~-~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ......++... +....+++++++||++|.|++++|+++.......
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       301 TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            11111122221 1112257999999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00436 era GTP-binding protein Era

Probab=99.87  E-value=4.2e-21  Score=168.91  Aligned_cols=167  Identities=16%  Similarity=0.116  Sum_probs=118.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-cc-------ccccccC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DH-------VPIACKD  171 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-~~-------~~~~~~~  171 (284)
                      +|+++|.+|||||||+|+|++.++.  +..+.++.+........++  ..+.+|||+|..... .+       ...++.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999998865  4444333333222222233  457899999986532 11       2346789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN  250 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~  250 (284)
                      +|++++|+|+++..+.+  ..+++.+...  ..|.++|+||+|+.    .  .....+....++...+. +++++||++|
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~~--~~p~ilV~NK~Dl~----~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g  149 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQNL--KRPVVLTRNKLDNK----F--KDKLLPLIDKYAILEDFKDIVPISALTG  149 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHhc--CCCEEEEEECeeCC----C--HHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence            99999999999877764  4455555432  34558999999962    1  12223445555555554 7899999999


Q ss_pred             cCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023316          251 INVNKIFKFIMAKLFNLPWTVKRNLTIGEP  280 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  280 (284)
                      .|++++++++...+...+|.......++.|
T Consensus       150 ~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~  179 (270)
T TIGR00436       150 DNTSFLAAFIEVHLPEGPFRYPEDYVTDQP  179 (270)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCcccCCCC
Confidence            999999999999999999887777655544

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.87  E-value=1.3e-21  Score=150.68  Aligned_cols=113  Identities=28%  Similarity=0.530  Sum_probs=91.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC---CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ||+|+|++|||||||+++|++.++.   ...++.+.++......+.+....+++||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999999876   2223445555555667777777799999999999888888889999999999


Q ss_pred             EeCCChhhHHHHH---HHHHHHHhHCCCCceEEEEeCCC
Q 023316          179 FDLTSRCTLNSIV---GWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       179 ~d~~~~~s~~~~~---~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      ||+++++||+.+.   .|+..+..+..+.|.||||||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            9999999999974   56777777666655589999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.87  E-value=1.9e-21  Score=162.75  Aligned_cols=148  Identities=14%  Similarity=0.129  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc--CCCCCcc-------------cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG--NEQERSL-------------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV  165 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~--~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~  165 (284)
                      -+|+++|+++||||||+++|+.  +.+...+             .+.|.++..+...++...+.+.+|||+|+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999997  4454221             235566665655666667889999999999999999


Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-------Hc
Q 023316          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AM  238 (284)
Q Consensus       166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-------~~  238 (284)
                      ..+++.+|++++|||+++.. +.....|+..+..  ...|+++|+||+|+.    ........++..++..       ..
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~  155 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRP----DARPEEVVDEVFDLFIELGATEEQL  155 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCC----CCCHHHHHHHHHHHHHHhCCccccC
Confidence            99999999999999998742 3333445554433  244568999999962    2222223445555542       23


Q ss_pred             CCcEEEEcCCCCcCHHH
Q 023316          239 KATLFFSSATHNINVNK  255 (284)
Q Consensus       239 ~~~~~~~Sa~~~~~v~~  255 (284)
                      +++++++||++|.|+.+
T Consensus       156 ~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         156 DFPVLYASAKNGWASLN  172 (194)
T ss_pred             ccCEEEeehhccccccc
Confidence            67899999999988643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.86  E-value=7.1e-21  Score=154.78  Aligned_cols=157  Identities=10%  Similarity=0.019  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .|+++|++|+|||||+++|.+.++.. ..+++..++....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999988773 23333433333334333 23567889999999999888888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCCCcCH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATHNINV  253 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~Sa~~~~~v  253 (284)
                      |+++....+... .+..+..  ...|+++|+||+|+.    .............+..      ...++++++||++|+|+
T Consensus        82 d~~~~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA--ANVPFIVALNKIDKP----NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI  154 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH--cCCCEEEEEEceecc----cccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence            998854322222 1222322  244668999999962    1111111122222211      12368999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023316          254 NKIFKFIMAKLF  265 (284)
Q Consensus       254 ~~lf~~l~~~i~  265 (284)
                      +++|+++.....
T Consensus       155 ~~l~~~l~~~~~  166 (168)
T cd01887         155 DDLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.86  E-value=3.4e-23  Score=165.50  Aligned_cols=168  Identities=21%  Similarity=0.322  Sum_probs=139.6

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCe-EEEEEEEeCCCCcCCcccccccccCCcE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~e~~~~~~~~~~~~ad~  174 (284)
                      ....+|+.|+|+-|+||||++.+|+...|. .+..|+|.++..+.+..++. .+.+++||++||++|..+...||+.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            345789999999999999999999999998 55669999998888877654 4678999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCC----CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCC
Q 023316          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ----TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSAT  248 (284)
Q Consensus       175 iilv~d~~~~~s~~~~~~~~~~l~~~~~----~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~  248 (284)
                      ..+|||+++.-+|+.+..|.+++.....    ...| |+.+||||.    ..............+++++|+ ..+++|++
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~----e~~a~~~~~~~~d~f~kengf~gwtets~K  177 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ----EKSAKNEATRQFDNFKKENGFEGWTETSAK  177 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhcc----ChHhhhhhHHHHHHHHhccCccceeeeccc
Confidence            9999999999999999999999876532    2233 689999995    111111113556677888886 68999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCc
Q 023316          249 HNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~~  268 (284)
                      .+.|++|+-..++..++-+.
T Consensus       178 enkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  178 ENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             cccChhHHHHHHHHHHHhhc
Confidence            99999999999999887554

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.86  E-value=1.3e-20  Score=148.56  Aligned_cols=153  Identities=25%  Similarity=0.407  Sum_probs=118.3

Q ss_pred             EEcCCCCChHHHHHHHhcCCC-CCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC
Q 023316          105 LLGDCQIGKTSFVVKYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS  183 (284)
Q Consensus       105 llG~~~vGKSsLl~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~  183 (284)
                      ++|.+|+|||||++++.+... .....++..++........+....+.+||++|+..+......+++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999999887 4444444478887777777778899999999999988888888999999999999999


Q ss_pred             hhhHHHHHHHHH--HHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023316          184 RCTLNSIVGWYS--EARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM  261 (284)
Q Consensus       184 ~~s~~~~~~~~~--~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~  261 (284)
                      ..+++....|..  .........+.++++||+|+.   ... ...............+++++++|+.++.|++++++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~---~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLP---EER-VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc---ccc-chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999999888732  222233444558999999962   111 11111114455566678999999999999999999975

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.86  E-value=9.4e-22  Score=165.35  Aligned_cols=149  Identities=17%  Similarity=0.213  Sum_probs=100.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCC-----------CcCCcccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPI  167 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G-----------~e~~~~~~~~  167 (284)
                      .+||+++|.+|||||||++++.+..+. ...++++  +....+.+.    .+.+|||+|           +++++.++..
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            579999999999999999999998876 4444443  333344333    478999999           4566666666


Q ss_pred             ccc----CCcEEEEEEeCCChhhHHHHHHH------------HHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHH
Q 023316          168 ACK----DAVAILFMFDLTSRCTLNSIVGW------------YSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQA  231 (284)
Q Consensus       168 ~~~----~ad~iilv~d~~~~~s~~~~~~~------------~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~  231 (284)
                      |+.    .++++++|+|.++...+  ...|            +..+..  ...|+++|+||+|+.    ...    .+..
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~----~~~----~~~~  150 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKI----KNR----DEVL  150 (201)
T ss_pred             HHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECcccc----CcH----HHHH
Confidence            664    34677777776543211  0122            222222  245668999999962    111    2345


Q ss_pred             HHHHHHcCC---------cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          232 RAYAKAMKA---------TLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       232 ~~~a~~~~~---------~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      .++++.+++         +++++||++| |++++|++|...+...
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            556666654         4799999999 9999999999886443

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.86  E-value=5.3e-21  Score=173.58  Aligned_cols=151  Identities=15%  Similarity=0.125  Sum_probs=110.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC---------Ccccccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~---------~~~~~~~~~  169 (284)
                      .++|+++|.+|||||||+|+|++.++. .+.+.++.+...+.+.+++. ..+.+|||+|..+         |.... ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            489999999999999999999998754 45554456666777777432 3578999999832         22211 247


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      .++|++|+|+|++++.+++.+..|.+.+..... +.|.|+|+||+|+.   + .  .    +...+. ....+++++||+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~---~-~--~----~v~~~~-~~~~~~i~iSAk  335 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL---D-E--P----RIERLE-EGYPEAVFVSAK  335 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC---C-h--H----hHHHHH-hCCCCEEEEEcc
Confidence            899999999999999988888777776666543 34558999999962   1 1  1    111111 123468999999


Q ss_pred             CCcCHHHHHHHHHHH
Q 023316          249 HNINVNKIFKFIMAK  263 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~  263 (284)
                      +|.|++++++++...
T Consensus       336 tg~GI~eL~~~I~~~  350 (351)
T TIGR03156       336 TGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.86  E-value=1.3e-20  Score=175.73  Aligned_cols=150  Identities=15%  Similarity=0.232  Sum_probs=119.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------ccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~  169 (284)
                      .+||+++|++|||||||+|+|++....  ..+++++.++....+.++|..  +.+|||+|+..+...        ...++
T Consensus       203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            589999999999999999999987643  677877888888888888755  579999999775543        23578


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      +++|++++|||++++.++++.  |+..+..  ...|.|+|+||+|+.    ..       +...+++..+.+++++||++
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~----~~-------~~~~~~~~~~~~~~~vSak~  345 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLK----IN-------SLEFFVSSKVLNSSNLSAKQ  345 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCC----Cc-------chhhhhhhcCCceEEEEEec
Confidence            999999999999999888775  7776643  234558999999962    11       12345667788999999997


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023316          250 NINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~  267 (284)
                       .||+++|+.+.+.+.+.
T Consensus       346 -~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       346 -LKIKALVDLLTQKINAF  362 (442)
T ss_pred             -CCHHHHHHHHHHHHHHH
Confidence             69999999999887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.85  E-value=2e-20  Score=153.12  Aligned_cols=152  Identities=16%  Similarity=0.121  Sum_probs=106.7

Q ss_pred             EEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcC----Cccccc---ccccCCcEE
Q 023316          105 LLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSR----SFDHVP---IACKDAVAI  175 (284)
Q Consensus       105 llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~----~~~~~~---~~~~~ad~i  175 (284)
                      ++|++|||||||++++.+.++. ..++.+..+.....+.++ +  ..+.+|||+|...    ...+..   .+++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            5899999999999999998753 444433333333445555 4  4478999999743    223332   346789999


Q ss_pred             EEEEeCCCh------hhHHHHHHHHHHHHhHCC--------CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023316          176 LFMFDLTSR------CTLNSIVGWYSEARKWNQ--------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT  241 (284)
Q Consensus       176 ilv~d~~~~------~s~~~~~~~~~~l~~~~~--------~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~  241 (284)
                      ++|+|+++.      .+++++..|...+.....        ..|.++|+||+|+.    .... .............+.+
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~----~~~~-~~~~~~~~~~~~~~~~  153 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD----DAEE-LEEELVRELALEEGAE  153 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC----chhH-HHHHHHHHHhcCCCCC
Confidence            999999988      578888888888876532        34558999999962    1111 1111123444455678


Q ss_pred             EEEEcCCCCcCHHHHHHHHHHH
Q 023316          242 LFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       242 ~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      ++++||+++.|++++++++...
T Consensus       154 ~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         154 VVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEEehhhhcCHHHHHHHHHhh
Confidence            9999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=1.7e-20  Score=177.22  Aligned_cols=153  Identities=22%  Similarity=0.272  Sum_probs=110.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC--------Ccccccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~--------~~~~~~~~~  169 (284)
                      ..+|+|+|.+|||||||+|+|++....  ...++++.+.....+.+++..  +.+|||+|++.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999998754  455566666666666677654  67999999874        223345678


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      +.+|++|+|||+++..++.. ..|.+.++.  ...|.|+|+||+|+.    ..    ..+....+...++ ..+++||++
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~----~~----~~~~~~~~~~g~~-~~~~iSA~~  183 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDE----RG----EADAAALWSLGLG-EPHPVSALH  183 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCC----cc----chhhHHHHhcCCC-CeEEEEcCC
Confidence            99999999999999877643 344444443  245668999999962    11    1112222322233 357899999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023316          250 NINVNKIFKFIMAKLFN  266 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~  266 (284)
                      |.|++++|++++..+.+
T Consensus       184 g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        184 GRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCcHHHHHHHHhhccc
Confidence            99999999999998855

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.85  E-value=1.6e-21  Score=150.18  Aligned_cols=160  Identities=19%  Similarity=0.290  Sum_probs=122.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      .++.+.++|..++|||||+|....+.+. .-.||.|.+..    .+....+++.+||.+||.+|+++|..|++.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            3688999999999999999999988888 56778897754    344566889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |.|..+++.++..+.-+..+... .-.++| +++|||.|+..++...  ..+++.+..-.....+-.|.+|+++..|++-
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~--~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI--ALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH--HHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            99999999887776555555443 335666 6899999964444431  1111111222222345678899999999999


Q ss_pred             HHHHHHHHH
Q 023316          256 IFKFIMAKL  264 (284)
Q Consensus       256 lf~~l~~~i  264 (284)
                      +.+|+++..
T Consensus       173 ~~~Wli~hs  181 (186)
T KOG0075|consen  173 TLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHh
Confidence            999998765

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.84  E-value=6.4e-20  Score=147.01  Aligned_cols=145  Identities=16%  Similarity=0.235  Sum_probs=108.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------cccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK  170 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~~  170 (284)
                      +||+++|++|+|||||++++.+....  ...+++..++....+..++  ..+.+|||+|...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999988754  4455666666655666655  45789999998775432        224677


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  250 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~  250 (284)
                      .+|++++|+|++++.+..+...|..     ....++++|+||+|+.   +.. ..        .....+.+++++||+++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~---~~~-~~--------~~~~~~~~~~~~Sa~~~  142 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLL---PDS-EL--------LSLLAGKPIIAISAKTG  142 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcC---Ccc-cc--------ccccCCCceEEEECCCC
Confidence            9999999999999888877655433     3345668999999962   111 11        33445678999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      .|++++++++...+
T Consensus       143 ~~v~~l~~~l~~~~  156 (157)
T cd04164         143 EGLDELKEALLELA  156 (157)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-19  Score=140.80  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=132.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCC-cccccccccCCcEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRS-FDHVPIACKDAVAI  175 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~-~~~~~~~~~~ad~i  175 (284)
                      ..||+++|..+||||+++.+++..+..  ..+.++-.|++...+.- +|..-.+.++||+|...+ ..+-++|+.-+|++
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf   88 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF   88 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence            579999999999999999999766644  33445555666666654 466667899999999888 67888999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                      ++|||..|++||+.+..+..+|.+... ..+| +++|||+|+.     +...+..+.+..||+.-.+..++++|.+...+
T Consensus        89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~-----~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL  163 (198)
T KOG3883|consen   89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA-----EPREVDMDVAQIWAKREKVKLWEVTAMDRPSL  163 (198)
T ss_pred             EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-----cchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence            999999999999998866666666543 3344 6899999962     22344578899999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023316          254 NKIFKFIMAKLFNLP  268 (284)
Q Consensus       254 ~~lf~~l~~~i~~~~  268 (284)
                      -|-|..+...+.+..
T Consensus       164 ~epf~~l~~rl~~pq  178 (198)
T KOG3883|consen  164 YEPFTYLASRLHQPQ  178 (198)
T ss_pred             hhHHHHHHHhccCCc
Confidence            999999999887654

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.3e-20  Score=141.30  Aligned_cols=158  Identities=15%  Similarity=0.179  Sum_probs=122.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +++|+++|-.++||||++.+++.+......||+|.++.  ++.+  +++.|.+||.+|+++.+.+|++||....++|||.
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve--tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~   92 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   92 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCCcccccccceeEE--EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence            79999999999999999999999988888899998765  4444  4577999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHH--HHHcCCcEEEEcCCCCcCHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAY--AKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |..+++..++.+.-+..+... .-...+ ++.+||.|+.    .........+..++  ++...+-...+||.+|+++.|
T Consensus        93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp----~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP----DAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc----cccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            999998888887555555433 223344 6889999963    33322222222222  233345566799999999999


Q ss_pred             HHHHHHHHHh
Q 023316          256 IFKFIMAKLF  265 (284)
Q Consensus       256 lf~~l~~~i~  265 (284)
                      -|.|+++.+.
T Consensus       169 glswlsnn~~  178 (180)
T KOG0071|consen  169 GLSWLSNNLK  178 (180)
T ss_pred             HHHHHHhhcc
Confidence            9999987653

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.83  E-value=2.8e-20  Score=150.85  Aligned_cols=140  Identities=13%  Similarity=0.147  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc----cccccCCcEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----PIACKDAVAILF  177 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~----~~~~~~ad~iil  177 (284)
                      ||+++|.+|+|||||++++.+.. .....+.+.+       +.+.    .+|||+|+......+    ...++.+|++|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999987653 2112232322       2222    269999984322111    123689999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC--cEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--TLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~Sa~~~~~v~~  255 (284)
                      |+|+++.+++  +..|+..+   ....|.++++||+|+    +..    ..+...+++++.++  +++++||++|+|+++
T Consensus        71 v~d~~~~~s~--~~~~~~~~---~~~~~ii~v~nK~Dl----~~~----~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~  137 (158)
T PRK15467         71 VHGANDPESR--LPAGLLDI---GVSKRQIAVISKTDM----PDA----DVAATRKLLLETGFEEPIFELNSHDPQSVQQ  137 (158)
T ss_pred             EEeCCCcccc--cCHHHHhc---cCCCCeEEEEEcccc----Ccc----cHHHHHHHHHHcCCCCCEEEEECCCccCHHH
Confidence            9999988876  33565543   223455899999996    221    23456677777775  899999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+.+.+.+.+
T Consensus       138 l~~~l~~~~~~  148 (158)
T PRK15467        138 LVDYLASLTKQ  148 (158)
T ss_pred             HHHHHHHhchh
Confidence            99999877643

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.83  E-value=6.5e-20  Score=171.76  Aligned_cols=147  Identities=17%  Similarity=0.212  Sum_probs=114.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------ccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~  169 (284)
                      .+||+++|.+|+|||||+|+|++.+..  ...+.++.++....+.++|..  +.+|||+|.+.+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            479999999999999999999998753  666777778877888887754  679999999875542        22368


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      +++|++++|||++++.++++...|..     ....|.++|+||+|+.    +...  ..       ...+.+++++||++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~----~~~~--~~-------~~~~~~~i~iSAkt  354 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLT----GEID--LE-------EENGKPVIRISAKT  354 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhcc----ccch--hh-------hccCCceEEEEeeC
Confidence            89999999999999988887655543     3345568999999962    1111  01       33467899999999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023316          250 NINVNKIFKFIMAKLFN  266 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~  266 (284)
                      |.|++++++++...+..
T Consensus       355 g~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        355 GEGIDELREAIKELAFG  371 (449)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999988754

>cd01889 SelB_euk SelB subfamily

Probab=99.83  E-value=5.9e-20  Score=153.50  Aligned_cols=160  Identities=13%  Similarity=0.069  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC----CCC----Cccc--ccceeeeeEEEE----------ECCeEEEEEEEeCCCCcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN----EQE----RSLQ--MAGLNLINKTLM----------VQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~----~~~----~~~~--t~~~~~~~~~~~----------~~~~~~~l~l~Dt~G~e~  160 (284)
                      ++|+++|++++|||||+++|++.    .+.    +..+  |.+..+....+.          ..+....+.+|||+|+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999872    121    1112  334343333332          123467789999999976


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHH-HHH---
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA-YAK---  236 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~a~---  236 (284)
                      +..........+|++++|+|+++..+......|.. . ... ..++++++||+|+.   .........++..+ +.+   
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~-~~~-~~~~iiv~NK~Dl~---~~~~~~~~~~~~~~~l~~~~~  154 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-G-EIL-CKKLIVVLNKIDLI---PEEERERKIEKMKKKLQKTLE  154 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-H-HHc-CCCEEEEEECcccC---CHHHHHHHHHHHHHHHHHHHH
Confidence            43333233567899999999988655444333321 1 112 34558999999962   11111111222222 111   


Q ss_pred             ---HcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          237 ---AMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       237 ---~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                         ..+++++++||++|.|++++++++..+|..
T Consensus       155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence               236789999999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.83  E-value=1.1e-19  Score=150.40  Aligned_cols=155  Identities=13%  Similarity=0.084  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCccc-----------------ccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ-----------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~  164 (284)
                      +|+++|.+|+|||||++.+++........                 ++..+.....+...  ...+.+|||+|+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            48999999999999999999887663221                 11222222223333  456889999999998888


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-------
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------  237 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-------  237 (284)
                      +..+++.+|++++|+|+++..+... ..++..+..  ...++++|+||+|+.   .++......+..++..+.       
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~  152 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRV---GEEDLEEVLREIKELLGLIGFISTK  152 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCc---chhcHHHHHHHHHHHHccccccchh
Confidence            8889999999999999988765443 344444443  345668999999973   222212223334444333       


Q ss_pred             -------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          238 -------MKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       238 -------~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                             ...+++++||++|.|++++|.++.+.+
T Consensus       153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                   357889999999999999999999886

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01894 EngA1 EngA1 subfamily

Probab=99.83  E-value=1.5e-19  Score=145.05  Aligned_cols=145  Identities=19%  Similarity=0.203  Sum_probs=101.6

Q ss_pred             EEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------cccccccCCc
Q 023316          104 SLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIACKDAV  173 (284)
Q Consensus       104 ~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~~~~~~ad  173 (284)
                      +++|.+|+|||||++++.+....  ...+.++.+........++  ..+.+|||+|...+..        ....+++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987633  4445555555555555555  4578999999988654        2345678999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316          174 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNIN  252 (284)
Q Consensus       174 ~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~  252 (284)
                      ++++|+|..+..+.... .+.+.+.+.  ..|.++|+||+|+.    +..     .. .......+. +++++||++|.|
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~----~~~-----~~-~~~~~~~~~~~~~~~Sa~~~~g  145 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNI----KEE-----DE-AAEFYSLGFGEPIPISAEHGRG  145 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccC----ChH-----HH-HHHHHhcCCCCeEEEecccCCC
Confidence            99999999876554432 222223222  34558999999962    111     11 222334565 789999999999


Q ss_pred             HHHHHHHHHHH
Q 023316          253 VNKIFKFIMAK  263 (284)
Q Consensus       253 v~~lf~~l~~~  263 (284)
                      ++++|+++++.
T Consensus       146 v~~l~~~l~~~  156 (157)
T cd01894         146 IGDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.83  E-value=1.7e-19  Score=167.39  Aligned_cols=156  Identities=15%  Similarity=0.139  Sum_probs=111.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC--cccccc------cccC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVPI------ACKD  171 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--~~~~~~------~~~~  171 (284)
                      .+|+++|.+|||||||+|+|++.++. .+.+.++.+.....+.+.+.. .+.+|||+|..+.  ..++..      .++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999998765 455555566666666665531 4669999998542  222332      3689


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCC
Q 023316          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATH  249 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~  249 (284)
                      +|++|+|+|++++.+++.+..|.+.+..... ..|+|+|+||+|+.   +.. .  ..  ..  ....+.+ ++++||++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~---~~~-~--~~--~~--~~~~~~~~~v~ISAkt  346 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML---DDF-E--PR--ID--RDEENKPIRVWLSAQT  346 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC---Cch-h--HH--HH--HHhcCCCceEEEeCCC
Confidence            9999999999999888887655554544433 34558999999962   111 0  00  11  1123555 48899999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023316          250 NINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~  267 (284)
                      |.|++++++++...+...
T Consensus       347 G~GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        347 GAGIPLLFQALTERLSGE  364 (426)
T ss_pred             CCCHHHHHHHHHHHhhhc
Confidence            999999999999988543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=9e-20  Score=179.90  Aligned_cols=257  Identities=15%  Similarity=0.105  Sum_probs=154.4

Q ss_pred             hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc------ccccccCCCCCCCCCcccc
Q 023316            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR------YQKLTRRSSSESSPAPDTM   77 (284)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~   77 (284)
                      +..++..++..+...++.+|.+.++.....-+.+.++.....++++-++......      +..+.....-..|+-....
T Consensus       344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRG  423 (712)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCC
Confidence            4556666677777888999999888777766677777766666666554432111      1111111000001111100


Q ss_pred             cccccc-cccccCCCCCCC---CCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEE
Q 023316           78 EAGLVE-LSRTFSSGYDTD---SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFS  151 (284)
Q Consensus        78 ~~~~~~-~~~~~~~~~~~~---~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~  151 (284)
                      ....-. ............   .....+||+++|.+|||||||+|++++.+..  ..+++++.+.....+.+++..  +.
T Consensus       424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~  501 (712)
T PRK09518        424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WL  501 (712)
T ss_pred             chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EE
Confidence            000000 000000000000   0123489999999999999999999998853  667777777777777788876  45


Q ss_pred             EEeCCCCcCCc----------ccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          152 IWDVGGDSRSF----------DHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       152 l~Dt~G~e~~~----------~~~-~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      +|||+|..+..          .+. ..+++.+|++++|+|+++..++++... +..+..  ...|.|+|+||+||.   +
T Consensus       502 liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~--~~~piIiV~NK~DL~---~  575 (712)
T PRK09518        502 FIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVD--AGRALVLVFNKWDLM---D  575 (712)
T ss_pred             EEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH--cCCCEEEEEEchhcC---C
Confidence            99999975321          111 234689999999999999988887653 344433  234668999999973   2


Q ss_pred             CCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316          221 PDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      .........+....... ..++.+++||++|.|++++|+.+.+...+..
T Consensus       576 ~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        576 EFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWD  624 (712)
T ss_pred             hhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            11111111111111111 1357789999999999999999998876543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.82  E-value=7.3e-20  Score=146.72  Aligned_cols=147  Identities=13%  Similarity=0.118  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc------cccccc--cC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--KD  171 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~------~~~~~~--~~  171 (284)
                      ++|+++|.||||||||+|++++.+.. .++|.++.+.....+.+.+..  +.+.|++|.-....      +...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            58999999999999999999999977 888988888888888888854  67999999755432      223343  68


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023316          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  251 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~  251 (284)
                      .|++|+|.|.++.+.-.   ....++.+.  ..|.|++.||+|+      ..+.-...+...+++..|++++.+||++++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~--g~P~vvvlN~~D~------a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~  147 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLEL--GIPVVVVLNKMDE------AERKGIEIDAEKLSERLGVPVIPVSARTGE  147 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHHT--TSSEEEEEETHHH------HHHTTEEE-HHHHHHHHTS-EEEEBTTTTB
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHHc--CCCEEEEEeCHHH------HHHcCCEECHHHHHHHhCCCEEEEEeCCCc
Confidence            99999999998754322   233333332  3556899999995      222222334678888899999999999999


Q ss_pred             CHHHHHHHH
Q 023316          252 NVNKIFKFI  260 (284)
Q Consensus       252 ~v~~lf~~l  260 (284)
                      |++++++.|
T Consensus       148 g~~~L~~~I  156 (156)
T PF02421_consen  148 GIDELKDAI  156 (156)
T ss_dssp             THHHHHHHH
T ss_pred             CHHHHHhhC
Confidence            999998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=2.5e-19  Score=167.85  Aligned_cols=250  Identities=18%  Similarity=0.184  Sum_probs=151.4

Q ss_pred             hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc------cccccccCCCCCCCCCcccc
Q 023316            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM   77 (284)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~   77 (284)
                      +..++..++.+++..++.+|.+.++......+.+.++....+++++-++.....      .+..+....     +-+...
T Consensus        70 ~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~-----~~~iSa  144 (435)
T PRK00093         70 IREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGE-----PYPISA  144 (435)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCC-----CEEEEe
Confidence            445566677888888999999988777666677777776556666655443211      111111110     000111


Q ss_pred             ccc--cccc----ccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEE
Q 023316           78 EAG--LVEL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIA  149 (284)
Q Consensus        78 ~~~--~~~~----~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~  149 (284)
                      ..+  ....    ................+||+++|.+|+|||||++++++....  ...+++..+.....+..++..  
T Consensus       145 ~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--  222 (435)
T PRK00093        145 EHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--  222 (435)
T ss_pred             eCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--
Confidence            111  0000    000000001111234699999999999999999999987643  555666666555556666655  


Q ss_pred             EEEEeCCCCcCCcccc-----------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          150 FSIWDVGGDSRSFDHV-----------PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~~-----------~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      +.+|||+|..+...+.           ..+++.+|++|+|+|++++.+.++.. ++..+.+.  ..+.|+|+||+|+.  
T Consensus       223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~--  297 (435)
T PRK00093        223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLV--  297 (435)
T ss_pred             EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCC--
Confidence            5699999976543221           13678999999999999988776654 33333332  34568999999972  


Q ss_pred             CCCCcccchHHHHH-HHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          219 LPPDLQWTIATQAR-AYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       219 ~~~~~~~~~~~~~~-~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                       ++.......++.. .+.....++++++||++|.|++++|+.+.....+
T Consensus       298 -~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        298 -DEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             -CHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             2111111122222 2222235799999999999999999998876543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.82  E-value=3.2e-19  Score=171.93  Aligned_cols=157  Identities=12%  Similarity=0.169  Sum_probs=118.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC-------CCCcc-------cccceeeeeEEEEE-----CCeEEEEEEEeCCCCcCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE-------QERSL-------QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS  161 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~-------~~~~~-------~t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~e~~  161 (284)
                      -+|+++|+.++|||||+++|+...       +...+       ...|.++....+.+     ++..+.+.+|||+|+++|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999998652       22111       12366666554433     567789999999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-  240 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-  240 (284)
                      ...+..+++.+|++|+|+|+++..+.+....|...+.   ...+.|+|+||+|+.    ...   ..+...++++.+++ 
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~----~~~---~~~~~~el~~~lg~~  153 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLP----SAD---PERVKKEIEEVIGLD  153 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCC----ccC---HHHHHHHHHHHhCCC
Confidence            9999999999999999999999888877777765443   234558999999962    211   12233455555665 


Q ss_pred             --cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          241 --TLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       241 --~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                        .++++||++|.|++++|+++...+...
T Consensus       154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       154 ASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             cceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence              479999999999999999999887543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01895 EngA2 EngA2 subfamily

Probab=99.82  E-value=1.2e-18  Score=141.75  Aligned_cols=155  Identities=20%  Similarity=0.278  Sum_probs=105.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc-----------cc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-----------VP  166 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~-----------~~  166 (284)
                      .++|+++|++|+|||||++++++....  ...+++..+.....+..++..  +.+|||+|.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999999988744  444545445544556666655  669999998654211           11


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc----CCcE
Q 023316          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATL  242 (284)
Q Consensus       167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~----~~~~  242 (284)
                      .++..+|++++|+|++++.+..... ++..+..  ...++++++||+|+.   ... ..........+.+..    +.++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~---~~~-~~~~~~~~~~~~~~~~~~~~~~~  152 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLV---EKD-SKTMKEFKKEIRRKLPFLDYAPI  152 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccC---Ccc-HHHHHHHHHHHHhhcccccCCce
Confidence            2467999999999999988765543 3333332  234558999999962   111 011111122233333    3689


Q ss_pred             EEEcCCCCcCHHHHHHHHHHH
Q 023316          243 FFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       243 ~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      +++||+++.|++++++++.+.
T Consensus       153 ~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         153 VFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEEeccCCCCHHHHHHHHHHh
Confidence            999999999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.82  E-value=1.8e-19  Score=152.05  Aligned_cols=119  Identities=20%  Similarity=0.259  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCC-cEEEEEEe
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA-VAILFMFD  180 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~a-d~iilv~d  180 (284)
                      +|+++|+++||||||+++|...++...++++..+.........+....+.+||++|+++++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999998876666555444332222224456789999999999998888899999 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHhH----CCCCceEEEEeCCCCCCCCC
Q 023316          181 LTSR-CTLNSIVGWYSEARKW----NQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       181 ~~~~-~s~~~~~~~~~~l~~~----~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      .++. .++.++..|+..+...    ....|+++++||+|+....+
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence            9997 6788877766555332    23445579999999865444

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.81  E-value=4.1e-19  Score=148.36  Aligned_cols=156  Identities=13%  Similarity=0.157  Sum_probs=102.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCc----------CCcccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVPI  167 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e----------~~~~~~~~  167 (284)
                      ..+||+++|.+|+|||||++++++.++. ...++.|.+.......+   ...+.+|||+|..          .+..+...
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            4789999999999999999999998754 33334443322222222   2568899999953          23344445


Q ss_pred             cccCC---cEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316          168 ACKDA---VAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  242 (284)
Q Consensus       168 ~~~~a---d~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~  242 (284)
                      +++.+   +++++++|.+++.+..+  +..|+.   .  ...+.++++||+|+   ++........+++..+......++
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~---~--~~~~~iiv~nK~Dl---~~~~~~~~~~~~i~~~l~~~~~~~  171 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLK---E--YGIPVLIVLTKADK---LKKGERKKQLKKVRKALKFGDDEV  171 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHHHHHHHHH---H--cCCcEEEEEECccc---CCHHHHHHHHHHHHHHHHhcCCce
Confidence            56544   67888899887655433  223332   1  13345899999996   332222222334445555446889


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHh
Q 023316          243 FFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       243 ~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +++||+++.|++++|+.+...+.
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhc
Confidence            99999999999999999987764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.80  E-value=6.8e-19  Score=169.66  Aligned_cols=145  Identities=14%  Similarity=0.080  Sum_probs=110.7

Q ss_pred             cCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc------ccccc--cCCcEEEE
Q 023316          107 GDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--KDAVAILF  177 (284)
Q Consensus       107 G~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~------~~~~~--~~ad~iil  177 (284)
                      |++|||||||+|++++..+. .++++++.+.....+.+++..  +++|||+|++++...      .+.|+  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999998876 777888888877777777754  679999999987654      34444  37899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |+|.++.+.   ...+..++.+  .+.|.++|+||+|+.      .+.....+.+.+++..|++++++||++|+|++++|
T Consensus        79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~------~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~  147 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEA------EKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLK  147 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHH------HhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHH
Confidence            999987432   2233333333  234558999999962      12222345678888899999999999999999999


Q ss_pred             HHHHHHH
Q 023316          258 KFIMAKL  264 (284)
Q Consensus       258 ~~l~~~i  264 (284)
                      +++.+..
T Consensus       148 ~~i~~~~  154 (591)
T TIGR00437       148 DAIRKAI  154 (591)
T ss_pred             HHHHHHh
Confidence            9998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00089 era GTPase Era; Reviewed

Probab=99.80  E-value=3.5e-18  Score=151.96  Aligned_cols=172  Identities=17%  Similarity=0.134  Sum_probs=115.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------ccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIA  168 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~~~  168 (284)
                      ..-.|+++|.+|||||||+|++++.+..  ...+.+..+........+  ...+.+|||+|......        .....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            3567999999999999999999998865  333322222222222222  36688999999865432        22335


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSA  247 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa  247 (284)
                      +.++|++++|+|+++..+- ....+++.+..  ...|.++|+||+|+   ...  ..........+.+..+ .+++.+||
T Consensus        82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~--~~~pvilVlNKiDl---~~~--~~~l~~~~~~l~~~~~~~~i~~iSA  153 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGP-GDEFILEKLKK--VKTPVILVLNKIDL---VKD--KEELLPLLEELSELMDFAEIVPISA  153 (292)
T ss_pred             HhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh--cCCCEEEEEECCcC---CCC--HHHHHHHHHHHHhhCCCCeEEEecC
Confidence            7899999999999883321 11233333332  23456899999996   211  1122445555655554 57899999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023316          248 THNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP  280 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  280 (284)
                      +++.|++++++++...+...+|....+..++.+
T Consensus       154 ~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~  186 (292)
T PRK00089        154 LKGDNVDELLDVIAKYLPEGPPYYPEDQITDRP  186 (292)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            999999999999999998888877766555443

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=1.2e-18  Score=163.19  Aligned_cols=147  Identities=19%  Similarity=0.259  Sum_probs=108.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC--------ccccccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIACK  170 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--------~~~~~~~~~  170 (284)
                      .||+++|.+|||||||+++|.+.+..  ...+.++.+.....+.+++  ..+.+|||+|++..        ......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999988753  5566666677667777777  56889999999872        223445788


Q ss_pred             CCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316          171 DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      .+|++|+|+|+++..+..  .+..|+...     ..|.|+|+||+|+.    .  .   .....++ ...++ .++++||
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~----~--~---~~~~~~~-~~lg~~~~~~iSa  144 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGP----D--E---EADAYEF-YSLGLGEPYPISA  144 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCc----c--c---hhhHHHH-HhcCCCCCEEEEe
Confidence            999999999998865443  334555432     44568999999952    1  1   1222222 34566 4899999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q 023316          248 THNINVNKIFKFIMAKL  264 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i  264 (284)
                      ++|.|++++|+.+....
T Consensus       145 ~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        145 EHGRGIGDLLDAILEEL  161 (435)
T ss_pred             eCCCCHHHHHHHHHhhC
Confidence            99999999999998843

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.79  E-value=3e-18  Score=164.50  Aligned_cols=157  Identities=11%  Similarity=0.072  Sum_probs=108.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ....+|+++|+.++|||||+++|.+.++. ...++++.++....+.+++.. .+.+|||+|++.|..++..++..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            34578999999999999999999998877 444455555555556564431 5789999999999999998999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCCc
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHNI  251 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~a~~~~--~~~~~~Sa~~~~  251 (284)
                      +|+|+++...-+....| ..+..  ...|.|+++||+|+.    ........+.+..   ....++  .+++++||++|+
T Consensus       164 LVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~----~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKP----EANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECcccc----cCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            99999874332222222 22221  234558999999962    2111111122111   122232  478999999999


Q ss_pred             CHHHHHHHHHH
Q 023316          252 NVNKIFKFIMA  262 (284)
Q Consensus       252 ~v~~lf~~l~~  262 (284)
                      |++++|+++..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.79  E-value=1e-18  Score=144.37  Aligned_cols=148  Identities=13%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----------Cccccc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVP  166 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----------~~~~~~  166 (284)
                      ....+|+++|++|+|||||++++++..+. ...++.+.+.....+..++   .+.+|||+|...          +..+..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            44689999999999999999999998644 2223333333222333333   478999999532          333344


Q ss_pred             ccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--Cc
Q 023316          167 IACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--AT  241 (284)
Q Consensus       167 ~~~~~---ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~  241 (284)
                      .|++.   ++++++|+|.+++-+..+.. ++..+...  ..|.++++||+|+   .++.......++++...+..+  ++
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~--~~pviiv~nK~D~---~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER--GIPVLIVLTKADK---LKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECccc---CCHHHHHHHHHHHHHHHhhccCCCc
Confidence            55553   57999999998866655542 23333322  3455799999996   222222223455566666554  58


Q ss_pred             EEEEcCCCCcCHH
Q 023316          242 LFFSSATHNINVN  254 (284)
Q Consensus       242 ~~~~Sa~~~~~v~  254 (284)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.78  E-value=2.5e-18  Score=165.56  Aligned_cols=156  Identities=16%  Similarity=0.114  Sum_probs=114.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC---CCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~---~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      +.|+++|+.++|||||+++|++.   .+. ....+++.++....+..++  ..+.+||++|+++|......++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            36899999999999999999973   333 2334566666666666666  66889999999999887778889999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc----CCcEEEEcCC
Q 023316          177 FMFDLTS---RCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATLFFSSAT  248 (284)
Q Consensus       177 lv~d~~~---~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~Sa~  248 (284)
                      +|+|+++   +.+++.+. +   +.. . ..+ +|+|+||+|+.   +.+......+++..+.+..    +++++++||+
T Consensus        79 LVVDa~~G~~~qT~ehl~-i---l~~-l-gi~~iIVVlNK~Dlv---~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA-V---LDL-L-GIPHTIVVITKADRV---NEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEECCCCCcHHHHHHHH-H---HHH-c-CCCeEEEEEECCCCC---CHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            9999987   44544432 2   222 1 345 58999999962   2221112345666666654    5789999999


Q ss_pred             CCcCHHHHHHHHHHHHhCC
Q 023316          249 HNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~  267 (284)
                      +|+|+++++..+...+...
T Consensus       150 tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       150 TGQGIGELKKELKNLLESL  168 (581)
T ss_pred             CCCCchhHHHHHHHHHHhC
Confidence            9999999999988766544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04163 Era Era subfamily

Probab=99.78  E-value=7.2e-18  Score=135.85  Aligned_cols=154  Identities=18%  Similarity=0.116  Sum_probs=101.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------cccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~~~~  169 (284)
                      ..+|+++|.+|+|||||++++.+.+..  ...+.+........  .......+.+|||+|......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            578999999999999999999988754  22222221111111  223346688999999865432        223457


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSAT  248 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~  248 (284)
                      ..+|++++|+|++++.+. ....+.+.+...  ..|.++|+||+|+.   ..  .....+....+.... ..+++++|++
T Consensus        81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~--~~~~iiv~nK~Dl~---~~--~~~~~~~~~~~~~~~~~~~~~~~s~~  152 (168)
T cd04163          81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS--KTPVILVLNKIDLV---KD--KEDLLPLLEKLKELGPFAEIFPISAL  152 (168)
T ss_pred             HhCCEEEEEEECCCccCc-hHHHHHHHHHHh--CCCEEEEEEchhcc---cc--HHHHHHHHHHHHhccCCCceEEEEec
Confidence            899999999999987321 122333444332  34668999999962   11  112233344444444 3689999999


Q ss_pred             CCcCHHHHHHHHHHH
Q 023316          249 HNINVNKIFKFIMAK  263 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~  263 (284)
                      ++.|++++|+++.+.
T Consensus       153 ~~~~~~~l~~~l~~~  167 (168)
T cd04163         153 KGENVDELLEEIVKY  167 (168)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.78  E-value=3e-18  Score=144.55  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC---CCccc---ccceeeeeEEEE-----------------------EC--C----
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ---ERSLQ---MAGLNLINKTLM-----------------------VQ--G----  145 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~---~~~~~---t~~~~~~~~~~~-----------------------~~--~----  145 (284)
                      ++|+++|..++|||||+..+.+-..   .....   +....+....+.                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4789999999999999999965421   11111   111111110000                       00  1    


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~----~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                      ....+.+|||+|++.|.......+..+|++++|+|++++    .+++.+..|    ... ...++|+|+||+|+.   ..
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~~~~iiivvNK~Dl~---~~  152 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-GLKHIIIVQNKIDLV---KE  152 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-CCCcEEEEEEchhcc---CH
Confidence            115688999999998877777777899999999999873    333333222    221 122447899999962   21


Q ss_pred             CcccchHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          222 DLQWTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      .......++.+++.+.+   +++++++||++|+|++++|+++...+...
T Consensus       153 ~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            11111134445555443   67899999999999999999998877553

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.77  E-value=1.7e-17  Score=142.84  Aligned_cols=149  Identities=19%  Similarity=0.254  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----cc---ccccccCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DH---VPIACKDAV  173 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----~~---~~~~~~~ad  173 (284)
                      +|+++|.+|+|||||++++.+.... ..++.++.+.....+.+++.  .+++|||+|+.+..    ..   ...+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999998754 55564445555666667664  57899999986543    11   224689999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHHHH-----------------------------------------HhH---C-------
Q 023316          174 AILFMFDLTSRC-TLNSIVGWYSEA-----------------------------------------RKW---N-------  201 (284)
Q Consensus       174 ~iilv~d~~~~~-s~~~~~~~~~~l-----------------------------------------~~~---~-------  201 (284)
                      ++++|+|+++++ ..+.+.+.++..                                         +++   +       
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 333332222110                                         011   0       


Q ss_pred             ---------------CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          202 ---------------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       202 ---------------~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                                     ...|.++|+||+|+.   +       .+++..+++.  ..++++||+++.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~---~-------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI---S-------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCC---C-------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                           012337999999961   1       2334455543  4689999999999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.76  E-value=6.7e-18  Score=164.60  Aligned_cols=159  Identities=12%  Similarity=0.084  Sum_probs=109.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccc--eeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAG--LNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ...+|+++|+.++|||||+++|.+..+. ....+++  ...+...+..++....+.+|||+|++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4578999999999999999999988776 3333332  223333444445567889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCC
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHN  250 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~a~~~~--~~~~~~Sa~~~  250 (284)
                      |+|+|+++....+....|. .+..  ...|.|+++||+|+.    ........++...   +...++  ++++++||++|
T Consensus       323 ILVVDA~dGv~~QT~E~I~-~~k~--~~iPiIVViNKiDl~----~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAIN-YIQA--ANVPIIVAINKIDKA----NANTERIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEECcCCCChhhHHHHH-HHHh--cCceEEEEEECCCcc----ccCHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            9999998753333222221 2221  234558999999962    2111111222221   133344  68999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      .|++++|+++....
T Consensus       396 ~GIdeLle~I~~l~  409 (742)
T CHL00189        396 TNIDKLLETILLLA  409 (742)
T ss_pred             CCHHHHHHhhhhhh
Confidence            99999999988754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.76  E-value=6.7e-18  Score=157.92  Aligned_cols=148  Identities=20%  Similarity=0.239  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC--------CcccccccccC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACKD  171 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~--------~~~~~~~~~~~  171 (284)
                      ||+++|.+|||||||+|+|++.+..  ...++++.+.....+.+++..  +.+|||+|...        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999998754  556666666666666777754  78999999743        33445567899


Q ss_pred             CcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCC
Q 023316          172 AVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSAT  248 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~  248 (284)
                      +|++++|+|..+..+..+  +..|+.+   .  ..|.|+|+||+|+.    ....     ...+ ...+++ +++++||+
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~~---~--~~piilVvNK~D~~----~~~~-----~~~~-~~~lg~~~~~~vSa~  143 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLRK---S--GKPVILVANKIDGK----KEDA-----VAAE-FYSLGFGEPIPISAE  143 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHH---h--CCCEEEEEECccCC----cccc-----cHHH-HHhcCCCCeEEEeCC
Confidence            999999999987655433  3344432   2  45668999999962    1111     1122 234566 79999999


Q ss_pred             CCcCHHHHHHHHHHHHhC
Q 023316          249 HNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~  266 (284)
                      +|.|++++++++...+..
T Consensus       144 ~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       144 HGRGIGDLLDAILELLPE  161 (429)
T ss_pred             cCCChHHHHHHHHHhcCc
Confidence            999999999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.76  E-value=1.7e-17  Score=163.14  Aligned_cols=158  Identities=10%  Similarity=0.047  Sum_probs=109.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ..+...|+++|+.++|||||+++|.+..+. ....+++.+.....+.+++  ..+.||||+|++.|..++..+++.+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            345678999999999999999999987776 3333444444444555665  4577999999999999999899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHH---HHHHHcC--CcEEEEcCCCC
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR---AYAKAMK--ATLFFSSATHN  250 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~---~~a~~~~--~~~~~~Sa~~~  250 (284)
                      |+|||+++...-+....|. .+.  ....|+|+++||+|+.    ......+..+..   .++..++  ++++++||++|
T Consensus       365 ILVVdAddGv~~qT~e~i~-~a~--~~~vPiIVviNKiDl~----~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAIN-HAK--AAGVPIIVAINKIDKP----GANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhHHHHHH-HHH--hcCCcEEEEEECcccc----ccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            9999998743222222221 121  1234558999999962    211111122221   2234444  78999999999


Q ss_pred             cCHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAK  263 (284)
Q Consensus       251 ~~v~~lf~~l~~~  263 (284)
                      .|++++|+++...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999998753

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.76  E-value=2e-17  Score=144.76  Aligned_cols=207  Identities=17%  Similarity=0.162  Sum_probs=142.3

Q ss_pred             HHHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceeeEEE----EEcCCCCChHHHH
Q 023316           42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKIS----LLGDCQIGKTSFV  117 (284)
Q Consensus        42 ~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~----llG~~~vGKSsLl  117 (284)
                      -.+++++|.+|.+|.++.+..++...     +|.....|...         +...-..++|++    +||.||+|||||+
T Consensus       111 ~gq~~~~akGG~GG~GN~~Fks~~nr-----AP~~a~~G~~G---------e~r~v~LELKllADVGLVG~PNaGKSTll  176 (369)
T COG0536         111 HGQRFLVAKGGRGGLGNAHFKSSVNR-----APRFATPGEPG---------EERDLRLELKLLADVGLVGLPNAGKSTLL  176 (369)
T ss_pred             CCcEEEEEcCCCCCccchhhcCcccC-----CcccCCCCCCC---------ceEEEEEEEeeecccccccCCCCcHHHHH
Confidence            35678999999999999777666554     34444444333         222223456655    9999999999999


Q ss_pred             HHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----cccccccc---cCCcEEEEEEeCCChh---h
Q 023316          118 VKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPIAC---KDAVAILFMFDLTSRC---T  186 (284)
Q Consensus       118 ~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~~~~~~~~---~~ad~iilv~d~~~~~---s  186 (284)
                      +.+...+.. ..|+-|+..-.-..+.+ ...-.|.+-|.+|.-+-    ..+-..|+   ..+.++++|.|++..+   .
T Consensus       177 s~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp  255 (369)
T COG0536         177 SAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDP  255 (369)
T ss_pred             HHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCH
Confidence            999999988 88883333322334444 23334779999997552    34555565   4789999999998654   5


Q ss_pred             HHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE-EcCCCCcCHHHHHHHHHH
Q 023316          187 LNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMA  262 (284)
Q Consensus       187 ~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~Sa~~~~~v~~lf~~l~~  262 (284)
                      .+++.....+|.+|.+   +.|.+||+||+|+    +.. ....+.....+.+..+...+. +||.+++|++++...+.+
T Consensus       256 ~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~----~~~-~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~  330 (369)
T COG0536         256 IEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL----PLD-EEELEELKKALAEALGWEVFYLISALTREGLDELLRALAE  330 (369)
T ss_pred             HHHHHHHHHHHHHhhHHhccCceEEEEeccCC----CcC-HHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHH
Confidence            7888888888888854   5566999999994    221 111133344445555544332 999999999999999988


Q ss_pred             HHhCCc
Q 023316          263 KLFNLP  268 (284)
Q Consensus       263 ~i~~~~  268 (284)
                      .+.+.+
T Consensus       331 ~l~~~~  336 (369)
T COG0536         331 LLEETK  336 (369)
T ss_pred             HHHHhh
Confidence            887665

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.75  E-value=2.5e-17  Score=162.57  Aligned_cols=153  Identities=18%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC--------cccccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--------~~~~~~~~  169 (284)
                      ..+|+++|.+|||||||+|+|++.+..  ...++++.+........++.  .+.+|||+|.+..        ......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT--DFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE--EEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            478999999999999999999988754  55565555555555555554  4779999998742        22334568


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      +.+|++|+|+|+++.-+..+ ..|.+.++.  ...|.|+|+||+|+.    ..  .  ......+....+ ..+++||++
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~----~~--~--~~~~~~~~lg~~-~~~~iSA~~  420 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQ----AS--E--YDAAEFWKLGLG-EPYPISAMH  420 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccc----cc--h--hhHHHHHHcCCC-CeEEEECCC
Confidence            89999999999986433221 245555543  245668999999962    11  1  111222222222 457899999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023316          250 NINVNKIFKFIMAKLFN  266 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~  266 (284)
                      |.||+++|++++..+.+
T Consensus       421 g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        421 GRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCchHHHHHHHHhccc
Confidence            99999999999998855

>cd00880 Era_like Era (E

Probab=99.75  E-value=2.9e-17  Score=130.78  Aligned_cols=152  Identities=14%  Similarity=0.123  Sum_probs=102.6

Q ss_pred             EEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc-------ccccCCcEE
Q 023316          105 LLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------IACKDAVAI  175 (284)
Q Consensus       105 llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~-------~~~~~ad~i  175 (284)
                      ++|.+|+|||||++++.+....  ....+...+.........+ ...+.+|||+|...+.....       .+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987655  2333333333333333331 45688999999987654433       477899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHH-HHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      ++|+|..+..+..... |......  ...|.++|+||+|+.   .+.......+ .........+++++++||+++.|++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~  153 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLL---PEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID  153 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccC---ChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence            9999999988766654 3333322  244558999999962   2211111000 1223334446899999999999999


Q ss_pred             HHHHHHHHH
Q 023316          255 KIFKFIMAK  263 (284)
Q Consensus       255 ~lf~~l~~~  263 (284)
                      ++++++.+.
T Consensus       154 ~l~~~l~~~  162 (163)
T cd00880         154 ELREALIEA  162 (163)
T ss_pred             HHHHHHHhh
Confidence            999998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG1159 Era GTPase [General function prediction only]

Probab=99.75  E-value=4.8e-17  Score=140.53  Aligned_cols=173  Identities=19%  Similarity=0.206  Sum_probs=121.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------ccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIA  168 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~~~  168 (284)
                      ..--|+++|.||||||||+|+++|.+..  +..+.++.+.....++.+  ..++.+.||+|..+-..        .....
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            4567999999999999999999999977  555644444444444444  45677999999876322        23345


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSA  247 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa  247 (284)
                      +.++|++++|.|++....-.+ ...++.++.  ...|+|++.||+|.   ..++. . .......+..... ...+.+||
T Consensus        83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~--~~~pvil~iNKID~---~~~~~-~-l~~~~~~~~~~~~f~~ivpiSA  154 (298)
T COG1159          83 LKDVDLILFVVDADEGWGPGD-EFILEQLKK--TKTPVILVVNKIDK---VKPKT-V-LLKLIAFLKKLLPFKEIVPISA  154 (298)
T ss_pred             hccCcEEEEEEeccccCCccH-HHHHHHHhh--cCCCeEEEEEcccc---CCcHH-H-HHHHHHHHHhhCCcceEEEeec
Confidence            789999999999987544221 233445544  34567899999995   22211 0 1222222333333 36888999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCccccccccCCCCCC
Q 023316          248 THNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPI  281 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~  281 (284)
                      ++|.|++.+.+.+...+.+.+|.......++.|.
T Consensus       155 ~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~  188 (298)
T COG1159         155 LKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPE  188 (298)
T ss_pred             cccCCHHHHHHHHHHhCCCCCCcCChhhccCChH
Confidence            9999999999999999999999998888777663

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.75  E-value=2.5e-17  Score=133.08  Aligned_cols=151  Identities=15%  Similarity=0.190  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----------Cccccccccc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIACK  170 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----------~~~~~~~~~~  170 (284)
                      +|+++|++|+|||||++.++++.+. ...++.+.+.....+..++   .+.+|||+|...          +......|+.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            4899999999999999999976655 3334545444444444443   688999999543          2333444544


Q ss_pred             ---CCcEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH--HcCCcEE
Q 023316          171 ---DAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--AMKATLF  243 (284)
Q Consensus       171 ---~ad~iilv~d~~~~~s--~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~--~~~~~~~  243 (284)
                         ..+++++++|.++..+  ...+..|+...     ..|.++|+||+|+   ..+..............+  ....+++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~---~~~~~~~~~~~~~~~~l~~~~~~~~~~  149 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADK---LKKSELAKALKEIKKELKLFEIDPPII  149 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhc---CChHHHHHHHHHHHHHHHhccCCCceE
Confidence               4578899999876633  23344565442     2455799999996   222222222333333333  3456889


Q ss_pred             EEcCCCCcCHHHHHHHHHHH
Q 023316          244 FSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       244 ~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      ++||+++.|+.++++++.+.
T Consensus       150 ~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         150 LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EEecCCCCCHHHHHHHHHHh
Confidence            99999999999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2.9e-18  Score=131.89  Aligned_cols=160  Identities=19%  Similarity=0.220  Sum_probs=121.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+.+|.++|-.|+|||+++.++.-.+.....||+|.+..  ++.+  +++.+++||.+|+-..+..|+.||.+.|++|+|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve--~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE--TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc--cccc--ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            578999999999999999999988888788899997754  3333  668899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhHC-CCCceEEEEeCCCCCCCCCCCcccch--HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          179 FDLTSRCTLNSIV-GWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTI--ATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       179 ~d~~~~~s~~~~~-~~~~~l~~~~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|.+|++...... .++..+.+.. ..+..+|++||.|.    +....+..  ..-...-.+..-+.++++||.+|+|++
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~----~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY----SGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc----hhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            9999998766554 3444444332 34555799999993    33221111  111111122334789999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023316          255 KIFKFIMAKLFN  266 (284)
Q Consensus       255 ~lf~~l~~~i~~  266 (284)
                      ++++|+.+.+..
T Consensus       169 ~~~DWL~~~l~~  180 (182)
T KOG0072|consen  169 PAMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.74  E-value=3.8e-17  Score=157.74  Aligned_cols=158  Identities=13%  Similarity=0.187  Sum_probs=114.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC--CC---------Ccc---cccceeeeeEEEEE-----CCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~--~~---------~~~---~t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~e~  160 (284)
                      ..+|+++|+.++|||||+.+|+...  +.         +..   .+.|.++....+.+     ++..+.+.+|||+|+++
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            3489999999999999999997631  11         111   13355554443332     56678999999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA  240 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~  240 (284)
                      |...+..+++.+|++|+|+|+++....+....|.....   .+.+.|+|+||+|+    +....   .....++.+.+++
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl----~~a~~---~~v~~ei~~~lg~  156 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDL----PAADP---ERVKQEIEDVIGI  156 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCC----CcccH---HHHHHHHHHHhCC
Confidence            99889999999999999999998777666666654432   23455899999996    22111   2223344444555


Q ss_pred             c---EEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          241 T---LFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       241 ~---~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      .   ++++||++|.|++++|+++...+...
T Consensus       157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        157 DASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             CcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            4   89999999999999999999887543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.74  E-value=7.1e-17  Score=159.32  Aligned_cols=152  Identities=13%  Similarity=0.054  Sum_probs=111.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc----------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPIA  168 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~----------~~~~  168 (284)
                      .++|+++|.+|||||||+|++++.+.. .+.+.++.+.....+..  ....+.+|||+|...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            578999999999999999999988765 55565555544444443  4456789999999887542          2224


Q ss_pred             c--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          169 C--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       169 ~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      +  ..+|++++|+|.++.+.-   ..|..++.+.  ..|.|++.||+|+.    +  ++....+.+++.+.+|++++++|
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~----~--~~~i~id~~~L~~~LG~pVvpiS  149 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIA----E--KQNIRIDIDALSARLGCPVIPLV  149 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhh----h--ccCcHHHHHHHHHHhCCCEEEEE
Confidence            3  489999999999886542   2344455443  34558999999952    1  22234566788889999999999


Q ss_pred             CCCCcCHHHHHHHHHHHH
Q 023316          247 ATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i  264 (284)
                      |++|+|++++.+.+....
T Consensus       150 A~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        150 STRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             eecCCCHHHHHHHHHHhh
Confidence            999999999999887654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.73  E-value=8.6e-17  Score=146.20  Aligned_cols=148  Identities=19%  Similarity=0.214  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc---------ccccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIAC  169 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~---------~~~~~~~  169 (284)
                      ..|+++|.||||||||.|||++.+..  +++|.++.|-......+.+..  |.+.||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            46999999999999999999999977  888988888777778888866  7799999988533         1233467


Q ss_pred             cCCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023316          170 KDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS  246 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~S  246 (284)
                      ..||++|||+|....-+-+  .+.+|+.     ....|.|||+||+|-    .     ..++...+|. ++|. +.+.+|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~----~-----~~e~~~~efy-slG~g~~~~IS  146 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDN----L-----KAEELAYEFY-SLGFGEPVPIS  146 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccC----c-----hhhhhHHHHH-hcCCCCceEee
Confidence            8999999999997644432  2334433     224566899999992    1     1123333333 3454 788899


Q ss_pred             CCCCcCHHHHHHHHHHHHh
Q 023316          247 ATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~  265 (284)
                      |.+|.|+.++++.++..+.
T Consensus       147 A~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         147 AEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             hhhccCHHHHHHHHHhhcC
Confidence            9999999999999999883

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.72  E-value=1.2e-17  Score=154.53  Aligned_cols=165  Identities=21%  Similarity=0.236  Sum_probs=122.0

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ....++|+|+|+.|||||||+..++.++|....|..-..+..- ..+....+...+.||+..+.-+.....-++.||++.
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            4457999999999999999999999999986665443222111 223344455779999877666555567789999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHC---CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-C-cEEEEcCCCC
Q 023316          177 FMFDLTSRCTLNSIV-GWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-A-TLFFSSATHN  250 (284)
Q Consensus       177 lv~d~~~~~s~~~~~-~~~~~l~~~~---~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~-~~~~~Sa~~~  250 (284)
                      ++|++++++|++.+. .|+..+++..   .+.|+||||||+|+...-..    ..+....-+..++. + ..++|||++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----s~e~~~~pim~~f~EiEtciecSA~~~  160 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----SDEVNTLPIMIAFAEIETCIECSALTL  160 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----chhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence            999999999999997 8999999987   56677999999997422221    11222333333332 3 5788999999


Q ss_pred             cCHHHHHHHHHHHHhC
Q 023316          251 INVNKIFKFIMAKLFN  266 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~  266 (284)
                      .|+.|+|....+.++.
T Consensus       161 ~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  161 ANVSELFYYAQKAVIH  176 (625)
T ss_pred             hhhHhhhhhhhheeec
Confidence            9999999998877654

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.72  E-value=5.4e-17  Score=151.60  Aligned_cols=156  Identities=15%  Similarity=0.107  Sum_probs=99.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--C------------------------------cccccceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--R------------------------------SLQMAGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~------------------------------~~~t~~~~~~~~~~~~~~  145 (284)
                      ...++|+++|.+++|||||+++|+...-.  .                              ..+.++.+.....  +..
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~--~~~   81 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK--FET   81 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--Eec
Confidence            34799999999999999999999843211  0                              0122333333333  333


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ  224 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~  224 (284)
                      ..+.+.+|||+|+++|.......++.+|++|+|+|++++.++.... .++..+.. ....+.|+++||+|+... +++..
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~~~-~~~~~  159 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAVNY-DEKRY  159 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccccc-cHHHH
Confidence            4567889999999988765555678999999999998732222211 22222222 222234789999996210 00111


Q ss_pred             cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023316          225 WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF  257 (284)
Q Consensus       225 ~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~lf  257 (284)
                      ....++...+++..+     ++++++||++|+|+++.+
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            123456666666665     468999999999998754

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.71  E-value=4.9e-17  Score=151.93  Aligned_cols=157  Identities=12%  Similarity=0.038  Sum_probs=103.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC--CCCC------------------------------cccccceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER------------------------------SLQMAGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~  145 (284)
                      ...++|+++|..++|||||+.+|+..  ....                              ...+++.+.....+  ..
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~--~~   82 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF--ET   82 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE--cc
Confidence            34789999999999999999999752  1110                              01133444443343  33


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ  224 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~-~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~  224 (284)
                      ..+.+.+|||+|+++|.......++.+|++|+|+|+++.+++..... +...+.+.....+.|+++||+|+.+. .++..
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~-~~~~~  161 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNY-DEEEF  161 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCc-cHHHH
Confidence            44678999999999987666667889999999999998864322111 11112222222334789999997311 11111


Q ss_pred             cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023316          225 WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF  257 (284)
Q Consensus       225 ~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~lf  257 (284)
                      ....++++.+++..+     ++++++||++|.|+.+.+
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            223566777787765     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.5e-17  Score=131.93  Aligned_cols=161  Identities=19%  Similarity=0.197  Sum_probs=118.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCC---C-----CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQ---E-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK  170 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~---~-----~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~  170 (284)
                      ..+-|+++|..++|||||+.+......   .     .-.+|.|.+..  ++.+++  ..+.+||.+||+..+++|..||.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVCN--APLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence            367899999999999999998754321   1     23346676655  455554  44779999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHc---CCcEEEE
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAM---KATLFFS  245 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~---~~~~~~~  245 (284)
                      .++++|+++|.++++-|+....-++.+..+ .....| ++.+||.|+.    ........+.....++..   ..++..+
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q----~~~~~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQ----NAMEAAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhh----hhhhHHHHHHHhhhhhhcCCccCccccc
Confidence            999999999999999999887666666554 234455 6899999962    211111122222223433   3578889


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCC
Q 023316          246 SATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ||.+|+||++...|++..+..+
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999988655

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.71  E-value=1.1e-16  Score=153.64  Aligned_cols=157  Identities=14%  Similarity=0.116  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcc-----cccceeeeeEEEE------------ECCeEEEEEEEeCCCCcCCcc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLM------------VQGARIAFSIWDVGGDSRSFD  163 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~-----~t~~~~~~~~~~~------------~~~~~~~l~l~Dt~G~e~~~~  163 (284)
                      .-|+++|++++|||||+++|.+..+....     +++|..+......            ++.....+.+|||+|++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            46999999999999999999988776222     2334433322110            001112378999999999999


Q ss_pred             cccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc----------cc-chHH
Q 023316          164 HVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------QW-TIAT  229 (284)
Q Consensus       164 ~~~~~~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~----------~~-~~~~  229 (284)
                      ++..+++.+|++++|||+++   +.+++.+..+    +.  ...|.|+++||+|+........          +. .+..
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            99999999999999999987   4555544322    21  2345589999999742211000          00 0000


Q ss_pred             --------HHHHHHH------------Hc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          230 --------QARAYAK------------AM--KATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       230 --------~~~~~a~------------~~--~~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                              ...++++            .+  .++++.+||++|+|+++++.++...
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                    0111111            11  3688999999999999999988643

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.71  E-value=1.6e-16  Score=144.84  Aligned_cols=152  Identities=16%  Similarity=0.206  Sum_probs=113.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc--------ccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP--------IAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~--------~~~  169 (284)
                      -+|++++|.||||||||+|.|.+.+..  .+.+.++.|+....+.++|..  +.+.||+|..+-.....        ..+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            589999999999999999999998866  888999999999999999965  66999999987554332        357


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      ..||.+++|+|.+.+.+-.+.. .+.   ....+.+.++|.||.||.....          .....-..+.+++.+||++
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~-~~~---~~~~~~~~i~v~NK~DL~~~~~----------~~~~~~~~~~~~i~iSa~t  360 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLA-LIE---LLPKKKPIIVVLNKADLVSKIE----------LESEKLANGDAIISISAKT  360 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHH-HHH---hcccCCCEEEEEechhcccccc----------cchhhccCCCceEEEEecC
Confidence            8999999999999863322221 111   1233455589999999731111          1111112245789999999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023316          250 NINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~  267 (284)
                      |+|++++.+.+.+.+...
T Consensus       361 ~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         361 GEGLDALREAIKQLFGKG  378 (454)
T ss_pred             ccCHHHHHHHHHHHHhhc
Confidence            999999999988877655

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.70  E-value=1e-16  Score=123.05  Aligned_cols=157  Identities=16%  Similarity=0.200  Sum_probs=119.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..++||.++|-.++|||||+..+.+.....-.+|.|++..  .+.++| .+.+.+||.+||...+..|..||.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k--~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTK--KVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceE--EEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            4589999999999999999999998887777788897654  555554 4788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHH----HHHHcCCcEEEEcCCCCc
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARA----YAKAMKATLFFSSATHNI  251 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~a~~~~~~~~~~Sa~~~~  251 (284)
                      |.|.+|+.-|+++..-+-++.+. .....| .+-+||.||.-+.+      .++.+..    ..+..-+.+.++||.+++
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~------~eeia~klnl~~lrdRswhIq~csals~e  165 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK------VEEIALKLNLAGLRDRSWHIQECSALSLE  165 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc------hHHHHHhcchhhhhhceEEeeeCcccccc
Confidence            99999999999887666665443 234455 47799999621111      1122211    112223567789999999


Q ss_pred             CHHHHHHHHHHH
Q 023316          252 NVNKIFKFIMAK  263 (284)
Q Consensus       252 ~v~~lf~~l~~~  263 (284)
                      ++.+-.+|+...
T Consensus       166 g~~dg~~wv~sn  177 (185)
T KOG0074|consen  166 GSTDGSDWVQSN  177 (185)
T ss_pred             CccCcchhhhcC
Confidence            999888887643

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.70  E-value=4.5e-16  Score=134.82  Aligned_cols=199  Identities=15%  Similarity=0.150  Sum_probs=134.7

Q ss_pred             HHHHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceeeE----EEEEcCCCCChHHH
Q 023316           41 FIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLK----ISLLGDCQIGKTSF  116 (284)
Q Consensus        41 ~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K----I~llG~~~vGKSsL  116 (284)
                      ...+++++|.+|-+|.++...++-...+     |.....|...         +...-..++|    |-+||.||+|||||
T Consensus       147 ~~~~~~i~arGG~GG~gn~~fls~~~r~-----p~~~~~G~~G---------~e~~~~lELKsiadvGLVG~PNAGKSTL  212 (366)
T KOG1489|consen  147 KEGDRVIAARGGEGGKGNKFFLSNENRS-----PKFSKPGLNG---------EERVIELELKSIADVGLVGFPNAGKSTL  212 (366)
T ss_pred             cCCcEEEEeecCCCCccceeeccccccC-----cccccCCCCC---------ceEEEEEEeeeecccceecCCCCcHHHH
Confidence            3466789999998876554433311111     1111111111         1111123455    44999999999999


Q ss_pred             HHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----cccccccc---cCCcEEEEEEeCCCh---h
Q 023316          117 VVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPIAC---KDAVAILFMFDLTSR---C  185 (284)
Q Consensus       117 l~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~~~~~~~~---~~ad~iilv~d~~~~---~  185 (284)
                      ++++...+.. ..|+-|++.-...++.+++-. .+.+-|.+|.-+-    +.+-..|+   ..|+..++|.|++..   .
T Consensus       213 L~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~  291 (366)
T KOG1489|consen  213 LNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRN  291 (366)
T ss_pred             HHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCC
Confidence            9999999888 778844444444455555433 3789999997653    34555565   478999999999988   8


Q ss_pred             hHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCHHHHHHHHH
Q 023316          186 TLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINVNKIFKFIM  261 (284)
Q Consensus       186 s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~~~~v~~lf~~l~  261 (284)
                      .++.++.+..++..+..   +.|.++|+||+|+    ++.    ..+.+.++++...-+ ++.+||++++|+.++.+.|-
T Consensus       292 p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~----~ea----e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr  363 (366)
T KOG1489|consen  292 PWQQLQLLIEELELYEKGLADRPALIVANKIDL----PEA----EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLR  363 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhhccCceEEEEeccCc----hhH----HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHh
Confidence            89999988888877753   4566899999994    221    123357777777544 89999999999999988765


Q ss_pred             H
Q 023316          262 A  262 (284)
Q Consensus       262 ~  262 (284)
                      .
T Consensus       364 ~  364 (366)
T KOG1489|consen  364 E  364 (366)
T ss_pred             h
Confidence            4

>PRK10218 GTP-binding protein; Provisional

Probab=99.69  E-value=5.6e-16  Score=149.20  Aligned_cols=161  Identities=15%  Similarity=0.134  Sum_probs=115.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc--CCCCCc-------------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~--~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~  164 (284)
                      ..+|+++|+.++|||||+.+|+.  +.+...             ..+.|.++..+...+....+.+.+|||+|+.+|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999986  333211             124567777776666666788999999999999999


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-------H
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------A  237 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-------~  237 (284)
                      +..+++.+|++|+|+|+++....+. ..++..+..  ...|+|++.||+|+.    ......+.++...+..       .
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~--~gip~IVviNKiD~~----~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA--YGLKPIVVINKVDRP----GARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH--cCCCEEEEEECcCCC----CCchhHHHHHHHHHHhccCccccc
Confidence            9999999999999999987543333 333333333  244568999999953    2222223344444432       2


Q ss_pred             cCCcEEEEcCCCCc----------CHHHHHHHHHHHHhCC
Q 023316          238 MKATLFFSSATHNI----------NVNKIFKFIMAKLFNL  267 (284)
Q Consensus       238 ~~~~~~~~Sa~~~~----------~v~~lf~~l~~~i~~~  267 (284)
                      ..++++.+||.+|.          ++..+|+.++..+...
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            34779999999998          5889999888877544

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.69  E-value=4.2e-16  Score=133.02  Aligned_cols=172  Identities=19%  Similarity=0.197  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcc-----cccccccCCcEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFD-----HVPIACKDAVAI  175 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~-----~~~~~~~~ad~i  175 (284)
                      ||+++|..++||||+.+.+.++-...+....|.+.....-.+ ....+.+++||++||..+-.     .....++++.++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            899999999999999888877654433332232222222222 23346789999999987643     356678999999


Q ss_pred             EEEEeCCChhh---HHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch----HHHHHHHHHHcC---CcEEEE
Q 023316          176 LFMFDLTSRCT---LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKAMK---ATLFFS  245 (284)
Q Consensus       176 ilv~d~~~~~s---~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~a~~~~---~~~~~~  245 (284)
                      |+|+|+.+.+-   +..+...++.+.+++++...-+..+|+|+   ++++.+...    .+...+.+...+   +.++.|
T Consensus        81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~---l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T  157 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDL---LSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT  157 (232)
T ss_dssp             EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCC---S-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred             EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc---CCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence            99999985543   34445677778888888777799999997   554443332    344455555666   788999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCCccccccccCC
Q 023316          246 SATHNINVNKIFKFIMAKLFNLPWTVKRNLTI  277 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~  277 (284)
                      |..+ +.+-++|..+++.+.......|+.++.
T Consensus       158 SI~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~  188 (232)
T PF04670_consen  158 SIWD-ESLYEAWSKIVQKLIPNLSTLENLLNN  188 (232)
T ss_dssp             -TTS-THHHHHHHHHHHTTSTTHCCCCCCCCH
T ss_pred             cCcC-cHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            9986 689999999999999888888877653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.69  E-value=1.3e-16  Score=135.08  Aligned_cols=149  Identities=13%  Similarity=0.063  Sum_probs=93.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-Cc-------------------------------ccccceeeeeEEEEECCeEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RS-------------------------------LQMAGLNLINKTLMVQGARIA  149 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~-------------------------------~~t~~~~~~~~~~~~~~~~~~  149 (284)
                      +|+++|.+|+|||||+++|+...-. ..                               ...+..+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            5899999999999999999753211 10                               01222333333333344  45


Q ss_pred             EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchH
Q 023316          150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIA  228 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~  228 (284)
                      +.+|||+|+++|.......++.+|++|+|+|+++...-+.. .+...+.. . ..++ |+|.||+|+... ..+......
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~-~-~~~~iIvviNK~D~~~~-~~~~~~~i~  154 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSL-L-GIRHVVVAVNKMDLVDY-SEEVFEEIV  154 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHH-c-CCCcEEEEEEchhcccC-CHHHHHHHH
Confidence            77999999998866556678999999999999875432221 11122222 2 2244 678999996211 001011224


Q ss_pred             HHHHHHHHHcCC---cEEEEcCCCCcCHHHH
Q 023316          229 TQARAYAKAMKA---TLFFSSATHNINVNKI  256 (284)
Q Consensus       229 ~~~~~~a~~~~~---~~~~~Sa~~~~~v~~l  256 (284)
                      .+.+++++.++.   +++.+||++|.|+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            556666777764   5899999999999754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=2.1e-15  Score=121.34  Aligned_cols=155  Identities=17%  Similarity=0.191  Sum_probs=114.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC---------C-cc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE---------R-SL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD  163 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~---------~-~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~  163 (284)
                      .....||+|.|..++||||++.++......         . ..   .|+..|+..  +.+++ ...+++++|+||++|+-
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~~-~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDE-DTGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEcC-cceEEEecCCCcHHHHH
Confidence            456789999999999999999999876631         0 11   244455543  33333 23477999999999999


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-HH-cCCc
Q 023316          164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-KA-MKAT  241 (284)
Q Consensus       164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-~~-~~~~  241 (284)
                      +|..+++++.+.|++.|.+.+..+ .....++-+...++ .|.++.+||.||++..++       ++.+++. .. ...+
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~pp-------e~i~e~l~~~~~~~~  154 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-IPVVVAINKQDLFDALPP-------EKIREALKLELLSVP  154 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-CCEEEEeeccccCCCCCH-------HHHHHHHHhccCCCc
Confidence            999999999999999999999998 44455555544333 333688999998655443       2233333 33 4789


Q ss_pred             EEEEcCCCCcCHHHHHHHHHHH
Q 023316          242 LFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       242 ~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      .++++|.+++++.+.++.+...
T Consensus       155 vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         155 VIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeeeecccchhHHHHHHHHHhh
Confidence            9999999999999999888766

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.67  E-value=4.5e-16  Score=144.42  Aligned_cols=163  Identities=14%  Similarity=0.157  Sum_probs=102.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC---Ccc-c--ccceeeee----------------EEEEECC------eEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE---RSL-Q--MAGLNLIN----------------KTLMVQG------ARIAF  150 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~~-~--t~~~~~~~----------------~~~~~~~------~~~~l  150 (284)
                      ..++|+++|..++|||||+.++.+....   ... .  |+...+..                .....++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            4689999999999999999999754221   111 0  11111110                0000011      13568


Q ss_pred             EEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHH
Q 023316          151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ  230 (284)
Q Consensus       151 ~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~  230 (284)
                      .+|||+|+++|...+......+|++|+|+|+++..........+..+.. ....+.|+++||+|+.   +.+......++
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl~---~~~~~~~~~~~  158 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDLV---SKEKALENYEE  158 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEccccC---CHHHHHHHHHH
Confidence            8999999999987777777889999999999864311111222222222 2223447899999962   22111112344


Q ss_pred             HHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          231 ARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       231 ~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      ...+.+..   +++++++||++|+|+++++++|...+.
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            45555443   678999999999999999999988664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.67  E-value=4.8e-16  Score=129.45  Aligned_cols=158  Identities=13%  Similarity=0.128  Sum_probs=105.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-Cc------------------ccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS------------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~------------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      .++|+++|..++|||||+.+|+...-. ..                  ......+.....+..+.....+.++||+|+..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            578999999999999999999754321 10                  01112222233333113446688999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHH-HHHHHcC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR-AYAKAMK  239 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~a~~~~  239 (284)
                      |.......++.+|++|+|+|+.+.-..... ..+..+...  +.|.|++.||+|+.    ........++.. .+.+..+
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~--~~p~ivvlNK~D~~----~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILREL--GIPIIVVLNKMDLI----EKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHT--T-SEEEEEETCTSS----HHHHHHHHHHHHHHHHHHTT
T ss_pred             eeecccceecccccceeeeecccccccccc-ccccccccc--ccceEEeeeeccch----hhhHHHHHHHHHHHhccccc
Confidence            887777788999999999999876543332 223333332  33468999999962    211112223333 4544442


Q ss_pred             ------CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          240 ------ATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       240 ------~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                            ++++.+||.+|.|++++++.+.+.+
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence                  4699999999999999999998765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.67  E-value=8e-16  Score=148.20  Aligned_cols=159  Identities=14%  Similarity=0.176  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC--CCCCc-------------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN--EQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP  166 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~--~~~~~-------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~  166 (284)
                      +|+++|+.++|||||+.+|+..  .+...             ....|.++..+...+......+.+|||+|+++|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            6999999999999999999862  22211             11235555555444444457788999999999998888


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-------HcC
Q 023316          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AMK  239 (284)
Q Consensus       167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-------~~~  239 (284)
                      .+++.+|++|+|+|+++.. ......|+..+...  ..|+|+++||+|+    +......+.++...+..       +..
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~----~~a~~~~v~~ei~~l~~~~g~~~e~l~  155 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDR----PSARPDEVVDEVFDLFAELGADDEQLD  155 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCC----CCcCHHHHHHHHHHHHHhhcccccccc
Confidence            9999999999999998643 34445666666553  3456899999995    22222223344444432       235


Q ss_pred             CcEEEEcCCCCc----------CHHHHHHHHHHHHhCC
Q 023316          240 ATLFFSSATHNI----------NVNKIFKFIMAKLFNL  267 (284)
Q Consensus       240 ~~~~~~Sa~~~~----------~v~~lf~~l~~~i~~~  267 (284)
                      ++++.+||++|.          |+..+|+.++..+...
T Consensus       156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            789999999995          7999999999887544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04167 Snu114p Snu114p subfamily

Probab=99.66  E-value=4.9e-16  Score=131.98  Aligned_cols=150  Identities=19%  Similarity=0.298  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCc-----------c-------cccceeeeeEEEEE-----CCeEEEEEEEeCCCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERS-----------L-------QMAGLNLINKTLMV-----QGARIAFSIWDVGGD  158 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~-----------~-------~t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~  158 (284)
                      +|+++|+.++|||||+.+|+.......           +       ...|..+....+.+     ++..+.+.+|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999987543311           0       11233332222222     356788999999999


Q ss_pred             cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCC---CCCCCc--c--cchHHHH
Q 023316          159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV---RLPPDL--Q--WTIATQA  231 (284)
Q Consensus       159 e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~---~~~~~~--~--~~~~~~~  231 (284)
                      ++|......++..+|++|+|+|+++..++.. ..|+..+...  ..|.++|+||+|+..   .++...  .  ....++.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~  158 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV  158 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence            9998888889999999999999988776643 3455544332  345589999999620   011111  0  0113344


Q ss_pred             HHHHHHcCC-------c----EEEEcCCCCcCHH
Q 023316          232 RAYAKAMKA-------T----LFFSSATHNINVN  254 (284)
Q Consensus       232 ~~~a~~~~~-------~----~~~~Sa~~~~~v~  254 (284)
                      ..+++.++.       |    +++.|++.+-++.
T Consensus       159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            455555433       2    6778998776543

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.66  E-value=1.3e-15  Score=147.41  Aligned_cols=154  Identities=15%  Similarity=0.127  Sum_probs=103.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC---CCCCc-ccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN---EQERS-LQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~---~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      -|.++|+.++|||||+++|.+.   .+... ...++.+.....+.. ++.  .+.+|||+|+++|.......+.++|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            4789999999999999999863   33322 223333333223323 333  3789999999998766666788999999


Q ss_pred             EEEeCCCh---hhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC---CcEEEEcCCC
Q 023316          177 FMFDLTSR---CTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK---ATLFFSSATH  249 (284)
Q Consensus       177 lv~d~~~~---~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~Sa~~  249 (284)
                      +|+|+++.   .+.+.+    ..+.. . ..+. |+|+||+|+.   +++......++..++....+   ++++++||++
T Consensus        80 LVVda~eg~~~qT~ehl----~il~~-l-gi~~iIVVlNKiDlv---~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t  150 (614)
T PRK10512         80 LVVACDDGVMAQTREHL----AILQL-T-GNPMLTVALTKADRV---DEARIAEVRRQVKAVLREYGFAEAKLFVTAATE  150 (614)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH-c-CCCeEEEEEECCccC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence            99999873   333332    22222 1 2343 6999999962   22211222455666665554   6899999999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023316          250 NINVNKIFKFIMAKLFN  266 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~  266 (284)
                      |.|++++++.+......
T Consensus       151 G~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        151 GRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCHHHHHHHHHhhcc
Confidence            99999999999875543

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.66  E-value=1.4e-15  Score=146.52  Aligned_cols=158  Identities=12%  Similarity=0.122  Sum_probs=101.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-----ccceeeeeEEEEE--CCeEE----------EEEEEeCCCCcCC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-----MAGLNLINKTLMV--QGARI----------AFSIWDVGGDSRS  161 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-----t~~~~~~~~~~~~--~~~~~----------~l~l~Dt~G~e~~  161 (284)
                      +...|+++|++++|||||++++.+.......+     ++|.++.......  .+..+          .+.+|||+|++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            45679999999999999999998765442222     4454433222110  11111          1679999999999


Q ss_pred             cccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-----------cch
Q 023316          162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-----------WTI  227 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-----------~~~  227 (284)
                      ..++...++.+|++++|+|+++   +.+++.+..+    ..  ...|.|+++||+|+.........           ..+
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v  158 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV  158 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence            9988888999999999999987   5666554422    22  23455899999996311110000           000


Q ss_pred             HH-------HHHHHHHHc---------------CCcEEEEcCCCCcCHHHHHHHHHH
Q 023316          228 AT-------QARAYAKAM---------------KATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       228 ~~-------~~~~~a~~~---------------~~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      .+       +...+....               .++++.+||.+|+|+++++..+..
T Consensus       159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            00       011111111               257899999999999999988764

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.65  E-value=1.8e-15  Score=130.45  Aligned_cols=180  Identities=14%  Similarity=0.216  Sum_probs=116.9

Q ss_pred             CCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--Cccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc------
Q 023316           93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------  163 (284)
Q Consensus        93 ~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~------  163 (284)
                      +...+...+.|+|||.||||||||.|.+++.+..  +... |+.-..   .-.+.....++.++||+|.-.-..      
T Consensus        65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i---lgi~ts~eTQlvf~DTPGlvs~~~~r~~~l  141 (379)
T KOG1423|consen   65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI---LGIITSGETQLVFYDTPGLVSKKMHRRHHL  141 (379)
T ss_pred             CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee---eEEEecCceEEEEecCCcccccchhhhHHH
Confidence            3455667899999999999999999999999877  2222 443222   112233345678999999654211      


Q ss_pred             ------cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC----------CCCCcccch
Q 023316          164 ------HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR----------LPPDLQWTI  227 (284)
Q Consensus       164 ------~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~----------~~~~~~~~~  227 (284)
                            -.+..+..||.+++|+|+++....-. ...+..++.+. ..|-|+|.||+|...+          +.+..   .
T Consensus       142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~---l  216 (379)
T KOG1423|consen  142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGE---L  216 (379)
T ss_pred             HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccc---c
Confidence                  12235678999999999986332211 24455565553 2334999999994211          00000   0


Q ss_pred             HHHHHHHHHHc-------------CC----cEEEEcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023316          228 ATQARAYAKAM-------------KA----TLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP  280 (284)
Q Consensus       228 ~~~~~~~a~~~-------------~~----~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  280 (284)
                      .....++.++.             |+    .+|.+||++|+||+++-++++..+...+|+......++++
T Consensus       217 ~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s  286 (379)
T KOG1423|consen  217 AKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEES  286 (379)
T ss_pred             chhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccC
Confidence            01011222211             23    2677999999999999999999999999999887776654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.64  E-value=1.7e-15  Score=140.67  Aligned_cols=160  Identities=16%  Similarity=0.203  Sum_probs=100.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC---Cc-c--cccceeeeeEEE----------------EEC--C----eEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---RS-L--QMAGLNLINKTL----------------MVQ--G----ARIA  149 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~-~--~t~~~~~~~~~~----------------~~~--~----~~~~  149 (284)
                      ...++|+++|+.++|||||+.+|.+....   .+ .  .|+...+....+                .++  +    ....
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            44699999999999999999999653111   11 1  122221111010                011  1    1257


Q ss_pred             EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh----hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc
Q 023316          150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC----TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW  225 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~----s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~  225 (284)
                      +.+|||+|+++|..........+|++++|+|+++..    +.+.+.    .+.. ....++|+|+||+|+.   +++...
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~-~~i~~iiVVlNK~Dl~---~~~~~~  158 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI-IGIKNIVIVQNKIDLV---SKERAL  158 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH-cCCCcEEEEEEeeccc---cchhHH
Confidence            889999999987654444456779999999998643    333322    2222 1222457999999972   222111


Q ss_pred             chHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          226 TIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       226 ~~~~~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      ...++...+++..   +++++++||++|.|++++|+.|...+.
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            1234455555432   578999999999999999999988764

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.61  E-value=8.1e-15  Score=126.42  Aligned_cols=112  Identities=13%  Similarity=0.156  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--------------Ccc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--------------~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~  164 (284)
                      +|+++|..|+|||||+++++...-.              +..   ...|..+......+......+.+|||+|+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4899999999999999999753110              000   11223333333333334467889999999999888


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      +..+++.+|++++|+|+++.... ....|+..+.+.  ..|.++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECcccc
Confidence            88899999999999999887553 334555555443  34558999999964

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.61  E-value=1.9e-14  Score=128.77  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=58.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEE---------------------ECC-eEEEEEEEeCCCC-
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLM---------------------VQG-ARIAFSIWDVGGD-  158 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~---------------------~~~-~~~~l~l~Dt~G~-  158 (284)
                      |.++|.+|||||||++++++.... ..+|.++.+.......                     +++ ..+.+++|||+|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999998866 5555322221111111                     233 3477999999998 


Q ss_pred             ---cCCccccccc---ccCCcEEEEEEeCC
Q 023316          159 ---SRSFDHVPIA---CKDAVAILFMFDLT  182 (284)
Q Consensus       159 ---e~~~~~~~~~---~~~ad~iilv~d~~  182 (284)
                         +++..+...|   +++||++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               5566676665   89999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.60  E-value=1.7e-14  Score=121.16  Aligned_cols=163  Identities=14%  Similarity=0.118  Sum_probs=96.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccce-eeeeEEEEEC-CeEEEEEEEeCCCCcCCccccccc-----ccC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL-NLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIA-----CKD  171 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~-~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~-----~~~  171 (284)
                      ++||+++|++|+|||||+|.+.+.... ....+++. +.......+. +....+.+|||+|..........|     +.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            479999999999999999999987654 22233331 1110101111 112357899999986543322233     678


Q ss_pred             CcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC------cccchHHHHHHH----HHHcC-
Q 023316          172 AVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD------LQWTIATQARAY----AKAMK-  239 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~------~~~~~~~~~~~~----a~~~~-  239 (284)
                      +|+++++.|    .+|.+.. .|++.+.+.  ..+.++|+||+|+...-...      .+....++.++.    ....+ 
T Consensus        81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            899888843    2233333 566666664  34558999999972110000      011112222222    22222 


Q ss_pred             --CcEEEEcCC--CCcCHHHHHHHHHHHHhCCc
Q 023316          240 --ATLFFSSAT--HNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       240 --~~~~~~Sa~--~~~~v~~lf~~l~~~i~~~~  268 (284)
                        -++|.+|+.  .+.++..+.+.+...+.+..
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence              367889998  56899999999988876543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01850 CDC_Septin CDC/Septin

Probab=99.59  E-value=1.4e-14  Score=127.65  Aligned_cols=142  Identities=12%  Similarity=0.186  Sum_probs=94.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-C----------cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------  162 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~----------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------  162 (284)
                      .++|+|+|.+|+|||||+|++++..+. .          ..+|++.+.....+..+|..+.+.+|||+|...+.      
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            689999999999999999999998865 2          12355666666677778888999999999954321      


Q ss_pred             --------------------cccccccc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCC
Q 023316          163 --------------------DHVPIACK--DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRL  219 (284)
Q Consensus       163 --------------------~~~~~~~~--~ad~iilv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~  219 (284)
                                          ..+...+.  .+|+++++.+.+... +... ...++.+.   ...+.|+|+||+|+   +
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~~v~vi~VinK~D~---l  156 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---KRVNIIPVIAKADT---L  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---ccCCEEEEEECCCc---C
Confidence                                11213444  356666666655421 2111 23334343   23455899999996   3


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          220 PPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       220 ~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      .........+...+.++.+++++|.....
T Consensus       157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         157 TPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            33222334667788888899999876653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.58  E-value=1.1e-14  Score=124.20  Aligned_cols=149  Identities=13%  Similarity=0.046  Sum_probs=90.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC---------------------------CCC-----cccccceeeeeEEEEECCeEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE---------------------------QER-----SLQMAGLNLINKTLMVQGARIA  149 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~---------------------------~~~-----~~~t~~~~~~~~~~~~~~~~~~  149 (284)
                      +|+++|..++|||||+.+|+...                           +..     ....+..+.....+..++  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            48999999999999999995321                           000     011223333334444444  56


Q ss_pred             EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC-CCC
Q 023316          150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-------TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR-LPP  221 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~-------s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~-~~~  221 (284)
                      +.+|||+|+..|.......++.+|++|+|+|+++..       ..+....| ..+. .....+.|+++||+|+... .++
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLAR-TLGVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHH-HcCCCeEEEEEEccccccccccH
Confidence            789999999887665556678899999999998842       11222222 2222 2222344689999996211 001


Q ss_pred             CcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHH
Q 023316          222 DLQWTIATQARAYAKAMK-----ATLFFSSATHNINVN  254 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~  254 (284)
                      .......+++..+.+..+     ++++.+||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            111122344444455543     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.57  E-value=3.1e-14  Score=121.75  Aligned_cols=153  Identities=11%  Similarity=0.133  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCccc------------------------ccceeeee---------------EEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ------------------------MAGLNLIN---------------KTLM  142 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~------------------------t~~~~~~~---------------~~~~  142 (284)
                      ||+++|+.++|||||+.+|..+.+.....                        ..|.+...               ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999999766541100                        01111110               1111


Q ss_pred             ECCeEEEEEEEeCCCCcCCcccccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          143 VQGARIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       143 ~~~~~~~l~l~Dt~G~e~~~~~~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      ..  ...+.+.||+|+++|.......+  ..+|++++|.|+....+-.+ ..++..+...  ..|+|+|.||+|+   .+
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~--~ip~ivvvNK~D~---~~  152 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL--NIPVFVVVTKIDL---AP  152 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEECccc---cC
Confidence            12  24577999999998865443334  36899999999876543222 2333433332  3456899999996   22


Q ss_pred             CCcccchHHHHHHHHHH--------------------------cCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316          221 PDLQWTIATQARAYAKA--------------------------MKATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~--------------------------~~~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      ........++...+.+.                          ..+++|.+||.+|+|++++...|..
T Consensus       153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            22111223333333221                          1248899999999999999887643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.57  E-value=5.1e-14  Score=133.60  Aligned_cols=156  Identities=15%  Similarity=0.106  Sum_probs=121.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc------cccccc--c
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--K  170 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~------~~~~~~--~  170 (284)
                      ..+|+++|.||||||||.|++++.... .++|.++++-....+...+..  +++.|.+|.-....      ..+.|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            457999999999999999999999888 999999988888888888876  66999999765432      344454  3


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  250 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~  250 (284)
                      +.|++|-|.|.+|.+-  ++.-.++-+   .-..|.|++.|++|.      ..++-+.-+.+++.+..|+|.+++||++|
T Consensus        81 ~~D~ivnVvDAtnLeR--nLyltlQLl---E~g~p~ilaLNm~D~------A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g  149 (653)
T COG0370          81 KPDLIVNVVDATNLER--NLYLTLQLL---ELGIPMILALNMIDE------AKKRGIRIDIEKLSKLLGVPVVPTVAKRG  149 (653)
T ss_pred             CCCEEEEEcccchHHH--HHHHHHHHH---HcCCCeEEEeccHhh------HHhcCCcccHHHHHHHhCCCEEEEEeecC
Confidence            6799999999998763  333223222   224556899999994      33444566778889999999999999999


Q ss_pred             cCHHHHHHHHHHHHhCCc
Q 023316          251 INVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~~~  268 (284)
                      .|++++.+.+......+.
T Consensus       150 ~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         150 EGLEELKRAIIELAESKT  167 (653)
T ss_pred             CCHHHHHHHHHHhccccc
Confidence            999999999887655443

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.56  E-value=7.1e-14  Score=117.05  Aligned_cols=149  Identities=11%  Similarity=0.100  Sum_probs=95.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCC-------C-----Ccc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQ-------E-----RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~-------~-----~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~  164 (284)
                      .++|+++|..++|||||+++|+....       .     ...   ..-|.........+......+.+.||+|...|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47899999999999999999975410       0     000   01233333333334334456779999999988776


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC---
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK---  239 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~---  239 (284)
                      ....+..+|++++|+|++..-.-+. ...+..+...  ..+ .|++.||+|+.   .++. .....++.+.+.+..+   
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~---~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV--GVPYIVVFLNKADMV---DDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCcEEEEEeCCCCC---CcHHHHHHHHHHHHHHHHHhcccc
Confidence            6777889999999999976433222 2233333332  234 36889999972   2221 1123455666666554   


Q ss_pred             --CcEEEEcCCCCcCHH
Q 023316          240 --ATLFFSSATHNINVN  254 (284)
Q Consensus       240 --~~~~~~Sa~~~~~v~  254 (284)
                        ++++.+||.+|.|+.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence              689999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=6.8e-15  Score=116.05  Aligned_cols=160  Identities=15%  Similarity=0.161  Sum_probs=117.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .-|++++|-.|+|||||++.+.+++.....||..+..  ..+.+.|  +++..+|.+|+..-+..|..|+..+|++++.+
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS--E~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv   95 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV   95 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccCCCcCCCh--HHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence            3589999999999999999999998877777776553  3455555  66889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc--------C---CcEEEEc
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--------K---ATLFFSS  246 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~--------~---~~~~~~S  246 (284)
                      |+.|.+-|.+.+.-++.+....  ...|+++.+||+|......++.-+. ...+..+.-..        +   +..+.||
T Consensus        96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~-~l~l~~~t~~~~~v~~~~~~~rp~evfmcs  174 (193)
T KOG0077|consen   96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRF-HLGLSNFTTGKGKVNLTDSNVRPLEVFMCS  174 (193)
T ss_pred             ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHH-HHHHHHHhcccccccccCCCCCeEEEEEEE
Confidence            9999999999887777765543  3456689999999533322211100 01111111111        1   2456799


Q ss_pred             CCCCcCHHHHHHHHHHHH
Q 023316          247 ATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i  264 (284)
                      ...+.+..+.|.|+.+.+
T Consensus       175 i~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  175 IVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEccCccceeeeehhhhc
Confidence            999999999999887654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.56  E-value=3.7e-14  Score=111.52  Aligned_cols=133  Identities=21%  Similarity=0.273  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-----CcccccccccCCcEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-----SFDHVPIACKDAVAIL  176 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-----~~~~~~~~~~~ad~ii  176 (284)
                      ||+++|..|+|||||+++|.+.+. .+..|..+.+...            +.||+|.--     |+.+. ....+||.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~~~------------~IDTPGEyiE~~~~y~aLi-~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYYDN------------TIDTPGEYIENPRFYHALI-VTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEeccc------------EEECChhheeCHHHHHHHH-HHHhhCCEEE
Confidence            799999999999999999988665 2223444433322            458887422     11222 2235999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~  255 (284)
                      ++.|.+++.+.-. ..+...     -..|+|-|.||+|+    +.  .....+.++++.+..|+ ..|++|+.+|+|+++
T Consensus        69 ll~dat~~~~~~p-P~fa~~-----f~~pvIGVITK~Dl----~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~e  136 (143)
T PF10662_consen   69 LLQDATEPRSVFP-PGFASM-----FNKPVIGVITKIDL----PS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEE  136 (143)
T ss_pred             EEecCCCCCccCC-chhhcc-----cCCCEEEEEECccC----cc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHH
Confidence            9999998754211 011111     24566899999996    21  12235678888888888 578899999999999


Q ss_pred             HHHHH
Q 023316          256 IFKFI  260 (284)
Q Consensus       256 lf~~l  260 (284)
                      +.++|
T Consensus       137 L~~~L  141 (143)
T PF10662_consen  137 LKDYL  141 (143)
T ss_pred             HHHHH
Confidence            99876

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12735 elongation factor Tu; Reviewed

Probab=99.54  E-value=1.1e-13  Score=128.09  Aligned_cols=162  Identities=11%  Similarity=0.121  Sum_probs=102.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC-------CCC-----Cc---ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN-------EQE-----RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~-------~~~-----~~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ...++|+++|..++|||||+++|++.       .+.     ..   ....|.........+......+.++||+|+++|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            34789999999999999999999862       110     00   0022333333333343344567899999998876


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--  239 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--  239 (284)
                      ......+..+|++++|+|+.+...-+. ...+..+...  ..+.| ++.||+|+.+  .++......++++.+.+.++  
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~--gi~~iivvvNK~Dl~~--~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV--GVPYIVVFLNKCDMVD--DEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEecCCcc--hHHHHHHHHHHHHHHHHHcCCC
Confidence            655566789999999999987433222 2333333321  33445 6799999731  11111222456677776654  


Q ss_pred             ---CcEEEEcCCCCc----------CHHHHHHHHHHHH
Q 023316          240 ---ATLFFSSATHNI----------NVNKIFKFIMAKL  264 (284)
Q Consensus       240 ---~~~~~~Sa~~~~----------~v~~lf~~l~~~i  264 (284)
                         ++++++||.+|.          ++.++++.+...+
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence               678999999984          5677777776654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.53  E-value=1.3e-13  Score=127.65  Aligned_cols=148  Identities=11%  Similarity=0.088  Sum_probs=94.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC-------C-----CCcc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE-------Q-----ERSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~-------~-----~~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ...++|+++|..++|||||+++|++..       +     ....   ...|.......+.++.....+.+|||+|+++|.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence            347899999999999999999997420       0     0000   012333333344454455667899999999986


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC-
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK-  239 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~-  239 (284)
                      .........+|++++|+|++.....+.. +.+..+...  ..+++ ++.||+|+.   +.+. .....++.+.+++.++ 
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~--gi~~iIvvvNK~Dl~---~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV--GVPYIVVFLNKCDMV---DDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCEEEEEEEecccC---CHHHHHHHHHHHHHHHHHhcCC
Confidence            5555556788999999999874322222 222233322  34444 689999972   2211 1122456777777765 


Q ss_pred             ----CcEEEEcCCCCc
Q 023316          240 ----ATLFFSSATHNI  251 (284)
Q Consensus       240 ----~~~~~~Sa~~~~  251 (284)
                          ++++.+||.+|.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       164 PGDDTPIIRGSALKAL  179 (394)
T ss_pred             CccCccEEECcccccc
Confidence                789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.52  E-value=1.3e-13  Score=117.52  Aligned_cols=111  Identities=19%  Similarity=0.245  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--Ccc-------------cccceeee--eEEEEEC--------CeEEEEEEEeCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSL-------------QMAGLNLI--NKTLMVQ--------GARIAFSIWDVG  156 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~-------------~t~~~~~~--~~~~~~~--------~~~~~l~l~Dt~  156 (284)
                      +|+++|..++|||||+.+|+...-.  ...             ..-|....  ...+.+.        +..+.+.+|||+
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999754211  000             01122211  1122232        447889999999


Q ss_pred             CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |+++|......+++.+|++|+|+|+++..+.+....|.. +..  ...|+|+++||+|+
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~  137 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDR  137 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCc
Confidence            999999999999999999999999998776655333332 222  23456899999996

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK12736 elongation factor Tu; Reviewed

Probab=99.52  E-value=2.2e-13  Score=126.01  Aligned_cols=162  Identities=10%  Similarity=0.088  Sum_probs=102.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC------------Cc---ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE------------RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~------------~~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ...++|+++|..++|||||+.+|++....            ..   ....|.........+......+.++||+|+++|.
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence            34789999999999999999999863110            00   0022333333334444344567799999999886


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC-
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK-  239 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~-  239 (284)
                      .........+|++++|+|++....-+. ...+..+...  ..+. |++.||+|+.   +.+. .....++...+.+..+ 
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~~---~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDLV---DDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCCc---chHHHHHHHHHHHHHHHHHhCC
Confidence            555555678999999999986432222 2222333322  3443 6889999962   1111 1112446666666655 


Q ss_pred             ----CcEEEEcCCCCc--------CHHHHHHHHHHHHh
Q 023316          240 ----ATLFFSSATHNI--------NVNKIFKFIMAKLF  265 (284)
Q Consensus       240 ----~~~~~~Sa~~~~--------~v~~lf~~l~~~i~  265 (284)
                          ++++.+||++|.        ++.++++.+...+.
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                579999999983        57788877776654

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.51  E-value=1.6e-14  Score=111.29  Aligned_cols=112  Identities=15%  Similarity=0.092  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCC-cc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      +||+++|+.|+|||+|+.++....+.. .. +|.+                           +......+++.++++++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777752 22 3333                           333345577899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      |+.+++++++.+  |...+...+...++ ++++||.|+.    ++.         .+++..+..++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~----~~~---------~~~~~~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLE----EER---------QVATEEGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhH----hhC---------cCCHHHHHHHHHHhCCCcchhh
Confidence            999999999876  88877665544455 6899999951    111         1222223356678899999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.50  E-value=3.7e-13  Score=110.63  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=99.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCC----------cCCccccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVPIA  168 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------e~~~~~~~~~  168 (284)
                      ...|+++|.+|||||||+|.+++.+-- ....|.|.+.....+.+++.   +.+.|.+|-          +.+..+...|
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y  100 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEY  100 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence            567999999999999999999997633 33334555444445556554   568899993          3455566667


Q ss_pred             cc---CCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----cC
Q 023316          169 CK---DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----MK  239 (284)
Q Consensus       169 ~~---~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~----~~  239 (284)
                      +.   +-.+++++.|+...-.-.  ++.+|+.+.     ..++++|+||+|.   ++....   .......++.    ..
T Consensus       101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DK---i~~~~~---~k~l~~v~~~l~~~~~  169 (200)
T COG0218         101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADK---LKKSER---NKQLNKVAEELKKPPP  169 (200)
T ss_pred             HhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEcccc---CChhHH---HHHHHHHHHHhcCCCC
Confidence            64   356888888987654432  334565543     4455899999995   332111   2222333332    23


Q ss_pred             Cc--EEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          240 AT--LFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       240 ~~--~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      ..  ++..|+.++.|++++...|...+.
T Consensus       170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         170 DDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             ccceEEEEecccccCHHHHHHHHHHHhh
Confidence            33  677899999999999998887664

>cd04169 RF3 RF3 subfamily

Probab=99.50  E-value=4.5e-13  Score=117.55  Aligned_cols=112  Identities=12%  Similarity=0.114  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-C----------------ccc----ccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-R----------------SLQ----MAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~----------------~~~----t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e  159 (284)
                      -+|+++|.+|+|||||+++++...-. .                ++.    ..+..+......+......+.+|||+|++
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            46999999999999999999742110 0                000    11333334444444555778899999999


Q ss_pred             CCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       160 ~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      +|......+++.+|++|+|+|.++..... ...|+..+...  +.|.++++||+|+
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~~--~~P~iivvNK~D~  135 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRLR--GIPIITFINKLDR  135 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHhc--CCCEEEEEECCcc
Confidence            98877777889999999999998764322 23444443332  3455899999995

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.49  E-value=1.5e-12  Score=113.62  Aligned_cols=150  Identities=20%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-------cccccccCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------HVPIACKDA  172 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-------~~~~~~~~a  172 (284)
                      ..++++|.|+||||||++++++.+.. ..|+-++.+.....+.++|..  +|+.|++|.-.-.+       ..-...++|
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R~A  141 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVARNA  141 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeeccC
Confidence            57999999999999999999999888 889977777778888888855  77999998654222       222356899


Q ss_pred             cEEEEEEeCCChhh-HHHHHHHHHH--------------------------------------------HHhHCC-----
Q 023316          173 VAILFMFDLTSRCT-LNSIVGWYSE--------------------------------------------ARKWNQ-----  202 (284)
Q Consensus       173 d~iilv~d~~~~~s-~~~~~~~~~~--------------------------------------------l~~~~~-----  202 (284)
                      |++++|.|+....+ .+-+.+.++.                                            ..-++.     
T Consensus       142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir  221 (365)
T COG1163         142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR  221 (365)
T ss_pred             CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence            99999999986554 3222222211                                            100000     


Q ss_pred             ----------------CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          203 ----------------TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       203 ----------------~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                                      .-.| +.|.||+|+    ..      .++...+.+..  .++.+||+.+.|++++.+.|.+.+
T Consensus       222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~----~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         222 EDVTLDDLIDALEGNRVYKPALYVVNKIDL----PG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             cCCcHHHHHHHHhhcceeeeeEEEEecccc----cC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                            0134 899999996    11      23444444443  789999999999999999999877

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.49  E-value=8.7e-13  Score=121.54  Aligned_cols=82  Identities=18%  Similarity=0.244  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEE---------------------ECC-eEEEEEEEeCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLM---------------------VQG-ARIAFSIWDVGG  157 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~---------------------~~~-~~~~l~l~Dt~G  157 (284)
                      +||.++|.||||||||+|++++..+. ..++.++.+.......                     .++ ..+.+++|||+|
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999998876 5665332222222211                     112 236789999999


Q ss_pred             C----cCCccccccc---ccCCcEEEEEEeCC
Q 023316          158 D----SRSFDHVPIA---CKDAVAILFMFDLT  182 (284)
Q Consensus       158 ~----e~~~~~~~~~---~~~ad~iilv~d~~  182 (284)
                      .    ++...+...|   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    3455666677   78999999999996

>COG2262 HflX GTPases [General function prediction only]

Probab=99.49  E-value=9.3e-13  Score=118.44  Aligned_cols=160  Identities=19%  Similarity=0.182  Sum_probs=111.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC-eEEEEEEEeCCCCcCCc--cccccc------c
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSF--DHVPIA------C  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~l~Dt~G~e~~~--~~~~~~------~  169 (284)
                      -..|.++|-.|+|||||+|++++.... .+.-..+.+...+.+.+.+ ..  +.+-||.|.-+--  .+...|      .
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~--vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRK--VLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCce--EEEecCccCcccCChHHHHHHHHHHHHh
Confidence            467999999999999999999987655 4444445556667777764 44  5588999976521  222322      3


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      ..+|.+++|.|++++.-.+.+..-.+-+.+..-..+| |+|.||+|+   +++..      .........+ ..+.+||+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~---~~~~~------~~~~~~~~~~-~~v~iSA~  339 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL---LEDEE------ILAELERGSP-NPVFISAK  339 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc---cCchh------hhhhhhhcCC-CeEEEEec
Confidence            6899999999999997766666555555555444455 899999996   32221      1112222222 58899999


Q ss_pred             CCcCHHHHHHHHHHHHhCCcccc
Q 023316          249 HNINVNKIFKFIMAKLFNLPWTV  271 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~~~~~  271 (284)
                      +|.|++.+++.|...+.......
T Consensus       340 ~~~gl~~L~~~i~~~l~~~~~~~  362 (411)
T COG2262         340 TGEGLDLLRERIIELLSGLRTEV  362 (411)
T ss_pred             cCcCHHHHHHHHHHHhhhcccce
Confidence            99999999999998887554333

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=3e-13  Score=123.51  Aligned_cols=159  Identities=17%  Similarity=0.165  Sum_probs=108.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-Cccc--------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDH--------VPIA  168 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~--------~~~~  168 (284)
                      .++|+++|.||||||||+|.|.+.+..  .+.+.++.|.....++++|.+  +.+.||||..+ ..+.        ....
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHHH
Confidence            589999999999999999999999877  778888888888888889966  45899999876 2221        1235


Q ss_pred             ccCCcEEEEEEeCC--ChhhHHHHHHHHHHHHhHC-------CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC
Q 023316          169 CKDAVAILFMFDLT--SRCTLNSIVGWYSEARKWN-------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK  239 (284)
Q Consensus       169 ~~~ad~iilv~d~~--~~~s~~~~~~~~~~l~~~~-------~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~  239 (284)
                      +..+|++++|+|+.  +-++-..+...++....-.       ...+.|++.||+|+...+++- ...    ...+....+
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~-~~~----~~~~~~~~~  420 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM-TKI----PVVYPSAEG  420 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc-cCC----ceecccccc
Confidence            67999999999993  3333333334444443211       234568999999974333221 111    111111111


Q ss_pred             ---C-cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          240 ---A-TLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       240 ---~-~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                         . ...++|+++++|++++...+...+.
T Consensus       421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  421 RSVFPIVVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             CcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence               2 3445999999999999888877654

>PRK13351 elongation factor G; Reviewed

Probab=99.47  E-value=3.6e-13  Score=132.94  Aligned_cols=112  Identities=13%  Similarity=0.165  Sum_probs=79.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCC-------------C-Cccc---ccceeee--eEEEEECCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQ-------------E-RSLQ---MAGLNLI--NKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~-------------~-~~~~---t~~~~~~--~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      ..+|+++|..++|||||+++|+...-             . +..+   ..+..+.  ...+..+  ...+.+|||+|+.+
T Consensus         8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~d   85 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGHID   85 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCcHH
Confidence            57999999999999999999975310             0 0000   1111221  2233333  46788999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      |...+..+++.+|++|+|+|.++..+.+....|. .+...  ..|.++++||+|+.
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~--~~p~iiviNK~D~~  138 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY--GIPRLIFINKMDRV  138 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc--CCCEEEEEECCCCC
Confidence            9988899999999999999999887776655553 33332  34558999999964

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.46  E-value=1.7e-12  Score=113.57  Aligned_cols=158  Identities=17%  Similarity=0.137  Sum_probs=107.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-----cccccc---ccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPI---ACK  170 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-----~~~~~~---~~~  170 (284)
                      ..-|+|.|.||||||||++++.+.+.. .+||-|+-.++...+..++  ..+|+.||+|.-+.     +.+-.+   .++
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            456999999999999999999999998 8999554445555555554  45789999996431     222221   122


Q ss_pred             -CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEc
Q 023316          171 -DAVAILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSS  246 (284)
Q Consensus       171 -~ad~iilv~d~~~~--~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~S  246 (284)
                       -.+++|+++|.+..  .+.+....++++++..-. .|.++|.||+|+    ...   ...+++......-+ .....++
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~----~~~---e~~~~~~~~~~~~~~~~~~~~~  317 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDI----ADE---EKLEEIEASVLEEGGEEPLKIS  317 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccc----cch---hHHHHHHHHHHhhcccccccee
Confidence             35788999998754  467777788999988765 566899999995    211   11233333333334 3467788


Q ss_pred             CCCCcCHHHHHHHHHHHHhCC
Q 023316          247 ATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +..+.+++.+-..+.......
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhch
Confidence            888888887776666654433

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.44  E-value=5.3e-13  Score=123.89  Aligned_cols=150  Identities=15%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-Cc------------c---------------------cccceeeeeEEEEECCe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS------------L---------------------QMAGLNLINKTLMVQGA  146 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~------------~---------------------~t~~~~~~~~~~~~~~~  146 (284)
                      ++|+++|..++|||||+.+|+...-. ..            .                     ..+..+.....+..+  
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence            58999999999999999999643211 00            0                     011123322233333  


Q ss_pred             EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  226 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~  226 (284)
                      ...+.++||+|+++|.......+..+|++|+|+|+.....-+....|. .+... ...+.|++.||+|+.+. +++....
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~~~~iivviNK~D~~~~-~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-GIRHVVLAVNKMDLVDY-DEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-CCCcEEEEEEecccccc-hHHHHHH
Confidence            346789999999998655556788999999999987653322222221 12221 22234789999996311 0110111


Q ss_pred             hHHHHHHHHHHcC---CcEEEEcCCCCcCHHH
Q 023316          227 IATQARAYAKAMK---ATLFFSSATHNINVNK  255 (284)
Q Consensus       227 ~~~~~~~~a~~~~---~~~~~~Sa~~~~~v~~  255 (284)
                      ..++...+.+..+   ++++.+||.+|+|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            2344444555554   4699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.44  E-value=5.9e-13  Score=125.66  Aligned_cols=156  Identities=12%  Similarity=0.083  Sum_probs=92.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc------------ccc-------------------cceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS------------LQM-------------------AGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~------------~~t-------------------~~~~~~~~~~~~~~  145 (284)
                      ...++|+++|..++|||||+.+++...-. ..            .-+                   -|.........+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            44699999999999999999999754311 00            000                   01112222222233


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW  225 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~  225 (284)
                      ....+.+|||+|+++|.......+..+|++|+|+|++....-.....|. .+.... ..+.|++.||+|+... +++...
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg-~~~iIvvvNKiD~~~~-~~~~~~  181 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLLG-IKHLVVAVNKMDLVDY-SEEVFE  181 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHhC-CCceEEEEEeeccccc-hhHHHH
Confidence            3456789999999988654444578999999999997643211111111 111111 2244789999996211 111011


Q ss_pred             chHHHHHHHHHHcC----CcEEEEcCCCCcCHHHH
Q 023316          226 TIATQARAYAKAMK----ATLFFSSATHNINVNKI  256 (284)
Q Consensus       226 ~~~~~~~~~a~~~~----~~~~~~Sa~~~~~v~~l  256 (284)
                      ...++...+.+..+    ++++.+||++|.|+.++
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            12334444444443    67999999999999764

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=3.5e-12  Score=117.76  Aligned_cols=163  Identities=15%  Similarity=0.199  Sum_probs=122.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCC-----------CCcc---cccceeeeeEEE--EE-CCeEEEEEEEeCCCCcCCc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQ-----------ERSL---QMAGLNLINKTL--MV-QGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~-----------~~~~---~t~~~~~~~~~~--~~-~~~~~~l~l~Dt~G~e~~~  162 (284)
                      .-++.+|-.---|||||..+++.-.=           .+..   .--|+++...+.  .+ +|+.+.+.+.||+|+.+|.
T Consensus        60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs  139 (650)
T KOG0462|consen   60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS  139 (650)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence            45789999999999999999964211           0111   112444444332  22 5788999999999999999


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  242 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~  242 (284)
                      ......+.-|+++|+|+|.+..-.-+.+..++..+..   +-.+|.|.||+|    +|..+...+..+..++....+.+.
T Consensus       140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKID----lp~adpe~V~~q~~~lF~~~~~~~  212 (650)
T KOG0462|consen  140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKID----LPSADPERVENQLFELFDIPPAEV  212 (650)
T ss_pred             ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccC----CCCCCHHHHHHHHHHHhcCCccce
Confidence            9999999999999999999877665666666555533   445689999999    455555555677777766667789


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          243 FFSSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       243 ~~~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      +.+||++|.|+.++|+.+++.+...+-
T Consensus       213 i~vSAK~G~~v~~lL~AII~rVPpP~~  239 (650)
T KOG0462|consen  213 IYVSAKTGLNVEELLEAIIRRVPPPKG  239 (650)
T ss_pred             EEEEeccCccHHHHHHHHHhhCCCCCC
Confidence            999999999999999999999866543

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.43  E-value=2e-12  Score=123.21  Aligned_cols=115  Identities=10%  Similarity=0.090  Sum_probs=78.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc--CCCC--Cc--------------c---cccceeeeeEEEEECCeEEEEEEEeCCC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE--RS--------------L---QMAGLNLINKTLMVQGARIAFSIWDVGG  157 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~--~~~~--~~--------------~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G  157 (284)
                      ...+|+++|..++|||||+++|+.  +...  ..              .   ...|..+......+....+.+.+|||+|
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            356899999999999999999963  1100  00              0   0113333333333333446788999999


Q ss_pred             CcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       158 ~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      +++|......+++.+|++|+|+|+++...- ....++......  +.|.|+++||+|+.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~~--~iPiiv~iNK~D~~  144 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRLR--DTPIFTFINKLDRD  144 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHhc--CCCEEEEEECCccc
Confidence            999988778889999999999999875432 233444444332  34558999999964

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.43  E-value=2.6e-12  Score=98.40  Aligned_cols=105  Identities=12%  Similarity=0.199  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc---------cccccc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH---------VPIACK  170 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~---------~~~~~~  170 (284)
                      ||+|+|.+|+|||||+|.+++....  ...+..+.......+.+++..+  .++||+|...-...         ....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6999999999999999999986543  4444333333335556677664  59999997653111         122347


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTK  212 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK  212 (284)
                      .+|++++|+|..++.. +....+++.++   ...+.++|.||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            9999999999877422 23334445552   34455899998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>CHL00071 tufA elongation factor Tu

Probab=99.42  E-value=3.7e-12  Score=118.46  Aligned_cols=150  Identities=9%  Similarity=0.071  Sum_probs=93.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC---------------CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ...++|+++|..++|||||+++|++..-.               .....-|.........+......+.+.||+|+.+|.
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~   89 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence            44699999999999999999999864110               000012222222223333334456799999998876


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC-
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK-  239 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~-  239 (284)
                      ......+..+|++++|+|+.....-+. ...+..+...  ..| .|++.||+|+.   +.+. .....+++..+.+..+ 
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~--g~~~iIvvvNK~D~~---~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         90 KNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV--GVPNIVVFLNKEDQV---DDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEccCCC---CHHHHHHHHHHHHHHHHHHhCC
Confidence            666666789999999999976433222 2233333322  234 35889999962   2111 1122456666666654 


Q ss_pred             ----CcEEEEcCCCCcCH
Q 023316          240 ----ATLFFSSATHNINV  253 (284)
Q Consensus       240 ----~~~~~~Sa~~~~~v  253 (284)
                          ++++.+||.+|.|+
T Consensus       164 ~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        164 PGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCcceEEEcchhhcccc
Confidence                67899999998753

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.41  E-value=3.4e-12  Score=119.33  Aligned_cols=180  Identities=21%  Similarity=0.396  Sum_probs=128.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEEC--CeEEEEEEEeCCCCcCCcccccccccCC----c
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDA----V  173 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt~G~e~~~~~~~~~~~~a----d  173 (284)
                      .-.|+|+|+.++|||||+.+|.+.+  ...++.|.+|....+.-+  +....+.+|-..|...+..+.+..+...    -
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            3579999999999999999997654  334466776654443222  2335689999998777777776655432    4


Q ss_pred             EEEEEEeCCChhhH-HHHHHHHHHHHhHC------------------------------C-----------------C--
Q 023316          174 AILFMFDLTSRCTL-NSIVGWYSEARKWN------------------------------Q-----------------T--  203 (284)
Q Consensus       174 ~iilv~d~~~~~s~-~~~~~~~~~l~~~~------------------------------~-----------------~--  203 (284)
                      .+|+|.|.+.+..+ +++..|+..++++-                              .                 .  
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            78899999999764 56677766543210                              0                 0  


Q ss_pred             -------------Cce-EEEEeCCCCCCCCCCCcc------cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          204 -------------AIP-ILIGTKFDDFVRLPPDLQ------WTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       204 -------------~~~-Ilv~nK~Dl~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                                   ++| +||++|+|.+..+..+..      ..+.+-++.+|-.+|+.++.||++...|++-++..|.+.
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~  262 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR  262 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence                         245 699999996544433221      123566788999999999999999999999999999999


Q ss_pred             HhCCccccccccCCCCCC
Q 023316          264 LFNLPWTVKRNLTIGEPI  281 (284)
Q Consensus       264 i~~~~~~~~~~~~~~~~~  281 (284)
                      ++..+.+...+....+.+
T Consensus       263 l~~~~f~~~~~vv~~d~i  280 (472)
T PF05783_consen  263 LYGFPFKTPAQVVERDAI  280 (472)
T ss_pred             hccCCCCCCceeeccccc
Confidence            999998866666555444

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.41  E-value=4e-12  Score=110.71  Aligned_cols=175  Identities=22%  Similarity=0.367  Sum_probs=124.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEE--EECCeEEEEEEEeCCCCcCCcccccccccCC----c
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTL--MVQGARIAFSIWDVGGDSRSFDHVPIACKDA----V  173 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~a----d  173 (284)
                      .-.|+|+|+.++|||||+.++.+.+-.  .+..|..|..-.+  ...+....+.+|-..|.--...+....+...    -
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e~~--KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSETV--KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccccc--CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            347999999999999999999887632  2344554433222  1233446678898888876666666555432    3


Q ss_pred             EEEEEEeCCChhh-HHHHHHHHHHHHhHCC--------------------------------------------------
Q 023316          174 AILFMFDLTSRCT-LNSIVGWYSEARKWNQ--------------------------------------------------  202 (284)
Q Consensus       174 ~iilv~d~~~~~s-~~~~~~~~~~l~~~~~--------------------------------------------------  202 (284)
                      .+|++.|++++.+ ++.+++|..-++++..                                                  
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            6788999999966 5778888876654210                                                  


Q ss_pred             -----------CCce-EEEEeCCCCCCCCCCCcc------cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          203 -----------TAIP-ILIGTKFDDFVRLPPDLQ------WTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       203 -----------~~~~-Ilv~nK~Dl~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                                 -+++ +||.+|||.+..+..+..      .-+...++.||-.+|+..+.+|++...|++-+++.|++.+
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                       0245 699999996433222211      1235667899999999999999999999999999999999


Q ss_pred             hCCccccccccC
Q 023316          265 FNLPWTVKRNLT  276 (284)
Q Consensus       265 ~~~~~~~~~~~~  276 (284)
                      +..+.+......
T Consensus       290 yG~~fttpAlVV  301 (473)
T KOG3905|consen  290 YGFPFTTPALVV  301 (473)
T ss_pred             cCcccCCcceEe
Confidence            998877655443

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.40  E-value=2.7e-12  Score=112.82  Aligned_cols=146  Identities=16%  Similarity=0.134  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-C---cc-c--------------ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-R---SL-Q--------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~---~~-~--------------t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      +|+++|.+|+|||||+++++...-. .   .. .              ..........+..++  ..+.+|||+|...|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            4899999999999999999753211 0   00 0              111112222333444  567899999999887


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  242 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~  242 (284)
                      .....+++.+|++++|+|.++.........|. .+...  ..|.++++||+|+.    ..   ...+...++...++.+.
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~--~~p~iivvNK~D~~----~~---~~~~~~~~l~~~~~~~~  148 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA--GIPRIIFINKMDRE----RA---DFDKTLAALQEAFGRPV  148 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCccC----CC---CHHHHHHHHHHHhCCCe
Confidence            77888899999999999999876655444443 33322  34558999999952    21   11233344444556554


Q ss_pred             EE--EcCCCCcCHHHHHHH
Q 023316          243 FF--SSATHNINVNKIFKF  259 (284)
Q Consensus       243 ~~--~Sa~~~~~v~~lf~~  259 (284)
                      +.  +...++.++..+.+.
T Consensus       149 ~~~~ip~~~~~~~~~~vd~  167 (268)
T cd04170         149 VPLQLPIGEGDDFKGVVDL  167 (268)
T ss_pred             EEEEecccCCCceeEEEEc
Confidence            43  445666555444333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00503 prfC peptide chain release factor 3

Probab=99.40  E-value=4e-12  Score=121.18  Aligned_cols=115  Identities=10%  Similarity=0.096  Sum_probs=79.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc--CCCC--Cc--------------c---cccceeeeeEEEEECCeEEEEEEEeCCC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE--RS--------------L---QMAGLNLINKTLMVQGARIAFSIWDVGG  157 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~--~~~~--~~--------------~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G  157 (284)
                      ...+|+++|.+++|||||+++++.  +...  ..              .   ...|..+......++...+.+.+|||+|
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            357999999999999999999853  1110  00              0   0224444444444554557788999999


Q ss_pred             CcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       158 ~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      +..|......+++.+|++|+|+|.++... .....+++.++.  ...|.|+++||+|+.
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~  145 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRD  145 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECcccc
Confidence            99988877778999999999999987422 223345544433  234558999999963

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.40  E-value=2.2e-12  Score=121.53  Aligned_cols=150  Identities=10%  Similarity=0.087  Sum_probs=95.1

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCC------CCC---------cccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNE------QER---------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~------~~~---------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      ....++|+++|..++|||||+++|++..      ...         .....|.........+......+.++||+|+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            3457899999999999999999998521      100         0112233322222223223346779999999998


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHc-
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAM-  238 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~-  238 (284)
                      .......+..+|++++|+|+++...-+. .+++..+...  ..+ .|++.||+|+.   +.+. .....++...+.+.. 
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--gi~~iIvvvNK~Dl~---~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQV---DDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeccccc---CHHHHHHHHHHHHHHHHHhcC
Confidence            7666666789999999999886543332 3333334332  334 36899999973   2111 122344666666664 


Q ss_pred             ----CCcEEEEcCCCCcC
Q 023316          239 ----KATLFFSSATHNIN  252 (284)
Q Consensus       239 ----~~~~~~~Sa~~~~~  252 (284)
                          .++++.+||.++.|
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                46789999998854

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.40  E-value=2.3e-12  Score=120.74  Aligned_cols=155  Identities=14%  Similarity=0.104  Sum_probs=99.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCC---------------------------CCccc---ccceeeeeEEEEECCeE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ---------------------------ERSLQ---MAGLNLINKTLMVQGAR  147 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~---------------------------~~~~~---t~~~~~~~~~~~~~~~~  147 (284)
                      ...++|+++|..++|||||+-+|+...-                           .+..+   ..|..+......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            3468999999999999999998863210                           00000   11222222233334445


Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhHCCCCce-EEEEeCCCCCC-C
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN-------SIVGWYSEARKWNQTAIP-ILIGTKFDDFV-R  218 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~-------~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~-~  218 (284)
                      ..+.+.||+|+++|.......+..+|++|+|+|+++ ..|+       ...+.+..+.  ....++ |++.||+|+.. .
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~--~~gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAF--TLGVKQMICCCNKMDATTPK  161 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHH--HcCCCcEEEEEEcccCCchh
Confidence            678899999999998888888999999999999986 2232       2222222221  123344 67899999620 0


Q ss_pred             CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023316          219 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK  255 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~  255 (284)
                      ...++-..+.++++.++++.|     ++|+++||.+|+|+.+
T Consensus       162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            001112223667788888776     6799999999999854

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.39  E-value=2.5e-12  Score=125.85  Aligned_cols=152  Identities=14%  Similarity=0.082  Sum_probs=91.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-C-c----------cc----------------------ccceeeeeEEEEEC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R-S----------LQ----------------------MAGLNLINKTLMVQ  144 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~-~----------~~----------------------t~~~~~~~~~~~~~  144 (284)
                      ..++|+++|.+++|||||+++++...-. . .          ..                      .++.+.....+..+
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~  102 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP  102 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence            3589999999999999999999864321 1 0          00                      11122222222333


Q ss_pred             CeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316          145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ  224 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~  224 (284)
                      +  ..+.++||+|+++|.......+..+|++|+|+|++....-+.... +..+... ...+.||+.||+|+.+. +++..
T Consensus       103 ~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~-~~~~iivvvNK~D~~~~-~~~~~  177 (632)
T PRK05506        103 K--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL-GIRHVVLAVNKMDLVDY-DQEVF  177 (632)
T ss_pred             C--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh-CCCeEEEEEEecccccc-hhHHH
Confidence            3  456799999999876544456789999999999976532221111 1122222 12334789999996210 01111


Q ss_pred             cchHHHHHHHHHHcC---CcEEEEcCCCCcCHHH
Q 023316          225 WTIATQARAYAKAMK---ATLFFSSATHNINVNK  255 (284)
Q Consensus       225 ~~~~~~~~~~a~~~~---~~~~~~Sa~~~~~v~~  255 (284)
                      ....++...+.+.++   ++++.+||++|.|+.+
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            112344555555655   4589999999999874

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.38  E-value=1.9e-11  Score=102.39  Aligned_cols=159  Identities=13%  Similarity=0.095  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-Ccc--cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------c---cc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------H---VP  166 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~---~~  166 (284)
                      ++|+++|.+|+|||||+|.+++.+.. ...  +..+.+.......+++.  .+.++||+|......        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999998754 221  22333333334445665  467999999765421        1   11


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccc----hHHHHHHHHHHcC
Q 023316          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWT----IATQARAYAKAMK  239 (284)
Q Consensus       167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~----~~~~~~~~a~~~~  239 (284)
                      ....+.|++|+|.|+.+ .+-++ ...++.+.+...   -.+.|+|.|++|.   +.+.....    .....+.+.+..+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~---l~~~~~~~~~~~~~~~l~~l~~~c~  153 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD---LEGGTLEDYLENSCEALKRLLEKCG  153 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccc---cCCCcHHHHHHhccHHHHHHHHHhC
Confidence            23468899999999876 33222 233444443322   2355799999995   22221110    1244566666666


Q ss_pred             CcEEEEc-----CCCCcCHHHHHHHHHHHHhC
Q 023316          240 ATLFFSS-----ATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       240 ~~~~~~S-----a~~~~~v~~lf~~l~~~i~~  266 (284)
                      -.++..+     +..+.++.++++.+-..+..
T Consensus       154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            6665544     45678899999999888865

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.38  E-value=9.8e-12  Score=115.10  Aligned_cols=161  Identities=9%  Similarity=0.101  Sum_probs=99.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC------------Ccc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~------------~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ...++|+++|..++|||||+++|++....            ...   ..-|.........+......+.+.||+|+++|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            44789999999999999999999863110            000   012333333333343334557799999998876


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEeCCCCCCCCCCCc-ccchHHHHHHHHHHc--
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAM--  238 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~--  238 (284)
                      ......+..+|++++|+|+.....-+. ..++..+...  ..|.+ ++.||+|+.   +.+. .....++...+....  
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~--g~p~iiVvvNK~D~~---~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV--GVPYIVVFLNKCDMV---DDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc--CCCEEEEEEeecCCc---chHHHHHHHHHHHHHHHHhcCC
Confidence            655666789999999999976533222 2333333332  23444 689999962   2111 111234555555554  


Q ss_pred             ---CCcEEEEcCCCCc----------CHHHHHHHHHHHH
Q 023316          239 ---KATLFFSSATHNI----------NVNKIFKFIMAKL  264 (284)
Q Consensus       239 ---~~~~~~~Sa~~~~----------~v~~lf~~l~~~i  264 (284)
                         +++++.+||.++.          ++.++++.|...+
T Consensus       164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence               3688999999875          3556666665543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.36  E-value=6.3e-13  Score=109.00  Aligned_cols=116  Identities=18%  Similarity=0.263  Sum_probs=69.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccc---cccCCcEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPI---ACKDAVAILF  177 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~---~~~~ad~iil  177 (284)
                      -|+++|++|+|||+|..+|..+...........+.   .+.+ +.....+.+.|++|+++.+.....   +...+.++|+
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf   81 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF   81 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence            58999999999999999999986654444332221   1112 223335779999999998763333   4789999999


Q ss_pred             EEeCCC-hhhHHHHHHHHHHHHhH---CCCCce-EEEEeCCCCCCCCC
Q 023316          178 MFDLTS-RCTLNSIVGWYSEARKW---NQTAIP-ILIGTKFDDFVRLP  220 (284)
Q Consensus       178 v~d~~~-~~s~~~~~~~~~~l~~~---~~~~~~-Ilv~nK~Dl~~~~~  220 (284)
                      |.|.+. ...+.++.+.+-.+...   ....+| +|++||.|++...+
T Consensus        82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~  129 (181)
T PF09439_consen   82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP  129 (181)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred             EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence            999874 44455555444444322   235666 48999999865444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.36  E-value=6e-12  Score=109.10  Aligned_cols=96  Identities=15%  Similarity=0.165  Sum_probs=76.6

Q ss_pred             cCCcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH
Q 023316          159 SRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA  237 (284)
Q Consensus       159 e~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~  237 (284)
                      ++|..+.+.+++++|++++|||++++. +|+.+.+|+..+..  ...++++|+||+||.    ++ .....+.+..+. .
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~----~~-~~~~~~~~~~~~-~   95 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLL----DD-EDMEKEQLDIYR-N   95 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccC----CC-HHHHHHHHHHHH-H
Confidence            778899999999999999999999887 89999999987754  355668999999972    11 112234444444 5


Q ss_pred             cCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316          238 MKATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       238 ~~~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      .+.+++++||++|.|++++|+.+..
T Consensus        96 ~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        96 IGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CCCeEEEEecCCchhHHHHHhhhcC
Confidence            7899999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=2.5e-11  Score=112.54  Aligned_cols=154  Identities=10%  Similarity=0.059  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .=|+++|.--.|||||+-.+-+.......+ .++-.+....+.++ +....+.+.||+|++.|..|+..-..-+|.++||
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            458899999999999999997776652222 33333334444443 1223466999999999999999989999999999


Q ss_pred             EeCCCh---hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCC
Q 023316          179 FDLTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHN  250 (284)
Q Consensus       179 ~d~~~~---~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~a~~~~--~~~~~~Sa~~~  250 (284)
                      .|+++.   ++.+++.    .++  ....|.|++.||+|..    +.....+..+..+   .++.++  ..++.+||++|
T Consensus        86 Va~dDGv~pQTiEAI~----hak--~a~vP~iVAiNKiDk~----~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg  155 (509)
T COG0532          86 VAADDGVMPQTIEAIN----HAK--AAGVPIVVAINKIDKP----EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG  155 (509)
T ss_pred             EEccCCcchhHHHHHH----HHH--HCCCCEEEEEecccCC----CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence            999874   4444322    121  2244558999999964    2222112222222   133333  56889999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      +|+++++..+.-..
T Consensus       156 ~Gi~eLL~~ill~a  169 (509)
T COG0532         156 EGIDELLELILLLA  169 (509)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999887544

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.33  E-value=1.2e-11  Score=108.56  Aligned_cols=109  Identities=14%  Similarity=0.116  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCC--C--C---------------cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQ--E--R---------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~--~--~---------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      +|+++|.+++|||||+++++...-  .  .               ....+..+.....+..++  ..+.+|||+|..+|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            489999999999999999964210  0  0               001222222223344444  567799999999988


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      ..+..+++.+|++|+|.|..+...-.. ..++..+.+.  ..|.|++.||+|+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~  128 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDR  128 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCC
Confidence            888889999999999999987543222 2333334332  3455899999996

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.32  E-value=2.9e-12  Score=106.67  Aligned_cols=170  Identities=17%  Similarity=0.224  Sum_probs=116.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCc--ccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-----cccccccccCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACKDA  172 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-----~~~~~~~~~~a  172 (284)
                      .-||+++|..|+||||+-..+..+....+  .++-++|+....+.+-| ++.+.+||++||+.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            35899999999999999777665543321  22333444444444433 356889999999963     33556678999


Q ss_pred             cEEEEEEeCCChhhHHHH---HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch----HHHHHHHHHHcCCcEEEE
Q 023316          173 VAILFMFDLTSRCTLNSI---VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKAMKATLFFS  245 (284)
Q Consensus       173 d~iilv~d~~~~~s~~~~---~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~  245 (284)
                      +++++|||+...+-..++   ++-++.+.++.+.+.+....+|.||   ++.+.+..+    .+..+.+.+..++.++.+
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDL---v~~d~r~~if~~r~~~l~~~s~~~~~~~f~T  159 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDL---VQEDARELIFQRRKEDLRRLSRPLECKCFPT  159 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechh---cccchHHHHHHHHHHHHHHhccccccccccc
Confidence            999999999887654444   4566777788888887889999998   444433333    334455555667788888


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCCccccccc
Q 023316          246 SATHNINVNKIFKFIMAKLFNLPWTVKRN  274 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~  274 (284)
                      |.. .+++-+++..+...+...+...+.+
T Consensus       160 siw-Detl~KAWS~iv~~lipn~~~~e~~  187 (295)
T KOG3886|consen  160 SIW-DETLYKAWSSIVYNLIPNVSALESK  187 (295)
T ss_pred             chh-hHHHHHHHHHHHHhhCCChHHHHHH
Confidence            875 5566677777777777666554443

>PLN03127 Elongation factor Tu; Provisional

Probab=99.31  E-value=5.8e-11  Score=111.29  Aligned_cols=161  Identities=10%  Similarity=0.074  Sum_probs=96.4

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcC------CCC-----------CcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGN------EQE-----------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~------~~~-----------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e  159 (284)
                      ....++|+++|..++|||||+++|.+.      ...           +....++.+.  ....+......+.+.||+|++
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence            345789999999999999999999632      110           0112233333  333344444567799999999


Q ss_pred             CCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCc-ccchHHHHHHHHHH
Q 023316          160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKA  237 (284)
Q Consensus       160 ~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~  237 (284)
                      +|..........+|++++|.|.++...-+. .+.+..+...  ..+. |++.||+|+.   +.+. .....++..++...
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDlv---~~~~~~~~i~~~i~~~l~~  209 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDVV---DDEELLELVEMELRELLSF  209 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeeccC---CHHHHHHHHHHHHHHHHHH
Confidence            876544445668999999999876533222 2222223222  3343 5789999972   2111 11123344454443


Q ss_pred             c-----CCcEEEEcCC---CCcC-------HHHHHHHHHHHHh
Q 023316          238 M-----KATLFFSSAT---HNIN-------VNKIFKFIMAKLF  265 (284)
Q Consensus       238 ~-----~~~~~~~Sa~---~~~~-------v~~lf~~l~~~i~  265 (284)
                      .     .++++.+||.   ++.|       +.++++.+...+.
T Consensus       210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            3     3578888775   4555       6777777766543

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.30  E-value=2.9e-11  Score=113.42  Aligned_cols=155  Identities=14%  Similarity=0.119  Sum_probs=95.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC--CC-------------------------Ccc---cccceeeeeEEEEECCeE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE-------------------------RSL---QMAGLNLINKTLMVQGAR  147 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~--~~-------------------------~~~---~t~~~~~~~~~~~~~~~~  147 (284)
                      ...++|+++|..++|||||+.+++..-  ..                         +..   ...|.........+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            346899999999999999999997521  00                         000   011222222222333344


Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhh---H----HHHHHHHHHHHhHCCCCce-EEEEeCCCCCC-C
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT---L----NSIVGWYSEARKWNQTAIP-ILIGTKFDDFV-R  218 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s---~----~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~-~  218 (284)
                      ..+.|.||+|+++|.......+..+|++|+|+|.+...-   |    +..+.|. .+..  ...+. |++.||+|+.. .
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~--~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT--LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH--cCCCeEEEEEEccccccch
Confidence            567899999999987766667889999999999986420   1    1112222 2222  13343 68999999411 0


Q ss_pred             CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023316          219 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK  255 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~  255 (284)
                      .+++.-..+.++...+....+     ++++.+||.+|+|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            111222233555666555544     5789999999999864

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.30  E-value=4.7e-11  Score=108.80  Aligned_cols=159  Identities=14%  Similarity=0.171  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-----------Ccc---cccceeeeeE--EEEE---CCeEEEEEEEeCCCCcCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-----------RSL---QMAGLNLINK--TLMV---QGARIAFSIWDVGGDSRS  161 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-----------~~~---~t~~~~~~~~--~~~~---~~~~~~l~l~Dt~G~e~~  161 (284)
                      -+..++-.-.-|||||..|++...-.           +..   .--|+++...  .+.+   +|..+.+++.||+|+.+|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            45778888899999999999643211           000   0113333322  3333   568899999999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-  240 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-  240 (284)
                      .-.....+..|.+.|+|+|.+..-.-+.+...|..+..   +--+|-|.||+||    |......+.+   +.-.-.|+ 
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDL----P~Adpervk~---eIe~~iGid  159 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDL----PAADPERVKQ---EIEDIIGID  159 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccC----CCCCHHHHHH---HHHHHhCCC
Confidence            88888889999999999999987666666666666643   3344789999996    4333222233   33344565 


Q ss_pred             --cEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          241 --TLFFSSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       241 --~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                        ..+.+|||+|.||+++++.++..+....-
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence              46789999999999999999999866553

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.28  E-value=3.4e-11  Score=112.81  Aligned_cols=163  Identities=15%  Similarity=0.167  Sum_probs=101.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCC---CCccc---c--cceeeeeE--------EE---EEC-C-----------e
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ---ERSLQ---M--AGLNLINK--------TL---MVQ-G-----------A  146 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~---~~~~~---t--~~~~~~~~--------~~---~~~-~-----------~  146 (284)
                      ...+.|.++|.-..|||||+..|.+-..   ..+..   |  .|......        ..   ..+ +           .
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4478999999999999999999986432   21111   2  12221100        00   000 0           0


Q ss_pred             ----EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          147 ----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       147 ----~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                          ...+.+.|++|+++|..........+|++++|.|++... .-+.. +.+..+.. ..-.+.|+|.||+|+.   +.
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~i~~~-lgi~~iIVvlNKiDlv---~~  186 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLAAVEI-MKLKHIIILQNKIDLV---KE  186 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHHHHHH-cCCCcEEEEEeccccc---CH
Confidence                135789999999988666556678999999999998642 22221 22222221 1222347899999962   22


Q ss_pred             CcccchHHHHHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          222 DLQWTIATQARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~---~~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +......++.+++.+.   .+++++.+||++|+|++++++.|...+.
T Consensus       187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            2111223444444433   3578999999999999999999887554

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.25  E-value=5.2e-11  Score=117.63  Aligned_cols=111  Identities=15%  Similarity=0.126  Sum_probs=78.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC----C-c--------------ccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE----R-S--------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~----~-~--------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      -.+|+++|..++|||||+++|+...-.    . .              ...++.+.....+..++  ..+.+|||+|+.+
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~   87 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD   87 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence            458999999999999999999642110    0 0              11223333444455554  5678999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |......+++.+|++|+|+|+++....+...-| ..+.+.  ..|.|+++||+|+
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~  139 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY--EVPRIAFVNKMDK  139 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCCEEEEEECCCC
Confidence            888888899999999999999886655544333 333332  3455899999996

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK13768 GTPase; Provisional

Probab=99.23  E-value=6.1e-11  Score=103.32  Aligned_cols=114  Identities=11%  Similarity=0.043  Sum_probs=71.2

Q ss_pred             EEEEEeCCCCcCC---cccccccccC-----CcEEEEEEeCCChhhHHHHH--HHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          149 AFSIWDVGGDSRS---FDHVPIACKD-----AVAILFMFDLTSRCTLNSIV--GWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       149 ~l~l~Dt~G~e~~---~~~~~~~~~~-----ad~iilv~d~~~~~s~~~~~--~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      .+.+||++|+.+.   +..++.+++.     ++++++++|.....+..+..  .|+........+.++|+|.||+|+.  
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~--  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL--  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc--
Confidence            5789999998773   3444333332     89999999997654433332  3444333223456778999999962  


Q ss_pred             CCCCcccchHHHHH------------------------HHHHHcC--CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          219 LPPDLQWTIATQAR------------------------AYAKAMK--ATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       219 ~~~~~~~~~~~~~~------------------------~~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                       +............                        +..+..+  .+++++||+++.|++++++++...+.
T Consensus       176 -~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        176 -SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             -CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence             2211111111111                        1122334  57899999999999999999987763

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.23  E-value=1.3e-10  Score=117.45  Aligned_cols=146  Identities=10%  Similarity=0.059  Sum_probs=89.8

Q ss_pred             CChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECC-e----------E-----EEEEEEeCCCCcCCcccccccccCCc
Q 023316          111 IGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQG-A----------R-----IAFSIWDVGGDSRSFDHVPIACKDAV  173 (284)
Q Consensus       111 vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~-~----------~-----~~l~l~Dt~G~e~~~~~~~~~~~~ad  173 (284)
                      ++||||+.++.+........ .++-.+....+.++. .          .     -.+.+|||+|++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            34999999998876652222 222222222222221 0          0     12789999999999888888889999


Q ss_pred             EEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC-C-----------cccchHHHH----H--
Q 023316          174 AILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP-D-----------LQWTIATQA----R--  232 (284)
Q Consensus       174 ~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-~-----------~~~~~~~~~----~--  232 (284)
                      ++++|+|+++   +.+++.+.    .+...  ..|.|+|+||+|+...... .           .++. .++.    .  
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~-~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHA-LTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHH-HHHHHHHHHHH
Confidence            9999999987   45555443    22222  3455899999997422110 0           0110 1111    0  


Q ss_pred             --HHHH------------Hc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          233 --AYAK------------AM--KATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       233 --~~a~------------~~--~~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                        ++++            .+  .++++.+||++|+|+++++.++...
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence              1111            11  3578999999999999999877643

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=5.5e-11  Score=98.04  Aligned_cols=157  Identities=18%  Similarity=0.207  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccccccc---CCcEEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK---DAVAILFM  178 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~---~ad~iilv  178 (284)
                      .|+++|..++|||+|..++..+.+...+.++..+-  .++.++...  +.+.|.+|+++.+.-...+++   .+-+++||
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~--a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNE--ATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeeeccce--eeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            48999999999999999999886655444444432  233444444  669999999997765555665   78999999


Q ss_pred             EeCCC-hhhHHHHHHH-HHHHHhH--CCCCceE-EEEeCCCCCCCCCCCcccch-HHHHHHHH-----------------
Q 023316          179 FDLTS-RCTLNSIVGW-YSEARKW--NQTAIPI-LIGTKFDDFVRLPPDLQWTI-ATQARAYA-----------------  235 (284)
Q Consensus       179 ~d~~~-~~s~~~~~~~-~~~l~~~--~~~~~~I-lv~nK~Dl~~~~~~~~~~~~-~~~~~~~a-----------------  235 (284)
                      .|..- ..-..++.++ |+-+...  ..+.||| +++||.|+.-..+.+.-+.. +.|+..+-                 
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~  195 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD  195 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence            99743 2334444444 4434333  2466665 88999998655443321111 22211110                 


Q ss_pred             ---------------HHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          236 ---------------KAMKATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       236 ---------------~~~~~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                                     +...+.|.++|++++ +++++-+|+...
T Consensus       196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                           012356788999988 899998888654

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.21  E-value=9.6e-11  Score=100.47  Aligned_cols=168  Identities=14%  Similarity=0.169  Sum_probs=106.2

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeE-EEEECCeEEEEEEEeCCCCcC-------Ccccccc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINK-TLMVQGARIAFSIWDVGGDSR-------SFDHVPI  167 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~-~~~~~~~~~~l~l~Dt~G~e~-------~~~~~~~  167 (284)
                      ....++|+++|..|+|||||+|++...+.. -..-..+.+.... ...+++..  +.+||++|-++       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHH
Confidence            334789999999999999999999965544 1111222222222 12345544  66999999876       5566677


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC---------CCCCcccc-hHHHHHHHHHH
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR---------LPPDLQWT-IATQARAYAKA  237 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~---------~~~~~~~~-~~~~~~~~a~~  237 (284)
                      ++...|.++++.+..|+.---+. +++..+....-+.+.|++.|.+|...-         .+...+++ +.+++....+.
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            88999999999999887532222 334444444445666899999995211         11111111 12223332222


Q ss_pred             cC--CcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          238 MK--ATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       238 ~~--~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ..  .|++..|...+-|++++...++..+-..
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            21  3777888899999999999999887643

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.21  E-value=6.8e-11  Score=117.19  Aligned_cols=113  Identities=13%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC---------------CCCC-c---ccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN---------------EQER-S---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~---------------~~~~-~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      ..+|+++|+.++|||||+.+|+..               .+.. +   ..|+........+..++..+.+.+|||+|+.+
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~   98 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD   98 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence            579999999999999999999742               1111 0   11333333333444567778899999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |......+++.+|++|+|+|+.+....+...-|.. +.+  ...|+|+++||+|.
T Consensus        99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~  150 (720)
T TIGR00490        99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDR  150 (720)
T ss_pred             cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhc
Confidence            98888889999999999999987543333333322 221  23456899999996

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.21  E-value=4.5e-10  Score=104.72  Aligned_cols=163  Identities=11%  Similarity=0.115  Sum_probs=121.0

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      +...+++.++|..++|||.|++.|++..+. ++..++...+....+.+.|+...+.+-|.+-. ...-+...- ..||++
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            344688999999999999999999999888 44457777777777777788888888887755 333232222 789999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINVN  254 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~~~~v~  254 (284)
                      .++||.+++.+|+-+...++..... ...|.++|++|+||    ++..|+...+. .+++++++++ .+.+|.++... .
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dl----De~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~  572 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADL----DEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-N  572 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeecccc----chhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-c
Confidence            9999999999999888766654443 34444799999995    55444443344 8899999984 44567664333 8


Q ss_pred             HHHHHHHHHHhCCc
Q 023316          255 KIFKFIMAKLFNLP  268 (284)
Q Consensus       255 ~lf~~l~~~i~~~~  268 (284)
                      ++|..|+.++....
T Consensus       573 ~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  573 ELFIKLATMAQYPH  586 (625)
T ss_pred             hHHHHHHHhhhCCC
Confidence            99999998876554

>PRK12740 elongation factor G; Reviewed

Probab=99.20  E-value=8.6e-11  Score=115.91  Aligned_cols=106  Identities=15%  Similarity=0.094  Sum_probs=73.0

Q ss_pred             EcCCCCChHHHHHHHhcCCCC----C----------c-----ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc
Q 023316          106 LGDCQIGKTSFVVKYVGNEQE----R----------S-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP  166 (284)
Q Consensus       106 lG~~~vGKSsLl~~l~~~~~~----~----------~-----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~  166 (284)
                      +|..++|||||+++|+...-.    .          .     ...+..+.....+..++  +.+.+|||+|+..|...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999543210    0          0     01222223333444444  6688999999998877788


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      .+++.+|++|+|+|.+...+......|. .+..  ...|.|+|+||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCC
Confidence            8899999999999999877766554443 3332  234558999999964

>PRK12739 elongation factor G; Reviewed

Probab=99.19  E-value=2.3e-10  Score=113.11  Aligned_cols=112  Identities=17%  Similarity=0.142  Sum_probs=78.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC-----CC--C------------cccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE-----QE--R------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~-----~~--~------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      ..+|+++|..++|||||+++|+...     ..  .            ....+..+.....+..++  ..+.++||+|+.+
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~   85 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVD   85 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHH
Confidence            5789999999999999999997421     00  0            112334444444555555  4577999999998


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      |...+...++.+|++|+|+|.++...-++..- +..+...  ..|.|++.||+|+.
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i-~~~~~~~--~~p~iv~iNK~D~~  138 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETV-WRQADKY--GVPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHH-HHHHHHc--CCCEEEEEECCCCC
Confidence            87778888999999999999987654443332 3333332  34558999999974

>PRK09866 hypothetical protein; Provisional

Probab=99.17  E-value=9.9e-10  Score=104.63  Aligned_cols=108  Identities=17%  Similarity=0.115  Sum_probs=69.7

Q ss_pred             EEEEEeCCCCcCC-cc----cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316          149 AFSIWDVGGDSRS-FD----HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  223 (284)
Q Consensus       149 ~l~l~Dt~G~e~~-~~----~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~  223 (284)
                      .+.+.||+|...- ..    .....+.++|++++|.|.+..-+..+ ....+.+.+.....|.|+|.||+|+.   ... 
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~---dre-  305 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQ---DRN-  305 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCC---Ccc-
Confidence            4678899998752 12    23346899999999999987544433 23444454433224668999999962   111 


Q ss_pred             ccchHHHHHHHHH----HcC---CcEEEEcCCCCcCHHHHHHHHHH
Q 023316          224 QWTIATQARAYAK----AMK---ATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       224 ~~~~~~~~~~~a~----~~~---~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      . ...+....+.+    ..+   ..+|.+||+.|.|++++++.+..
T Consensus       306 e-ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 S-DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             c-chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            1 11233333322    112   36889999999999999998876

>TIGR00101 ureG urease accessory protein UreG

Probab=99.16  E-value=5.7e-10  Score=93.73  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=61.8

Q ss_pred             EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  228 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~  228 (284)
                      ...+.++.|..-.....+   .-++.+|.|+|+++.++...  .+...+     ..--++++||+|+....+ .......
T Consensus        93 D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-----~~ad~~~~~k~d~~~~~~-~~~~~~~  161 (199)
T TIGR00101        93 EMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-----TRSDLLVINKIDLAPMVG-ADLGVME  161 (199)
T ss_pred             CEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-----hhccEEEEEhhhcccccc-ccHHHHH
Confidence            445667777422222211   12688999999987665321  111222     111289999999732111 1111113


Q ss_pred             HHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          229 TQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       229 ~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +.++.+  ..+++++++||++|+|++++|+++.+...
T Consensus       162 ~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       162 RDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            333333  34689999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.16  E-value=7.6e-10  Score=101.30  Aligned_cols=84  Identities=13%  Similarity=0.161  Sum_probs=61.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCCc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF  162 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~~  162 (284)
                      ..+||.++|.||||||||+|++.+.... .++|.++.+.....+.+.+..               .++++.||+|...-.
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            3579999999999999999999888766 677755555555555554332               348899999976422


Q ss_pred             ----cccccc---ccCCcEEEEEEeCC
Q 023316          163 ----DHVPIA---CKDAVAILFMFDLT  182 (284)
Q Consensus       163 ----~~~~~~---~~~ad~iilv~d~~  182 (284)
                          .+...|   ++.+|++++|.|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                233333   57899999999973

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=2.6e-10  Score=102.82  Aligned_cols=158  Identities=13%  Similarity=0.092  Sum_probs=98.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-C--------------------------ccc---ccceeeeeEEEEECCeE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-R--------------------------SLQ---MAGLNLINKTLMVQGAR  147 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~--------------------------~~~---t~~~~~~~~~~~~~~~~  147 (284)
                      ...++++++|+..+|||||+-+|+.+-=. +                          ...   --|.++......+....
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            45799999999999999999998532100 0                          000   01333333333444455


Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHH--H---HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS--I---VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  222 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~--~---~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~  222 (284)
                      +.+.|.|++|+..|-.-.-.-...||+.|||.|+.+.+--..  .   .+-.--|.....-.-.|++.||.|+.. -+++
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde~  163 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDEE  163 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc-cCHH
Confidence            678999999988876555556689999999999987641111  0   111111222222233479999999743 2222


Q ss_pred             cccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023316          223 LQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI  256 (284)
Q Consensus       223 ~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~l  256 (284)
                      +-..+..+...+.+..|     ++|+.+||..|+|+.+.
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            22233455555666665     56999999999998653

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.15  E-value=1e-09  Score=99.45  Aligned_cols=82  Identities=15%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCCc--
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF--  162 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~~--  162 (284)
                      ++|.++|.||||||||+|++++.+.. ..+|.++.+.....+.+.+..               ..+++.|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999998855 677755555555555554432               258899999976421  


Q ss_pred             --cccccc---ccCCcEEEEEEeCC
Q 023316          163 --DHVPIA---CKDAVAILFMFDLT  182 (284)
Q Consensus       163 --~~~~~~---~~~ad~iilv~d~~  182 (284)
                        .+...|   ++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              233333   57899999999983

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.15  E-value=1.2e-10  Score=107.57  Aligned_cols=166  Identities=22%  Similarity=0.403  Sum_probs=128.0

Q ss_pred             CCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCC
Q 023316           93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA  172 (284)
Q Consensus        93 ~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~a  172 (284)
                      .-.....++|+-++|..++|||+|+.+|+...|.....+.|..|. +.+.+++....+-+.|.+|..     -.+|....
T Consensus        23 tlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k-kE~vv~gqs~lLlirdeg~~~-----~aQft~wv   96 (749)
T KOG0705|consen   23 TLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK-KEVVVDGQSHLLLIRDEGGHP-----DAQFCQWV   96 (749)
T ss_pred             eeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccce-eeEEeeccceEeeeecccCCc-----hhhhhhhc
Confidence            334455689999999999999999999999999866667776665 556677777778888988732     34577899


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccch-HHHHHHHHHH-cCCcEEEEcCC
Q 023316          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTI-ATQARAYAKA-MKATLFFSSAT  248 (284)
Q Consensus       173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~-~~~~~~~~Sa~  248 (284)
                      |++|+||.+-+..+|+.++.....+..+.. ..++ ++++++.-    .+....+++ ..++++++.. ..+.||+++|.
T Consensus        97 davIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~----iS~~~~rv~~da~~r~l~~~~krcsy~et~at  172 (749)
T KOG0705|consen   97 DAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH----ISAKRPRVITDDRARQLSAQMKRCSYYETCAT  172 (749)
T ss_pred             cceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch----hhcccccccchHHHHHHHHhcCccceeecchh
Confidence            999999999999999999887777765532 3444 68888754    444444544 5555555544 46899999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCc
Q 023316          249 HNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~~  268 (284)
                      +|.|+...|+.+...+..+.
T Consensus       173 yGlnv~rvf~~~~~k~i~~~  192 (749)
T KOG0705|consen  173 YGLNVERVFQEVAQKIVQLR  192 (749)
T ss_pred             hhhhHHHHHHHHHHHHHHHH
Confidence            99999999999998887653

>cd00066 G-alpha G protein alpha subunit

Probab=99.14  E-value=1.2e-09  Score=98.29  Aligned_cols=121  Identities=18%  Similarity=0.236  Sum_probs=79.7

Q ss_pred             EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhH--CCCCceEEEEeCCC
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKW--NQTAIPILIGTKFD  214 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~----------~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~D  214 (284)
                      .+.+.+||++||...+..|.+++.+++++|+|+|+++-          ..+.+....++.+...  -.+.|.+|++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46688999999999999999999999999999999873          2233333333333322  12455589999999


Q ss_pred             CCCC----------CCCCcc-cchHHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          215 DFVR----------LPPDLQ-WTIATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       215 l~~~----------~~~~~~-~~~~~~~~~~a~~----------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +...          .|+... ....+.+..|...          ..+-.+.++|.+..++..+|+.+...|+..
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            5422          111111 1123333333222          123345699999999999999998888654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.13  E-value=6.4e-10  Score=98.37  Aligned_cols=116  Identities=18%  Similarity=0.145  Sum_probs=71.6

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc-------cc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PI  167 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~-------~~  167 (284)
                      +...++|+++|.+||||||++|++++.+..  +..++.+..........+|  ..+.++||+|......+.       ..
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            345789999999999999999999988743  3333333322222333455  457899999987643221       11


Q ss_pred             cc--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCC---CCceEEEEeCCCC
Q 023316          168 AC--KDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQ---TAIPILIGTKFDD  215 (284)
Q Consensus       168 ~~--~~ad~iilv~d~~~~~s~~~~-~~~~~~l~~~~~---~~~~Ilv~nK~Dl  215 (284)
                      |+  ...|++|+|..++... +.+. ...++.+.....   -...||+.|+.|.
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~  165 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF  165 (313)
T ss_pred             HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence            22  2689999996654321 2111 234444444322   2345899999996

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.13  E-value=1.9e-10  Score=86.96  Aligned_cols=137  Identities=17%  Similarity=0.181  Sum_probs=92.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccc----cccCCcEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI----ACKDAVAILF  177 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~----~~~~ad~iil  177 (284)
                      ||+++|..|+|||||.+.+.|+... +..|..+++.       +..    ..||+|.--.+..+.+    ...++|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~-------d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFN-------DKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh-hcccceeecc-------Ccc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            7999999999999999999887542 2223333332       221    4588885432232322    2468999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~l  256 (284)
                      |-.+++++|.-.     ..+..- ...+.|-|.+|.||    ++.   ...+..++|..+.|+ ++|++|+.++.||+++
T Consensus        71 v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DL----aed---~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l  137 (148)
T COG4917          71 VHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADL----AED---ADISLVKRWLREAGAEPIFETSAVDNQGVEEL  137 (148)
T ss_pred             eecccCccccCC-----cccccc-cccceEEEEecccc----cch---HhHHHHHHHHHHcCCcceEEEeccCcccHHHH
Confidence            999999876211     111111 12346889999996    321   124567788888887 6888999999999999


Q ss_pred             HHHHHHH
Q 023316          257 FKFIMAK  263 (284)
Q Consensus       257 f~~l~~~  263 (284)
                      ++.+...
T Consensus       138 ~~~L~~~  144 (148)
T COG4917         138 VDYLASL  144 (148)
T ss_pred             HHHHHhh
Confidence            9988653

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=7.9e-10  Score=102.43  Aligned_cols=154  Identities=10%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc--ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ..=|.++|.-.-|||||+..|-+.... ...-  |..+--+..++. +|+.  +.|.||+|+..|..|+..-..-+|.++
T Consensus       153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~--iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKS--ITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCE--EEEecCCcHHHHHHHHhccCccccEEE
Confidence            345889999999999999999877665 2222  222222223333 5655  558999999999999998889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCC
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHN  250 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~a~~~~--~~~~~~Sa~~~  250 (284)
                      +|....|.-.-+.    ++.|..... +.|+|+..||+|.    |+....-+..++..   ..+.+|  +..+.+||++|
T Consensus       230 LVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDk----p~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g  301 (683)
T KOG1145|consen  230 LVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDK----PGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG  301 (683)
T ss_pred             EEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCC----CCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence            9998877432222    223333233 3444789999994    43322222222221   123444  56789999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      .|++.+-+.++-.+
T Consensus       302 ~nl~~L~eaill~A  315 (683)
T KOG1145|consen  302 ENLDLLEEAILLLA  315 (683)
T ss_pred             CChHHHHHHHHHHH
Confidence            99999988877544

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.12  E-value=4.2e-10  Score=103.23  Aligned_cols=163  Identities=17%  Similarity=0.202  Sum_probs=110.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----ccccc----cc-
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVPI----AC-  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----~~~~~----~~-  169 (284)
                      .-.++|+|.||||||||++........ .+|+.++-.++...+.  -....+++.||+|.-+..    ....+    .+ 
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~d--ykYlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLD--YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhh--hheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            346899999999999999999988877 7788554444434332  234568899999965421    11111    11 


Q ss_pred             cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH-HHHHHHHHHcCCcEEEEc
Q 023316          170 KDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA-TQARAYAKAMKATLFFSS  246 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~S  246 (284)
                      .--.+++++.|++..+  |.++..++++.|+..-.+.|.|+|.||+|+   +..+.-.... +....+...-+++++++|
T Consensus       246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~---m~~edL~~~~~~ll~~~~~~~~v~v~~tS  322 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA---MRPEDLDQKNQELLQTIIDDGNVKVVQTS  322 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc---cCccccCHHHHHHHHHHHhccCceEEEec
Confidence            1124678888887654  566666888888877777788999999997   3333222222 333444445568999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCC
Q 023316          247 ATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +.+.+||-++-...+..++..
T Consensus       323 ~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  323 CVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             ccchhceeeHHHHHHHHHHHH
Confidence            999999988877777666543

>PRK00007 elongation factor G; Reviewed

Probab=99.11  E-value=6.1e-10  Score=110.05  Aligned_cols=112  Identities=16%  Similarity=0.125  Sum_probs=76.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc--CCCC-----C------------cccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG--NEQE-----R------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~--~~~~-----~------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      -.+|+++|.+++|||||+++|+.  +...     .            ....+..+.....+..++  ..+.+.||+|+.+
T Consensus        10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~   87 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVD   87 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHH
Confidence            56999999999999999999973  1100     0            112334444444555555  4577999999988


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      |.......++.+|++|+|+|......-++..-|. .+.+.  ..|.|++.||+|+.
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~--~~p~iv~vNK~D~~  140 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY--KVPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc--CCCEEEEEECCCCC
Confidence            7666666788999999999987765544434333 23322  34558999999974

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.10  E-value=3.1e-09  Score=92.19  Aligned_cols=115  Identities=19%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---c-------c
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H-------V  165 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---~-------~  165 (284)
                      ...++|+|+|.+|||||||+|.+.+....  ....+.+..........++  ..+.+|||+|......   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            34789999999999999999999998754  3333333333323334455  4577999999876521   1       1


Q ss_pred             ccccc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCC---CceEEEEeCCCC
Q 023316          166 PIACK--DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQT---AIPILIGTKFDD  215 (284)
Q Consensus       166 ~~~~~--~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~---~~~Ilv~nK~Dl  215 (284)
                      ..|+.  ..+++++|..++.. .++.+ ...++.+.+....   ...|+|.||+|.
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~  161 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAAS  161 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence            22332  57888888766543 22332 2344444443221   245899999996

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>smart00275 G_alpha G protein alpha subunit

Probab=99.05  E-value=5.1e-09  Score=95.06  Aligned_cols=121  Identities=18%  Similarity=0.220  Sum_probs=79.4

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhH--CCCCceEEEEeCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKW--NQTAIPILIGTKFDD  215 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~----------~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl  215 (284)
                      +.+.+||++|+...+..|.+++.+++++|+|.|+++-          ..+.+....++.+...  -.+.|.+|++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            4578999999999999999999999999999999863          2333333444444332  234555899999996


Q ss_pred             CCC----------CCCCcccchHHHHHHHHHH-----c------CCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316          216 FVR----------LPPDLQWTIATQARAYAKA-----M------KATLFFSSATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       216 ~~~----------~~~~~~~~~~~~~~~~a~~-----~------~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      ...          .|+..-....+.+..|...     .      .+-.+.|+|.+-.++..+|+.+...|++..
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            422          1111111123333333221     1      123456999999999999999888876543

Subunit of G proteins that contains the guanine nucleotide binding site

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.02  E-value=7.7e-09  Score=87.77  Aligned_cols=160  Identities=17%  Similarity=0.119  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-Cc--ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------ccc---
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVP---  166 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~---  166 (284)
                      ++|+|+|..|+||||++|.+++.... ..  ..+...........++|..  +.++||+|.-....        +..   
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            68999999999999999999998754 22  1222333444445778866  56999999643221        111   


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCC---CceEEEEeCCCCCCCCCCCc-ccch----HHHHHHHHHHc
Q 023316          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT---AIPILIGTKFDDFVRLPPDL-QWTI----ATQARAYAKAM  238 (284)
Q Consensus       167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~---~~~Ilv~nK~Dl~~~~~~~~-~~~~----~~~~~~~a~~~  238 (284)
                      ....+.+++|+|+..+ +-+-++.. .++.+.+.-+.   .-.|||.|..|.   +.+.. ....    ....+++.+..
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~-~l~~l~~~FG~~~~k~~ivvfT~~d~---~~~~~~~~~l~~~~~~~l~~li~~c  153 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDRE-VLELLQEIFGEEIWKHTIVVFTHADE---LEDDSLEDYLKKESNEALQELIEKC  153 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHH-HHHHHHHHHCGGGGGGEEEEEEEGGG---GTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccCCCeEEEEEEecC-cchHHHHH-HHHHHHHHccHHHHhHhhHHhhhccc---cccccHHHHHhccCchhHhHHhhhc
Confidence            1245789999999988 44433322 22333332221   234788888884   22221 1111    13356777788


Q ss_pred             CCcEEEEcCC------CCcCHHHHHHHHHHHHhCC
Q 023316          239 KATLFFSSAT------HNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       239 ~~~~~~~Sa~------~~~~v~~lf~~l~~~i~~~  267 (284)
                      +-.|+..+.+      ....+.++|+.+-..+..+
T Consensus       154 ~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  154 GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            8888887666      2345788888877766544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.00  E-value=8.3e-09  Score=94.17  Aligned_cols=161  Identities=16%  Similarity=0.175  Sum_probs=111.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC--CCC------------ccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE--QER------------SLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV  165 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~--~~~------------~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~  165 (284)
                      -+|+++-.---|||||+..++...  |..            +.. --|+++..+...++-..+.+.+.||+|+-+|....
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            479999999999999999997643  221            001 22555655544443334668899999999999999


Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-------c
Q 023316          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------M  238 (284)
Q Consensus       166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-------~  238 (284)
                      ...++-.|++++++|+....--+ .+..++...  ...-+||+|.||+|    .|..+...+.++...+.-.       +
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl--~~gL~PIVVvNKiD----rp~Arp~~Vvd~vfDLf~~L~A~deQL  158 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKAL--ALGLKPIVVINKID----RPDARPDEVVDEVFDLFVELGATDEQL  158 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCc-hhhhHHHHH--HcCCCcEEEEeCCC----CCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence            99999999999999997643211 122233222  23557899999999    4555444445555554433       4


Q ss_pred             CCcEEEEcCCCCc----------CHHHHHHHHHHHHhCCc
Q 023316          239 KATLFFSSATHNI----------NVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       239 ~~~~~~~Sa~~~~----------~v~~lf~~l~~~i~~~~  268 (284)
                      .++++..|+.+|.          ++..+|+.|+..+....
T Consensus       159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            5788888988653          58889999998886554

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.97  E-value=5.4e-09  Score=94.00  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  227 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~  227 (284)
                      +.+.|.||+|.......   ....+|.++++.+....+....+.   ..+.+..    -|+|.||+|+.   +.......
T Consensus       149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~a----DIiVVNKaDl~---~~~~a~~~  215 (332)
T PRK09435        149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMELA----DLIVINKADGD---NKTAARRA  215 (332)
T ss_pred             CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhhh----heEEeehhccc---chhHHHHH
Confidence            56789999998743322   466899999997644444443322   2122211    28999999962   21111111


Q ss_pred             HHHHHHHHHH-------cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          228 ATQARAYAKA-------MKATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       228 ~~~~~~~a~~-------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      ..+.+.....       +..+++.+||+++.|++++++.+.+.+-
T Consensus       216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            2233332222       2257999999999999999999988653

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.94  E-value=2.8e-08  Score=84.00  Aligned_cols=148  Identities=12%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC-CC--C-----Cccccccee------eeeEEEEE-CC-------------------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN-EQ--E-----RSLQMAGLN------LINKTLMV-QG-------------------  145 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~-~~--~-----~~~~t~~~~------~~~~~~~~-~~-------------------  145 (284)
                      ...|.++|..|+|||||+++++.. ..  .     ... ..+.|      .....+.+ +|                   
T Consensus        22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~-~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV-ITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC-CCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            467889999999999999999754 11  0     000 00000      00011111 11                   


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW  225 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~  225 (284)
                      ....+.+.+|.|.-...   ..+....+..+.|+|+++.+....  . ...+    ...+.++++||+|+.   +.. . 
T Consensus       101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~----~~~a~iiv~NK~Dl~---~~~-~-  165 (207)
T TIGR00073       101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--K-YPGM----FKEADLIVINKADLA---EAV-G-  165 (207)
T ss_pred             CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--h-hHhH----HhhCCEEEEEHHHcc---ccc-h-
Confidence            12345677777721100   111123455567788775543111  0 0111    123448999999972   111 1 


Q ss_pred             chHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          226 TIATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       226 ~~~~~~~~~a~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      ....+..+..++.  .++++++||+++.|++++|+++.+.
T Consensus       166 ~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            1122233333333  3889999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.93  E-value=3.2e-08  Score=83.91  Aligned_cols=152  Identities=18%  Similarity=0.262  Sum_probs=106.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-------cccccccC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------HVPIACKD  171 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-------~~~~~~~~  171 (284)
                      ..+|+++|.|+||||||+..+..-... ..|.-+..+.....+.++|..  +++.|.+|.-.-.+       ..-...+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence            368999999999999999999887776 777777777778888999977  56999999654221       22234578


Q ss_pred             CcEEEEEEeCCChhhHHH-HHHHHHHHH----hHCCC-------------------------------------------
Q 023316          172 AVAILFMFDLTSRCTLNS-IVGWYSEAR----KWNQT-------------------------------------------  203 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~-~~~~~~~l~----~~~~~-------------------------------------------  203 (284)
                      ||.+++|.|.+..+.-.+ +.+-++..-    +..++                                           
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            999999999987654322 222222210    00000                                           


Q ss_pred             ----------------C--ce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          204 ----------------A--IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       204 ----------------~--~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                                      .  .+ +-|.||+|.          +..++...+|++-+  -+.+|+.-+-|++.+++.+...+
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~----------vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ----------VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccce----------ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHh
Confidence                            0  12 457888882          23566777777655  45678899999999999999876


Q ss_pred             h
Q 023316          265 F  265 (284)
Q Consensus       265 ~  265 (284)
                      -
T Consensus       288 ~  288 (364)
T KOG1486|consen  288 N  288 (364)
T ss_pred             c
Confidence            3

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.91  E-value=1.3e-08  Score=90.16  Aligned_cols=151  Identities=13%  Similarity=0.089  Sum_probs=96.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC---Cc----------cccc---------------------ceeeeeEEEEEC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE---RS----------LQMA---------------------GLNLINKTLMVQ  144 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~----------~~t~---------------------~~~~~~~~~~~~  144 (284)
                      ..++.+-+|.---|||||+-||+.+.-.   ..          ..+.                     ++|.-.+.  +.
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy--Fs   82 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY--FS   82 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee--cc
Confidence            3689999999999999999999755311   00          0111                     12222121  12


Q ss_pred             CeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316          145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ  224 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~  224 (284)
                      -.+-+|.+-||+|+++|..-.-.-...||+.|++.|.-.  ...+..+-...|...-.-...||..||+||.+ .+++.-
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvd-y~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLGIRHVVVAVNKMDLVD-YSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhCCcEEEEEEeeecccc-cCHHHH
Confidence            334568899999999997665556678999999999843  22222111222222223334479999999721 122222


Q ss_pred             cchHHHHHHHHHHcCC---cEEEEcCCCCcCHH
Q 023316          225 WTIATQARAYAKAMKA---TLFFSSATHNINVN  254 (284)
Q Consensus       225 ~~~~~~~~~~a~~~~~---~~~~~Sa~~~~~v~  254 (284)
                      ..+..+-..|+.++++   .++.+||..|+||-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            3346677888999885   58889999999974

>cd01882 BMS1 Bms1

Probab=98.90  E-value=2.2e-08  Score=85.82  Aligned_cols=140  Identities=16%  Similarity=0.224  Sum_probs=81.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ...|+++|.+|+|||||++.+.+..-.... ...|. +   ++ .......+.++||+|.-  ..+. ...+.+|+++++
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv  110 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL  110 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence            567999999999999999999865221111 11121 1   11 11233456799999864  2222 235789999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHH-HHHH--cCCcEEEEcCCCCcC
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARA-YAKA--MKATLFFSSATHNIN  252 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~a~~--~~~~~~~~Sa~~~~~  252 (284)
                      +|.+....... ..++..+...  ..|. |+|.||+|+.+  +.+......+++++ +..+  .+.+++.+||+++..
T Consensus       111 iDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~--~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         111 IDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFK--KNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCC--cHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            99976544322 2333434332  2343 46999999631  11111122333333 3322  246899999998744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.88  E-value=2.1e-08  Score=99.86  Aligned_cols=113  Identities=12%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--C----------ccc-----ccceeee--eEEEEECCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--R----------SLQ-----MAGLNLI--NKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~----------~~~-----t~~~~~~--~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      ..+|+++|..++|||||+.+++...-.  .          ..+     .+..+..  ...+..++....+.+.||+|+.+
T Consensus        20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d   99 (731)
T PRK07560         20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD   99 (731)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence            457999999999999999999753211  0          000     1111111  11222355567888999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |.......++.+|++|+|+|.......+...-|.... +.  ..++|++.||+|+
T Consensus       100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~-~~--~~~~iv~iNK~D~  151 (731)
T PRK07560        100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL-RE--RVKPVLFINKVDR  151 (731)
T ss_pred             hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH-Hc--CCCeEEEEECchh
Confidence            9888888899999999999987764444333444322 22  3456899999995

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.88  E-value=9.7e-08  Score=87.01  Aligned_cols=154  Identities=10%  Similarity=0.106  Sum_probs=94.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC----CCC-------------Ccc-----cccceee---eeEEEEE-CCeEEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN----EQE-------------RSL-----QMAGLNL---INKTLMV-QGARIAFSIW  153 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~----~~~-------------~~~-----~t~~~~~---~~~~~~~-~~~~~~l~l~  153 (284)
                      .+-|.|+|+.++|||||+++|.+.    ...             ++.     .|+.+-|   ....+.. ++....+.+.
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            678999999999999999999877    222             111     1233333   2233322 4566778899


Q ss_pred             eCCCCcCCccc-----------------------------cccccc-CCcEEEEEE-eCC----ChhhHHHH-HHHHHHH
Q 023316          154 DVGGDSRSFDH-----------------------------VPIACK-DAVAILFMF-DLT----SRCTLNSI-VGWYSEA  197 (284)
Q Consensus       154 Dt~G~e~~~~~-----------------------------~~~~~~-~ad~iilv~-d~~----~~~s~~~~-~~~~~~l  197 (284)
                      ||+|-..-..+                             ++..+. .++..|+|. |.+    .++.+.+. ..|++++
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            99996542111                             122344 888888888 663    23344443 3788888


Q ss_pred             HhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC--CcCHHHHHHHHHH
Q 023316          198 RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH--NINVNKIFKFIMA  262 (284)
Q Consensus       198 ~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~--~~~v~~lf~~l~~  262 (284)
                      ++.  +.|.|+|.||.|-      . .....+...++.+.++++++.+|+..  .+.+..+|+.+..
T Consensus       177 k~~--~kPfiivlN~~dp------~-~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHP------Y-HPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             Hhc--CCCEEEEEECcCC------C-CchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence            664  4466899999992      1 11123344566777899988888763  2344555544443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.4e-08  Score=96.94  Aligned_cols=158  Identities=17%  Similarity=0.189  Sum_probs=102.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc----ccceeeeeEE----------------EEECCeEEEEEEEeC
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ----MAGLNLINKT----------------LMVQGARIAFSIWDV  155 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~----t~~~~~~~~~----------------~~~~~~~~~l~l~Dt  155 (284)
                      +.+..-|+++|.-.+|||-|+..+-+.... ....    .+|.+|....                +.+.|    +.++||
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg----~lvIdt  547 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG----LLVIDT  547 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe----eEEecC
Confidence            455567999999999999999999775544 2222    3344443221                22222    568899


Q ss_pred             CCCcCCcccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC-C--CCCCC-------
Q 023316          156 GGDSRSFDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF-V--RLPPD-------  222 (284)
Q Consensus       156 ~G~e~~~~~~~~~~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~-~--~~~~~-------  222 (284)
                      +|++.|..++......||.+|+|.|+..   +.+.+++    +.|+.  ...|.||..||+|.- .  ..+..       
T Consensus       548 pghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lk  621 (1064)
T KOG1144|consen  548 PGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALK  621 (1064)
T ss_pred             CCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence            9999999999999999999999999975   3444443    22332  245669999999941 0  01110       


Q ss_pred             --cccch-------HHHHHHHHHH-cC-------------CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          223 --LQWTI-------ATQARAYAKA-MK-------------ATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       223 --~~~~~-------~~~~~~~a~~-~~-------------~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                        ...+.       .....+|+++ ++             +.++.|||.+|+||.+++.+|+...
T Consensus       622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt  686 (1064)
T KOG1144|consen  622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT  686 (1064)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence              00000       1112333332 11             3456699999999999999988754

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.3e-07  Score=84.80  Aligned_cols=83  Identities=16%  Similarity=0.162  Sum_probs=60.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC----------------eEEEEEEEeCCCCcC--
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG----------------ARIAFSIWDVGGDSR--  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~----------------~~~~l~l~Dt~G~e~--  160 (284)
                      .+++-++|.||||||||.|.++..... .+||-.+++-....+.+..                ....+++.|+||...  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999999866 7888333332222322211                135689999998765  


Q ss_pred             --Ccccccccc---cCCcEEEEEEeCC
Q 023316          161 --SFDHVPIAC---KDAVAILFMFDLT  182 (284)
Q Consensus       161 --~~~~~~~~~---~~ad~iilv~d~~  182 (284)
                        -..+...|+   +.+|+++.|+|+.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              456777774   7899999999875

>cd01855 YqeH YqeH

Probab=98.80  E-value=1.7e-08  Score=84.08  Aligned_cols=94  Identities=14%  Similarity=0.185  Sum_probs=63.8

Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----  235 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-----  235 (284)
                      +..+...+++++|++++|+|+++...     .|...+.......++|+|+||+|+.   +.+.   ..+....+.     
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~---~~~~---~~~~~~~~~~~~~~   92 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLL---PKDK---NLVRIKNWLRAKAA   92 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcC---CCCC---CHHHHHHHHHHHHH
Confidence            46777889999999999999987642     2333332223345668999999972   2211   122233332     


Q ss_pred             HHcCC---cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          236 KAMKA---TLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       236 ~~~~~---~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +..+.   +++.+||+++.|++++++.+...+.
T Consensus        93 ~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          93 AGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             hhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            23333   6899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.79  E-value=1.7e-07  Score=89.89  Aligned_cols=182  Identities=15%  Similarity=0.099  Sum_probs=101.3

Q ss_pred             HHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcccccccccCCCCCCCCCccccccccccccc
Q 023316            7 EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSR   86 (284)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (284)
                      +..+++-.+=.|..+.=-|-+..++-.+..|.+-++.   | +.++..+ ..+-   ..        .+.....  .   
T Consensus        48 ~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~---l-~~~~~~~-~~~s---~d--------~a~~~a~--~---  106 (763)
T TIGR00993        48 EKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLG---L-LAGRQGG-GAFS---LD--------AAKAMAE--Q---  106 (763)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHH---H-hhccCcc-cccc---ch--------hhHHHHh--h---
Confidence            4445555566666666677777777778877776643   2 2222221 0000   00        0000000  0   


Q ss_pred             ccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCC-C-Ccc-c-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316           87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus        87 ~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~-~-~~~-~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                        ........-...++|+|+|.+||||||++|.+++.+. . ... + |+.  .......++|.  .+.++||+|.....
T Consensus       107 --~ea~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG~--~L~VIDTPGL~dt~  180 (763)
T TIGR00993       107 --LEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQGV--KIRVIDTPGLKSSA  180 (763)
T ss_pred             --hhhhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECCc--eEEEEECCCCCccc
Confidence              0000111112368999999999999999999999863 3 322 2 332  22222344554  47799999987642


Q ss_pred             c-------c---cccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC---ceEEEEeCCCC
Q 023316          163 D-------H---VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA---IPILIGTKFDD  215 (284)
Q Consensus       163 ~-------~---~~~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~---~~Ilv~nK~Dl  215 (284)
                      .       +   ...++.  .+|++|+|..++......+-..+++.|.+.....   -.|||.|+.|.
T Consensus       181 ~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~  248 (763)
T TIGR00993       181 SDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS  248 (763)
T ss_pred             cchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence            1       1   111333  5899999998764433222235666666554433   33899999996

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.77  E-value=2.2e-08  Score=91.69  Aligned_cols=98  Identities=16%  Similarity=0.234  Sum_probs=71.6

Q ss_pred             CcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cchHHHHHHHHH
Q 023316          158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYAK  236 (284)
Q Consensus       158 ~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a~  236 (284)
                      +++|..+...+++.++++++|+|+.+..     ..|.+++.+.....++++|+||+||   ++.... ....+..+++++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DL---l~k~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDL---LPKSVNLSKIKEWMKKRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhh---CCCCCCHHHHHHHHHHHHH
Confidence            4567888888999999999999997654     2466666666555566899999997   332211 111233345567


Q ss_pred             HcCC---cEEEEcCCCCcCHHHHHHHHHHH
Q 023316          237 AMKA---TLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       237 ~~~~---~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      ..++   .++++||++|.|++++|+.+...
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            7776   48899999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01900 YchF YchF subfamily

Probab=98.77  E-value=3.9e-08  Score=86.31  Aligned_cols=79  Identities=14%  Similarity=0.144  Sum_probs=58.6

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCC----c
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS----F  162 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~----~  162 (284)
                      |.++|.||||||||+|++++.+.. ..++.++.+.....+.+.+..               ..+++.|++|..+-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            578999999999999999998876 677755555555556665532               25889999997642    2


Q ss_pred             cccccc---ccCCcEEEEEEeC
Q 023316          163 DHVPIA---CKDAVAILFMFDL  181 (284)
Q Consensus       163 ~~~~~~---~~~ad~iilv~d~  181 (284)
                      .+...|   ++.+|++++|+|+
T Consensus        81 glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeC
Confidence            233344   4689999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PTZ00416 elongation factor 2; Provisional

Probab=98.76  E-value=2.6e-08  Score=100.31  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--Cccc---------------ccceeeeeEEEEEC--------CeEEEEEEEe
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ---------------MAGLNLINKTLMVQ--------GARIAFSIWD  154 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~---------------t~~~~~~~~~~~~~--------~~~~~l~l~D  154 (284)
                      ..+|+++|..++|||||+.+|+...-.  ....               .+..+.....+.++        +....+.+.|
T Consensus        19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD   98 (836)
T PTZ00416         19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID   98 (836)
T ss_pred             cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence            348999999999999999999863211  0000               11111111222232        2256788999


Q ss_pred             CCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       155 t~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |+|+.+|.......++.+|++|+|+|....-..+...-| ..+...  ..|.|++.||+|+
T Consensus        99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~  156 (836)
T PTZ00416         99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDR  156 (836)
T ss_pred             CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhh
Confidence            999999887778888999999999999876544433333 333322  3455899999996

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.76  E-value=2.5e-08  Score=100.52  Aligned_cols=113  Identities=15%  Similarity=0.186  Sum_probs=76.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--Ccc----------c---ccceeee--eEEEEE--------------CCeEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSL----------Q---MAGLNLI--NKTLMV--------------QGARI  148 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~----------~---t~~~~~~--~~~~~~--------------~~~~~  148 (284)
                      -.+|+++|..++|||||+.+++...-.  ...          +   ..|..+.  ...+.+              .+...
T Consensus        19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (843)
T PLN00116         19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY   98 (843)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence            468999999999999999999754311  000          0   0011111  112222              12356


Q ss_pred             EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      .+.+.||+|+.+|.......++.+|++|+|+|+...-......-|.....   ...|.|++.||+|+
T Consensus        99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~---~~~p~i~~iNK~D~  162 (843)
T PLN00116         99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDR  162 (843)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH---CCCCEEEEEECCcc
Confidence            78899999999998888888899999999999987755444444443322   23455899999996

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=1.5e-07  Score=83.07  Aligned_cols=163  Identities=17%  Similarity=0.216  Sum_probs=101.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC----CC-Ccc---cccceeeeeEEEEE-------CCeEEEEEEEeCCCCcCCcc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE----QE-RSL---QMAGLNLINKTLMV-------QGARIAFSIWDVGGDSRSFD  163 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~----~~-~~~---~t~~~~~~~~~~~~-------~~~~~~l~l~Dt~G~e~~~~  163 (284)
                      ..+++-++|.-.+|||+|..++..-.    |. ...   ..+..|..-..+.+       .++.+++.+.|++|+...  
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL--   83 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL--   83 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH--
Confidence            35899999999999999999995422    22 111   12233332223332       356788999999998653  


Q ss_pred             ccccccc---CCcEEEEEEeCCChhhHHHHHH-HHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc-chHHHHHHHHHHc
Q 023316          164 HVPIACK---DAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW-TIATQARAYAKAM  238 (284)
Q Consensus       164 ~~~~~~~---~ad~iilv~d~~~~~s~~~~~~-~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~a~~~  238 (284)
                       .+..+.   -.|..++|.|+.....-+..+- .+-++.    ....|+|.||+|+   +++..+. .+++..+.+.+.+
T Consensus        84 -IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~---lpE~qr~ski~k~~kk~~KtL  155 (522)
T KOG0461|consen   84 -IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDV---LPENQRASKIEKSAKKVRKTL  155 (522)
T ss_pred             -HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEecccc---ccchhhhhHHHHHHHHHHHHH
Confidence             333333   4577799999976543333221 222221    2234788999996   5553322 2244444444432


Q ss_pred             -------CCcEEEEcCCCC----cCHHHHHHHHHHHHhCCcccc
Q 023316          239 -------KATLFFSSATHN----INVNKIFKFIMAKLFNLPWTV  271 (284)
Q Consensus       239 -------~~~~~~~Sa~~~----~~v~~lf~~l~~~i~~~~~~~  271 (284)
                             +.|++++||..|    +++.++-+.+-..+++.....
T Consensus       156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~  199 (522)
T KOG0461|consen  156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE  199 (522)
T ss_pred             HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence                   278999999999    888888888888887665443

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.75  E-value=3.1e-08  Score=80.47  Aligned_cols=62  Identities=13%  Similarity=0.046  Sum_probs=44.7

Q ss_pred             EEEEeCCCCcC----CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCC
Q 023316          150 FSIWDVGGDSR----SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF  213 (284)
Q Consensus       150 l~l~Dt~G~e~----~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~  213 (284)
                      +.|+||+|...    ...++..|+..+|++|+|.+.+...+-.+...|.+......  ...|+|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~--~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK--SRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC--SSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC--CeEEEEEcCC
Confidence            78999999754    23567778899999999999998766566666665554332  2357888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.74  E-value=1.4e-07  Score=83.41  Aligned_cols=140  Identities=17%  Similarity=0.235  Sum_probs=77.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-Cc--c--------cccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc----
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS--L--------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----  164 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~--~--------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~----  164 (284)
                      .++|+|+|..|+|||||+|.|++.... ..  .        .+..+......+.-++..+.+.++||+|.......    
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            689999999999999999999987654 21  1        12223333334445788899999999995431110    


Q ss_pred             ---------------------cc--ccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          165 ---------------------VP--IACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       165 ---------------------~~--~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                                           .+  ..=...|++|++.+.+... +-.++ ..+++|   .....+|-|..|.|.   +.
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~L---s~~vNvIPvIaKaD~---lt  156 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRL---SKRVNVIPVIAKADT---LT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHH---TTTSEEEEEESTGGG---S-
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHh---cccccEEeEEecccc---cC
Confidence                                 00  0013568999999876532 21222 233444   444455789999996   44


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      .+......+....-.+.+++.+|...
T Consensus       157 ~~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  157 PEELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHHHcCceeeccc
Confidence            33222335555666677788776533

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=4.6e-08  Score=82.44  Aligned_cols=169  Identities=21%  Similarity=0.247  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEE--EECCeEEEEEEEeCCCCcCCcccc---cccccCCcEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTL--MVQGARIAFSIWDVGGDSRSFDHV---PIACKDAVAI  175 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~l~l~Dt~G~e~~~~~~---~~~~~~ad~i  175 (284)
                      .+|+++|...+||||+-.-...+-  +...|.-.+...+..  .+.+.-+.|++||.+||-.+..-.   ...++++-+.
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkM--sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKM--SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             ceEEEEeecccCcchhhheeeecc--CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            359999999999999944433222  111233322222211  122345779999999998865432   3457899999


Q ss_pred             EEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc----ccchHHHHHH-HHH----HcCCcEEE
Q 023316          176 LFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----QWTIATQARA-YAK----AMKATLFF  244 (284)
Q Consensus       176 ilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~----~~~~~~~~~~-~a~----~~~~~~~~  244 (284)
                      |+|.|..+..  .+..+........+-+++.-.=+...|.|-   ++++.    ++.+.+...+ ++.    ...+.|+-
T Consensus       106 ifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDG---Lsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L  182 (347)
T KOG3887|consen  106 IFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG---LSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL  182 (347)
T ss_pred             EEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC---CchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence            9999986542  222222222222222333332388899993   44332    2323222222 222    23356777


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCcccccccc
Q 023316          245 SSATHNINVNKIFKFIMAKLFNLPWTVKRNL  275 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~  275 (284)
                      ||.. .+.+-|+|..+++.+...-.+.|+-+
T Consensus       183 TSIy-DHSIfEAFSkvVQkLipqLptLEnlL  212 (347)
T KOG3887|consen  183 TSIY-DHSIFEAFSKVVQKLIPQLPTLENLL  212 (347)
T ss_pred             eeec-chHHHHHHHHHHHHHhhhchhHHHHH
Confidence            8876 67899999999999887776666543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.72  E-value=2.4e-07  Score=82.79  Aligned_cols=105  Identities=11%  Similarity=0.002  Sum_probs=61.0

Q ss_pred             EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  226 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~  226 (284)
                      .+.+.|.||+|.-...   ......+|.++++-+.   .+-+++....+.+.    ..+.++|.||+|+.   +......
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~----~~~~ivv~NK~Dl~---~~~~~~~  192 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGLM----EIADIYVVNKADGE---GATNVTI  192 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHHh----hhccEEEEEccccc---chhHHHH
Confidence            3567899999854211   1245677888887443   33344443333332    23448999999962   1111111


Q ss_pred             hHHH----HHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          227 IATQ----ARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       227 ~~~~----~~~~a~~---~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      ....    ...+.+.   +..+++.+||+++.|++++++++....
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            0111    1111111   224689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.72  E-value=8.4e-09  Score=88.95  Aligned_cols=112  Identities=11%  Similarity=0.129  Sum_probs=54.1

Q ss_pred             EEEEEeCCCCcCCcccccccc--------cCCcEEEEEEeCCChhhHH-HHHHHHHHHHhH-CCCCceEEEEeCCCCCCC
Q 023316          149 AFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLTSRCTLN-SIVGWYSEARKW-NQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~~~~~--------~~ad~iilv~d~~~~~s~~-~~~~~~~~l~~~-~~~~~~Ilv~nK~Dl~~~  218 (284)
                      .+.++||+||.++...+....        ...-+++++.|.....+-. -+..++-.+... ..+-|.|.|.||+||.  
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~--  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL--  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS--
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc--
Confidence            577999999998654444322        3455788888875433211 122333332211 2245669999999973  


Q ss_pred             CCCCcccc-----------------hHHHHHHHHHH---cC-C-cEEEEcCCCCcCHHHHHHHHHHH
Q 023316          219 LPPDLQWT-----------------IATQARAYAKA---MK-A-TLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       219 ~~~~~~~~-----------------~~~~~~~~a~~---~~-~-~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                       ++.....                 ...-.+++++-   ++ + .++.+|+.+++++.+++..+-+.
T Consensus       170 -~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  170 -SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             --HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             -cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence             2110000                 00111122222   23 3 68899999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.68  E-value=1e-07  Score=85.03  Aligned_cols=86  Identities=14%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             cccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          168 ACKDAVAILFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~-~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      ...++|++++|+|+++++++.. +..|+..+..  ...++++|+||+||.    +.  .....+.....+..+.+++++|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~----~~--~~~~~~~~~~~~~~g~~v~~vS  148 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL----DD--LEEARELLALYRAIGYDVLELS  148 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC----CC--HHHHHHHHHHHHHCCCeEEEEe
Confidence            3589999999999998876544 4688877654  345678999999972    11  1112334455566788999999


Q ss_pred             CCCCcCHHHHHHHHH
Q 023316          247 ATHNINVNKIFKFIM  261 (284)
Q Consensus       247 a~~~~~v~~lf~~l~  261 (284)
                      |+++.|++++++.+.
T Consensus       149 A~~g~gi~~L~~~l~  163 (298)
T PRK00098        149 AKEGEGLDELKPLLA  163 (298)
T ss_pred             CCCCccHHHHHhhcc
Confidence            999999999998764

>PRK12289 GTPase RsgA; Reviewed

Probab=98.68  E-value=1.4e-07  Score=85.85  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             CCcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc
Q 023316          160 RSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM  238 (284)
Q Consensus       160 ~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~  238 (284)
                      +...+.+..+.++|.+++|+|+.++. ++..+..|+..+.  ....++|||+||+||   .++.   . .+......+..
T Consensus        78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~--~~~ip~ILVlNK~DL---v~~~---~-~~~~~~~~~~~  148 (352)
T PRK12289         78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE--STGLEIVLCLNKADL---VSPT---E-QQQWQDRLQQW  148 (352)
T ss_pred             cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH--HCCCCEEEEEEchhc---CChH---H-HHHHHHHHHhc
Confidence            33455666789999999999998876 4556778887663  235677999999997   2211   1 12223333567


Q ss_pred             CCcEEEEcCCCCcCHHHHHHHHHH
Q 023316          239 KATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       239 ~~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      |.+++.+||.++.|++++++.+..
T Consensus       149 g~~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        149 GYQPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             CCeEEEEEcCCCCCHHHHhhhhcc
Confidence            889999999999999999988864

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=7.2e-08  Score=84.43  Aligned_cols=168  Identities=15%  Similarity=0.151  Sum_probs=106.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC---CCCccc---ccceeeeeE------------EEEE------CC----eEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE---QERSLQ---MAGLNLINK------------TLMV------QG----ARIAF  150 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~---~~~~~~---t~~~~~~~~------------~~~~------~~----~~~~l  150 (284)
                      .+++|-++|.-.-|||||+..+.+--   +++...   |+..-|...            .+..      .|    -.-.+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            47899999999999999999997532   211110   111101000            0000      11    11347


Q ss_pred             EEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHH
Q 023316          151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ  230 (284)
Q Consensus       151 ~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~  230 (284)
                      .+.|.+|+|-.-...-.-..-.|+.|+|...+.++.--...+-+-.+.-- .-.-+|++-||+||   ...++..+..++
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDl---V~~E~AlE~y~q  164 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDL---VSRERALENYEQ  164 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccce---ecHHHHHHHHHH
Confidence            89999999874332222223458999999998776543333333333222 22344799999998   444444455777


Q ss_pred             HHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023316          231 ARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       231 ~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~  270 (284)
                      +++|.+--   +++++.+||..+.|++-+++.|...|...+..
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence            77777643   68999999999999999999999998765543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.63  E-value=2.3e-07  Score=82.35  Aligned_cols=88  Identities=11%  Similarity=0.125  Sum_probs=67.1

Q ss_pred             cccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316          166 PIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       166 ~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                      ...+.++|.+++|+|++++. ++..+.+|+..+...  +.++++|+||+||.   ++  .  .......+....+.+++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~---~~--~--~~~~~~~~~~~~g~~v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLL---DD--E--EEELELVEALALGYPVLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCC---Ch--H--HHHHHHHHHHhCCCeEEE
Confidence            34578999999999999988 888889998877643  46779999999972   22  1  112223344557889999


Q ss_pred             EcCCCCcCHHHHHHHHHH
Q 023316          245 SSATHNINVNKIFKFIMA  262 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~  262 (284)
                      +||+++.|+++++..+..
T Consensus       144 vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         144 VSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EECCCCccHHHHHhhhcc
Confidence            999999999999887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.62  E-value=3.6e-07  Score=78.57  Aligned_cols=117  Identities=11%  Similarity=0.065  Sum_probs=61.0

Q ss_pred             EEEEEEEeCCCCcC-Cc-----cccccccc--CCcEEEEEEeCC---ChhhHHHHHHHHHHHH-hHCCCCceEEEEeCCC
Q 023316          147 RIAFSIWDVGGDSR-SF-----DHVPIACK--DAVAILFMFDLT---SRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFD  214 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~-~~-----~~~~~~~~--~ad~iilv~d~~---~~~s~~~~~~~~~~l~-~~~~~~~~Ilv~nK~D  214 (284)
                      .....+.||+||-+ |.     .+.-..+.  ..-+++++.|.-   ++.+|=+  ..+-... -+...-|.|++.||+|
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS--NMlYAcSilyktklp~ivvfNK~D  192 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS--NMLYACSILYKTKLPFIVVFNKTD  192 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH--HHHHHHHHHHhccCCeEEEEeccc
Confidence            35578999999976 22     12222222  334556666653   3344422  2211111 1223344589999999


Q ss_pred             CCCCCCCCcccch-HHHHHHHHH-------------------H--cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          215 DFVRLPPDLQWTI-ATQARAYAK-------------------A--MKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       215 l~~~~~~~~~~~~-~~~~~~~a~-------------------~--~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      +.+.- -...|.. .+..++...                   +  .++..+-+|+.+|.|.+++|..+-..+-+
T Consensus       193 v~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  193 VSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             ccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            62110 0012221 111111000                   1  14677889999999999999988766543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.62  E-value=3e-07  Score=83.57  Aligned_cols=88  Identities=10%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      ..++|.+++|++++...++..+..|+..+..  ...++|||+||+||   .++. ......+.....+..+.+++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL---~~~~-~~~~~~~~~~~y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDL---LDDE-GRAFVNEQLDIYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccC---CCcH-HHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3569999999999988899999999876543  34677999999997   2322 1111223333445678899999999


Q ss_pred             CCcCHHHHHHHHHH
Q 023316          249 HNINVNKIFKFIMA  262 (284)
Q Consensus       249 ~~~~v~~lf~~l~~  262 (284)
                      ++.|++++++.+..
T Consensus       192 tg~GideL~~~L~~  205 (347)
T PRK12288        192 TGEGLEELEAALTG  205 (347)
T ss_pred             CCcCHHHHHHHHhh
Confidence            99999999998865

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.60  E-value=9.6e-08  Score=75.68  Aligned_cols=134  Identities=17%  Similarity=0.192  Sum_probs=73.9

Q ss_pred             HHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHH--HHHHhhhccCCCCccccc--ccccCCCCCCCCCccccccc
Q 023316            5 IHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFI--WERILVCSIGKQPAVRYQ--KLTRRSSSESSPAPDTMEAG   80 (284)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   80 (284)
                      .+++.+++.+....++.+|.|.....+...+.+++...  ...++++-++..-.....  .......          ..+
T Consensus         2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~----------~~~   71 (141)
T cd01857           2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFK----------KEG   71 (141)
T ss_pred             HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHH----------hcC
Confidence            35777888888888889999988777765566555543  223333333222100000  0000000          000


Q ss_pred             ccccccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316           81 LVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (284)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e  159 (284)
                      .. . -..+.  ...    .-+++++|.+|||||||+|++.+.+........|.+.....+.+++   .+.+|||+|..
T Consensus        72 ~~-i-i~iSa--~~~----~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~  139 (141)
T cd01857          72 IV-V-VFFSA--LKE----NATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGLV  139 (141)
T ss_pred             Ce-E-EEEEe--cCC----CcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence            00 0 00000  000    1189999999999999999999988652222333333444555654   36799999963

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.57  E-value=2e-07  Score=83.76  Aligned_cols=122  Identities=20%  Similarity=0.265  Sum_probs=78.2

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhH-------HHHH---HHHHHHHhH--CCCCceEEEEeCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL-------NSIV---GWYSEARKW--NQTAIPILIGTKFDD  215 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~-------~~~~---~~~~~l~~~--~~~~~~Ilv~nK~Dl  215 (284)
                      ..+.++|++||...+.-|-+++.+++++|+|.+++.-+..       +.+.   ...+.+-..  -.+..+||..||.||
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            5688999999998888999999999999999998763321       1121   222222211  224566899999997


Q ss_pred             CCC----------CCCCcccchHHHHHHHHH--------Hc--CCcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          216 FVR----------LPPDLQWTIATQARAYAK--------AM--KATLFFSSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       216 ~~~----------~~~~~~~~~~~~~~~~a~--------~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      +..          +|+-.-....+++..+.+        ..  .+=.+.+.|.+-.||+.+|+.+...|.....
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence            532          111111112334433322        11  1223458999999999999999998876543

>cd01859 MJ1464 MJ1464

Probab=98.56  E-value=2e-07  Score=75.01  Aligned_cols=94  Identities=12%  Similarity=0.041  Sum_probs=62.4

Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT  241 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~  241 (284)
                      +.+.++.++++|++|+|+|++++.+..+ ..+...+..  ...|+|+|+||+|+   .+..   . .+....+.+..+.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl---~~~~---~-~~~~~~~~~~~~~~   72 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE--LGKKLLIVLNKADL---VPKE---V-LEKWKSIKESEGIP   72 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh--CCCcEEEEEEhHHh---CCHH---H-HHHHHHHHHhCCCc
Confidence            3456677889999999999987654322 122222221  24566899999996   2111   1 11122344446778


Q ss_pred             EEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          242 LFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       242 ~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      ++.+||+++.|++++++.+...+.
T Consensus        73 ~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          73 VVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEEEEccccccHHHHHHHHHHHHh
Confidence            999999999999999999987764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=5.2e-07  Score=82.33  Aligned_cols=159  Identities=14%  Similarity=0.040  Sum_probs=97.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      -|...|.---|||||+..+.+..-.  .....-|.+....-...+-....+.+.|.+|.+++-...-......|..++|.
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            3667888899999999999876544  22222232222223333333346789999999997655555567889999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  259 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~  259 (284)
                      |.++.-..+..+ -+..+.. -...-.|+|.||+|+   ..+++.....++.........++++.+|+++|+||+++-+.
T Consensus        82 ~~deGl~~qtgE-hL~iLdl-lgi~~giivltk~D~---~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~  156 (447)
T COG3276          82 AADEGLMAQTGE-HLLILDL-LGIKNGIIVLTKADR---VDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNE  156 (447)
T ss_pred             eCccCcchhhHH-HHHHHHh-cCCCceEEEEecccc---ccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHH
Confidence            996543322222 1122221 122233899999995   22221111122222222233567899999999999999999


Q ss_pred             HHHHHh
Q 023316          260 IMAKLF  265 (284)
Q Consensus       260 l~~~i~  265 (284)
                      |....-
T Consensus       157 l~~L~~  162 (447)
T COG3276         157 LIDLLE  162 (447)
T ss_pred             HHHhhh
Confidence            888774

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.50  E-value=1.6e-07  Score=82.46  Aligned_cols=148  Identities=14%  Similarity=0.059  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-Cc--ccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCc--ccccc------c
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS--LQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSF--DHVPI------A  168 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~--~~~~~------~  168 (284)
                      -=|+|+|-.|+|||||+++|.+.... .+  ..|..+...  ..... |..  +-+-||-|.-.--  .+...      -
T Consensus       179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h--~a~Lpsg~~--vlltDTvGFisdLP~~LvaAF~ATLee  254 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH--SAHLPSGNF--VLLTDTVGFISDLPIQLVAAFQATLEE  254 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh--hccCCCCcE--EEEeechhhhhhCcHHHHHHHHHHHHH
Confidence            35899999999999999999965544 22  224443333  33332 333  4478999964321  11111      2


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-----EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF  243 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-----Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~  243 (284)
                      ...+|.+|.|.|++.++--+.....+..+.+..-...|     |=|-||+|.....++             .++++  -+
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~E~n~--~v  319 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------EEKNL--DV  319 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------------cccCC--cc
Confidence            46899999999999998655555566666554332222     347899995222111             12233  67


Q ss_pred             EEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          244 FSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       244 ~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      .+||.+|+|.+++.+.+-......
T Consensus       320 ~isaltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  320 GISALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             ccccccCccHHHHHHHHHHHhhhh
Confidence            789999999999988877665543

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2.6e-06  Score=80.11  Aligned_cols=157  Identities=13%  Similarity=0.103  Sum_probs=98.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC--------------------CCCcc----------cccceeeeeEEEEECCeE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE--------------------QERSL----------QMAGLNLINKTLMVQGAR  147 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~--------------------~~~~~----------~t~~~~~~~~~~~~~~~~  147 (284)
                      ...+.++++|+-.+|||||+-+++.+-                    ..-.|          .--|+....++..++...
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            356899999999999999999985321                    00000          011344444455555666


Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHHH---HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNS---IVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~~---~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                      ..+.|.|++|+-.|..-.-.-...+|+.++|.|++-.+   .|+.   .++... +.+.-.-.-.|++.||.|+.. -++
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~-llr~Lgi~qlivaiNKmD~V~-Wsq  332 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHAL-LLRSLGISQLIVAINKMDLVS-WSQ  332 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHH-HHHHcCcceEEEEeecccccC-ccH
Confidence            77889999998888765555567899999999987432   1221   122222 222222223379999999631 122


Q ss_pred             CcccchHHHHHHHH-HHcC-----CcEEEEcCCCCcCHHHH
Q 023316          222 DLQWTIATQARAYA-KAMK-----ATLFFSSATHNINVNKI  256 (284)
Q Consensus       222 ~~~~~~~~~~~~~a-~~~~-----~~~~~~Sa~~~~~v~~l  256 (284)
                      ++-..+......|. +..|     +.|+.||+.+|+|+-..
T Consensus       333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            22233456666666 5555     47999999999997544

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.48  E-value=7.5e-07  Score=78.42  Aligned_cols=54  Identities=17%  Similarity=0.270  Sum_probs=36.5

Q ss_pred             ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          205 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       205 ~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      .-++|.||+||   ++... .. .+...+..+..  +++++.+||++|+|++++++|+...
T Consensus       232 ADIVVLNKiDL---l~~~~-~d-le~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        232 ASLMLLNKVDL---LPYLN-FD-VEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             CcEEEEEhHHc---CcccH-HH-HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34899999997   22111 11 22233333332  5789999999999999999998764

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.45  E-value=3.1e-07  Score=83.54  Aligned_cols=163  Identities=15%  Similarity=0.128  Sum_probs=78.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccccccee---eeeEEEEECCeEEEEEEEeCCCCcCCccccccc-----c
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLN---LINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----C  169 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~---~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~-----~  169 (284)
                      ..++|+|+|++|+|||||||.|.|-... .....+|+.   .....+... ..-.+.+||.+|...-.--...|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            3689999999999999999999664333 222233321   111122221 21236799999975433222223     4


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHH-HHHHHhHCCCCceEEEEeCCCC--CC---CCCCCc-ccchHHHHHHHHHH----c
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGW-YSEARKWNQTAIPILIGTKFDD--FV---RLPPDL-QWTIATQARAYAKA----M  238 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~-~~~l~~~~~~~~~Ilv~nK~Dl--~~---~~~~~~-~~~~~~~~~~~a~~----~  238 (284)
                      ..-|.+|++.+    +.|.+-.-| ..++.+.  ..+..+|-+|+|.  .+   ..+... +....++.++.+.+    .
T Consensus       113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            57788888875    334444433 3344432  3455799999992  00   001010 11123344444332    3


Q ss_pred             CC---cEEEEcCCCCc--CHHHHHHHHHHHHhCCc
Q 023316          239 KA---TLFFSSATHNI--NVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       239 ~~---~~~~~Sa~~~~--~v~~lf~~l~~~i~~~~  268 (284)
                      |+   ++|-+|..+-.  +...+.+.+.+.+...+
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence            43   57778988643  46777777777665443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.44  E-value=1.7e-06  Score=71.11  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=49.5

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCCC--CceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEEcCC
Q 023316          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFSSAT  248 (284)
Q Consensus       173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~~--~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~Sa~  248 (284)
                      +.-|+|.|++..+-.-         ++-.+.  .--++|.||.||..+..-.     .+...+-+++.  +.+++++|++
T Consensus       119 ~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~d-----levm~~da~~~np~~~ii~~n~k  184 (202)
T COG0378         119 HLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGAD-----LEVMARDAKEVNPEAPIIFTNLK  184 (202)
T ss_pred             ceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCcc-----HHHHHHHHHHhCCCCCEEEEeCC
Confidence            4778888988765310         110111  1127999999983222211     23344444444  4799999999


Q ss_pred             CCcCHHHHHHHHHHHH
Q 023316          249 HNINVNKIFKFIMAKL  264 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i  264 (284)
                      +|+|+++++.|+....
T Consensus       185 tg~G~~~~~~~i~~~~  200 (202)
T COG0378         185 TGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CCcCHHHHHHHHHhhc
Confidence            9999999999987654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=1.8e-06  Score=82.10  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=80.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC---------ccccc-------ceeeeeE--EEEE---CCeEEEEEEEeCC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER---------SLQMA-------GLNLINK--TLMV---QGARIAFSIWDVG  156 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~---------~~~t~-------~~~~~~~--~~~~---~~~~~~l~l~Dt~  156 (284)
                      ..-.+|.++|.-+.|||+|+..|.......         .+..+       |..+...  ++..   +++.+.+++.||+
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            345689999999999999999997654321         11111       2222222  2222   5777889999999


Q ss_pred             CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |+..|.......++-+|++++|+|+...-+++.-+ .++...+  .+.+.++|.||+|+
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq--~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ--NRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh--ccCcEEEEEehhHH
Confidence            99999998888999999999999998887775533 2222222  13344799999993

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=3e-06  Score=83.11  Aligned_cols=112  Identities=16%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC--------------CCCcc---cccceeeeeE--EEEECCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE--------------QERSL---QMAGLNLINK--TLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~--------------~~~~~---~t~~~~~~~~--~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      ..+|.++|+-.+|||||..+++-..              +.+..   ..-|.++.+.  ++...+ ...+.+.||+|+.+
T Consensus        10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHVD   88 (697)
T COG0480          10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHVD   88 (697)
T ss_pred             ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCccc
Confidence            5689999999999999999986321              11000   0113333333  334444 57788999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |.......++-+|++++|+|+...-..+.-.-|.+..+.   ..|+|++.||+|.
T Consensus        89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR  140 (697)
T COG0480          89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDR  140 (697)
T ss_pred             cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccc
Confidence            999999999999999999999877665555566655432   4566999999995

>smart00053 DYNc Dynamin, GTPase

Probab=98.39  E-value=3e-06  Score=73.05  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ...|+++|+.|+||||+++.+.+..
T Consensus        26 ~p~i~vvG~~~~GKSt~l~~i~g~~   50 (240)
T smart00053       26 LPQIAVVGGQSAGKSSVLENFVGRD   50 (240)
T ss_pred             CCeEEEEcCCCccHHHHHHHHhCCC
Confidence            3479999999999999999999875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01859 MJ1464 MJ1464

Probab=98.38  E-value=9.3e-07  Score=71.09  Aligned_cols=56  Identities=16%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~  158 (284)
                      ..+++++|.+|+|||||++++.+.......++.|.+.....+..++   .+.+|||+|.
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            5789999999999999999999766443334555443322233332   4789999994

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.34  E-value=1.1e-06  Score=71.90  Aligned_cols=55  Identities=11%  Similarity=0.146  Sum_probs=39.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~  158 (284)
                      ..++++++|.+|||||||+|++.+..+.  ...+.++  .....+.++   ..+.+|||+|.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence            3579999999999999999999998764  3333333  333334443   23679999995

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.32  E-value=1.4e-06  Score=71.53  Aligned_cols=54  Identities=13%  Similarity=0.205  Sum_probs=38.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~  158 (284)
                      .++|+++|.+|||||||+|++.+.+..  +..+.++...  ..+.++.   .+.++||+|.
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcCC
Confidence            589999999999999999999987764  4445333332  2333432   3679999984

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.30  E-value=1.9e-06  Score=69.48  Aligned_cols=54  Identities=13%  Similarity=0.189  Sum_probs=36.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~  158 (284)
                      .++|+++|.+|||||||+|++.+.+..  ...+.++..  ...+..++ .  +.+.||+|.
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~-~--~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK-R--IYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC-C--EEEEECcCC
Confidence            578999999999999999999987654  444432222  22223322 2  568999984

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=9.6e-06  Score=68.97  Aligned_cols=161  Identities=18%  Similarity=0.221  Sum_probs=99.0

Q ss_pred             EEEEEcCCCC--ChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC--CeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316          102 KISLLGDCQI--GKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus       102 KI~llG~~~v--GKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      -++|.|-.||  ||.+|+.++....|. ...+.-...++.+++.-.  ...+.+.+-  .--+.+.-..........+++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcis--hicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCIS--HICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEee--cccchhccCCcccccceeeEE
Confidence            4688999999  999999999998888 333444555665654211  112222221  111111111111123456899


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCC---------------C---------------------
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL---------------P---------------------  220 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~---------------~---------------------  220 (284)
                      ++||.+...++..++.|+..-.-+. -.+.+.+|||.|....-               |                     
T Consensus        84 mvfdlse~s~l~alqdwl~htdins-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl  162 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDINS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL  162 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccccc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence            9999999999999999987532211 12335789999942210               0                     


Q ss_pred             ---CCcccchHHHHHHHHHHcCCcEEEEcCCC------------CcCHHHHHHHHHHHHh
Q 023316          221 ---PDLQWTIATQARAYAKAMKATLFFSSATH------------NINVNKIFKFIMAKLF  265 (284)
Q Consensus       221 ---~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~------------~~~v~~lf~~l~~~i~  265 (284)
                         ++-.-.+...+.+|+.++|+.|++.+|.+            -+||+.+|..+.....
T Consensus       163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence               00000124456789999999999988843            3478999988876553

>TIGR00092 GTP-binding protein YchF

Probab=98.28  E-value=6.2e-06  Score=75.05  Aligned_cols=82  Identities=11%  Similarity=0.040  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC-C-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCC--
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS--  161 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~--  161 (284)
                      +|+.++|.||+|||||.+.+++... . ..||.++.+.....+.+.+..               ..+++.|.+|...-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999999887 5 667744444444555655432               35789999997652  


Q ss_pred             --ccccccc---ccCCcEEEEEEeCC
Q 023316          162 --FDHVPIA---CKDAVAILFMFDLT  182 (284)
Q Consensus       162 --~~~~~~~---~~~ad~iilv~d~~  182 (284)
                        ..+...|   ++.+|++++|.+..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence              2344444   57999999999874

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK13796 GTPase YqeH; Provisional

Probab=98.26  E-value=6.9e-06  Score=75.39  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             cCCc-EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcCC---cEEE
Q 023316          170 KDAV-AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMKA---TLFF  244 (284)
Q Consensus       170 ~~ad-~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~~---~~~~  244 (284)
                      ...+ .+++|+|+.+..     ..|...+.+.....++++|+||+||   ++... .....+..+.+++..|+   .++.
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DL---l~~~~~~~~i~~~l~~~~k~~g~~~~~v~~  138 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADL---LPKSVKKNKVKNWLRQEAKELGLRPVDVVL  138 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhh---CCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence            4444 889999987743     2466666665555667899999997   33221 11112333445666676   5789


Q ss_pred             EcCCCCcCHHHHHHHHHHHH
Q 023316          245 SSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +||+++.|++++++.+....
T Consensus       139 vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             EECCCCCCHHHHHHHHHHhc
Confidence            99999999999999997654

>cd01858 NGP_1 NGP-1

Probab=98.23  E-value=5.7e-06  Score=66.64  Aligned_cols=88  Identities=11%  Similarity=0.137  Sum_probs=55.7

Q ss_pred             cccCCcEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023316          168 ACKDAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  245 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s--~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  245 (284)
                      .+.++|++++|.|+.++..  ...+.+++   .......|+|+|.||+||   ++.+   ........+.+.+....+.+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~~~~~p~ilVlNKiDl---~~~~---~~~~~~~~~~~~~~~~~~~i   75 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKEKPHKHLIFVLNKCDL---VPTW---VTARWVKILSKEYPTIAFHA   75 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHH---HhccCCCCEEEEEEchhc---CCHH---HHHHHHHHHhcCCcEEEEEe
Confidence            4689999999999988643  22333333   222334566999999997   2221   11222333333333334679


Q ss_pred             cCCCCcCHHHHHHHHHHHH
Q 023316          246 SATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i  264 (284)
                      ||+++.|++++.+.+...+
T Consensus        76 Sa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          76 SINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eccccccHHHHHHHHHHHH
Confidence            9999999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.20  E-value=4.2e-06  Score=74.32  Aligned_cols=152  Identities=11%  Similarity=0.100  Sum_probs=81.1

Q ss_pred             ChhhHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc--cc----ccccCCCCCCCCCc
Q 023316            1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR--YQ----KLTRRSSSESSPAP   74 (284)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~--~~----~~~~~~~~~~~~~~   74 (284)
                      |+|+++|+.+++.+++..+..+|.|..+..+...+.+.+.  ..+.+++-++..-...  ..    .......+ .-+-.
T Consensus        11 m~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~-vi~vS   87 (287)
T PRK09563         11 MAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEEQGIK-ALAIN   87 (287)
T ss_pred             HHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe-EEEEE
Confidence            8999999999999999999999999888888766655443  1222333332210000  00    00000000 00000


Q ss_pred             cccccccccccc----c---c-CCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEEC
Q 023316           75 DTMEAGLVELSR----T---F-SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQ  144 (284)
Q Consensus        75 ~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~  144 (284)
                      .....+......    .   . ............++|+++|.+|||||||+|++.+.+..  +..+.++..  ...+.++
T Consensus        88 a~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~  165 (287)
T PRK09563         88 AKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLG  165 (287)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeC
Confidence            000000000000    0   0 00000111234589999999999999999999998764  444433333  2334444


Q ss_pred             CeEEEEEEEeCCCCcC
Q 023316          145 GARIAFSIWDVGGDSR  160 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e~  160 (284)
                      +   .+.++||+|...
T Consensus       166 ~---~~~l~DtPGi~~  178 (287)
T PRK09563        166 K---GLELLDTPGILW  178 (287)
T ss_pred             C---cEEEEECCCcCC
Confidence            3   366999999853

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.20  E-value=3.6e-06  Score=74.36  Aligned_cols=151  Identities=11%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             ChhhHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc--cc----ccccCCCCCCCCCc
Q 023316            1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR--YQ----KLTRRSSSESSPAP   74 (284)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~--~~----~~~~~~~~~~~~~~   74 (284)
                      |+|+++|+.+++.+++..+..+|.|..+..+...+.+.+.  ..+++++-++..-...  ..    .......+ .-+-.
T Consensus         8 m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~-vi~iS   84 (276)
T TIGR03596         8 MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEEKGIK-ALAIN   84 (276)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHHHHcCCe-EEEEE
Confidence            8999999999999999999999999888877766555442  1233333332221000  00    00000000 00000


Q ss_pred             cccccccccc----ccccCCC----CCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEEC
Q 023316           75 DTMEAGLVEL----SRTFSSG----YDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQ  144 (284)
Q Consensus        75 ~~~~~~~~~~----~~~~~~~----~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~  144 (284)
                      .....+....    .......    .........++++++|.+|||||||+|++.+....  ...+.+  +.....+.++
T Consensus        85 a~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~--T~~~~~~~~~  162 (276)
T TIGR03596        85 AKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGV--TKGQQWIKLS  162 (276)
T ss_pred             CCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe--ecceEEEEeC
Confidence            0000000000    0000000    00011123689999999999999999999987754  344432  2223344443


Q ss_pred             CeEEEEEEEeCCCCc
Q 023316          145 GARIAFSIWDVGGDS  159 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e  159 (284)
                      .   .+.++||+|.-
T Consensus       163 ~---~~~l~DtPG~~  174 (276)
T TIGR03596       163 D---GLELLDTPGIL  174 (276)
T ss_pred             C---CEEEEECCCcc
Confidence            3   35799999983

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.19  E-value=2.9e-05  Score=69.61  Aligned_cols=139  Identities=17%  Similarity=0.199  Sum_probs=86.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-----------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---c
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H  164 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---~  164 (284)
                      ..+.|+++|..|.|||||+|.|++......           .+++.+......+.-+|..+.+.+.||+|.-.+-.   .
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            368999999999999999999998744321           12333444444445578889999999999654211   1


Q ss_pred             c-----------cccc--------------cCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          165 V-----------PIAC--------------KDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       165 ~-----------~~~~--------------~~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      |           ..|+              ...|++|+....+... +..+. ..+.++.+   ..=.|-|..|.|.   
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~---~vNlIPVI~KaD~---  174 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK---RVNLIPVIAKADT---  174 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc---ccCeeeeeecccc---
Confidence            1           1111              2467888888765432 22222 33444432   2223667889996   


Q ss_pred             CCCCcccchHHHHHHHHHHcCCcEEE
Q 023316          219 LPPDLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                      +..+......+..++-...+++++|.
T Consensus       175 lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         175 LTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            44443333466666777778888874

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.15  E-value=1.4e-05  Score=64.30  Aligned_cols=84  Identities=17%  Similarity=0.044  Sum_probs=53.5

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023316          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  252 (284)
Q Consensus       173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~  252 (284)
                      |++|+|+|+.++.+..+  .|+..........|+|+|.||+||   .+.+   ...+....+.+..+..++.+||+++.|
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl---~~~~---~~~~~~~~~~~~~~~~ii~vSa~~~~g   72 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADL---VPKE---VLRKWLAYLRHSYPTIPFKISATNGQG   72 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhc---CCHH---HHHHHHHHHHhhCCceEEEEeccCCcC
Confidence            68999999988765442  233311111234566899999996   2211   111112233333456788999999999


Q ss_pred             HHHHHHHHHHHH
Q 023316          253 VNKIFKFIMAKL  264 (284)
Q Consensus       253 v~~lf~~l~~~i  264 (284)
                      ++++++.+....
T Consensus        73 i~~L~~~i~~~~   84 (155)
T cd01849          73 IEKKESAFTKQT   84 (155)
T ss_pred             hhhHHHHHHHHh
Confidence            999999887653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=7.3e-05  Score=67.48  Aligned_cols=142  Identities=13%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCc--------cc--ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERS--------LQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-------  162 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~--------~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-------  162 (284)
                      .+.++++|+.|.|||||+|.|+...+...        .+  |..+......+.-+|..+.+.+.||+|.-+.-       
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            58999999999999999999987755422        11  33344443344447889999999999964311       


Q ss_pred             ------------------cccccccc--CCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          163 ------------------DHVPIACK--DAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       163 ------------------~~~~~~~~--~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                                        .+.+.-+.  ..+++|+....+... +..+. ..+..+.   ...-.|-|..|.|.   +..
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~---~~vNiIPVI~KaD~---lT~  173 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS---KKVNLIPVIAKADT---LTK  173 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh---ccccccceeecccc---CCH
Confidence                              11111222  567888888765431 12221 2333332   22233567889995   443


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          222 DLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      +......+.+.+-....++++|....-
T Consensus       174 ~El~~~K~~I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  174 DELNQFKKRIRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCcceecCCCC
Confidence            333333566667777788887764443

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.13  E-value=3.3e-06  Score=72.85  Aligned_cols=156  Identities=13%  Similarity=0.129  Sum_probs=89.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-C-cccccceeeeeEEEEECCeEEEEEEEeCCCC----------cCCcccc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-R-SLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHV  165 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------e~~~~~~  165 (284)
                      .....++++|..|||||||++.++..+.. . ..++.|..-....+.++   ..+.+.|.+|-          +.+..+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence            34688999999999999999999887765 2 22233432222222222   34567899982          2234455


Q ss_pred             cccccCCc---EEEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHH---HHHH--
Q 023316          166 PIACKDAV---AILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQ---ARAY--  234 (284)
Q Consensus       166 ~~~~~~ad---~iilv~d~~~~--~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~--  234 (284)
                      ..|+.+-+   -+.+..|+..+  .+-.....|+.+      .++| .+|.||||................   ...+  
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~  284 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR  284 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence            55654333   33444555433  122333467654      5566 699999996433331111111110   1111  


Q ss_pred             -HHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316          235 -AKAMKATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       235 -a~~~~~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                       ......+++.+|+.++.|+++++..+.+
T Consensus       285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cceeccCCceeeecccccCceeeeeehhh
Confidence             1122356778999999999998877654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.10  E-value=3.4e-05  Score=69.48  Aligned_cols=157  Identities=15%  Similarity=0.103  Sum_probs=93.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc--------------ccceeeeeEEEEECC----------------
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--------------MAGLNLINKTLMVQG----------------  145 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~--------------t~~~~~~~~~~~~~~----------------  145 (284)
                      ....+.|.+.|.-..|||||+-.|+.++.. .+-.              ....++.-..+-+++                
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            344788999999999999999999766544 1111              011112112222221                


Q ss_pred             -----eEEEEEEEeCCCCcCCcc--cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          146 -----ARIAFSIWDVGGDSRSFD--HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       146 -----~~~~l~l~Dt~G~e~~~~--~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                           ..-.+.+.||.|+|.|-.  +...+=...|-.+++.-+++.-+--. ++-+--+.  .-.-|.|++.||+|+   
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--a~~lPviVvvTK~D~---  267 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--AMELPVIVVVTKIDM---  267 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--hhcCCEEEEEEeccc---
Confidence                 113467999999999743  44445568899999998877654211 11111110  123455899999997   


Q ss_pred             CCCCcccchHHHHHHHHHH----------------------cC---CcEEEEcCCCCcCHHHHHHH
Q 023316          219 LPPDLQWTIATQARAYAKA----------------------MK---ATLFFSSATHNINVNKIFKF  259 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~----------------------~~---~~~~~~Sa~~~~~v~~lf~~  259 (284)
                      .++++...+.++..++.+.                      .+   +|+|.+|+.+|+|++-+.+.
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~  333 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF  333 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence            4555444444444443331                      11   58899999999997654333

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.10  E-value=7.3e-06  Score=70.54  Aligned_cols=149  Identities=13%  Similarity=0.139  Sum_probs=79.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC------CCC----C-ccccc----------------ceeeeeEEEEECC-------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN------EQE----R-SLQMA----------------GLNLINKTLMVQG-------  145 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~------~~~----~-~~~t~----------------~~~~~~~~~~~~~-------  145 (284)
                      .+.|-+-|.||+|||||+..|...      +..    + +.+-+                ..+.+.+.+--.|       
T Consensus        29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~  108 (266)
T PF03308_consen   29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR  108 (266)
T ss_dssp             SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred             ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence            468899999999999999998521      100    0 11111                1223333333222       


Q ss_pred             -----------eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          146 -----------ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       146 -----------~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                                 ..+.+.|.+|.|--+..-   ....-+|.+++|.-....+..+.++.=   +.+.    .-|+|.||.|
T Consensus       109 ~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaG---imEi----aDi~vVNKaD  178 (266)
T PF03308_consen  109 ATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAG---IMEI----ADIFVVNKAD  178 (266)
T ss_dssp             HHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TT---HHHH-----SEEEEE--S
T ss_pred             hHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhh---hhhh----ccEEEEeCCC
Confidence                       124466777766332111   124578999999877665554443311   1111    2299999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHH-------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          215 DFVRLPPDLQWTIATQARAYAKA-------MKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +    +...  ....+.+.....       +..+++.|||.++.|++++++.+.+..
T Consensus       179 ~----~gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  179 R----PGAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             H----HHHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             h----HHHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3    2211  112222222221       124788999999999999999887643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.07  E-value=1e-05  Score=71.66  Aligned_cols=83  Identities=14%  Similarity=0.221  Sum_probs=61.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC---------------eEEEEEEEeCCCCcC--
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG---------------ARIAFSIWDVGGDSR--  160 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~~l~l~Dt~G~e~--  160 (284)
                      ..+|+-++|.||||||||.|.+.+.... ..+|-.+++-....+.+..               ....++++|+||..+  
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            4789999999999999999999998877 7788444333333444322               235689999999765  


Q ss_pred             --Ccccccccc---cCCcEEEEEEeC
Q 023316          161 --SFDHVPIAC---KDAVAILFMFDL  181 (284)
Q Consensus       161 --~~~~~~~~~---~~ad~iilv~d~  181 (284)
                        -..+...|+   +.+|+++.|.++
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~  124 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRA  124 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEe
Confidence              345666664   688999988866

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=3.2e-05  Score=69.32  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCC----cccccceeeeeEEEE------ECCeE------------------------
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLM------VQGAR------------------------  147 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~----~~~t~~~~~~~~~~~------~~~~~------------------------  147 (284)
                      =|+++|.-+.||||+++.++.++|..    ..||+.  +....+.      ++|..                        
T Consensus        60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            48999999999999999999998872    223331  1111110      11110                        


Q ss_pred             ---------EEEEEEeCCCCcC-----------CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE
Q 023316          148 ---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI  207 (284)
Q Consensus       148 ---------~~l~l~Dt~G~e~-----------~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I  207 (284)
                               -.+.+.||+|.-.           |.....=|...+|.|+++||....+--.+....+..++.+  ...+=
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiR  215 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIR  215 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeE
Confidence                     1378999999533           3334445778999999999987665445555666666543  22334


Q ss_pred             EEEeCCCC
Q 023316          208 LIGTKFDD  215 (284)
Q Consensus       208 lv~nK~Dl  215 (284)
                      ||.||.|.
T Consensus       216 VVLNKADq  223 (532)
T KOG1954|consen  216 VVLNKADQ  223 (532)
T ss_pred             EEeccccc
Confidence            89999993

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=2.4e-05  Score=68.11  Aligned_cols=164  Identities=10%  Similarity=0.102  Sum_probs=98.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC---C-------CC--Cccc---ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN---E-------QE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~---~-------~~--~~~~---t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ....+|..+|.-.-|||||...+..-   .       |.  ...|   .-|+.+....+.+.-.+-.+...|++|+.+|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            34789999999999999998887421   1       11  1111   23555555555554444456688999999875


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCC-CCcccchHHHHHHHHHHcCC
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLP-PDLQWTIATQARAYAKAMKA  240 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~a~~~~~  240 (284)
                      .-.-.-..+.|+.|+|.+.++.-.-+.-...+ ..++  -..|- ++..||+|+   .+ ++....++.+.+++..++++
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larq--vGvp~ivvflnK~Dm---vdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQ--VGVPYIVVFLNKVDM---VDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhh--cCCcEEEEEEecccc---cCcHHHHHHHHHHHHHHHHHcCC
Confidence            43333345789999999988743222211111 1111  12333 588999997   33 23334457888999998875


Q ss_pred             -----cEEEEcCCCC-c-------CHHHHHHHHHHHHhCC
Q 023316          241 -----TLFFSSATHN-I-------NVNKIFKFIMAKLFNL  267 (284)
Q Consensus       241 -----~~~~~Sa~~~-~-------~v~~lf~~l~~~i~~~  267 (284)
                           |++.-||..- +       .|.++++.+-..+-..
T Consensus       164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P  203 (394)
T COG0050         164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP  203 (394)
T ss_pred             CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence                 4666666532 1       2455555555555433

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.02  E-value=1.1e-05  Score=72.80  Aligned_cols=57  Identities=12%  Similarity=0.261  Sum_probs=42.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      ...++.++|-||||||||+|+|.+....  +..|  |.+-....+.++..   +.++||+|.--
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGii~  189 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGIIP  189 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCcCC
Confidence            3578999999999999999999998865  4445  44444445555433   67999999754

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.01  E-value=2.7e-05  Score=66.70  Aligned_cols=85  Identities=16%  Similarity=0.314  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----c---ccccccccCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----F---DHVPIACKDA  172 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~---~~~~~~~~~a  172 (284)
                      -||-++|.|++|||||+..+.+..-. ..+..+........+.+++.+  +++.|.+|.-+-    .   ...-...+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence            48999999999999999999887655 555544444444555666655  679999996542    1   1222345789


Q ss_pred             cEEEEEEeCCChhhH
Q 023316          173 VAILFMFDLTSRCTL  187 (284)
Q Consensus       173 d~iilv~d~~~~~s~  187 (284)
                      +.+++|.|+..+-+-
T Consensus       138 nli~~vld~~kp~~h  152 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSH  152 (358)
T ss_pred             cEEEEEeeccCcccH
Confidence            999999999876543

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=97.98  E-value=4.7e-05  Score=64.54  Aligned_cols=156  Identities=10%  Similarity=0.162  Sum_probs=89.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCC---------ccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQER---------SLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-------  162 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~---------~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-------  162 (284)
                      .++|+|+|.+|.|||||+|.+.......         .++ |+........+.-+|.++++.+.||+|.-+.-       
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            6899999999999999999997654331         222 44444444555557888999999999954311       


Q ss_pred             -------cccccc------------cc--CCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          163 -------DHVPIA------------CK--DAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       163 -------~~~~~~------------~~--~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                             .....|            +.  ..+++++....+..+ +.-+. .+++.+.+-   .-+|-|..|.|-   +.
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~v---vNvvPVIakaDt---lT  198 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTEV---VNVVPVIAKADT---LT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhhh---heeeeeEeeccc---cc
Confidence                   111122            22  356777777666432 22222 445555332   122557789993   33


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      -+.+..-.+.+++-...+++.+|.--+.+-+.=+..++.-++
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR  240 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR  240 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence            332333355566666778888776444433322333443333

>cd01855 YqeH YqeH

Probab=97.98  E-value=1.2e-05  Score=66.80  Aligned_cols=53  Identities=11%  Similarity=0.230  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC---------C-CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ---------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~---------~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~  158 (284)
                      ..++++|.+|||||||+|.+.+...         . +..+.++  .....+.++.   .+.++||+|.
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcCC
Confidence            5799999999999999999997543         1 2333222  2233444432   3579999994

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.98  E-value=2.6e-05  Score=61.65  Aligned_cols=76  Identities=16%  Similarity=0.131  Sum_probs=51.8

Q ss_pred             ccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316          167 IACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       167 ~~~~~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                      ..+.++|++++|+|+.++.+..  .+..|+...   ..+.++|+|.||+||   .+++    ...+..++.+..+..+++
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL---~~~~----~~~~~~~~~~~~~~~ii~   76 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADL---LTEE----QRKAWAEYFKKEGIVVVF   76 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhc---CCHH----HHHHHHHHHHhcCCeEEE
Confidence            4578999999999998876544  444555433   234566899999996   2211    123344555666788999


Q ss_pred             EcCCCCcC
Q 023316          245 SSATHNIN  252 (284)
Q Consensus       245 ~Sa~~~~~  252 (284)
                      +||.++.+
T Consensus        77 iSa~~~~~   84 (141)
T cd01857          77 FSALKENA   84 (141)
T ss_pred             EEecCCCc
Confidence            99998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.97  E-value=0.00014  Score=63.67  Aligned_cols=103  Identities=14%  Similarity=0.035  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cc
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WT  226 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~  226 (284)
                      +.+.|.+|.|--+...   ....-+|.++++-=..-.+..+-++   .-+.+.    --|+|.||.|+    ..... ..
T Consensus       144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK---~GimEi----aDi~vINKaD~----~~A~~a~r  209 (323)
T COG1703         144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIK---AGIMEI----ADIIVINKADR----KGAEKAAR  209 (323)
T ss_pred             CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHH---hhhhhh----hheeeEeccCh----hhHHHHHH
Confidence            4566777776543221   1234678888876544444443333   222211    12899999994    22110 00


Q ss_pred             hHHHHHHHH----HHc--CCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          227 IATQARAYA----KAM--KATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       227 ~~~~~~~~a----~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      ....+..+.    ...  .-+.+.|||.+|+|++++++.+....
T Consensus       210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence            011111111    112  24789999999999999999988654

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.96  E-value=2.7e-05  Score=81.47  Aligned_cols=108  Identities=17%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCC-Cc----cc--ccceeeeeEEEEECCeEEEEEEEeCCCCc--------CCcccccc
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQE-RS----LQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPI  167 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~-~~----~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e--------~~~~~~~~  167 (284)
                      .+|||++|+|||||+++- |-+|. ..    ..  +.+.+. .....+.+.-   .++||+|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence            679999999999999987 44554 21    11  111111 0112223333   388999932        12233444


Q ss_pred             cc---------cCCcEEEEEEeCCChh-----hH----HHHHHHHHHHHhHCCCCceE-EEEeCCCC
Q 023316          168 AC---------KDAVAILFMFDLTSRC-----TL----NSIVGWYSEARKWNQTAIPI-LIGTKFDD  215 (284)
Q Consensus       168 ~~---------~~ad~iilv~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl  215 (284)
                      |+         +..+++|+++|+.+--     ..    ..++..++++.+...-..|| |+.||+|+
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl  255 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL  255 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence            43         4689999999986432     11    23456677777765656664 99999997

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=0.00014  Score=66.72  Aligned_cols=112  Identities=13%  Similarity=0.194  Sum_probs=73.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc--C--------------CCC-Ccc----cccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG--N--------------EQE-RSL----QMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~--~--------------~~~-~~~----~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~  158 (284)
                      +-..++|-.|-+|||||-.+++-  +              .+. ++.    ..-|+.+.+..+..+-....+.|.||+|+
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            44578999999999999999841  1              010 000    01144444444444444466789999999


Q ss_pred             cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCC
Q 023316          159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDD  215 (284)
Q Consensus       159 e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl  215 (284)
                      ++|..-+..-+.-+|.+++|.|+...-.-+. .++.+-.+-   ..+| +-..||.|.
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR  145 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDR  145 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeecccc
Confidence            9999888778889999999999976543222 233333322   3455 578999994

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.91  E-value=4.2e-05  Score=65.48  Aligned_cols=83  Identities=16%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC--CCC--Ccc-c-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---c---ccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN--EQE--RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H---VPI  167 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~--~~~--~~~-~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---~---~~~  167 (284)
                      ..-|.|+|.+++|||+|+|++++.  .|.  ... + |.|+-.....+.. +....+.+.||.|......   .   .-.
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence            345779999999999999999998  666  222 2 4454433322221 3346688999999875322   1   112


Q ss_pred             cccC--CcEEEEEEeCCC
Q 023316          168 ACKD--AVAILFMFDLTS  183 (284)
Q Consensus       168 ~~~~--ad~iilv~d~~~  183 (284)
                      .+..  ++.+|+..+.+.
T Consensus        86 ~l~~llss~~i~n~~~~~  103 (224)
T cd01851          86 ALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHhCEEEEeccCcc
Confidence            2233  677777666543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.90  E-value=3.3e-05  Score=62.08  Aligned_cols=54  Identities=13%  Similarity=0.207  Sum_probs=37.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~  158 (284)
                      ..+++++|.+|+|||||+|.+.+....  +..+.++.+..  .+.++   ..+.+.||+|.
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG~  155 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCCC
Confidence            578999999999999999999987643  33343333322  23333   23679999984

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=0.0002  Score=64.43  Aligned_cols=157  Identities=13%  Similarity=0.160  Sum_probs=91.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCC------------------------cccccceeeeeEEEEECC-------
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER------------------------SLQMAGLNLINKTLMVQG-------  145 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~------------------------~~~t~~~~~~~~~~~~~~-------  145 (284)
                      ...+++++++|...+|||||+--+..++..+                        ....+|.|-..+.+.+..       
T Consensus       164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi  243 (591)
T KOG1143|consen  164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI  243 (591)
T ss_pred             cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence            3457999999999999999988876544321                        111335554444444432       


Q ss_pred             ---eEEEEEEEeCCCCcCCccccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          146 ---ARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       146 ---~~~~l~l~Dt~G~e~~~~~~~~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                         ....+.+.|.+|+.+|....-+-+.  ..|..++|.+.+...++.. ++-+--+..  -+.|..++.+|+||.....
T Consensus       244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA--LNIPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH--hCCCeEEEEEeeccccchh
Confidence               2244779999999998765444332  4566777777766554322 112222221  1445579999999742200


Q ss_pred             CC-------------------cccchHHHHHHHHHHc----CCcEEEEcCCCCcCHHHH
Q 023316          221 PD-------------------LQWTIATQARAYAKAM----KATLFFSSATHNINVNKI  256 (284)
Q Consensus       221 ~~-------------------~~~~~~~~~~~~a~~~----~~~~~~~Sa~~~~~v~~l  256 (284)
                      -+                   .....++++-..+++.    -.|+|.+|..+|++++-+
T Consensus       321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            00                   0001133333333332    358888999999997654

>cd01856 YlqF YlqF

Probab=97.76  E-value=4.9e-05  Score=62.12  Aligned_cols=89  Identities=15%  Similarity=0.030  Sum_probs=58.1

Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                      ....+.++|.+++|+|+.++.+..+ ..+.+.+    ...++|+|.||+||   .++   .. .....++.+..+..++.
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~----~~k~~ilVlNK~Dl---~~~---~~-~~~~~~~~~~~~~~vi~   80 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL----GNKPRIIVLNKADL---ADP---KK-TKKWLKYFESKGEKVLF   80 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh----cCCCEEEEEehhhc---CCh---HH-HHHHHHHHHhcCCeEEE
Confidence            3456789999999999987654221 1122222    24567999999996   221   11 11122333334557889


Q ss_pred             EcCCCCcCHHHHHHHHHHHHh
Q 023316          245 SSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +||+++.|++++.+.+...+.
T Consensus        81 iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          81 VNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EECCCcccHHHHHHHHHHHHH
Confidence            999999999999999888763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00036  Score=67.08  Aligned_cols=113  Identities=12%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--Ccccccc----------ee------------------------------
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG----------LN------------------------------  135 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~----------~~------------------------------  135 (284)
                      ....||++.|+.+.||||++|.++.++.-  ...+++.          .+                              
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            34689999999999999999999876644  2222221          00                              


Q ss_pred             ---eeeEEEEECCeE-----EEEEEEeCCCCcC---CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC
Q 023316          136 ---LINKTLMVQGAR-----IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA  204 (284)
Q Consensus       136 ---~~~~~~~~~~~~-----~~l~l~Dt~G~e~---~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~  204 (284)
                         ...+ +.++...     -.+.+.|.+|-.-   ..+-...++.++|++|+|.+..+..+..+-. ++....+   .+
T Consensus       187 ~~~sLlr-V~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~---~K  261 (749)
T KOG0448|consen  187 GAGSLLR-VFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE---EK  261 (749)
T ss_pred             CcceEEE-EEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc---cC
Confidence               0000 1111110     1255677777654   3344556788999999999887776655533 3333322   23


Q ss_pred             ceE-EEEeCCCC
Q 023316          205 IPI-LIGTKFDD  215 (284)
Q Consensus       205 ~~I-lv~nK~Dl  215 (284)
                      |-| ++-||+|.
T Consensus       262 pniFIlnnkwDa  273 (749)
T KOG0448|consen  262 PNIFILNNKWDA  273 (749)
T ss_pred             CcEEEEechhhh
Confidence            445 88899995

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.74  E-value=9.5e-05  Score=65.12  Aligned_cols=94  Identities=15%  Similarity=0.143  Sum_probs=55.8

Q ss_pred             EEEEEEeCCCCcCCccccc------------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVP------------IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~------------~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      +.+.+.||+|........-            ..-..+|..++|.|.+..  .+.+. +...+.+..  .+--+|.||.|.
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~--~~~g~IlTKlDe  229 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV--GLTGIILTKLDG  229 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC--CCCEEEEEccCC
Confidence            5678999999865322110            111248899999999743  22322 222222211  223599999993


Q ss_pred             CCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                            ...   .-.+...+...+.|+.+++  +|++++++-
T Consensus       230 ------~~~---~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       230 ------TAK---GGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             ------CCC---ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence                  111   2334555666789988887  788887763

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.72  E-value=4.7e-05  Score=69.33  Aligned_cols=57  Identities=12%  Similarity=0.142  Sum_probs=36.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCC--Ccccc---cce--eeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~--~~~~t---~~~--~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ++++|.+|||||||+|+|++....  ...+.   -|.  +.....+.+++..   .++||+|...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            789999999999999999977533  22221   111  1112233443222   389999998864

>PRK12289 GTPase RsgA; Reviewed

Probab=97.70  E-value=6.8e-05  Score=68.33  Aligned_cols=56  Identities=13%  Similarity=0.178  Sum_probs=35.0

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCC--Ccccc---cc--eeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AG--LNLINKTLMVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~--~~~~t---~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      ++|+|.+|||||||+|.|++....  ...+.   -|  .+.....+.+++..   .|.||+|...+
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            799999999999999999976533  22221   01  11122333443222   48899998654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.68  E-value=4.1e-05  Score=61.81  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--Cccc-c--cc--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      -++++|..|||||||+|.+.+....  ...+ .  .|  .......+.+++..   .+.||+|...+.
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            5889999999999999999987422  1111 1  11  11123344453322   378999987754

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.68  E-value=0.0002  Score=63.30  Aligned_cols=90  Identities=17%  Similarity=0.084  Sum_probs=58.4

Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                      ....+..+|++|+|.|+.++.+..+  .++.++.   ...+.|+|.||+||   .+..   . .+...++.+..+.+++.
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL---~~~~---~-~~~~~~~~~~~~~~vi~   82 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADL---ADPA---V-TKQWLKYFEEKGIKALA   82 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEcccc---CCHH---H-HHHHHHHHHHcCCeEEE
Confidence            3446789999999999977654322  1222222   24566899999996   2211   1 11112222334667899


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhC
Q 023316          245 SSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      +||+++.|++++.+.+...+.+
T Consensus        83 iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        83 INAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             EECCCcccHHHHHHHHHHHHHH
Confidence            9999999999999888777643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00016  Score=70.08  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=80.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC------------CC---CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE------------QE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~------------~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~  164 (284)
                      .-+|+++-.-.-|||||...++...            |.   .+.++-|++.....+..-.+.+.+.+.|++|+.+|.+.
T Consensus         9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se   88 (887)
T KOG0467|consen    9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE   88 (887)
T ss_pred             eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence            4578999999999999999996532            22   22235566666556655556688999999999999999


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHH---HH-HHHHHHHhHCCCCceEEEEeCCC
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNS---IV-GWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~---~~-~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      .....+-+|++++..|+...-.-+.   ++ -|.       ....||+|.||+|
T Consensus        89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~-------~~~~~~lvinkid  135 (887)
T KOG0467|consen   89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI-------EGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH-------ccCceEEEEehhh
Confidence            9999999999999999875433222   22 243       3457799999999

>PRK01889 GTPase RsgA; Reviewed

Probab=97.64  E-value=0.00033  Score=64.11  Aligned_cols=84  Identities=15%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      ..++|.+++|.++...-....+..++..+...  +.+|+||.||+||.   ++. . ...+....+  ..+.+++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~---~~~-~-~~~~~~~~~--~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLC---EDA-E-EKIAEVEAL--APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcC---CCH-H-HHHHHHHHh--CCCCcEEEEECC
Confidence            57899999999997555555666776665543  45779999999972   221 1 111222222  457889999999


Q ss_pred             CCcCHHHHHHHHH
Q 023316          249 HNINVNKIFKFIM  261 (284)
Q Consensus       249 ~~~~v~~lf~~l~  261 (284)
                      ++.|++++..++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999888764

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.64  E-value=0.0001  Score=64.01  Aligned_cols=57  Identities=16%  Similarity=0.156  Sum_probs=36.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--Ccccc-c--c--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQM-A--G--LNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t-~--~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      .++++|.+|||||||+|++.+....  ...+. .  |  .+.....+..++.    .++||+|...+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence            6889999999999999999976432  22221 1  1  1112223333332    489999987653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.57  E-value=0.0017  Score=53.18  Aligned_cols=86  Identities=16%  Similarity=0.054  Sum_probs=58.9

Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW  225 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~  225 (284)
                      ..+.+.+.||++...  ......+..+|.++++...+ ..+...+..+++.+++..  .+..+|.||+|.    .    .
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~~--~~~~vV~N~~~~----~----~  157 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHFG--IPVGVVINKYDL----N----D  157 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHcC--CCEEEEEeCCCC----C----c
Confidence            356788999997643  23345668899999999876 446667777777666542  234699999993    1    1


Q ss_pred             chHHHHHHHHHHcCCcEEE
Q 023316          226 TIATQARAYAKAMKATLFF  244 (284)
Q Consensus       226 ~~~~~~~~~a~~~~~~~~~  244 (284)
                      ...++.++++++.+++++.
T Consensus       158 ~~~~~~~~~~~~~~~~vl~  176 (179)
T cd03110         158 EIAEEIEDYCEEEGIPILG  176 (179)
T ss_pred             chHHHHHHHHHHcCCCeEE
Confidence            1245677788888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.57  E-value=0.00082  Score=60.51  Aligned_cols=93  Identities=17%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             EEEEEEEeCCCCcCCccc--------cc---cc-ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCC
Q 023316          147 RIAFSIWDVGGDSRSFDH--------VP---IA-CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKF  213 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~--------~~---~~-~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~  213 (284)
                      .+.+.+.||+|.......        ..   .. -...+..++|.|++... .+..+..+.+.      -.+--+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~------~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEA------VGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhh------CCCCEEEEECC
Confidence            356889999998653221        11   11 12467788999987532 22222222111      12336999999


Q ss_pred             CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       214 Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |.      ...   .-.+...+...++|+..++  +|++++++
T Consensus       270 D~------t~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        270 DG------TAK---GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CC------CCC---ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            93      111   2334555677799999887  78888877

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00057  Score=64.51  Aligned_cols=139  Identities=17%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+-++|+|++|+|||||+..++..--..... ..|     -...+.|+.-.+.++.++  ....++.. ..+-||.+|
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeE
Confidence            346788899999999999999987542211111 112     112345777778888887  33333332 346789999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-E-EEEeCCCCCCCCCCCcccchHHH--HHHHHHHc-CCcEEEEcCCCC
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-I-LIGTKFDDFVRLPPDLQWTIATQ--ARAYAKAM-KATLFFSSATHN  250 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-I-lv~nK~Dl~~~~~~~~~~~~~~~--~~~~a~~~-~~~~~~~Sa~~~  250 (284)
                      +..|.+-.-..+. ..+++-+..+   +.| | -|+++.||+...+.  -+.....  .+-|-+-+ |+.+|..|...+
T Consensus       139 LlIdgnfGfEMET-mEFLnil~~H---GmPrvlgV~ThlDlfk~~st--Lr~~KKrlkhRfWtEiyqGaKlFylsgV~n  211 (1077)
T COG5192         139 LLIDGNFGFEMET-MEFLNILISH---GMPRVLGVVTHLDLFKNPST--LRSIKKRLKHRFWTEIYQGAKLFYLSGVEN  211 (1077)
T ss_pred             EEeccccCceehH-HHHHHHHhhc---CCCceEEEEeecccccChHH--HHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence            9999865432222 2345544433   344 4 79999998522111  1112221  12333333 788888887654

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.55  E-value=0.00066  Score=63.24  Aligned_cols=141  Identities=16%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh------cCCCC----Cccc------------ccceeeeeEEEEEC-------------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYV------GNEQE----RSLQ------------MAGLNLINKTLMVQ-------------  144 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~------~~~~~----~~~~------------t~~~~~~~~~~~~~-------------  144 (284)
                      ..-|+++|.+||||||++..+.      +.+..    +.+.            ..+..+....-.-+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            3468899999999999999885      22211    1111            01112111000000             


Q ss_pred             CeEEEEEEEeCCCCcCCcc-----cccc-cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          145 GARIAFSIWDVGGDSRSFD-----HVPI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e~~~~-----~~~~-~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      ...+.+.|.||+|......     +... .....+-+++|.|.+-...-   ....+.+.+.  -.+--+|.||.|.   
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~--~~~~g~IlTKlD~---  251 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS--VDVGSVIITKLDG---  251 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc--cCCcEEEEECccC---
Confidence            0135778999999765321     1111 12356889999998654321   1222222211  1233699999993   


Q ss_pred             CCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                         . .+  --.+...+...+.|+.+++.  |++++++
T Consensus       252 ---~-ar--gG~aLs~~~~t~~PI~fig~--Ge~v~Dl  281 (429)
T TIGR01425       252 ---H-AK--GGGALSAVAATKSPIIFIGT--GEHIDDF  281 (429)
T ss_pred             ---C-CC--ccHHhhhHHHHCCCeEEEcC--CCChhhc
Confidence               1 11  22244555666777776643  5666554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=6.4e-05  Score=65.80  Aligned_cols=168  Identities=15%  Similarity=0.177  Sum_probs=94.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC---CCCccc---ccceeee-eEEEEEC--------------------------
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE---QERSLQ---MAGLNLI-NKTLMVQ--------------------------  144 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~---~~~~~~---t~~~~~~-~~~~~~~--------------------------  144 (284)
                      ...++|--+|.-.-||||++..+.+-.   |..+..   |+..-|. .+.+..+                          
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            347899999999999999999886532   221111   2211110 0111111                          


Q ss_pred             Ce--E----EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          145 GA--R----IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       145 ~~--~----~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      |.  +    -.+.+.|++|++-.-...-.-..-.|+.++....+..+.-....+-+..+.-. .-..++++-||+||   
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDl---  191 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL---  191 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhh---
Confidence            00  0    23578899998763221111112235666666554433221111222222111 12345789999998   


Q ss_pred             CCCCcccchHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          219 LPPDLQWTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      ..+....+..++...|.+.-   +++++.+||.-..|++-+.+.++..|.-...
T Consensus       192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence            33333333355566666543   6799999999999999999999999865543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.52  E-value=0.00045  Score=61.37  Aligned_cols=89  Identities=16%  Similarity=0.068  Sum_probs=58.5

Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                      ....+..+|++|+|.|..++.+.++  .++.++.   ...+.|+|.||+||   .+..   . .+...++.+..+.+++.
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL---~~~~---~-~~~~~~~~~~~~~~vi~   85 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDL---ADPE---V-TKKWIEYFEEQGIKALA   85 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhc---CCHH---H-HHHHHHHHHHcCCeEEE
Confidence            3446789999999999977654322  2222222   24566899999996   2211   1 11222223344677899


Q ss_pred             EcCCCCcCHHHHHHHHHHHHh
Q 023316          245 SSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +||+++.|++++.+.+...+.
T Consensus        86 vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         86 INAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             EECCCcccHHHHHHHHHHHHH
Confidence            999999999999988877664

>PRK13796 GTPase YqeH; Provisional

Probab=97.48  E-value=0.00019  Score=65.91  Aligned_cols=55  Identities=11%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC------C-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      .++.++|.+|||||||+|++.+...      . +..|.++.+  ...+.+++.   ..++||+|...
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi~~  222 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGIIH  222 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCccc
Confidence            4799999999999999999986431      1 333433333  233444332   25999999854

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.48  E-value=0.0038  Score=50.06  Aligned_cols=55  Identities=31%  Similarity=0.535  Sum_probs=39.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG  156 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~  156 (284)
                      .+||.+-|.||||||||+.++...--...+.-.|  +....+.-+|+.+-|.+.|++
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEcc
Confidence            6899999999999999999986432212222222  445566667888888888887

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.47  E-value=0.00016  Score=66.24  Aligned_cols=56  Identities=21%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC------C-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      .++.++|.+|||||||+|++.+...      . +..|.++.+..  .+.+++.   +.++||+|....
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~~~  217 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGIINS  217 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCCCh
Confidence            4899999999999999999998542      2 34443333322  3344222   459999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=4.4e-05  Score=65.32  Aligned_cols=183  Identities=15%  Similarity=0.265  Sum_probs=109.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECC-eEEEEEEEeCCCCcCCccccccccc----CC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACK----DA  172 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~l~Dt~G~e~~~~~~~~~~~----~a  172 (284)
                      ..+.-|++.|..++  |++++++...+-....+|...+|....-.-.+ .+-...+|+.+|......+...-++    ..
T Consensus        43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~  120 (363)
T KOG3929|consen   43 KFEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT  120 (363)
T ss_pred             cceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence            34667888887654  89999887665444445555554322211122 2223579999987764433322221    22


Q ss_pred             cEEEEEEeCCChhh-HHHHHHHHHHHH----------------------hH---------------CCCCce-EEEEeCC
Q 023316          173 VAILFMFDLTSRCT-LNSIVGWYSEAR----------------------KW---------------NQTAIP-ILIGTKF  213 (284)
Q Consensus       173 d~iilv~d~~~~~s-~~~~~~~~~~l~----------------------~~---------------~~~~~~-Ilv~nK~  213 (284)
                      -.+|++.|+++++. +-.+...++.++                      +.               .+-.+| ++||.|.
T Consensus       121 ~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKY  200 (363)
T KOG3929|consen  121 FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKY  200 (363)
T ss_pred             hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccch
Confidence            35788999998753 222222222221                      10               011234 6999999


Q ss_pred             CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCCCC
Q 023316          214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPII  282 (284)
Q Consensus       214 Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~  282 (284)
                      |.+..+..+.++..-.-.+.+|..+|+..+..|.+-..=.+.+-..+.+..+..+....--.+..||++
T Consensus       201 DvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG~~~~~s~~vD~NkPlf  269 (363)
T KOG3929|consen  201 DVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGIDKSKSICVDQNKPLF  269 (363)
T ss_pred             hhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcCCcCCcceeecCCCceE
Confidence            988777777777777778889999999888888875554455555666666766655444444455553

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.46  E-value=0.00072  Score=61.97  Aligned_cols=144  Identities=20%  Similarity=0.167  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC---CC-Ccccccceeee----------------eEEEEEC-C----------eEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE---QE-RSLQMAGLNLI----------------NKTLMVQ-G----------ARIA  149 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~---~~-~~~~t~~~~~~----------------~~~~~~~-~----------~~~~  149 (284)
                      --++++|++||||||++.++...-   +. ...--+..|.+                .....+. +          ....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            368899999999999999986431   11 00000000100                0000111 0          1345


Q ss_pred             EEEEeCCCCcCCcccc----ccc--ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCC-CCc-e-EEEEeCCCCCCCC
Q 023316          150 FSIWDVGGDSRSFDHV----PIA--CKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQ-TAI-P-ILIGTKFDDFVRL  219 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~~----~~~--~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~-~~~-~-Ilv~nK~Dl~~~~  219 (284)
                      +.++||+|...+....    ...  .....-.++|.+.+.. +...++..-+..+..... ..+ + =+|.||.|-    
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE----  293 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE----  293 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc----
Confidence            7799999977543221    111  1234456888888764 333433222222211111 112 2 388999992    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       220 ~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                        .   ...-.+..++...+.++.+++.  |++|.|
T Consensus       294 --t---~~~G~~l~~~~~~~lPi~yvt~--Gq~VPe  322 (374)
T PRK14722        294 --A---SNLGGVLDTVIRYKLPVHYVST--GQKVPE  322 (374)
T ss_pred             --C---CCccHHHHHHHHHCcCeEEEec--CCCCCc
Confidence              1   1234456667777888777653  666543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.43  E-value=0.00017  Score=63.98  Aligned_cols=59  Identities=14%  Similarity=0.148  Sum_probs=37.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--Cccc-c--cc--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      -.++++|.+|||||||+|.+.+....  ...+ +  .|  .+.....+...+.   ..++||+|...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999986543  2121 1  11  1222223333322   2489999998753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.001  Score=59.21  Aligned_cols=149  Identities=11%  Similarity=0.120  Sum_probs=92.0

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcC-------CCCC-----c---ccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGN-------EQER-----S---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~-------~~~~-----~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      +...++|--||.-.-|||||-..+..-       ++..     .   ...-|+.+....+.+.-..-.+.-.|++|+.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            445788999999999999998877421       1111     1   113356666666666555555667899999987


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-cccchHHHHHHHHHHcC-
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-LQWTIATQARAYAKAMK-  239 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~a~~~~-  239 (284)
                      -.-.-.-...-|+.|+|+..+|...-+. ++-+-..++-. -.-+++..||.|+   .+++ ....++-+++++..++| 
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQVG-V~~ivvfiNKvD~---V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQVG-VKHIVVFINKVDL---VDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHcC-CceEEEEEecccc---cCCHHHHHHHHHHHHHHHHHcCC
Confidence            5433333457799999999988643222 11111122221 1222577899997   4232 23334778889888886 


Q ss_pred             ----CcEEEEc---CCCC
Q 023316          240 ----ATLFFSS---ATHN  250 (284)
Q Consensus       240 ----~~~~~~S---a~~~  250 (284)
                          +|++.=|   |..+
T Consensus       206 ~Gd~~PvI~GSAL~ALeg  223 (449)
T KOG0460|consen  206 DGDNTPVIRGSALCALEG  223 (449)
T ss_pred             CCCCCCeeecchhhhhcC
Confidence                5677744   4455

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.40  E-value=0.0016  Score=57.48  Aligned_cols=94  Identities=11%  Similarity=0.092  Sum_probs=64.6

Q ss_pred             cccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA  240 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~  240 (284)
                      ..+.+--..+.|-.++++.+.+++ +..-+.+++-.+..  ....||++.||+||   ++++...  .++.....+..|.
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL---~~~~~~~--~~~~~~~y~~~gy  142 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDL---LDDEEAA--VKELLREYEDIGY  142 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEcccc---CcchHHH--HHHHHHHHHhCCe
Confidence            334444445677778888877775 45555666554433  35677999999997   3332221  1456667788899


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHH
Q 023316          241 TLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       241 ~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      +.+.+|++++.+++++...+..
T Consensus       143 ~v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         143 PVLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             eEEEecCcCcccHHHHHHHhcC
Confidence            9999999999999998877653

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.38  E-value=0.0017  Score=61.76  Aligned_cols=135  Identities=13%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC--------CCC----Ccccc------------cceeeeeEEEEE---------CCeE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN--------EQE----RSLQM------------AGLNLINKTLMV---------QGAR  147 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~--------~~~----~~~~t------------~~~~~~~~~~~~---------~~~~  147 (284)
                      -.|+|+|..|+||||++..|...        +..    +.+..            .++.+.  ...-         .-..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLRD  428 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhcc
Confidence            46889999999999999888642        110    11110            011111  0000         0023


Q ss_pred             EEEEEEeCCCCcCCccc-ccc--ccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFDH-VPI--ACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  222 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~-~~~--~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~  222 (284)
                      +.+.|.||+|....... ...  .+.  .....++|.+.+.  +..++...++.+..   ..+--+|.||.|.      .
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDE------t  497 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDE------T  497 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcC------c
Confidence            56889999997543211 100  010  1234566777653  34444444444432   2333699999993      1


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          223 LQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                       .  ..-.+.......+.++.+++.  |++|
T Consensus       498 -~--~lG~aLsv~~~~~LPI~yvt~--GQ~V  523 (559)
T PRK12727        498 -G--RFGSALSVVVDHQMPITWVTD--GQRV  523 (559)
T ss_pred             -c--chhHHHHHHHHhCCCEEEEeC--CCCc
Confidence             1  234556666777888777654  6666

>PRK14974 cell division protein FtsY; Provisional

Probab=97.38  E-value=0.0011  Score=60.11  Aligned_cols=93  Identities=15%  Similarity=0.152  Sum_probs=55.1

Q ss_pred             EEEEEEeCCCCcCCcc-cc---ccc--ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFD-HV---PIA--CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~~---~~~--~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      +.+.|.||+|...... +.   ..+  .-..|.+++|.|.+... ..+.+..+.+.      -.+--+|.||.|.     
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~------~~~~giIlTKlD~-----  291 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA------VGIDGVILTKVDA-----  291 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc------CCCCEEEEeeecC-----
Confidence            4578999999875321 11   111  12578889999986543 22222222211      1233699999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                       . ..  .-.+...+...+.|+.+++  +|++++++-
T Consensus       292 -~-~~--~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        292 -D-AK--GGAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             -C-CC--ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence             1 11  2234455556788988887  699998874

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.36  E-value=0.00019  Score=60.24  Aligned_cols=39  Identities=26%  Similarity=0.131  Sum_probs=27.9

Q ss_pred             HHHHHHHHHcCCcEEE--EcCCCCcCHHHHHHHHHHHHhCC
Q 023316          229 TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       229 ~~~~~~a~~~~~~~~~--~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ..++.+|-.-.+-.|-  |||.+.+-+.|+++-+....-+.
T Consensus       146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            4455555554555553  99999999999999887776544

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.35  E-value=0.0012  Score=53.36  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++.|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999998765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.30  E-value=0.0014  Score=60.99  Aligned_cols=150  Identities=18%  Similarity=0.228  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC------C------Ccccccce-------eeeeEEEE-EC-----------CeEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ------E------RSLQMAGL-------NLINKTLM-VQ-----------GARIA  149 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~------~------~~~~t~~~-------~~~~~~~~-~~-----------~~~~~  149 (284)
                      -+|+++|..|+||||++..+.+...      .      +.+...+.       +.....+. +.           -....
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d  271 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH  271 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence            4799999999999999998765310      0      00000000       00000000 00           01234


Q ss_pred             EEEEeCCCCcCCccc----ccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316          150 FSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  223 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~----~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~  223 (284)
                      +.+.||+|.......    ...+.  ....-.++|.|.+...  +.+..++..+   ..-.+-=+|.||.|-      . 
T Consensus       272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f---~~~~~~~~I~TKlDE------t-  339 (420)
T PRK14721        272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAY---QGHGIHGCIITKVDE------A-  339 (420)
T ss_pred             EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHh---cCCCCCEEEEEeeeC------C-
Confidence            679999997763221    11121  2345677888887432  2333333332   222222499999993      1 


Q ss_pred             ccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhC
Q 023316          224 QWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFN  266 (284)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~l----f~~l~~~i~~  266 (284)
                        ...-.+..++...+.++..++  +|++| +++    -+.+++.++.
T Consensus       340 --~~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll~  383 (420)
T PRK14721        340 --ASLGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHRIFK  383 (420)
T ss_pred             --CCccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHHHhc
Confidence              123446667777888887764  47777 444    2345555554

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.28  E-value=0.017  Score=53.40  Aligned_cols=159  Identities=11%  Similarity=0.189  Sum_probs=92.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc-----------------CCCCC-----cccccceeeeeE---EEEE-CCeEEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG-----------------NEQER-----SLQMAGLNLINK---TLMV-QGARIAFSIW  153 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~-----------------~~~~~-----~~~t~~~~~~~~---~~~~-~~~~~~l~l~  153 (284)
                      .+=|-|+|+-.+|||||+.||..                 ++..+     ..-|+.+.|...   .+.+ ++..+.+.+.
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            46789999999999999999952                 12211     111333333322   3344 5778889999


Q ss_pred             eCCCCcC-------------C-ccccc---------------cccc--CCcEEEEEEeCC----ChhhHHHHH-HHHHHH
Q 023316          154 DVGGDSR-------------S-FDHVP---------------IACK--DAVAILFMFDLT----SRCTLNSIV-GWYSEA  197 (284)
Q Consensus       154 Dt~G~e~-------------~-~~~~~---------------~~~~--~ad~iilv~d~~----~~~s~~~~~-~~~~~l  197 (284)
                      |+.|---             . ..-|.               ..+.  ..-++++.-|.+    .++.|.+.. +.+++|
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            9987311             0 00010               0111  122555555543    356665554 566666


Q ss_pred             HhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316          198 RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       198 ~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      ++.  .+|.|++.|-.+       .......+.+.++.++++++.+.+++. +-+-+++..-+-..+++-|
T Consensus       177 k~i--gKPFvillNs~~-------P~s~et~~L~~eL~ekY~vpVlpvnc~-~l~~~DI~~Il~~vLyEFP  237 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTK-------PYSEETQELAEELEEKYDVPVLPVNCE-QLREEDITRILEEVLYEFP  237 (492)
T ss_pred             HHh--CCCEEEEEeCCC-------CCCHHHHHHHHHHHHHhCCcEEEeehH-HcCHHHHHHHHHHHHhcCC
Confidence            554  457688888877       223334666788888999999998875 3334444444444444433

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.28  E-value=0.0018  Score=59.37  Aligned_cols=150  Identities=15%  Similarity=0.203  Sum_probs=79.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCC-CCccccc---cee---------------eeeEEEEE--C----------CeEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQ-ERSLQMA---GLN---------------LINKTLMV--Q----------GARI  148 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~-~~~~~t~---~~~---------------~~~~~~~~--~----------~~~~  148 (284)
                      .-.|+++|+.||||||-+-+|...-. ......+   ..|               .+...+.+  +          =...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            34688999999999998877743322 1111111   111               11111111  1          0235


Q ss_pred             EEEEEeCCCCcCCcccc----ccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeCCCCCCCCC
Q 023316          149 AFSIWDVGGDSRSFDHV----PIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP--ILIGTKFDDFVRLP  220 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~----~~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~--Ilv~nK~Dl~~~~~  220 (284)
                      .+.|.||+|...+....    ..|+.  ...-+.+|++.+...  +++...++.+   .  ..+  =++.||.|-     
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f---~--~~~i~~~I~TKlDE-----  350 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQF---S--LFPIDGLIFTKLDE-----  350 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHh---c--cCCcceeEEEcccc-----
Confidence            68899999988765322    22332  233445666665433  3444444443   2  233  399999992     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHHH----HHHHHHHhCC
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKIF----KFIMAKLFNL  267 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~lf----~~l~~~i~~~  267 (284)
                          ....-....+..+.+.|+-.+  .+|++| ++++    .++++.+...
T Consensus       351 ----T~s~G~~~s~~~e~~~PV~Yv--T~GQ~VPeDI~va~~~~Lv~~~~g~  396 (407)
T COG1419         351 ----TTSLGNLFSLMYETRLPVSYV--TNGQRVPEDIVVANPDYLVRRILGT  396 (407)
T ss_pred             ----cCchhHHHHHHHHhCCCeEEE--eCCCCCCchhhhcChHHHHHHHhcc
Confidence                222444555566666665554  357776 3343    4566665544

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.27  E-value=0.00034  Score=65.27  Aligned_cols=57  Identities=18%  Similarity=0.273  Sum_probs=43.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e  159 (284)
                      .+-|-+||-|||||||+||.|+|.+-.+-..|-|-+-+-.++.+...   +.+.|++|..
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence            57888999999999999999999987755555555544456655432   4588999965

>PRK00098 GTPase RsgA; Reviewed

Probab=97.27  E-value=0.00038  Score=62.14  Aligned_cols=57  Identities=16%  Similarity=0.134  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--Ccccc---cce--eeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t---~~~--~~~~~~~~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      .++++|.+|||||||+|.+.+....  ...+.   .|.  ......+.+++.   ..+.||+|...+
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~  229 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF  229 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence            5889999999999999999876533  22211   111  111223333322   258999998764

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.25  E-value=0.00047  Score=60.85  Aligned_cols=58  Identities=17%  Similarity=0.197  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--Cccc-c--cc--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      -.+++|.+|||||||+|++......  ...+ .  -|  .+.....+.+++..   .|.||+|...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            4679999999999999999863321  2211 1  11  12223344553222   277999998754

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.21  E-value=0.0016  Score=51.32  Aligned_cols=104  Identities=12%  Similarity=0.041  Sum_probs=60.6

Q ss_pred             EEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh
Q 023316          105 LLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (284)
Q Consensus       105 llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~  184 (284)
                      .-|.+|+|||++...+...--.....+.-+|....   .....+.+.++|+++...  ......+..+|.++++.+.+ .
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLG---LANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-P   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC---CCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-h
Confidence            45689999999976663221111111121221100   011116678999987533  33456788999999999875 4


Q ss_pred             hhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          185 CTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       185 ~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      .++......++.+.+........+|.|+++
T Consensus        79 ~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~  108 (139)
T cd02038          79 TSITDAYALIKKLAKQLRVLNFRVVVNRAE  108 (139)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            445555555555554433344469999998

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK13695 putative NTPase; Provisional

Probab=97.21  E-value=0.0085  Score=48.92  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +||+|.|.+|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998653

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=97.16  E-value=0.0058  Score=52.74  Aligned_cols=37  Identities=27%  Similarity=0.500  Sum_probs=32.7

Q ss_pred             EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS  183 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~  183 (284)
                      .+.|+.+|.+||..-+.-|-+.+.+..++|+|...++
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs  237 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS  237 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence            4669999999999988899999999999999987654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.16  E-value=0.00066  Score=63.63  Aligned_cols=91  Identities=14%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             EEEEEeCCCCcCCccc-----cc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCC
Q 023316          149 AFSIWDVGGDSRSFDH-----VP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPP  221 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~-----~~-~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~  221 (284)
                      .+.|.||+|.......     .. ...-.+|.+++|.|.+...   +.......   ......+ -+|.||.|-      
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~---F~~~l~i~gvIlTKlD~------  244 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKA---FHEAVGIGGIIITKLDG------  244 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHH---HHhcCCCCEEEEecccC------
Confidence            6789999997664311     11 1133678899999986642   22222222   2222223 488999993      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      . .+  --.+...+...+.|+.+++.  |++++++
T Consensus       245 ~-a~--~G~~ls~~~~~~~Pi~fig~--Ge~v~Dl  274 (437)
T PRK00771        245 T-AK--GGGALSAVAETGAPIKFIGT--GEKIDDL  274 (437)
T ss_pred             C-Cc--ccHHHHHHHHHCcCEEEEec--CCCcccC
Confidence            1 11  23456667777888877654  5555544

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.14  E-value=0.0031  Score=58.44  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=72.0

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhH--CCCCceEEEEeCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC----------TLNSIVGWYSEARKW--NQTAIPILIGTKFDD  215 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~----------s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl  215 (284)
                      ..+.++|++||...+.-|-+++.+.+++|+|.++++-+          .+.+.-...+.+-..  -...++||+.||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            45789999999988999999999999999999986421          122222223333221  224555899999995


Q ss_pred             CCC-----------CCCCccc--chHHHHHHHHHHc------------CCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          216 FVR-----------LPPDLQW--TIATQARAYAKAM------------KATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       216 ~~~-----------~~~~~~~--~~~~~~~~~a~~~------------~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +..           .|+-.-.  ...+.+..+.+..            .+-++.|+|.+..++..+|+.+...|
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            311           1111011  1234444443321            12345699999999999999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.14  E-value=0.0013  Score=53.73  Aligned_cols=83  Identities=16%  Similarity=0.064  Sum_probs=45.1

Q ss_pred             EEEEEEeCCCCcCCcc----ccccc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFD----HVPIA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~----~~~~~--~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                      ..+.+.||+|...+..    ....+  ....+.+++|.|.....   +...+...+.+...  .--+|.||.|..     
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~--~~~viltk~D~~-----  152 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG--ITGVILTKLDGD-----  152 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC--CCEEEEECCcCC-----
Confidence            4467899999753211    11111  12489999999986433   22234444433322  335778999941     


Q ss_pred             CcccchHHHHHHHHHHcCCcEEE
Q 023316          222 DLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                        .  ....+...+...++|+..
T Consensus       153 --~--~~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         153 --A--RGGAALSIRAVTGKPIKF  171 (173)
T ss_pred             --C--CcchhhhhHHHHCcCeEe
Confidence              1  122233366666776654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.13  E-value=0.0019  Score=59.47  Aligned_cols=139  Identities=17%  Similarity=0.257  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC----CCC------Cccc------------ccceeeeeEE--------EE-EC-CeEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN----EQE------RSLQ------------MAGLNLINKT--------LM-VQ-GARI  148 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~----~~~------~~~~------------t~~~~~~~~~--------~~-~~-~~~~  148 (284)
                      .+|+++|.+||||||++..+...    ...      +.+.            ..++.+....        +. .. ...+
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~  321 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  321 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence            57999999999999999998531    100      1110            0011111000        00 00 0125


Q ss_pred             EEEEEeCCCCcCCccc----ccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316          149 AFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  222 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~----~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~  222 (284)
                      .+.|.||+|.......    ...++  ...+.+++|.|.+...  +++..+++.+   ..-.+-=+|.||.|-      .
T Consensus       322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F---~~~~idglI~TKLDE------T  390 (436)
T PRK11889        322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF---KDIHIDGIVFTKFDE------T  390 (436)
T ss_pred             CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHh---cCCCCCEEEEEcccC------C
Confidence            6789999998653211    11222  2356788888875332  2333444443   221222499999993      1


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          223 LQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                       .  ..-.+..++...+.|+..++  +|++|.+
T Consensus       391 -~--k~G~iLni~~~~~lPIsyit--~GQ~VPe  418 (436)
T PRK11889        391 -A--SSGELLKIPAVSSAPIVLMT--DGQDVKK  418 (436)
T ss_pred             -C--CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence             1  13345666777788877764  3666644

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.08  E-value=0.0016  Score=59.58  Aligned_cols=92  Identities=12%  Similarity=0.147  Sum_probs=51.3

Q ss_pred             EEEEEEeCCCCcCCccc----cccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFDH----VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~----~~~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                      +.+.|.||+|.......    ...+..  ..+.+++|.+.+.  ...++..+++.   +..-.+--+|.||.|-      
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~---f~~l~i~glI~TKLDE------  354 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK---LAEIPIDGFIITKMDE------  354 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh---cCcCCCCEEEEEcccC------
Confidence            56789999998653221    111221  3456667766532  23333333333   2222222599999993      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      .   ...-.+..++...+.|+..+|.  |++|.+
T Consensus       355 T---~~~G~~Lsv~~~tglPIsylt~--GQ~Vpd  383 (407)
T PRK12726        355 T---TRIGDLYTVMQETNLPVLYMTD--GQNITE  383 (407)
T ss_pred             C---CCccHHHHHHHHHCCCEEEEec--CCCCCc
Confidence            1   1134466677778888877754  666654

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.03  E-value=0.0023  Score=47.45  Aligned_cols=82  Identities=16%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             EEEEc-CCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          103 ISLLG-DCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       103 I~llG-~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      |++.| .+|+||||+...+...--....+..-.|.       + ..+.+.++|+++....  .....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~-------d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDL-------D-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC-------C-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            56777 78999999877664321111112222221       1 1156789999986542  233667889999999876


Q ss_pred             CChhhHHHHHHHHH
Q 023316          182 TSRCTLNSIVGWYS  195 (284)
Q Consensus       182 ~~~~s~~~~~~~~~  195 (284)
                      + ..++..+..+++
T Consensus        72 ~-~~s~~~~~~~~~   84 (104)
T cd02042          72 S-PLDLDGLEKLLE   84 (104)
T ss_pred             C-HHHHHHHHHHHH
Confidence            4 556677766665

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.02  E-value=0.0085  Score=56.16  Aligned_cols=103  Identities=13%  Similarity=0.178  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCCcCCc----cccccccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSF----DHVPIACK---DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~----~~~~~~~~---~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      ..+.|.||+|.....    .....++.   ...-+.+|.+.+-..  .++...+..+   ..-.+-=+|.||.|-     
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f---~~~~~~~vI~TKlDe-----  369 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF---SRLPLDGLIFTKLDE-----  369 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh---CCCCCCEEEEecccc-----
Confidence            567899999986543    11222222   234667778775432  2333333333   211122499999992     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhC
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFN  266 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~l----f~~l~~~i~~  266 (284)
                          ......+..++...+.++..++.  |++| +++    -+.+++.++.
T Consensus       370 ----t~~~G~i~~~~~~~~lPv~yit~--Gq~VpdDl~~a~~~~l~~~ll~  414 (424)
T PRK05703        370 ----TSSLGSILSLLIESGLPISYLTN--GQRVPDDIKVANPEELVRLLLG  414 (424)
T ss_pred             ----cccccHHHHHHHHHCCCEEEEeC--CCCChhhhhhCCHHHHHHHHhc
Confidence                11234567777788888877654  6776 444    2334555554

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.99  E-value=0.0033  Score=41.33  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=30.7

Q ss_pred             CCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          171 DAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       171 ~ad~iilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      -.+++++++|.+..+  |.++....+++++..-.+.|.++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            357899999998765  56666688999998877778899999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.95  E-value=0.0037  Score=62.11  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCC-C-Cc-c-ccccee---------------eeeEEE-EEC-----------CeEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQ-E-RS-L-QMAGLN---------------LINKTL-MVQ-----------GARIAF  150 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~-~-~~-~-~t~~~~---------------~~~~~~-~~~-----------~~~~~l  150 (284)
                      -|+++|..||||||++.++.+.-. . .. . .-+..|               .....+ ...           -....+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            578999999999999999875321 1 10 0 000000               000000 000           022357


Q ss_pred             EEEeCCCCcCCcc-cc---ccc--ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316          151 SIWDVGGDSRSFD-HV---PIA--CKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  223 (284)
Q Consensus       151 ~l~Dt~G~e~~~~-~~---~~~--~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~  223 (284)
                      .|.||+|...... +.   ...  ....+-.++|.|.+.. +.+.++   .+.+.......+-=+|.||.|-      . 
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~i~glIlTKLDE------t-  336 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGEDVDGCIITKLDE------A-  336 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCCCCEEEEeccCC------C-
Confidence            8999999543221 11   111  1234567888888743 334333   2333221111122489999992      1 


Q ss_pred             ccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHHH----HHHHHHHhC
Q 023316          224 QWTIATQARAYAKAMKATLFFSSATHNINV-NKIF----KFIMAKLFN  266 (284)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~lf----~~l~~~i~~  266 (284)
                      .  ..-.+..+....++|+.+++  +|++| +++.    +.+++.++.
T Consensus       337 ~--~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~  380 (767)
T PRK14723        337 T--HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA  380 (767)
T ss_pred             C--CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence            1  13445666777788887765  47888 5652    345566655

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.90  E-value=0.0031  Score=52.82  Aligned_cols=92  Identities=15%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCCcCCccc----ccccc--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~----~~~~~--~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      +.+.+.||+|...+...    ...++  ...+-+++|.|.+... ..+.+...++.      -.+-=+|.||.|.     
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~------~~~~~lIlTKlDe-----  152 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEA------FGIDGLILTKLDE-----  152 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHH------SSTCEEEEESTTS-----
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhc------ccCceEEEEeecC-----
Confidence            45779999997664321    11111  2567888888887654 23322222221      1223578999992     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                       . ..  .-.+..++...+.|+-.+|-  |++|+++
T Consensus       153 -t-~~--~G~~l~~~~~~~~Pi~~it~--Gq~V~Dl  182 (196)
T PF00448_consen  153 -T-AR--LGALLSLAYESGLPISYITT--GQRVDDL  182 (196)
T ss_dssp             -S-ST--THHHHHHHHHHTSEEEEEES--SSSTTGE
T ss_pred             -C-CC--cccceeHHHHhCCCeEEEEC--CCChhcC
Confidence             1 11  34466677778888777654  6666443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.89  E-value=0.0037  Score=59.19  Aligned_cols=103  Identities=18%  Similarity=0.176  Sum_probs=55.6

Q ss_pred             EEEEEeCCCCcCCccc---ccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316          149 AFSIWDVGGDSRSFDH---VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  222 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~---~~~~~~~---ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~  222 (284)
                      .+.+.||+|.......   .-..+..   ..-.++|.|.+...  ..+.+.   +..+....+-=+|.||.|-       
T Consensus       336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i---~~~f~~~~~~g~IlTKlDe-------  403 (484)
T PRK06995        336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEV---VQAYRGPGLAGCILTKLDE-------  403 (484)
T ss_pred             CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHH---HHHhccCCCCEEEEeCCCC-------
Confidence            4679999995443210   0011111   22367888876432  222222   2222322333588999992       


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhCC
Q 023316          223 LQWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFNL  267 (284)
Q Consensus       223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~l----f~~l~~~i~~~  267 (284)
                        ....-.+..++...++++.+++  +|++| +++    -+.+++.++..
T Consensus       404 --t~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~  449 (484)
T PRK06995        404 --AASLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA  449 (484)
T ss_pred             --cccchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence              1124456677777888887764  47788 665    33455666553

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.89  E-value=0.0035  Score=46.96  Aligned_cols=101  Identities=13%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             EEEEc-CCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          103 ISLLG-DCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       103 I~llG-~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      |+++| .+|+||||+...+...--.. ...+...|.....    +.  .+.+.|+++....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----~~--D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----GD--DYVVVDLGRSLDE--VSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC----CC--CEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence            34444 89999999877764322111 2222222222110    11  5779999986542  33446788999999987


Q ss_pred             CCChhhHHHHHHHHHHHHhHCCC--CceEEEEeC
Q 023316          181 LTSRCTLNSIVGWYSEARKWNQT--AIPILIGTK  212 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~~~--~~~Ilv~nK  212 (284)
                      .+ ..++..+..+++.+++....  ....+|.|+
T Consensus        74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            54 55677777777777665432  233477775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=96.87  E-value=0.0027  Score=59.32  Aligned_cols=111  Identities=16%  Similarity=0.222  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC------------CCCC---cccccceeeeeEEEEE----------------CCeEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN------------EQER---SLQMAGLNLINKTLMV----------------QGARIA  149 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~------------~~~~---~~~t~~~~~~~~~~~~----------------~~~~~~  149 (284)
                      -++.++-.-.-|||||-..|+..            +|.+   +.+.-|+.+.+..+..                ++..+.
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            45778889999999999998632            1221   1112233333322221                345678


Q ss_pred             EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      +.+.|.+|+.+|.+.....++-.|+.++|.|.-+.-..+.-.-+.+.+   .....|+++.||.|
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~---~ERIkPvlv~NK~D  161 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI---AERIKPVLVMNKMD  161 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH---HhhccceEEeehhh
Confidence            999999999999999999999999999999987754333322222333   23567899999999

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=96.82  E-value=0.0093  Score=50.76  Aligned_cols=60  Identities=13%  Similarity=0.004  Sum_probs=34.6

Q ss_pred             EEEEeC-CCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          150 FSIWDV-GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       150 l~l~Dt-~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      +.+.|| ||.|.|.   +.-.+++|.+|+|.|.+. .|+....+. .+|.+...-.++.+|.||+|
T Consensus       136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg~k~i~~V~NKv~  196 (255)
T COG3640         136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELGIKRIFVVLNKVD  196 (255)
T ss_pred             EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhCCceEEEEEeecc
Confidence            455565 4444432   223478999999999864 444443333 22222222234459999999

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=96.79  E-value=0.0072  Score=54.66  Aligned_cols=31  Identities=16%  Similarity=0.468  Sum_probs=24.9

Q ss_pred             CCCCCceeeEEEEEcCCCCChHHHHHHHhcC
Q 023316           93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus        93 ~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ....+-.+.+|+++|...+|||||+--+...
T Consensus       126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHg  156 (641)
T KOG0463|consen  126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHG  156 (641)
T ss_pred             CCCccceeEEEEEEecccCCcceeEeeeeec
Confidence            3445666899999999999999998777544

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.77  E-value=0.0019  Score=52.73  Aligned_cols=52  Identities=27%  Similarity=0.496  Sum_probs=31.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV  155 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt  155 (284)
                      ||++-|++|+|||||+++++..--....+..|  |....+.-+|..+-|.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEEC
Confidence            68999999999999999987432112222223  23333334555555666665

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.74  E-value=0.0051  Score=49.07  Aligned_cols=58  Identities=12%  Similarity=0.008  Sum_probs=34.1

Q ss_pred             EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      .+.+.|.||+|....  . ..++..+|-+|++....-.+.+   .-....+.    ..--+++.||.|
T Consensus        91 ~~D~iiIDtaG~~~~--~-~~~~~~Ad~~ivv~tpe~~D~y---~~~k~~~~----~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS--E-VDIASMADTTVVVMAPGAGDDI---QAIKAGIM----EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh--h-hhHHHhCCEEEEEECCCchhHH---HHhhhhHh----hhcCEEEEeCCC
Confidence            356889999996532  2 2488899988888765422221   11111111    122389999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=0.003  Score=54.93  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=43.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCccccc---ceeeeeEEEEE--CCeEEEEEEEeCCCC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA---GLNLINKTLMV--QGARIAFSIWDVGGD  158 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~---~~~~~~~~~~~--~~~~~~l~l~Dt~G~  158 (284)
                      ..++|+.+|..|.|||||+..+.+-.|.....+.   ++.+...++.+  .+..+.+.+.||.|.
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf  105 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF  105 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence            3689999999999999999999998887332222   23333333333  567788999999994

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.70  E-value=0.0067  Score=49.94  Aligned_cols=87  Identities=14%  Similarity=0.046  Sum_probs=47.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEe--CC-CCcCCcccccccccCCcEEEEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD--VG-GDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D--t~-G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .++++|+.|+|||||++.+.+-..    ++.|      .+.+++..+.+..-+  .+ |+.+.-.+....+.+.+.+++=
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLD   96 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLI----PNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFD   96 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC----CCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            688999999999999999987543    2222      233444333221111  22 3333334555566677665552


Q ss_pred             --EeCCChhhHHHHHHHHHHHH
Q 023316          179 --FDLTSRCTLNSIVGWYSEAR  198 (284)
Q Consensus       179 --~d~~~~~s~~~~~~~~~~l~  198 (284)
                        ...-|..+.+.+.+|+.++.
T Consensus        97 EPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          97 EPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             CCcccCCHHHHHHHHHHHHHHH
Confidence              11224455555556666554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00959 ffh signal recognition particle protein

Probab=96.69  E-value=0.012  Score=55.20  Aligned_cols=93  Identities=14%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             EEEEEEeCCCCcCCcc-ccc---c--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFD-HVP---I--ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~~~---~--~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                      +.+.|.||+|...... +..   .  ..-..+.+++|.|.+..   ++...+...+....  .+-=+|.||.|-      
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~i~giIlTKlD~------  251 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--GLTGVVLTKLDG------  251 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--CCCEEEEeCccC------
Confidence            5578999999654321 111   1  12357888999998643   33334444443221  122488999992      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      . .  ..-.+...+...++|+.+++.  |++++++
T Consensus       252 ~-~--~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl  281 (428)
T TIGR00959       252 D-A--RGGAALSVRSVTGKPIKFIGV--GEKIDDL  281 (428)
T ss_pred             c-c--cccHHHHHHHHHCcCEEEEeC--CCChhhC
Confidence            1 1  123367777788898887655  5556554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=96.68  E-value=0.013  Score=55.55  Aligned_cols=64  Identities=17%  Similarity=0.114  Sum_probs=39.4

Q ss_pred             EEEEeCCCCcC-------------CcccccccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhHCCCCce-EEEEeCCC
Q 023316          150 FSIWDVGGDSR-------------SFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTAIP-ILIGTKFD  214 (284)
Q Consensus       150 l~l~Dt~G~e~-------------~~~~~~~~~~~ad~iilv~d~~~~~s-~~~~~~~~~~l~~~~~~~~~-Ilv~nK~D  214 (284)
                      ..+.|.+|.-.             ...+...|+.+.++||+|.--.+-+. -..+.+....   ..+.+.- |+|.+|.|
T Consensus       414 MVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq---~DP~GrRTIfVLTKVD  490 (980)
T KOG0447|consen  414 MVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQ---MDPHGRRTIFVLTKVD  490 (980)
T ss_pred             eEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHh---cCCCCCeeEEEEeecc
Confidence            56788888432             23456778999999999984322221 1223333332   2444444 99999999


Q ss_pred             CC
Q 023316          215 DF  216 (284)
Q Consensus       215 l~  216 (284)
                      |.
T Consensus       491 lA  492 (980)
T KOG0447|consen  491 LA  492 (980)
T ss_pred             hh
Confidence            74

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=96.68  E-value=0.0019  Score=54.66  Aligned_cols=66  Identities=23%  Similarity=0.212  Sum_probs=39.9

Q ss_pred             CCceEEEEeCCCCCCC----------CCCCc-ccchHHHHHHHHHHc----C-----C-cEEEEcCCCCcCHHHHHHHHH
Q 023316          203 TAIPILIGTKFDDFVR----------LPPDL-QWTIATQARAYAKAM----K-----A-TLFFSSATHNINVNKIFKFIM  261 (284)
Q Consensus       203 ~~~~Ilv~nK~Dl~~~----------~~~~~-~~~~~~~~~~~a~~~----~-----~-~~~~~Sa~~~~~v~~lf~~l~  261 (284)
                      +..+|+..||.||-+.          +|+.. .....+.+++|.-.+    +     + --.++.|.+.+|+.-+|..+-
T Consensus       266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk  345 (359)
T KOG0085|consen  266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK  345 (359)
T ss_pred             CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence            4566899999996322          11111 111234445554332    2     1 124588999999999999998


Q ss_pred             HHHhCCc
Q 023316          262 AKLFNLP  268 (284)
Q Consensus       262 ~~i~~~~  268 (284)
                      ..+++..
T Consensus       346 DtiLq~~  352 (359)
T KOG0085|consen  346 DTILQLN  352 (359)
T ss_pred             HHHHHhh
Confidence            8887654

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=96.62  E-value=0.0033  Score=57.46  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC--------CCC-Ccc--------cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN--------EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD  163 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~--------~~~-~~~--------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~  163 (284)
                      -+|-++..-.+||||.-.|++.-        ... .+.        ..-|+.+.+..+.++=+...+.+.||+|+.+|+-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            46778889999999998887421        111 111        1124555555555555556688999999999999


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCC
Q 023316          164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDD  215 (284)
Q Consensus       164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl  215 (284)
                      ....+++--|+++.|||.+-.-.-+.+.-|.+.    ..-.+| +...||+|.
T Consensus       118 everclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk  166 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDK  166 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhh
Confidence            899999999999999999876655566677654    223455 788999994

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.58  E-value=0.011  Score=55.07  Aligned_cols=137  Identities=15%  Similarity=0.171  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC-CC----------Cccc------------ccceeeeeEE-E-----EECCeEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE-QE----------RSLQ------------MAGLNLINKT-L-----MVQGARIAFS  151 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~-~~----------~~~~------------t~~~~~~~~~-~-----~~~~~~~~l~  151 (284)
                      .-++++|.+||||||++.+|.... ..          +.+.            ..++.+.... .     .+......+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999986421 00          0100            0111111000 0     0011234567


Q ss_pred             EEeCCCCcCCcc-c---cccccc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316          152 IWDVGGDSRSFD-H---VPIACK-----DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  222 (284)
Q Consensus       152 l~Dt~G~e~~~~-~---~~~~~~-----~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~  222 (284)
                      +.||+|...... .   ...+++     ...-.++|.|.+...  +++...+.   .+..-.+-=+|.||.|-      .
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~---~f~~~~~~glIlTKLDE------t  372 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLK---AYESLNYRRILLTKLDE------A  372 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHH---HhcCCCCCEEEEEcccC------C
Confidence            999999764221 1   111221     234678888887653  22222222   22212222599999992      1


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          223 LQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                       .  ..-.+..++...+.|+..++.  |++|
T Consensus       373 -~--~~G~il~i~~~~~lPI~ylt~--GQ~V  398 (432)
T PRK12724        373 -D--FLGSFLELADTYSKSFTYLSV--GQEV  398 (432)
T ss_pred             -C--CccHHHHHHHHHCCCEEEEec--CCCC
Confidence             1  133456667777888777654  5554

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.58  E-value=0.018  Score=46.79  Aligned_cols=84  Identities=8%  Similarity=-0.028  Sum_probs=50.7

Q ss_pred             EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  228 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~  228 (284)
                      .+.++|+++....  .....+..+|.+|++.+.+ ..++..+..+++.+.+.. .....+|.|+.|-    .   .....
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~~-~~~~~iv~N~~~~----~---~~~~~  132 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEALG-IKVVGVIVNRVRP----D---MVEGG  132 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHcC-CceEEEEEeCCcc----c---ccchh
Confidence            5789999876442  2344568899999998765 345666666666665522 2223589999983    1   11112


Q ss_pred             HHHHHHHHHcCCcEE
Q 023316          229 TQARAYAKAMKATLF  243 (284)
Q Consensus       229 ~~~~~~a~~~~~~~~  243 (284)
                      +....+.+.++.+++
T Consensus       133 ~~~~~~~~~~~~~v~  147 (179)
T cd02036         133 DMVEDIEEILGVPLL  147 (179)
T ss_pred             hHHHHHHHHhCCCEE
Confidence            223445555676654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.57  E-value=0.014  Score=41.78  Aligned_cols=68  Identities=15%  Similarity=0.214  Sum_probs=43.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc-ccccccCCcEEEEEEeC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDL  181 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~-~~~~~~~ad~iilv~d~  181 (284)
                      +++.|.+|+|||++...+...--...+         +...++    .+.+.|+++....... .......+|.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999998887543111111         222223    5678999887653321 14456788999999876


Q ss_pred             CC
Q 023316          182 TS  183 (284)
Q Consensus       182 ~~  183 (284)
                      ..
T Consensus        69 ~~   70 (99)
T cd01983          69 EA   70 (99)
T ss_pred             ch
Confidence            54

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.51  E-value=0.027  Score=52.13  Aligned_cols=94  Identities=13%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             EEEEEEEeCCCCcCCccc----ccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCC
Q 023316          147 RIAFSIWDVGGDSRSFDH----VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL  219 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~----~~~~~~~---ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~  219 (284)
                      .+.+.+.||+|.......    ...++..   ..-.++|.|.+...  +++...++.   +..-.+-=+|.||.|-    
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~---~~~~~~~~~I~TKlDe----  324 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQ---FSPFSYKTVIFTKLDE----  324 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHH---hcCCCCCEEEEEeccC----
Confidence            356789999997653321    1112221   22578999987653  333433333   3322233599999992    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH
Q 023316          220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKI  256 (284)
Q Consensus       220 ~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~l  256 (284)
                        .   ...-.+..++...+.|+..++  +|++| +++
T Consensus       325 --t---~~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl  355 (388)
T PRK12723        325 --T---TCVGNLISLIYEMRKEVSYVT--DGQIVPHNI  355 (388)
T ss_pred             --C---CcchHHHHHHHHHCCCEEEEe--CCCCChhhh
Confidence              1   113445666777788877664  47777 454

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.50  E-value=0.0041  Score=58.82  Aligned_cols=54  Identities=19%  Similarity=0.071  Sum_probs=31.5

Q ss_pred             CcccccccccCCcEEEEEEe-CCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          161 SFDHVPIACKDAVAILFMFD-LTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d-~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      .-++.+.+++++..++  +| +|+.-.-+.-.+.++.+.....+...|+|+.-.|+.
T Consensus       495 rvslaRa~lKda~Il~--~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll  549 (591)
T KOG0057|consen  495 RVSLARAFLKDAPILL--LDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLL  549 (591)
T ss_pred             HHHHHHHHhcCCCeEE--ecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhH
Confidence            4455556677766544  44 333222222345666677666666778888888863

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.45  E-value=0.017  Score=50.77  Aligned_cols=138  Identities=16%  Similarity=0.225  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC----CC------Cccc------------ccceeeeeEEEE----------E-CCeE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE----QE------RSLQ------------MAGLNLINKTLM----------V-QGAR  147 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~----~~------~~~~------------t~~~~~~~~~~~----------~-~~~~  147 (284)
                      -+++++|.+|+||||++..+...-    ..      ..+.            ..+..+... ..          . ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            589999999999999988774321    10      0000            011111100 00          0 0013


Q ss_pred             EEEEEEeCCCCcCCcc-c---ccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFD-H---VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~---~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                      +.+.+.||+|...... .   ...++  -..+-+++|.|.+...  +++..++..+   ..-.+-=+|.||.|-      
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f---~~~~~~~~I~TKlDe------  223 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF---KDIHIDGIVFTKFDE------  223 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHh---CCCCCCEEEEEeecC------
Confidence            5678999999875321 1   11122  2456688999876432  2333444433   322222599999993      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      . .  ..-.+..++...+.|+..++  +|++|.+
T Consensus       224 t-~--~~G~~l~~~~~~~~Pi~~it--~Gq~vp~  252 (270)
T PRK06731        224 T-A--SSGELLKIPAVSSAPIVLMT--DGQDVKK  252 (270)
T ss_pred             C-C--CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence            1 1  12345566677788877764  4666653

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.39  E-value=0.0028  Score=48.17  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +|+|.|.+||||||+.+.+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

...

>PRK08118 topology modulation protein; Reviewed

Probab=96.38  E-value=0.0029  Score=51.53  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ||+|+|.+|+|||||...+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999988653

>PRK10867 signal recognition particle protein; Provisional

Probab=96.37  E-value=0.036  Score=52.00  Aligned_cols=92  Identities=15%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCCcCCcc-ccc---cc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFD-HVP---IA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLP  220 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~~~---~~--~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~  220 (284)
                      +.+.|.||+|...... +..   .+  .-..+.+++|.|.+..   ++.......+.+   ...+ =+|.||.|-     
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~---~~~i~giIlTKlD~-----  252 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNE---ALGLTGVILTKLDG-----  252 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHh---hCCCCEEEEeCccC-----
Confidence            5678999999654321 111   11  1256778999997643   233333333332   1222 478899992     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                       . .+  .-.+...+...++|+.+++.  |++++++
T Consensus       253 -~-~r--gG~alsi~~~~~~PI~fig~--Ge~v~DL  282 (433)
T PRK10867        253 -D-AR--GGAALSIRAVTGKPIKFIGT--GEKLDDL  282 (433)
T ss_pred             -c-cc--ccHHHHHHHHHCcCEEEEeC--CCccccC
Confidence             1 11  23366677778888877655  5555544

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.36  E-value=0.0075  Score=56.07  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ..+|+|+|.+|+|||||++.|...
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999754

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=96.32  E-value=0.0074  Score=53.33  Aligned_cols=60  Identities=10%  Similarity=0.082  Sum_probs=37.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-------CcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e  159 (284)
                      ..++.+.|+|-||||||||+|.+......       ...+..+..+.. .+.+.... .+.+.||+|.-
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp-~vy~iDTPGil  207 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP-PVYLIDTPGIL  207 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC-ceEEecCCCcC
Confidence            34789999999999999999988554332       222322322221 13343332 26689999963

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=96.32  E-value=0.061  Score=48.52  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      .+|-|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          7 TLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            457799999999999999854

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=96.30  E-value=0.091  Score=44.28  Aligned_cols=88  Identities=18%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             EEEEEEEeCCCCcCCcccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCce-EEEEeCCCCCCCCCCC
Q 023316          147 RIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIP-ILIGTKFDDFVRLPPD  222 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~-~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~-Ilv~nK~Dl~~~~~~~  222 (284)
                      .+.+.+.|+.|.-....+. ....+.+|.+|++.+.+ ..++..+...++.++....  +... -++.|+.+.      .
T Consensus       116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~------~  188 (212)
T cd02117         116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT------D  188 (212)
T ss_pred             CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC------c
Confidence            3567788886654322221 11124789999998763 4555555544444444332  2223 389999993      1


Q ss_pred             cccchHHHHHHHHHHcCCcEEE
Q 023316          223 LQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       223 ~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                         ...+..+++.+.++.+++.
T Consensus       189 ---~~~~~~~~~~~~~~~~vl~  207 (212)
T cd02117         189 ---RETELIDAFAERLGTQVIH  207 (212)
T ss_pred             ---cHHHHHHHHHHHcCCCEEE
Confidence               2244567778878876554

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=0.011  Score=61.21  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCC--Cccc---ccceeeeeEEEEECCeEEEEEEEeCCCCcCC--------ccccccc-
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIA-  168 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~--~~~~---t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--------~~~~~~~-  168 (284)
                      -+|||.+|+||||++.. .+.+|.  ....   ..+........-+.+.   -.+.||+|...-        ...|..| 
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence            57999999999999765 344343  1111   1111101111112222   237799985332        1233333 


Q ss_pred             --------ccCCcEEEEEEeCCChh----hH-----HHHHHHHHHHHhHCCCCce-EEEEeCCCC
Q 023316          169 --------CKDAVAILFMFDLTSRC----TL-----NSIVGWYSEARKWNQTAIP-ILIGTKFDD  215 (284)
Q Consensus       169 --------~~~ad~iilv~d~~~~~----s~-----~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl  215 (284)
                              .+..++||+..|+.+--    ..     ..++.=++++++.-.-..| .|++||.||
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl  268 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL  268 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence                    35789999999985421    11     1122335556555444455 699999998

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.29  E-value=0.0033  Score=51.80  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .||+|+|.||+||||+..++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999776

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=96.25  E-value=0.14  Score=41.57  Aligned_cols=141  Identities=13%  Similarity=0.139  Sum_probs=91.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ......|+++|..+.++..|...+...+-.       .......  -..  +.    +..   +...    .=...|.|+
T Consensus        12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~-------~~l~Vh~--a~s--LP----Lp~---e~~~----lRprIDlIV   69 (176)
T PF11111_consen   12 ELNTATILLVGTEEALLQQLAEAMLEEDKE-------FKLKVHL--AKS--LP----LPS---ENNN----LRPRIDLIV   69 (176)
T ss_pred             CcceeEEEEecccHHHHHHHHHHHHhhccc-------eeEEEEE--ecc--CC----Ccc---cccC----CCceeEEEE
Confidence            344678999999999999999999863211       0110000  010  00    000   0011    114679999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |++|.++..|++.++.=+..+.....-+...++++-..-     ++...+..++..+++..+.++++.+.-.+.++...+
T Consensus        70 Fvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~-----~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l  144 (176)
T PF11111_consen   70 FVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGR-----ESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL  144 (176)
T ss_pred             EEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCc-----ccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence            999999999999988766666444444566666665552     222333478899999999999999888877777666


Q ss_pred             HHHHHHHH
Q 023316          257 FKFIMAKL  264 (284)
Q Consensus       257 f~~l~~~i  264 (284)
                      =+.+.+.+
T Consensus       145 AqRLL~~l  152 (176)
T PF11111_consen  145 AQRLLRML  152 (176)
T ss_pred             HHHHHHHH
Confidence            66666554

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK07261 topology modulation protein; Provisional

Probab=96.21  E-value=0.004  Score=50.91  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .||+|+|.+|+|||||...+..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.14  E-value=0.0031  Score=50.88  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999765

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.14  E-value=0.031  Score=45.93  Aligned_cols=39  Identities=26%  Similarity=0.143  Sum_probs=27.2

Q ss_pred             HHHHHHHHHcCCcEEE--EcCCCCcCHHHHHHHHHHHHhCC
Q 023316          229 TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       229 ~~~~~~a~~~~~~~~~--~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ..++.+|-+-.+-.|.  |||.+.+-|.|+++-+-+.+-+.
T Consensus       162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence            4455555555555554  99999999999998877666443

>KOG2484 consensus GTPase [General function prediction only]

Probab=96.12  E-value=0.005  Score=56.04  Aligned_cols=57  Identities=12%  Similarity=0.215  Sum_probs=39.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e  159 (284)
                      ...+++-|+|-|||||||+||+|...+..  ...++++..  -..+..+ ..  +.|.|.+|.-
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s--mqeV~Ld-k~--i~llDsPgiv  308 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS--MQEVKLD-KK--IRLLDSPGIV  308 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh--hhheecc-CC--ceeccCCcee
Confidence            44689999999999999999999988876  444433322  2333333 23  5588988864

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.12  E-value=0.0044  Score=48.49  Aligned_cols=20  Identities=25%  Similarity=0.328  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |+++|.+|+|||||+..+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999874

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.09  E-value=0.022  Score=43.80  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -+++.|++|+|||+|++.+...-
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.04  E-value=0.005  Score=52.84  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      |+++|++|||||||++-+.|-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987744

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=95.91  E-value=0.16  Score=45.79  Aligned_cols=75  Identities=9%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             CCcEEEEEEeCCChhhH-HHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcC
Q 023316          171 DAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSA  247 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~-~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa  247 (284)
                      .-|++|-|+|+.+-... .++......-...    --+||.||.||   .+++    ..+..+...+.++  ++++.+|.
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~----AD~ivlNK~Dl---v~~~----~l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF----ADVIVLNKTDL---VDAE----ELEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh----CcEEEEecccC---CCHH----HHHHHHHHHHHhCCCCeEEEccc
Confidence            45788999998664332 2122222221111    22899999997   2222    1344455555554  67888777


Q ss_pred             CCCcCHHHHH
Q 023316          248 THNINVNKIF  257 (284)
Q Consensus       248 ~~~~~v~~lf  257 (284)
                      . +....+++
T Consensus       185 ~-~~~~~~ll  193 (323)
T COG0523         185 G-DVDLAELL  193 (323)
T ss_pred             c-CCCHHHhh
Confidence            3 33333333

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=95.91  E-value=0.072  Score=49.54  Aligned_cols=102  Identities=15%  Similarity=0.272  Sum_probs=59.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--Cccc---c--cc----------------eeeeeEEEEEC------------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ---M--AG----------------LNLINKTLMVQ------------  144 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~---t--~~----------------~~~~~~~~~~~------------  144 (284)
                      .-+|+++|+.|||||||+.-+++.--.  ....   +  +|                .+|..+-+.++            
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG  692 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG  692 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence            458999999999999999988765322  1000   0  00                11111111111            


Q ss_pred             --CeEEEEEEEeCCCCcCCc-ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC
Q 023316          145 --GARIAFSIWDVGGDSRSF-DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ  202 (284)
Q Consensus       145 --~~~~~l~l~Dt~G~e~~~-~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~  202 (284)
                        ..--++.+-|.+|....+ .+....+...|++|+-=- |+.-..+++..+-+.|..++.
T Consensus       693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP-TNNLDIESIDALaEAIney~G  752 (807)
T KOG0066|consen  693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP-TNNLDIESIDALAEAINEYNG  752 (807)
T ss_pred             hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC-CCCcchhhHHHHHHHHHhccC
Confidence              112356788887766543 566777888888776543 333345666666667777654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.88  E-value=0.007  Score=47.05  Aligned_cols=23  Identities=17%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|..|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58899999999999999987754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.80  E-value=0.011  Score=53.36  Aligned_cols=36  Identities=22%  Similarity=0.490  Sum_probs=26.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEE
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARI  148 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~  148 (284)
                      ++++|++|||||||++.+.|-+-    ++      ...+.++|..+
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~----~~------~G~I~i~g~~v   67 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE----PT------SGEILIDGRDV   67 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC----CC------CceEEECCEEC
Confidence            78999999999999999987543    22      23556666653

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.78  E-value=0.01  Score=39.87  Aligned_cols=19  Identities=16%  Similarity=0.198  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 023316          103 ISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~  121 (284)
                      .+|.|+.|+|||||+..+.
T Consensus        26 tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999998875

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.77  E-value=0.0095  Score=40.87  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |.+.|.+|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=95.76  E-value=0.019  Score=52.65  Aligned_cols=129  Identities=14%  Similarity=0.170  Sum_probs=78.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT  182 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~  182 (284)
                      |.++|..|+|||||+.-+.|-..    |..|      .+.++|+.+     |-...|+|+++....+.+-+.+==.+...
T Consensus       352 vFliG~NGsGKST~~~LLtGL~~----PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~e  416 (546)
T COG4615         352 VFLIGGNGSGKSTLAMLLTGLYQ----PQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGPE  416 (546)
T ss_pred             EEEECCCCCcHHHHHHHHhcccC----CCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence            66999999999999998877533    2222      455666654     33344667777766665554443344444


Q ss_pred             ChhhHHHHHHHHHHHHhHCC----------------------------CCceEEEEeCCCCCCCCCCCcccchHHHHHHH
Q 023316          183 SRCTLNSIVGWYSEARKWNQ----------------------------TAIPILIGTKFDDFVRLPPDLQWTIATQARAY  234 (284)
Q Consensus       183 ~~~s~~~~~~~~~~l~~~~~----------------------------~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  234 (284)
                      ..-+.+.+..|++.+.-...                            ...||+|.-.+-  .+.++..++.-.....-.
T Consensus       417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA--ADQDPaFRR~FY~~lLp~  494 (546)
T COG4615         417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA--ADQDPAFRREFYQVLLPL  494 (546)
T ss_pred             cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh--ccCChHHHHHHHHHHhHH
Confidence            44567788899988753210                            124566655443  012233444445666666


Q ss_pred             HHHcCCcEEEEcCC
Q 023316          235 AKAMKATLFFSSAT  248 (284)
Q Consensus       235 a~~~~~~~~~~Sa~  248 (284)
                      .++.|-++|.+|--
T Consensus       495 LK~qGKTI~aIsHD  508 (546)
T COG4615         495 LKEQGKTIFAISHD  508 (546)
T ss_pred             HHHhCCeEEEEecC
Confidence            77778888877764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.73  E-value=0.0098  Score=45.32  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE  126 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~  126 (284)
                      -.++++|++|+|||+++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999999776443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.68  E-value=0.0095  Score=45.64  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998754

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK06217 hypothetical protein; Validated

Probab=95.59  E-value=0.011  Score=48.74  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .||+|+|.+|+|||||..++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.54  E-value=0.01  Score=46.36  Aligned_cols=20  Identities=25%  Similarity=0.396  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |+++|++|+|||+|+..+..
T Consensus         2 vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            79999999999999998864

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.49  E-value=0.011  Score=50.28  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|+++|++|+|||||++.+-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3889999999999999998653

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=95.49  E-value=0.059  Score=48.32  Aligned_cols=140  Identities=17%  Similarity=0.194  Sum_probs=77.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc----CC----------CC----Cccc----ccceeeeeEEEE-------E------C
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG----NE----------QE----RSLQ----MAGLNLINKTLM-------V------Q  144 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~----~~----------~~----~~~~----t~~~~~~~~~~~-------~------~  144 (284)
                      .+=|+++|-.|+||||-+-++..    +.          |-    ....    ..|.++......       +      .
T Consensus       139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak  218 (340)
T COG0552         139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK  218 (340)
T ss_pred             cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence            56789999999999998877632    11          11    0000    112222221100       0      0


Q ss_pred             CeEEEEEEEeCCCCcCCcc-cc------ccccc-----CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEe
Q 023316          145 GARIAFSIWDVGGDSRSFD-HV------PIACK-----DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGT  211 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e~~~~-~~------~~~~~-----~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~n  211 (284)
                      ...+.+.|.||+|.-.-.. +.      ...++     ..+=++++.|.+-. ++++.++.+.+..      ..-=+|.|
T Consensus       219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------~l~GiIlT  292 (340)
T COG0552         219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------GLDGIILT  292 (340)
T ss_pred             HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc------CCceEEEE
Confidence            1346688999999644211 10      01122     23448888898754 4555555443321      11148999


Q ss_pred             CCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       212 K~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |.|-    ...     --.+...+...++|+.++-.  |++++++
T Consensus       293 KlDg----tAK-----GG~il~I~~~l~~PI~fiGv--GE~~~DL  326 (340)
T COG0552         293 KLDG----TAK-----GGIILSIAYELGIPIKFIGV--GEGYDDL  326 (340)
T ss_pred             eccc----CCC-----cceeeeHHHHhCCCEEEEeC--CCChhhc
Confidence            9992    111     11234567778999888754  7888887

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.45  E-value=0.023  Score=47.89  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ..-|+|+|.+|||||||++.+....
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhcC
Confidence            4568899999999999999997543

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=95.44  E-value=0.074  Score=43.07  Aligned_cols=91  Identities=8%  Similarity=-0.025  Sum_probs=54.9

Q ss_pred             EEEEEEEeCCCCcCCcccccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCC-CCCCCC
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDF-VRLPPD  222 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~-~~~~~~  222 (284)
                      .+.+.+.|+++...  ......+  ..+|.+|++...+ ..+...+..+++.+.+..  .+. -+|.|+.+-. ++... 
T Consensus        67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~-  140 (169)
T cd02037          67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGK-  140 (169)
T ss_pred             CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCC-
Confidence            46688999998642  2222222  5789999998665 566777777777777653  233 4889998831 11011 


Q ss_pred             cccc-hHHHHHHHHHHcCCcEE
Q 023316          223 LQWT-IATQARAYAKAMKATLF  243 (284)
Q Consensus       223 ~~~~-~~~~~~~~a~~~~~~~~  243 (284)
                      .... .....+++++.++.+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~  162 (169)
T cd02037         141 KIYIFGKGGGEKLAEELGVPLL  162 (169)
T ss_pred             cccccCCccHHHHHHHcCCCEE
Confidence            1111 13456777887776654

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.41  E-value=0.016  Score=48.00  Aligned_cols=23  Identities=9%  Similarity=0.112  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      =|+|+|++|+|||||+++++...
T Consensus         6 ~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          6 LFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            38899999999999999998754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.41  E-value=0.014  Score=45.93  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|+|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.37  E-value=0.013  Score=50.98  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      ++++|+.|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            67999999999999999976

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.36  E-value=0.013  Score=44.63  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998654

...

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.35  E-value=0.014  Score=48.29  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|+|+|++|+|||||++.+.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999664

>PRK03839 putative kinase; Provisional

Probab=95.32  E-value=0.014  Score=47.77  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +|+|+|.+|+||||+..++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.28  E-value=0.015  Score=47.61  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|+|+|.+|+|||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998664

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK01889 GTPase RsgA; Reviewed

Probab=95.28  E-value=0.018  Score=52.72  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -+++++|.+|+|||||++.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            379999999999999999998754

>TIGR03263 guanyl_kin guanylate kinase

Probab=95.26  E-value=0.015  Score=47.46  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .|+|+|++|+|||||++.+.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            48899999999999999998743

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.21  E-value=0.016  Score=45.82  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|.|+|..|+|||||+..+++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>PRK14530 adenylate kinase; Provisional

Probab=95.17  E-value=0.017  Score=48.87  Aligned_cols=22  Identities=27%  Similarity=0.265  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+|+|+|.+|+||||+.+.+..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998853

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.17  E-value=0.15  Score=40.32  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|..|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.14  E-value=0.018  Score=43.19  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            57899999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.13  E-value=0.017  Score=48.04  Aligned_cols=21  Identities=29%  Similarity=0.461  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++++|++|||||||+|-+.+
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            388999999999999999865

>PRK13949 shikimate kinase; Provisional

Probab=95.11  E-value=0.019  Score=46.78  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +|+|+|.+|+|||||...+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988754

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.08  E-value=0.016  Score=47.18  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=16.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      --++|.|.+|+|||+|++++..
T Consensus        25 ~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   25 RNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             --EEE-B-TTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.07  E-value=0.018  Score=44.25  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ++|.|.+|+|||++++++....
T Consensus         7 ~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    7 LVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998753

>PRK14532 adenylate kinase; Provisional

Probab=95.06  E-value=0.019  Score=47.32  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+++|.||+||||+..++..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=95.05  E-value=0.18  Score=43.02  Aligned_cols=101  Identities=11%  Similarity=0.113  Sum_probs=61.7

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcc
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI--VGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQ  224 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~--~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~  224 (284)
                      +.+.|.|+.|...  ......+..+|.+|+=.-.+..+--+.+  .+|+.++.+.....+| -|+.|+.+-      ...
T Consensus        84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~------~~~  155 (231)
T PF07015_consen   84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA------ARL  155 (231)
T ss_pred             CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc------chh
Confidence            5678999988764  2345566789999887765543332332  3666666655445566 599999871      111


Q ss_pred             cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          225 WTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       225 ~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ........++.+  ++|++.+.-.+..-..++|.
T Consensus       156 ~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  156 TRAQRIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             hHHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            121222333333  48888888777766666665

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.04  E-value=0.021  Score=46.99  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      .++|+|+.|+|||||++.+.
T Consensus        23 ~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=95.04  E-value=0.011  Score=53.99  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCC
Q 023316           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (284)
Q Consensus        96 ~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G  157 (284)
                      .+...+-|-+||-||+||||++|.|-..+....-|--|.+   +...+=--.-.+-+.|++|
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET---KVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET---KVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc---hHHHHHHHHhceeEecCCC

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=95.03  E-value=0.028  Score=49.18  Aligned_cols=59  Identities=17%  Similarity=0.334  Sum_probs=41.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC--CC--C--cccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE--QE--R--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~--~~--~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      .=|.|+|...+|||.|+|++.+..  |.  .  ...|.|+-..... ...+..+.+.+.||.|...
T Consensus        22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~-~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEP-LPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE--TTSTCEEEEEEEEECBTT
T ss_pred             EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecc-cccccceeEEEecchhccc
Confidence            346699999999999999998743  33  1  1226676654443 2345668888999999866

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.02  E-value=0.021  Score=48.31  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57899999999999999998753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=94.97  E-value=0.08  Score=43.30  Aligned_cols=42  Identities=14%  Similarity=-0.011  Sum_probs=25.6

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |++++|.|+.++.+..+ ..+.+.+.-...+.|.|+|.||+||
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL   42 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDL   42 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhc
Confidence            78999999987643221 1223322111234566899999997

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.96  E-value=0.022  Score=48.09  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998753

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.94  E-value=0.021  Score=46.83  Aligned_cols=21  Identities=29%  Similarity=0.245  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+++|.+|+||||+++.+..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=94.94  E-value=0.12  Score=47.49  Aligned_cols=161  Identities=13%  Similarity=0.043  Sum_probs=85.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC----------C---------CCcccccceee------eeEEEEE-----CCeE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE----------Q---------ERSLQMAGLNL------INKTLMV-----QGAR  147 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~----------~---------~~~~~t~~~~~------~~~~~~~-----~~~~  147 (284)
                      ...++++++|.--+||||+=..++...          +         .+.|.+.-.|.      ..+++.+     .-..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            446899999999999999866653210          0         01111110000      0011111     1122


Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHHHHHHH--HHHHHhHCCCCceEEEEeCCCCCCCC-CC
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGW--YSEARKWNQTAIPILIGTKFDDFVRL-PP  221 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~~~~~~--~~~l~~~~~~~~~Ilv~nK~Dl~~~~-~~  221 (284)
                      -.+.+.|.+|+-.|..-.---..+||..++|.+....+   .|+.=-+-  ...+.+-..-...|++.||.|..-.- +.
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~  236 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN  236 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence            45789999999887643333346788888888763221   12211011  11122222233448999999952111 11


Q ss_pred             CcccchHHHHHHHHHHcC------CcEEEEcCCCCcCHHHHHH
Q 023316          222 DLQWTIATQARAYAKAMK------ATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~------~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ++-.+..+....+.+..|      ..|+.+|..+|.++++.-.
T Consensus       237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            111122444555555443      4688999999999987543

>PF05729 NACHT: NACHT domain

Probab=94.93  E-value=0.021  Score=45.40  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      ++|.|++|+|||+++..++..
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            679999999999999998754

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.88  E-value=0.022  Score=47.44  Aligned_cols=21  Identities=24%  Similarity=0.408  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |.|.|.+|+|||||++.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999998664

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK02496 adk adenylate kinase; Provisional

Probab=94.86  E-value=0.026  Score=46.43  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +||+|+|.+|+||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.86  E-value=0.02  Score=48.25  Aligned_cols=19  Identities=21%  Similarity=0.366  Sum_probs=16.9

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 023316          103 ISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~  121 (284)
                      .+++|++|||||||++.|-
T Consensus        36 TAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            4699999999999998883

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.86  E-value=0.025  Score=47.57  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .+.|+|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00235 udk uridine kinase

Probab=94.85  E-value=0.022  Score=47.88  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ..-|++.|.+|+|||||++.+.+.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.85  E-value=0.023  Score=48.52  Aligned_cols=20  Identities=20%  Similarity=0.552  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |+++|++|+|||||++.+.+
T Consensus        33 VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          33 VAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            88999999999999999876

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.84  E-value=0.023  Score=46.97  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.84  E-value=0.025  Score=47.38  Aligned_cols=23  Identities=30%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1161 Predicted GTPases [General function prediction only]

Probab=94.84  E-value=0.038  Score=49.94  Aligned_cols=92  Identities=16%  Similarity=0.103  Sum_probs=60.2

Q ss_pred             CCC-cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH
Q 023316          156 GGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY  234 (284)
Q Consensus       156 ~G~-e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  234 (284)
                      +|+ .++.......+...|+++-|.|+-++.+-.     ...+.+.....+.++|+||+||   .+.   .+..+-.+.+
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~-----~~~l~~~v~~k~~i~vlNK~DL---~~~---~~~~~W~~~~   86 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTR-----NPELERIVKEKPKLLVLNKADL---APK---EVTKKWKKYF   86 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEecccccccc-----CccHHHHHccCCcEEEEehhhc---CCH---HHHHHHHHHH
Confidence            443 345566667788999999999999887632     2334444444555999999997   222   2223334444


Q ss_pred             HHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          235 AKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       235 a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      .+..+...+.+|++.+.++..+-.
T Consensus        87 ~~~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          87 KKEEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HhcCCCccEEEEeecccCccchHH
Confidence            555567778888888887666653

>PF13173 AAA_14: AAA domain

Probab=94.83  E-value=0.022  Score=43.98  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      -++|.|..+||||||+.++.....
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            378999999999999999976543

>PRK08233 hypothetical protein; Provisional

Probab=94.82  E-value=0.024  Score=46.23  Aligned_cols=23  Identities=17%  Similarity=0.163  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .-|.+.|.+|+|||||.+++...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            55778899999999999999753

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.82  E-value=0.025  Score=48.45  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.81  E-value=0.023  Score=47.77  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.81  E-value=0.026  Score=46.91  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|..|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998864

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.80  E-value=0.026  Score=47.42  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-15
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-14
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		5e-14
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-13
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-13
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-13
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-13
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-13
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		7e-13
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-12
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-12
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-12
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		5e-12
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		5e-12
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		7e-12
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		8e-12
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		8e-12
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-12
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-11
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-11
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-11
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-11
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-11
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-11
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-11
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-11
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-11
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-11
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-11
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-11
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-11
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-11
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-11
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		5e-11
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		7e-11
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-11
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		7e-11
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-10
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-10
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-10
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-10
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-10
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-10
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-10
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-10
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-10
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-10
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-10
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		5e-10
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-10
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		8e-10
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-09
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-09
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-09
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-09
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		6e-09
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		7e-09
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-08
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-08
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-08
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-08
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-08
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-08
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-08
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-08
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-08
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-08
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-08
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-08
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-08
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		5e-08
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-08
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		6e-08
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		6e-08
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		6e-08
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		6e-08
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		6e-08
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		7e-08
1vg1_A	185	Gdp-bound Rab7 Length = 185		8e-08
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		9e-08
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-07
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-07
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-07
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-07
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-07
1byu_A	216	Canine Gdp-Ran Length = 216		1e-07
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-07
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-07
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-07
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-07
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-07
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-07
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-07
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-07
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-07
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-07
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		5e-07
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-07
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		5e-07
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		6e-07
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-07
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		7e-07
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-07
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		8e-07
3icq_B	171	Karyopherin Nuclear State Length = 171		8e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-06
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-06
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-06
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-06
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-06
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-06
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-06
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-06
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-06
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-06
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-06
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-06
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-06
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-06
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-06
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-06
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-06
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-06
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-06
1mh1_A	186	Small G-Protein Length = 186		3e-06
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-06
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-06
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-06
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-06
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-06
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-06
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-06
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		4e-06
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-06
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-06
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		6e-06
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		6e-06
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		7e-06
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-06
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-06
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-06
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		8e-06
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-05
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-05
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-05
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-05
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-05
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-05
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-05
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-05
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-05
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-05
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-05
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-05
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-05
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		7e-05
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-04
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-04
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-04

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +   G + + K L + G R+  +IWD  G 
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 122
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 123 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 122
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 123 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 136
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 137 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI L+GD  +GK+  +V++V ++   S +   G++   KT+ + G ++   IWD  G  
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A+ I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   R
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           +        A Q  A AK +      SSA ++ NVN+IF F +AKL
Sbjct: 124 V------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVG 156
           L  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+  Q     F IWD  
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  R     P+  + + A + ++D+T   T +++  W  E R+    +I + I     D 
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
                D++  +   A+ YA ++ A    +SA + IN+N++F
Sbjct: 123 T----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 79  AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLI 137
           +GL  +S +  +G   DS    +KI L+GD  +GK+  +V++V ++   S +   G++  
Sbjct: 2   SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 138 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197
            KT+ + G ++   +WD  G  R         + A+ I+ ++D+T   T  +I  W+   
Sbjct: 59  IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
Query: 198 RKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256
            +  N  A  +L+G K D   R+        A Q  A AK +      SSA ++ NVN+I
Sbjct: 119 NEHANDEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKNDDNVNEI 172
Query: 257 FKFIMAKL 264
           F F +AKL
Sbjct: 173 F-FTLAKL 179

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI L+GD  +GK+  +V++V ++   S +   G++   KT+ + G ++   IWD  G  R
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 219
                    + A  I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   R+
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                   A Q  A AK +      SSA ++ NVN+IF F +AKL
Sbjct: 125 ------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI L+GD  +GK+  +V++V ++   S +   G++   KT+ + G ++   +WD  G  
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A+ I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   R
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           +        A Q  A AK +      SSA ++ NVN+IF F +AKL
Sbjct: 128 V------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 166

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI L+GD  +GK+  +V++V ++   S +   G++   KT+ + G ++   +WD  G  R
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 219
                    + A  I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   R+
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                   A Q  A AK +      SSA ++ NVN+IF F +AKL
Sbjct: 125 ------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWD 154
           S L  LK+ LLGD  +GK+S + ++V +  + ++    G + + KT+  Q     F IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214
             G  R     P+  + + A + ++D+T   T +++  W  E R+    +I + I     
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           D      D++  +   A+ YA ++ A    +SA + IN+N++F
Sbjct: 122 DLT----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 160

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           ++ K+ LLGD   GK+S V+++V ++    QE ++   G    ++TL V  A + F IWD
Sbjct: 11  INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 67
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 213
             G  R     P+  + A A + +FD+T++ +      W  E + + N   +  L G K 
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 264
           D       D +   A  A+ YA+  +  LFF  +SA    NV +IF  I  +L
Sbjct: 128 DLL-----DARKVTAEDAQTYAQ--ENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
           S+G D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   
Sbjct: 2   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIP 206
           I   +WD  G  R    +P   +D+ A + ++D+T+  +      W  + R +     I 
Sbjct: 62  IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           +L+G K D    L    Q +I    R  AK +      +SA    NV ++F+ + A L  
Sbjct: 122 MLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176
Query: 267 LPWTVKRN 274
           +  T  R+
Sbjct: 177 MESTQDRS 184

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
             +P D       +ARA+A+    +   +SA  + NV + FK I+ +++ +
Sbjct: 126 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+ ++GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+ ++GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           +   K+ LLG+  +GK+S V+++V  +    QE ++Q A    + +T+ +    + F IW
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAA---FLTQTVCLDDTTVKFEIW 59
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTK 212
           D  G  R     P+  + A A + ++D+T+  T      W  E ++     I I L G K
Sbjct: 60  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 119
Query: 213 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
            D   +   + Q     +A+AYA         +SA   +NVN+IF  I  KL
Sbjct: 120 ADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+ ++GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  T      W  E ++     I I L G K D 
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   + Q     +A+AYA         +SA   +NVN+IF  I  KL
Sbjct: 121 ASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 65  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 125 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 10/180 (5%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S  Y  D DL+  KI L+GD  +GK++ + ++  NE    S    G+    +TL ++G R
Sbjct: 3   SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI 207
           I   IWD  G  R         + AV  L ++D++   +  +   W SE R+     + +
Sbjct: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV 121
Query: 208 -LIGTKFD-DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
            LIG K D   +R  P        +++ +A+  +     +SA ++ NV+K F+ ++  ++
Sbjct: 122 GLIGNKSDLAHLRAVP------TEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 7/188 (3%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
           S+G D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIP 206
           +   +WD  G  R    +P   +D+   + ++D+T+  +      W  + R +     I 
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 124
Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           +L+G K D    L    Q +I    R  AK +      +SA    NV ++F+ + A L  
Sbjct: 125 MLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179
Query: 267 LPWTVKRN 274
           +  T  R+
Sbjct: 180 MESTQDRS 187

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  T      W  E ++     I I L G K D 
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   + Q     +A+AYA         +SA   +NVN+IF  I  KL
Sbjct: 123 ASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
           S L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   I   +WD
Sbjct: 2   SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 213
             G  R    +P   +D+ A + ++D+T+  +      W  + R +     I +L+G K 
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           D    L    Q +I    R  AK +      +SA    NV ++F+ + A L
Sbjct: 122 D----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
           S +  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+        F IWD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214
             G  R     P+  + + A + ++D+T + +  ++  W  E ++     I + I     
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
           D      D++      A+ YA+++ A +  +SA + IN+ ++F+ I
Sbjct: 139 DL----SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 123 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P   + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 65  GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +   D Q     +A++YA         +SA  + NVN+IF  I  KL
Sbjct: 125 ANKRAVDFQ-----EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++ +
Sbjct: 141 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           V+ K+ L+GD  +GKT  +V++          +   G++  NK L V G ++   +WD  
Sbjct: 9   VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 214
           G  R         +DA A+L ++D+T++ + ++I  W +E  ++ Q  + + L+G K D
Sbjct: 69  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ ++GD  +GK+S ++++  N    S +   G++   +T+ + G ++   IWD  G  
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R         +    ++ ++D+TS  +  ++  W  E  +       IL+G K DD    
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDD---- 125
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
            P+ +      A  +A  M   LF +SA  N+NV ++F  I
Sbjct: 126 -PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++G+  +GKTSF+ +Y  +    + +   G++   KT+     RI   IWD  G  
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 218
           R         + A+  + M+D+T+  + N++  W ++ + ++   A  +L+G K D    
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 121
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
              D +   + + R  A  +    F +SA  NINV + F+
Sbjct: 122 -MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 160

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 8/180 (4%)
Query: 87  TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQG 145
           T SSG D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++ 
Sbjct: 2   TMSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTA 204
             +   +WD  G  R    +P   +D+   + ++D+T+  + +    W  + R +     
Sbjct: 61  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 205 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           I +L+G K D       D +     +    AK +      +SA    NV ++F+ + A L
Sbjct: 121 IIMLVGNKTD-----LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           S +   K+ LLG+  +GK+S V+++V G   E      G   + +++ +    + F IWD
Sbjct: 4   SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKF 213
             G  R     P+  + A A + ++D+T++ T      W  E ++    +I I L G K 
Sbjct: 64  TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKA 123
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKR 273
           D   +   + +     +A+AYA         +SA   +NVN +F  I  K   LP +  +
Sbjct: 124 DLANKRMVEYE-----EAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK---LPKSEPQ 175
Query: 274 NL 275
           NL
Sbjct: 176 NL 177

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GKTSF+ +Y  +    + +   G++   KT+     RI   IWD  G  
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFD-DFV 217
           R         + A+  L M+D+ ++ +  ++  W ++ + ++   A  IL+G K D +  
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
           R+ P      A   R  A  +    F +SA  NINV ++F+
Sbjct: 143 RVVP------AEDGRRLADDLGFEFFEASAKENINVKQVFE 177

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  V ++  G   ER     G++   KTL +QG R+   IWD  G  
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 214
           R         + A   +  +D+T R +  S+  W  + RK+     + +LIG K D
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 146
           D D D + +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA   
Sbjct: 5   DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 147 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 199
                ++   +WD  G  R         +DA+  L MFDLTS+ +  ++  W S  +A  
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 200 WNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK---- 255
           + +    +LIG K D      PD +     QAR  A+      F +SA    NV K    
Sbjct: 124 YCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 256 IFKFIMAKL 264
           +   IM ++
Sbjct: 179 LLDLIMKRM 187

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++ +
Sbjct: 129 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
           L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDD 215
           G  R    +P   +D+   + ++D+T+  +      W  + R +     I +L+G K D 
Sbjct: 64  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD- 122
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNL 275
              L    Q +I    R  AK +      +SA    NV ++F+ + A L  +  T  R+ 
Sbjct: 123 ---LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSR 178
Query: 276 TIGEPIID 283
              E +ID
Sbjct: 179 ---EDMID 183

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 132 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 146
           D D D + +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA   
Sbjct: 5   DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 147 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 199
                ++   +WD  G  R         +DA+  L MFDLTS+ +  ++  W S  +A  
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 200 WNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK---- 255
           + +    +LIG K D      PD +     QAR  A+      F +SA    NV K    
Sbjct: 124 YCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 256 IFKFIMAKL 264
           +   IM ++
Sbjct: 179 LLDLIMKRM 187

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 126 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  G  
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVR 218
           R    +P   +D+   + ++D+T+  +      W  + R +     I +L+G K D    
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD---- 117
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           L    Q +I    R  AK +      +SA    NV ++F+ + A L
Sbjct: 118 LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           + S+K+ LLG+  +GK+S V+++V N+  E      G   + + + +    + F IWD  
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
           G  R     P   ++A A L ++D+T   +      W  E  +     I I L+G K D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID- 119
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 264
              L    +  +A +        K  LFF +SA    NVN +F  I  K+
Sbjct: 120 --XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  G  
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVR 218
           R    +P   +D+   + ++D+T+  +      W  + R +     I +L+G K D    
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTD---- 118
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           L    Q TI  +    AK +      +SA    NV ++F+ + + L  
Sbjct: 119 LADKRQITIE-EGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 16/173 (9%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++GD  +GKT    ++  G   +R+    G++   + + + G RI   +WD  G  
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 160 R-SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFD-- 214
           R     V    ++  A++F++D+T+  + +S+  W  E ++      IP IL+G K D  
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NINVNKIFKFIMAKL 264
             +++P DL       A+ +A      LF +SA +   N +V  IF  +  KL
Sbjct: 141 SAIQVPTDL-------AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++GD  +GKT    ++  G   +R+    G++   + + + G RI   +WD  G  
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 160 R-SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFD-- 214
           R     V    ++  A++F++D T+  + +S+  W  E ++      IP IL+G K D  
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NINVNKIFKFIMAKL 264
             +++P DL       A+ +A      LF +SA +   N +V  IF  +  KL
Sbjct: 150 SAIQVPTDL-------AQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--------RIA 149
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QG         ++ 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARKWNQTAIPI 207
             +WD  G  R         +DA+  L MFDLTS+ +  ++  W S  +A  + +    +
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK----IFKFIMAK 263
           LIG K D      PD +     QAR  A       F +SA    NV K    +   IM +
Sbjct: 146 LIGNKAD-----LPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 264 L 264
           +
Sbjct: 201 M 201

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++G+  +GKTSF+ +Y  +    + +   G++   KT+     RI   IWD  G  
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 218
           R         + A   +  +D+T+  + N++  W ++ + ++   A  +L+G K D    
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 124
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
              D +   + + R  A  +    F +SA  NINV + F+
Sbjct: 125 -XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 91  GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA 146
           G  TD D   L K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 147 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 196
                   ++   +WD  G  R         +DA   L  FDLTS+ +  ++  W S  +
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 197 ARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255
           A  + +    +LIG K D      PD +     QAR  A+      F +SA    NV K
Sbjct: 121 ANAYCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 91  GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA 146
           G  TD D   L K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 147 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 196
                   ++   +WD  G  R         +DA   L  FDLTS+ +  ++  W S  +
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 197 ARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255
           A  + +    +LIG K D      PD +     QAR  A+      F +SA    NV K
Sbjct: 121 ANAYCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ ++G+  +GKTSF+ +Y  +    + +   G++   KT+     R+   IWD  G  
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFD-DFV 217
           R         + A+  + M+D+T+  + N++  W ++ + ++   A  IL+G K D +  
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
           R+ P        + +  A+ +    F +SA  NI+V + F+
Sbjct: 144 RVVP------TEKGQLLAEQLGFDFFEASAKENISVRQAFE 178

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+  LG+  +GKTS + ++  +  + + Q   G++ ++KTL +    +   +WD  G  R
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA-RKWNQTAIPILIGTKFDDFVRL 219
               +P   +D+ A + ++D+T+R +  +   W  +   +  +  I  L+G K D     
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD----- 117
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             DL+     +    A+        +SA    N+  +FK   +KL
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIA 149
           GYD D      KI L+GD  +GK++ + ++  +E    S    G+    +T+ V+  +I 
Sbjct: 4   GYDYD---YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIK 60
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-L 208
             IWD  G  R         + AV  L ++D++   +  +   W +E R+     + + L
Sbjct: 61  AQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGL 120
Query: 209 IGTKFD--DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           IG K D      +P D       +A+ +A   +     +SA ++ NV+K F+ ++  +F 
Sbjct: 121 IGNKSDLAHLRAVPTD-------EAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQ 173
Query: 267 L 267
           +
Sbjct: 174 M 174

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR-IAFSIWDVGGD 158
            KI L+GD  +GK++ + ++  +E    S    G+    K++ ++  + I   IWD  G 
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD-DF 216
            R         + AV  L ++D+T + +  +I  W  E R    + I I L+G K D   
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
           +R+  D        A  YAK  K     +SA    NV   F  ++ +++N+
Sbjct: 128 LRVIND------NDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNV 172

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           + KI L GD  +GK+SF+++   NE +E      G++   KTL+V G R    +WD  G 
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 214
            R         + A  +L ++D+T   +  +I  W           +PI L+G K D
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD-DFV 217
           R         + AV  L +FDLT   T   +  W  E     + T + +L+G K D    
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
           R  P        +AR +A+        +SA  + NV   F+ ++ ++F
Sbjct: 146 REVP------TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD-DFV 217
           R         + AV  L +FDLT   T   +  W  E     + T + +L+G K D    
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
           R  P        +AR +A+        +SA  + NV   F+ ++ ++F
Sbjct: 131 REVP------TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V G  +   IWD  G  
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A   L ++D+TSR T NS+  W ++AR   +   + IL G K D    
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD---- 141
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           L P+ + T    +R +A+  +     +SA    NV + F
Sbjct: 142 LDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAF 179

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           L++ ++G   +GKTS + ++  +   E      G++   KT+ ++G +I   IWD  G  
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 160 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R F+ +  A  + A  I+ ++D+T + T + +  W     K+ ++ A  +L+G K D   
Sbjct: 87  R-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD--- 142
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF 257
               D + T   Q   +A+ +    F  +SA  N NV++IF
Sbjct: 143 -CETDREIT-RQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 13/190 (6%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
           V LK+ +LGD  +GKTS + +YV  +     +   G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 211
             R F  + +A  + A   + +FD+T+  T  ++  W  E    A   +    P +++G 
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
           K D    L      T   QA  Y+K      F +SA   INV + F+ I          V
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 272 KRNLTIGEPI 281
           +      EPI
Sbjct: 181 ELYNEFPEPI 190

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIA 149
           G   D D +  KI L+G+  +GKT  V ++  G          G++ + KT+ + G ++ 
Sbjct: 18  GSMEDYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 76
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPIL 208
             IWD  G  R         + A A++  +D+T   +   +  W  E  ++ +   I +L
Sbjct: 77  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 209 IGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           +G K D   R     Q     +A  +++A       +SA  + NV K+F  +  +L
Sbjct: 137 VGNKIDLAERREVSQQ-----RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A   L ++D+TSR T N++  W ++AR   +Q  + IL G K D    
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           L  D + T    +R +A+  +     +SA    NV + F     K+ N
Sbjct: 127 LDADREVTFLEASR-FAQENELMFLETSALTGENVEEAFVQCARKILN 173

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   +
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 146 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 127 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 127 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
           L +LKI ++G+  +GK+S ++++  +  +  L    G++   KT+ V G +   +IWD  
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFD 214
           G  R     P   + A  ++ ++D+T R T   +  W +E   +      +  L+G K D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  R
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 219
                    + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   + 
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 121 VVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 137 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGESEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 72
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 73  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 133 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDVGGD 158
           LK+ +LGD  +GKTS + +YV ++  +  +   G + + K + V G ++A   +WD  G 
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 159 SRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGTK 212
            R F  + +A  + A   + ++D+T+  +  +I  W  E    A   +    P +++G K
Sbjct: 69  ER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 213 FDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIFKFI 260
            D         +      A+  AK++    LF +SA + INV+  F+ I
Sbjct: 128 ID----AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   +
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 129 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 13/190 (6%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
           V LK+ +LGD  +GKTS + +YV  +     +   G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 211
             R F  + +A  + A   + +FD+T+  T  ++  W  E    A   +    P +++G 
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
           K D   R       T   QA  Y+K      F +SA   INV + F+ I          V
Sbjct: 126 KIDFENRQVA----TKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 272 KRNLTIGEPI 281
           +      EPI
Sbjct: 181 ELYNEFPEPI 190

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK   ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 137 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   +
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F    A++
Sbjct: 154 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
           V LK+ +LGD  +GKTS + +YV  +     +   G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 211
             R F  + +A  + A   + +FD+T+  T  ++  W  E    A   +    P +++G 
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
           K D    L      T   QA  Y+K      F +SA   INV + F+ I
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTI 169

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 13/190 (6%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
           V LK+ +LGD  +GKTS + +YV  +     +   G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 211
             R F  + +A  + A   + +FD+T+  T  ++  W  E    A   +    P +++G 
Sbjct: 67  LER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
           K D    L      T   QA  Y+K      F +SA   INV + F+ I          V
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 272 KRNLTIGEPI 281
           +      EPI
Sbjct: 181 ELYNEFPEPI 190

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 68  GQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 68  GQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 72
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 73  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 133 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 8/171 (4%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  K+ L+GD   GKT+FV +++  E E+  +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 61  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 120
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 121 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A   L ++D+TSR T N++  W ++AR   +Q  + IL G K D    
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 127
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           L  D + T    +R +A+  +     +SA    +V + F     K+ N
Sbjct: 128 LDADREVTFLEASR-FAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 8/171 (4%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  K+ L+GD   GKT+FV +++  E E+  +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 19/182 (10%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQ------- 144
           D D D + +K   LGD  +GKTS + +Y  G    + +   G++   K ++ +       
Sbjct: 5   DGDYDYL-IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 145 ---GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
              G RI   +WD  G  R         +DA+  L +FDLT+  +  ++  W S+ +   
Sbjct: 64  VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 202 QTAIP--ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 259
            +  P  +L G K D       D +     +AR  A+      F +SA +  N++   + 
Sbjct: 124 YSENPDIVLCGNKSD-----LEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178
Query: 260 IM 261
           ++
Sbjct: 179 LL 180

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIA 149
           +G +    + S+K+ L+GD   GKTS ++ +       S            L V+G  + 
Sbjct: 24  AGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
Query: 150 FSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPI 207
             IWD  G    +D + P+   DA  +L  FD+TS  + ++I   WY E   + +    I
Sbjct: 84  LHIWDTAGQD-DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII 142
Query: 208 LIGTKFD 214
           ++G K D
Sbjct: 143 VVGCKTD 149

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 68  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 8/175 (4%)
Query: 95  DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIW 153
           + ++ + K+ L+GD   GKT+FV +++  E E+  +   G+ +   +       I F +W
Sbjct: 7   NGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVW 66
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 213
           D  G  +          +A   + MFD+TSR T  ++  W+ +  +  +    +L G K 
Sbjct: 67  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 126
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
           D   R        +  +   + +      +  SA  N N  K F ++  KL   P
Sbjct: 127 DVKER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 174

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 64  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 123
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 124 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 168

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A   L ++D+T R T N +  W ++AR   N   + ILIG K D  + 
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD--LE 148
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
              D+ +    +A+ +A+        +SA    NV   F     K++
Sbjct: 149 AQRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A   L ++D+T R T N +  W ++AR   N   + ILIG K D  + 
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD--LE 133
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
              D+ +    +A+ +A+        +SA    NV   F     K++
Sbjct: 134 AQRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 11  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 69
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 70  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 129
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 130 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 174

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + +  ++  W  E  ++ ++    +L+G K D   +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 130 KVVD-----NTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A   L ++D+TSR T N++  W ++AR   +Q  + IL G K D    
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 124
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           L  D + T    +R +A+  +     +SA    +V + F     K+ N
Sbjct: 125 LDADREVTFLEASR-FAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + A  I+ ++D+T + +  ++  W  E  ++ ++    +L+G K D   +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D      T A+ +A ++      +SA +  NV + F  + A++
Sbjct: 130 KVVD-----NTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 10/172 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  +           A   +  FD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
            R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK+ LLGD  +GK+S + +YV N+   ++    G+  +N+ L V G  +   IWD  G  
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 214
           R         + A   L  F +  R +  ++  W  E   +     P     +++G K D
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 8/174 (4%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWD 154
            ++ + K+ L+GD   GKT+FV +++  E E+  +   G+ +   +       I F +WD
Sbjct: 1   GEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWD 60
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214
             G  +          +A   + MFD+TSR T  ++  W+ +  +  +    +L G K D
Sbjct: 61  TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD 120
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
              R        +  +   + +      +  SA  N N  K F ++  KL   P
Sbjct: 121 VKER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 167

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 8/173 (4%)
Query: 97  DLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDV 155
           ++ + K+ L+GD   GKT+FV +++  E E+  +   G+ +   +       I F +WD 
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215
            G  +          +A   + MFD+TSR T  ++  W+ +  +  +    +L G K D 
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
             R        +  +   + +      +  SA  N N  K F ++  KL   P
Sbjct: 121 KER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 166

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ L+GD Q GKT+ +     +    +            L  +  R+  S+WD  G S  
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 71
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD----- 214
           +D+V P+   D+ A+L  FD++   T++S +  W +E   +  +   +LIG K D     
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 131
Query: 215 -DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 268
              + L    Q  I+  Q  A AK + A ++   S+ T   +++ IF+       N P
Sbjct: 132 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ L+GD Q GKT+ +     +    +            L  +  R+  S+WD  G S  
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 70
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD----- 214
           +D+V P+   D+ A+L  FD++   T++S +  W +E   +  +   +LIG K D     
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 130
Query: 215 -DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 268
              + L    Q  I+  Q  A AK + A ++   S+ T   +++ IF+       N P
Sbjct: 131 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ L+GD Q GKT+ +     +    +            L  +  R+  S+WD  G S  
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 87
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD----- 214
           +D+V P+   D+ A+L  FD++   T++S +  W +E   +  +   +LIG K D     
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147
Query: 215 -DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 268
              + L    Q  I+  Q  A AK + A ++   S+ T   +++ IF+       N P
Sbjct: 148 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 9/165 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K   +GD  +GKT  ++ Y GN           +  +  ++V G+ +   +WD  G   
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPI-LIGTKFD---- 214
                P++ + A   L  F L S+ +  +I   W  E + +    IPI L+GTK D    
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHY-APGIPIVLVGTKLDLRDD 125
Query: 215 -DFVRLPPDLQWTIATQARAYAKAMKATLFFS-SATHNINVNKIF 257
             F++  P        Q     K + A  +   S+    NV  +F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 22  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 80
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
           S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D
Sbjct: 81  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 138

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GK+  ++++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + +  I+ ++D+T + + N +  W  E  ++   T + +L+G K D  ++
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 139
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
               +++ +   A+ +A A K     +SA  + NV   F
Sbjct: 140 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 175

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 85
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
           S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D
Sbjct: 86  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  ++++     +    +  G+    + + + G +I   IWD  G  
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG-Q 69
Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
            SF  +  +  + A   L ++D+T R T N +  W  +AR+  N   + +LIG K D   
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           R     +     +  A+A+        +SA    NV + F
Sbjct: 130 RREVKKE-----EGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 64
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
           S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D
Sbjct: 65  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 122

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GK+  ++++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + +  I+ ++D+T + + N +  W  E  ++   T + +L+G K D  ++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
               +++ +   A+ +A A K     +SA  + NV   F
Sbjct: 127 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GK+  ++++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
           R         + +  I+ ++D+T + + N +  W  E  ++   T + +L+G K D  ++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
               +++ +   A+ +A A K     +SA  + NV   F
Sbjct: 127 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 71
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 128

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 80
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 137

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V++K+ ++G+  +GK+S + +Y  G   +   +  G++ + + + V    +   +WD  G
Sbjct: 4   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
               FD +  A  + A A + +F  T R +  +I  W  +           L+  K D  
Sbjct: 64  -QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID-- 120
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
                D       +A   AK +K   + +S   ++NV+++FK++  K
Sbjct: 121 ---LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 65
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 122

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 150
           G    S + ++K  ++GD  +GK   ++ Y  N           +  +  +MV G  +  
Sbjct: 1   GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 60
Query: 151 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPIL 208
            +WD  G    +D + P++       L  F L S  +  ++   WY E R        IL
Sbjct: 61  GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 119
Query: 209 IGTKFD 214
           +GTK D
Sbjct: 120 VGTKLD 125

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV---QGARIAFSIWDV 155
           ++ KI L+GD  +GKT+++ + +    E++   A +  +N  +     QG  I F++WD 
Sbjct: 10  LTYKICLIGDGGVGKTTYINRVLDGRFEKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI 209
            G  +      +    A   +  FD+TSR T  ++  W  E +       PI++
Sbjct: 69  AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 64
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 121

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  ++++     +    +  G+    + + + G +I   IWD  G  
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
            SF  +  +  + A   L ++D+T R T N +  W  +AR+ + + + I LIG K D   
Sbjct: 82  -SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           R     +     +  A+A+        +SA    NV + F
Sbjct: 141 RRDVKRE-----EGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        +L+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 118

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        +L+GTK D
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G   
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
            +D + P++       L  F L S  + + +   WY E R        IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G   
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
            +D + P++       L  F L S  + + +   WY E R        IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G   
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
            +D + P++       L  F L S  + + +   WY E R        IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   WY E R        +L+GTK D
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 214
           R         + +   L  F +    +  ++  W  E   +     P     +++G K D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 214
           R         + +   L  F +    +  ++  W  E   +     P     +++G K D
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 8/165 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  + ++  +    + +   G++   +T+ + G RI   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 218
           R         + A+ I+ ++D+T+  + ++I  W     +     +  +++G K D    
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD---- 122
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
              D +     +    A         +SA  NINV   F F +A+
Sbjct: 123 -VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR 165

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 214
           R         + +   L  F +    +  ++  W  E   +     P     +++G K D
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K   +GD  +GKT  ++ Y  N           +  +  ++V G  +   +WD  G   
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
                P++ + A   +  F L S+ +  ++   W  E R +      IL+GTK D
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +    S +   G++   +T+ ++   +   IWD  G  
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVR 218
           R         + A  I+ ++D+T R + +++  W  E  ++    +  +L+G K D   +
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                +   + + R  A +       +SA +  NV + F  +  ++
Sbjct: 130 -----RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 8/165 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  + ++  +    + +   G++   +T+ + G RI   IWD  G  
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 218
           R         + A+ I+ ++D+T+  + ++I  W     +     +  +++G K D    
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD---- 124
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
              D +     +    A         +SA  NINV   F F +A+
Sbjct: 125 -VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR 167

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K   +GD  +GKT  ++ Y  N           +  +  ++V GA +   +WD  G   
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
                P++ + A   +  F L S+ +  ++   W  E + +      +L+GTK D
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 123

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 5/173 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K   +GD  +GKT  ++ Y  N+          +  +  + V G  +   +WD  G   
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKF---DDF 216
                P++ + A   +  F L S+ +  +++  W  E R++      +L+GTK    DD 
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDK 129
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFS-SATHNINVNKIFKFIMAKLFNLP 268
             L        +TQ     K + A  +   S+    NV  +F   +  +   P
Sbjct: 130 GYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 96  SDLVSLKISLLGDCQIGKTS----FVVKYVGNEQERSLQMAGLNLINKTLMVQG-ARIAF 150
           S +  LKI +LGD   GKTS    F  +  G + ++++   GL+   + + + G   +  
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI---GLDFFLRRITLPGNLNVTL 58
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA----IP 206
            IWD+GG +     +      A  +L ++D+T+  +  ++  WY+  +K ++ +    + 
Sbjct: 59  QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV 118
Query: 207 ILIGTKFD 214
            L+G K D
Sbjct: 119 ALVGNKID 126

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 150
           G  +   + ++K  ++GD  +GKT  ++ Y  N           +  +  +MV    +  
Sbjct: 1   GGGSGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNL 60
Query: 151 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPIL 208
            +WD  G    +D + P++       L  F L S  +  ++   W+ E R    +   IL
Sbjct: 61  GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 119
Query: 209 IGTKFD 214
           +GTK D
Sbjct: 120 VGTKLD 125

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV    +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   W+ E R    +   IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 118

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV    +   +WD  G  
Sbjct: 9   AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 67
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++       L  F L S  +  ++   W+ E R    +   IL+GTK D
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 124

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +LKI ++GD  +GKT  ++ +   E   +         +  +  +       +WD  G  
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG-Q 81
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++  D+  +L  F + +R + ++I   W  E + +  TA  +L+G K D
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +LKI ++GD  +GKT  ++ +   E   +         +  +  +       +WD  G  
Sbjct: 22  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG-Q 80
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
             +D + P++  D+  +L  F + +R + ++I   W  E + +  TA  +L+G K D
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG--------------------WYSEAR 198
             +D + P++    V   +  D+TSR     I                      WY E R
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 199 KWNQTAIPILIGTKFD 214
                   IL+GTK D
Sbjct: 124 HHCPNTPIILVGTKLD 139

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 206
            I F IWD  G  R    VP+  + A   + +FD+++  TL+    W ++  K +   I 
Sbjct: 92  NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL-KISSNYII 150
Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
           IL+  K D   +   D+      + + YA+        +SA    N+  IF  +  +++
Sbjct: 151 ILVANKIDKN-KFQVDI-----LEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-18
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	8e-18
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-17
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-17
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-17
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-17
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-17
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-17
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	7e-17
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	8e-17
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	8e-17
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	8e-17
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	8e-17
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	9e-17
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	9e-17
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	9e-17
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	9e-17
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-16
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-16
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-16
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-16
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-16
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-16
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-16
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-16
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-16
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-16
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	4e-16
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	7e-16
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	8e-16
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	8e-16
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	9e-16
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-15
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-15
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-15
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-15
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-15
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-15
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-15
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-15
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	5e-15
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-15
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-15
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-15
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	8e-15
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-14
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-14
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-14
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-13
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-13
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-13
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-13
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-13
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-13
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-13
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-13
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-13
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-13
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-12
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-11
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-10
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-10
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-10
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	8e-10
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-09
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-09
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-09
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-09
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-09
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-09
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-09
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-09
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-09
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	6e-09
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	7e-09
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-08
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-08
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-08
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-08
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	5e-08
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	6e-08
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-08
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	8e-08
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-07
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-04
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-04

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  K+ L+GD   GKT+FV +++  E +++ +   G+ +           I F++WD  G
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73

Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
             + F  +       A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 74  QEK-FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI- 131

Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
                D +  +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 132 ----KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 77.9 bits (192), Expect = 8e-18
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 6/170 (3%)

Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           + S+K+ LLG+  +GK+S V+++V N+  E      G   + + + +    + F IWD  
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 157 GDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 214
           G  R F  + P   ++A A L ++D+T   +      W  E  +  ++  I  L+G K D
Sbjct: 61  GQER-FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119

Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                    +     +    A+      F +SA    NVN +F  I  K+
Sbjct: 120 --XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 7/180 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S+G D  + L   K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64

Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP 206
           +   +WD  G  R    +P   +D+   + ++D+T+  +      W  + R       I 
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 124

Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           +L+G K D       D +     +    AK +      +SA    NV ++F+ + A L  
Sbjct: 125 MLVGNKTDL-----ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 6/182 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
            S     S     KI L GD  +GK+SF+++   NE +E      G++   KTL+V G R
Sbjct: 18  GSAKSFSSQKA-YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER 76

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 206
               +WD  G  R F  +  +  + A  +L ++D+T   +  +I  W           +P
Sbjct: 77  TVLQLWDTAGQER-FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP 135

Query: 207 I-LIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           I L+G K D       + Q  +        A    A    +SA    N+ +    +  ++
Sbjct: 136 IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

Query: 265 FN 266
             
Sbjct: 196 KK 197

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 76.8 bits (190), Expect = 2e-17
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 13/178 (7%)

Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIA 149
           G +     V++K+ ++G+  +GK+S + +Y      +   +  G++ + + + V    + 
Sbjct: 1   GSE-----VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVR 55

Query: 150 FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPIL 208
             +WD  G    FD +  A  + A A + +F  T R +  +I  W  +           L
Sbjct: 56  LMLWDTAGQEE-FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTAL 114

Query: 209 IGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           +  K D       D       +A   AK +K   + +S   ++NV+++FK++  K   
Sbjct: 115 VQNKIDL-----LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 76.9 bits (190), Expect = 3e-17
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 12/184 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           SSG D D     LKI ++G+  +GK+S ++++  +          G++   KT+ V G +
Sbjct: 5   SSGMDEDVLTT-LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK--WNQTA 204
              +IWD  G  R F  +  +  + A  ++ ++D+T R T   +  W +E          
Sbjct: 64  AKLAIWDTAGQER-FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI 122

Query: 205 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           + +L+G K D   R           +   +A+        +SA     V   F+ ++ K+
Sbjct: 123 VNMLVGNKIDKENREVD------RNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176

Query: 265 FNLP 268
              P
Sbjct: 177 IQTP 180

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 76.9 bits (190), Expect = 3e-17
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
             G    +D   L++ ++G   +GKTS + ++  +   E      G++   KT+ ++G +
Sbjct: 16  PRGSPRPADFK-LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 74

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 205
           I   IWD  G  R F+ +  A  + A  I+ ++D+T + T + +  W     K+ ++ A 
Sbjct: 75  IRLQIWDTAGQER-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE 133

Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 264
            +L+G K D         +     Q   +A+ +    F  +SA  N NV++IF  ++  +
Sbjct: 134 LLLVGNKLDC-----ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

Query: 265 FN 266
             
Sbjct: 189 LK 190

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 76.8 bits (189), Expect = 5e-17
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
              +  G      +   K+ L+GD Q GKT+ +     +   E  +     N     L  
Sbjct: 12  ENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN-YTACLET 70

Query: 144 QGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWN 201
           +  R+  S+WD  G    +D+V P+   D+ A+L  FD++   T++S +  W +E   + 
Sbjct: 71  EEQRVELSLWDTSGSPY-YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC 129

Query: 202 QTAIPILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKAMKATLFF--SSATHNIN 252
            +   +LIG K D        + L    Q  I+  Q  A AK + A ++   S+ T   +
Sbjct: 130 PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 189

Query: 253 VNKIF 257
           ++ IF
Sbjct: 190 IHSIF 194

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 75.2 bits (186), Expect = 7e-17
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ LLG+  +GKTS V++Y  N+  ++ +   G + + K L + G R+  +IWD  G  R
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 219
                PI  +D+   + ++D+T   +   +  W  E RK         ++G K D     
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL---- 123

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
               +     +A +YA+++ A  + +SA  N  + ++F  +  ++ 
Sbjct: 124 -EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 75.8 bits (187), Expect = 8e-17
 Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 11/163 (6%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           +LKI ++GD  +GKT  ++ +   E     +     N  +  +  +       +WD  G 
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQ 81

Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDF 216
              +D + P++  D+  +L  F + +R + ++I   W  E + +  TA  +L+G K D  
Sbjct: 82  EE-YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD-- 138

Query: 217 VRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 257
             L  D    +   +     + +    +  +S+   I +N++F
Sbjct: 139 --LRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 75.3 bits (186), Expect = 8e-17
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ ++GD  +GK+S ++++  N      +   G++   +T+ + G ++   IWD  G  
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218
           R F  +     +    ++ ++D+TS  +  ++  W  E  +       IL+G K DD   
Sbjct: 70  R-FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDD--- 125

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
             P+ +      A  +A  M   LF +SA  N+NV ++F  I   +  
Sbjct: 126 --PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 75.7 bits (187), Expect = 8e-17
 Identities = 40/185 (21%), Positives = 87/185 (47%), Gaps = 10/185 (5%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
           S   +  +  + D +  K+ ++G+  +GKTSF+ +Y  +      +   G++   KT+  
Sbjct: 9   SGRENLYFQGNFDYM-FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR 67

Query: 144 QGARIAFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-N 201
              R+   IWD  G  R +  +  A  + A+  + M+D+T+  + N++  W ++ + +  
Sbjct: 68  HEKRVKLQIWDTAGQER-YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW 126

Query: 202 QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
             A  IL+G K D       + +     + +  A+ +    F +SA  NI+V + F+ ++
Sbjct: 127 DNAQVILVGNKCDM-----EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181

Query: 262 AKLFN 266
             + +
Sbjct: 182 DAICD 186

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 75.2 bits (186), Expect = 8e-17
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 7/171 (4%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           + +   K+ LLG+  +GK+S V+++V  +  E      G   + +T+ +    + F IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKF 213
             G  R     P+  + A A + ++D+T+  +      W  E ++  +   +  L G K 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           D       + +     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 122 DL-----ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 76.2 bits (188), Expect = 9e-17
 Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 11/183 (6%)

Query: 91  GYDTDSDL-VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGL-NLINKTLMVQGAR 147
           G  +     ++ KI L+GD  +GKT+++ + +    ++      G  N     L  QG  
Sbjct: 1   GPGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV 60

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 206
           I F++WD  G  +    +       A   +  FD+TSR T  ++  W  E +       P
Sbjct: 61  IKFNVWDTAGQEK-KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP 119

Query: 207 I-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
           I +   K D       + Q           K      F  SA    N    F  +     
Sbjct: 120 IVVCANKIDI-----KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174

Query: 266 NLP 268
             P
Sbjct: 175 GRP 177

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 75.7 bits (187), Expect = 9e-17
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 160 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R +  +  A  + AV  L ++D+    T  ++  W  E R   +   + +L+G K D   
Sbjct: 90  R-YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-- 146

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
                L+     +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 147 ---RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 74.9 bits (185), Expect = 9e-17
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI L+GD  +GK+  +V++V ++     +   G++   KT+ + G ++   IWD  G  
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R F  +  A  + A+ I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   
Sbjct: 64  R-FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           R+        A Q  A AK +      SSA ++ NVN+IF  +   +  
Sbjct: 123 RVVT------ADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 75.3 bits (186), Expect = 9e-17
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
               S      S +  LK+ LLGD  +GK+S V ++V +          G + + KT+  
Sbjct: 8   HHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC 67

Query: 144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQ 202
                 F IWD  G  R     P+  + + A + ++D+T + +  ++  W  E ++   +
Sbjct: 68  GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE 127

Query: 203 TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMA 262
             +  + G K D       D++      A+ YA+++ A +  +SA + IN+ ++F+ I  
Sbjct: 128 NIVMAIAGNKCDL-----SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISR 182

Query: 263 KL 264
           ++
Sbjct: 183 QI 184

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  R
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 161 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
            +  +  A  + AV  L ++D+    T  ++  W  E R   +   + +L+G K D    
Sbjct: 67  -YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL--- 122

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
               L+     +ARA+A+    +   +SA  + NV + FK I+ +++ 
Sbjct: 123 --RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S      SD +  K+ L+G+  +GKTSF+ +Y  +      +   G++   KT+     R
Sbjct: 12  SGLVPRGSDYM-FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 205
           I   IWD  G  R +  +  A  + A+  L M+D+ ++ +  ++  W ++ + +    A 
Sbjct: 71  IKLQIWDTAGQER-YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ 129

Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
            IL+G K D       D +   A   R  A  +    F +SA  NINV ++F+ ++  + 
Sbjct: 130 VILVGNKCDL-----EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184

Query: 266 N 266
            
Sbjct: 185 E 185

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S   D   D +  K+ L+GD  +GKT  V ++      ER     G++   KTL +QG R
Sbjct: 19  SGDPDEQYDFL-FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 205
           +   IWD  G  R F  +  +  + A   +  +D+T R +  S+  W  + RK+     +
Sbjct: 78  VKLQIWDTAGQER-FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV 136

Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 264
            +LIG K D       +L+     +A++ A+         +SA  + NV + F  +  +L
Sbjct: 137 QLLIGNKSDL-----SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

Query: 265 FN 266
             
Sbjct: 192 IM 193

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
             G   D D +  KI L+G+  +GKT  V ++             G++ + KT+ + G +
Sbjct: 16  PRGSMEDYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 205
           +   IWD  G  R F  +  +  + A A++  +D+T   +   +  W  E  ++ +   I
Sbjct: 75  VKLQIWDTAGQER-FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI 133

Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
            +L+G K D       + +     +A  +++A       +SA  + NV K+F  +  +L 
Sbjct: 134 TVLVGNKIDL-----AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

Query: 266 N 266
           +
Sbjct: 189 S 189

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 41/207 (19%), Positives = 88/207 (42%), Gaps = 17/207 (8%)

Query: 63  TRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVG 122
           +      SS      +        + +  YD        K+ L+GD  +GK+  ++++  
Sbjct: 4   SHHHHHHSSGENLYFQGRP---MSSMNPEYDY-----LFKLLLIGDSGVGKSCLLLRFAD 55

Query: 123 NE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFD 180
           +   E  +   G++   +T+ + G  I   IWD  G  R F  +  +  + A  I+ ++D
Sbjct: 56  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIIVVYD 114

Query: 181 LTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK 239
           +T + + N++  W  E  ++ ++    +L+G K D         +    T A+ +A ++ 
Sbjct: 115 VTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-----TTKKVVDYTTAKEFADSLG 169

Query: 240 ATLFFSSATHNINVNKIFKFIMAKLFN 266
                +SA +  NV + F  + A++  
Sbjct: 170 IPFLETSAKNATNVEQSFMTMAAEIKK 196

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           SSG     D + +KI L+GD  +GK+  +V++V ++     +   G++   KT+ + G +
Sbjct: 10  SSGNGKSYDSI-MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 205
           +   +WD  G  R F  +  A  + A+ I+ ++D+T   T  +I  W+    +  N  A 
Sbjct: 69  VKLQLWDTAGQER-FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ 127

Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
            +L+G K D   R+        A Q  A AK +      SSA ++ NVN+IF  +   + 
Sbjct: 128 LLLVGNKSDMETRVVT------ADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181

Query: 266 N 266
            
Sbjct: 182 E 182

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 10/180 (5%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S+    +   +  K  ++GD  +GK+  + ++   +         G+    + + V G +
Sbjct: 5   SATAPYNYSYI-FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 205
           I   IWD  G  R F  V  +  + A   L ++D+T R T N +  W ++AR   N   +
Sbjct: 64  IKLQIWDTAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 122

Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
            ILIG K D         +     +A+ +A+        +SA    NV   F     K++
Sbjct: 123 IILIGNKADL-----EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 9/168 (5%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  R
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86

Query: 161 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
            +  +  A  + AV  L +FDLT   T   +  W  E       T + +L+G K D    
Sbjct: 87  -YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL--- 142

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
                +     +AR +A+        +SA  + NV   F+ ++ ++F 
Sbjct: 143 --SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 21/188 (11%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           SS          LK+ +LGD  +GKTS + +YV ++  ++     G + + K + V G +
Sbjct: 2   SSRKKNI-----LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK 56

Query: 148 IA-FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 205
           +A   +WD  G  R F  + +A  + A   + ++D+T+  +  +I  W  E         
Sbjct: 57  VATMQVWDTAGQER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115

Query: 206 P-----ILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIFK 258
           P     +++G K D       + +  ++   A+  AK++     F +SA + INV+  F+
Sbjct: 116 PETFPFVILGNKIDA-----EESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170

Query: 259 FIMAKLFN 266
            I      
Sbjct: 171 EIARSALQ 178

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 7/180 (3%)

Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARI 148
           S  D  + L   K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   +
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPI 207
              +WD  G  R    +P   +D+   + ++D+T+  + +    W  + R       I +
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM 123

Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
           L+G K D       D +     +    AK +      +SA    NV ++F+ + A L  +
Sbjct: 124 LVGNKTDL-----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  + ++  +      +   G++   +T+ + G RI   IWD  G  
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R F  +  A  + A+ I+ ++D+T+  + ++I  W     +  +     +++G K D   
Sbjct: 69  R-FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV-- 125

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
               D +     +    A         +SA  NINV   F  +   +  
Sbjct: 126 ---NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 73.0 bits (180), Expect = 7e-16
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 16/175 (9%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++GD  +GKT    ++      +R+    G++   + + + G RI   +WD  G  
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 160 RSFDHVPIAC---KDAVAILFMFDLTSRCTLNSIVGWYSEARK--WNQTAIPILIGTKFD 214
           R F    +     ++  A++F++D+T+  + +S+  W  E ++         IL+G K D
Sbjct: 81  R-F-RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138

Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSA---THNINVNKIFKFIMAKLFN 266
                           A+ +A      LF +SA     N +V  IF  +  KL +
Sbjct: 139 L-----RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 73.0 bits (180), Expect = 8e-16
 Identities = 37/168 (22%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  R
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
            F  +  +  + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D    
Sbjct: 78  -FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL--- 133

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
                +    T A+ +A ++      +SA +  NV + F  + A++  
Sbjct: 134 --TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++G+  +GKTSF+ +Y  +      +   G++   KT+     RI   IWD  G  
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R +  +  A  + A+  + M+D+T+  + N++  W ++ + +    A  +L+G K D   
Sbjct: 69  R-YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-- 125

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
               D +   + + R  A  +    F +SA  NINV + F+ ++  +  
Sbjct: 126 ---EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 73.6 bits (181), Expect = 9e-16
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S  Y  D DL+  KI L+GD  +GK++ + ++  NE    S    G+    +TL ++G R
Sbjct: 3   SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61

Query: 148 IAFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 205
           I   IWD  G  R +  +  A  + AV  L ++D++   +  +   W SE R+  +    
Sbjct: 62  IKAQIWDTAGQER-YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA 120

Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
             LIG K D        L+     +++ +A+  +     +SA ++ NV+K F+ ++  ++
Sbjct: 121 VGLIGNKSDL-----AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175

Query: 266 N 266
            
Sbjct: 176 Q 176

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 7/168 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ LLGD   GK+S V+++V ++  E      G    ++TL V  A + F IWD  G  R
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 219
                P+  + A A + +FD+T++ +      W  E +   N   +  L G K D     
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL---- 129

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
             D +   A  A+ YA+        +SA    NV +IF  I  +L  +
Sbjct: 130 -LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           S L  LK+ LLGD  +GK+S + ++V +          G + + KT+  Q     F IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKF 213
             G  R     P+  + + A + ++D+T   T +++  W  E R+    + +  + G K 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           D       D++  +   A+ YA ++ A    +SA + IN+N++F  I  ++
Sbjct: 122 DL-----TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GK+  ++++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R F  +  +  + +  I+ ++D+T + + N +  W  E  ++   T + +L+G K D   
Sbjct: 69  R-FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-- 125

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
               D +      A+ +A A K     +SA  + NV   F  +  ++  
Sbjct: 126 ---KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
           S          SD +  K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V
Sbjct: 11  SSGLVPRGSIWSDFL-FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV 69

Query: 144 QGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-N 201
            G  +   IWD  G  R F  V  +  + A   L ++D+TSR T NS+  W ++AR   +
Sbjct: 70  GGKTVKLQIWDTAGQER-FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS 128

Query: 202 QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
              + IL G K D    L P+ + T   +A  +A+  +     +SA    NV + F    
Sbjct: 129 PNIVVILCGNKKD----LDPEREVTFL-EASRFAQENELMFLETSALTGENVEEAFLKCA 183

Query: 262 AKLFN 266
             + N
Sbjct: 184 RTILN 188

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD--- 214
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D   
Sbjct: 65  D-YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 215 ---DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 257
                 +L       I   Q  A AK + A  +   SA     +  +F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 10/184 (5%)

Query: 86  RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQ 144
              SSG       +  K  ++GD  +GK+  ++++     Q       G+    + + + 
Sbjct: 8   HHHSSGLVPRGSYL-FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID 66

Query: 145 GARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQ 202
           G +I   IWD  G    F  +  +  + A   L ++D+T R T N +  W  +AR+  + 
Sbjct: 67  GKQIKLQIWDTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS 125

Query: 203 TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMA 262
             + +LIG K D         +     +  A+A+        +SA    NV + F     
Sbjct: 126 NMVIMLIGNKSDL-----ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180

Query: 263 KLFN 266
           +++ 
Sbjct: 181 EIYR 184

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           K+ L+GD  +GKT  +V++          +   G++  NK L V G ++   +WD  G  
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R F  V  A  +DA A+L ++D+T++ + ++I  W +E  ++       +L+G K D   
Sbjct: 72  R-FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS-- 128

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
                 +          AK        +SA   +NV+  F  I  +L  
Sbjct: 129 ---AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 71.0 bits (175), Expect = 3e-15
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 22/186 (11%)

Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARI 148
           +G          K+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +
Sbjct: 2   AGKS-----SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV 56

Query: 149 AFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP- 206
              IWD  G  R F  +     + +   L  F +    +  ++  W  E   +     P 
Sbjct: 57  TMQIWDTAGQER-FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115

Query: 207 ----ILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIFKFI 260
               +++G K D   R        ++T +A+A+ +      +F +SA    NV   F+  
Sbjct: 116 SFPFVILGNKIDISER-------QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

Query: 261 MAKLFN 266
           + ++  
Sbjct: 169 VRRVLA 174

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 70.7 bits (174), Expect = 5e-15
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
           R F  V  +  + A   L ++D+TSR T N++  W ++AR   +Q  + IL G K D   
Sbjct: 71  R-FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL-- 127

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
                 +     +A  +A+  +     +SA    NV + F     K+ N
Sbjct: 128 ---DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 70.3 bits (173), Expect = 6e-15
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 13/175 (7%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGD 158
           LKI +LGD   GKTS    +      ++  Q  GL+   + + + G   +   IWD+GG 
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 159 SRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP----ILIGTKF 213
           +     +       A  +L ++D+T+  +  ++  WY+  +K ++ +       L+G K 
Sbjct: 67  TI-GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
           D        ++     +   + +    +  F SA    +V   F+ + A++  + 
Sbjct: 126 DL-----EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 70.3 bits (173), Expect = 6e-15
 Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 29/181 (16%)

Query: 89  SSGYDTDSDLVS-LKISLLGDCQIGKTSFVVKYVGNE-------QERSLQMAGLNLINKT 140
           SSG +        LK+ ++G+   GK++ V +Y+          +             K 
Sbjct: 8   SSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF--------KKE 59

Query: 141 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE-ARK 199
           ++V G      I D GG                A++F+F L    +  ++  ++      
Sbjct: 60  IVVDGQSYLLLIRDEGGPPE-LQF----AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF 114

Query: 200 WNQTAIP-ILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKI 256
            N + +P +L+GT+      +       I   +AR  +  +K   ++ + AT+ +NV ++
Sbjct: 115 RNASEVPMVLVGTQDA----ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170

Query: 257 F 257
           F
Sbjct: 171 F 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 70.9 bits (174), Expect = 7e-15
 Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 14/201 (6%)

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE 126
               S   D    G   L     +G +    + S+K+ L+GD   GKTS ++ +      
Sbjct: 4   HHHHSSGVDL---GTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFP 60

Query: 127 RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRC 185
            S            L V+G  +   IWD  G    +D + P+   DA  +L  FD+TS  
Sbjct: 61  ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD-YDRLRPLFYPDASVLLLCFDVTSPN 119

Query: 186 TLNSIVG-WYSEARKWNQTAIPILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKA 237
           + ++I   WY E   + +    I++G K D         +L  +    +   + +  A++
Sbjct: 120 SFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS 179

Query: 238 MKATLFF-SSATHNINVNKIF 257
           + A  +   SA  + NV+ +F
Sbjct: 180 VGAVAYLECSARLHDNVHAVF 200

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 20/201 (9%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           +S          LK+ +LGD  +GKTS + +YV  +   +     G + + K +MV    
Sbjct: 2   TSRKKVL-----LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 206
           +   IWD  G  R F  + +A  + A   + +FD+T+  T  ++  W  E         P
Sbjct: 57  VTMQIWDTAGQER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP 115

Query: 207 -----ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFI 260
                +++G K D   R           +A+A+  +     +F +SA   INV + F+ I
Sbjct: 116 ENFPFVVLGNKIDLENRQVAT------KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

Query: 261 MAKLFNLPWTVKRNLTIGEPI 281
                     V+      EPI
Sbjct: 170 ARNALKQETEVELYNEFPEPI 190

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 72.7 bits (178), Expect = 1e-14
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 17/182 (9%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--------VQGARIAFS 151
           +K+ L+GD   GKTS + + +G     +  Q  GLN++ K            +     F 
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGT 211
            WD GG              +   + + D  +    +    W     K+   +  I++  
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHY---WLRHIEKYGGKSPVIVVMN 158

Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
           K D+      + +     +      A++      S  +   V  I K + + + +     
Sbjct: 159 KIDENPSYNIEQK-----KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIY 213

Query: 272 KR 273
             
Sbjct: 214 GT 215

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 28/185 (15%), Positives = 73/185 (39%), Gaps = 26/185 (14%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMA--GLNLINKTLMVQGAR---IAFSIWD 154
           +K+ ++G+   GKT+ + + +  +  +  +Q A  G+++ +  + ++  R   +  ++WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 155 VGGDSR------SFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTAIPI 207
             G          F             L ++DL+     ++++  W    +    ++  I
Sbjct: 63  FAGREEFYSTHPHF------MTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI 116

Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAM-----KATLFFSSATHNINVNKIFKFIMA 262
           L+GT  D  V      +  ++   +           +   F ++   +  + K+ K I+ 
Sbjct: 117 LVGTHLD--VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIIN 174

Query: 263 KLFNL 267
           +  N 
Sbjct: 175 ESLNF 179

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 68.2 bits (167), Expect = 6e-14
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 13/170 (7%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           +  K+ ++GD   GKT  ++ +  +E  E  +     N +   + V G ++  ++WD  G
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 82

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 214
               +D + P++  D   IL  F + S  +L +I   W  E + +      IL+  K D 
Sbjct: 83  QED-YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141

Query: 215 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 257
                    L    Q  + T   RA A  ++A  +   SA     V ++F
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 13/180 (7%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S   +      ++K  ++GD  +GKT  ++ Y  N      +     N     +MV G  
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKP 77

Query: 148 IAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAI 205
           +   +WD  G    +D + P++       L  F L S  +  ++   WY E R       
Sbjct: 78  VNLGLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP 136

Query: 206 PILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 257
            IL+GTK D         +L       I   Q  A AK + A  +   SA     +  +F
Sbjct: 137 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 13/170 (7%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           +  K+ ++GD   GKT  ++ +  ++  E  +     N I   + V G ++  ++WD  G
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAG 82

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 214
               +D + P++  D   IL  F + S  +L +I   W  E + +      IL+G K D 
Sbjct: 83  QED-YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141

Query: 215 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFFS-SATHNINVNKIF 257
                    L    Q  + + + R  A  + A  +   SA     V ++F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
             G    ++   +K  L+GD  +GKTS VV Y  N      +  A  N  +  + V G  
Sbjct: 9   GRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRP 67

Query: 148 IAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAI 205
           +   + D  G    FD + P+   +    L  F + S  +  N    W  E R     A 
Sbjct: 68  VRLQLCDTAGQD-EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP 126

Query: 206 PILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 257
            IL+GT+ D        + L    +  +    A+  A+ +KA  +   SA    N+ ++F
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 14/171 (8%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  KI ++GD Q GKT+ +  +  +   E  +     N    +  +   RI  S+WD  G
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSG 85

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 214
               +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D 
Sbjct: 86  SPY-YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144

Query: 215 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFF--SSATHNINVNKIF 257
                  V L    Q  ++  Q    AK + A  +   S+     +V  IF
Sbjct: 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 20/180 (11%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQG----------ARIA 149
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++              ++ 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 150 FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK--WNQTAIP 206
             +WD  G  R F  +  A  +DA+  L MFDLTS+ +  ++  W S+ +   + +    
Sbjct: 86  LQLWDTAGQER-FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144

Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           +LIG K D      PD +     QAR  A       F +SA    NV K  + ++  +  
Sbjct: 145 VLIGNKADL-----PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 20/179 (11%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQ----------GARIAF 150
           K   LGD  +GKTS + +Y   +   + +   G++   K ++ +          G RI  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 151 SIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK--WNQTAIPI 207
            +WD  G  R F  +  A  +DA+  L +FDLT+  +  ++  W S+ +   +++    +
Sbjct: 73  QLWDTAGLER-FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
           L G K D       D +     +AR  A+      F +SA +  N++   + ++  +  
Sbjct: 132 LCGNKSDL-----EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 11/171 (6%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           S    +K   +GD  +GKT  ++ Y  N      +     N     ++V GA +   +WD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWD 62

Query: 155 VGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTK 212
             G    ++ + P++ + A   +  F L S+ +  ++   W  E + +      +L+GTK
Sbjct: 63  TAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121

Query: 213 FD----DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 257
            D        +       I T Q     K + A  +   S+    NV  +F
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 14/171 (8%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  KI ++GD Q GKT+ +  +  +   E  +     N    +  +   RI  S+WD  G
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSG 64

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 214
               +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D 
Sbjct: 65  SPY-YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123

Query: 215 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFF--SSATHNINVNKIF 257
                  V L    Q  ++  Q    AK + A  +   S+     +V  IF
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 9/165 (5%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
            +K   +GD  +GKT  ++ Y  N+     +     N     + V G  +   +WD  G 
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAG- 66

Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD-- 214
              +  + P++ + A   +  F L S+ +  +++  W  E R++      +L+GTK D  
Sbjct: 67  QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126

Query: 215 DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 257
           D      D    I + Q     K + A  +   S+    NV  +F
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 28/205 (13%), Positives = 70/205 (34%), Gaps = 29/205 (14%)

Query: 80  GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV--GNE-QERSLQMAGLNL 136
           G   + +      D  + L   K++++G+  +GK++ +  +   G++  +     +G+ +
Sbjct: 1   GAASMVKKEVKPIDITATLR-CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEV 59

Query: 137 INKTLMVQGARIAFSIWDVGGDS------RSFDHVPIAC---KDAVAILFMFDLTSRCTL 187
           +   + +    ++  ++    D+      +                  + +FD++S  + 
Sbjct: 60  VVAPVTIPDTTVSVELFL--LDTAGSDLYKE-----QISQYWNGVYYAILVFDVSSMESF 112

Query: 188 NSIVGWYSEARKWNQTAIP----ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 243
            S   W+   +            +L+  K D    LPP         A+ +A       F
Sbjct: 113 ESCKAWFELLKSARPDRERPLRAVLVANKTD----LPPQRHQVRLDMAQDWATTNTLDFF 168

Query: 244 FSSA-THNINVNKIFKFIMAKLFNL 267
             SA     + +  F  I    +  
Sbjct: 169 DVSANPPGKDADAPFLSIATTFYRN 193

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 13/170 (7%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           + LK  ++GD  +GKT  ++ Y  +   E  +     +    ++ V G +    ++D  G
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAG 75

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 214
               +D + P++       L  F + +  +  ++   W  E +++      +LIGT+ D 
Sbjct: 76  -QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134

Query: 215 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFFS-SATHNINVNKIF 257
                   RL    +  I   Q +  AK + A  +   SA     +  +F
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 45/204 (22%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQG-------------- 145
            K  LLG+  +GK+S V++   +   E +    G +     + +                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 146 -----------------------ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 182
                                    I F IWD  G  R    VP+  + A   + +FD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 183 SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 242
           +  TL+    W ++ +  +   I IL+  K D               + + YA+      
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYII-ILVANKIDKNKFQVD------ILEVQKYAQDNNLLF 180

Query: 243 FFSSATHNINVNKIFKFIMAKLFN 266
             +SA    N+  IF  +  +++ 
Sbjct: 181 IQTSAKTGTNIKNIFYMLAEEIYK 204

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 9/160 (5%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+G+  +GK++    + G +           +   + +MV    +   ++D+     
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDDFV 217
           +   +   C +   A L +F +T R + + +       R       +P IL+G K D   
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD--- 120

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L    + ++  + R  A  +      +SA  + N  ++F
Sbjct: 121 -LARSREVSLE-EGRHLAGTLSCKHIETSAALHHNTRELF 158

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGN--EQ-----ERSLQMAGLNLINKTLMVQGARI 148
             +  L++ +LGD + GK+S + +++    +                   K ++V G   
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY--------KKEMLVDGQTH 54

Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE---ARKWNQTAI 205
              I +  G              A A++F+F L    +  ++   + +    R   +  +
Sbjct: 55  LVLIREEAGAPD--AK---FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGL 109

Query: 206 PILI---GTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSS-ATHNINVNKIF 257
            + +     +              +   +ARA    MK   ++ + AT+ +NV+++F
Sbjct: 110 ALALVGTQDRISA------SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVF 160

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 31/177 (17%), Positives = 68/177 (38%), Gaps = 10/177 (5%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
           S   +  +    D +  K+ L+G+  +GK++    + G +           +   + +MV
Sbjct: 9   SGRENLYFQGQKDGI-FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV 67

Query: 144 QGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
               +   ++D+     +   +   C +   A L +F +T R + + +       R    
Sbjct: 68  DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 127

Query: 203 TA-IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
              +P IL+G K D    L    + ++  + R  A  +      +SA  + N  ++F
Sbjct: 128 HHDLPVILVGNKSD----LARSREVSLE-EGRHLAGTLSCKHIETSAALHHNTRELF 179

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 56.0 bits (136), Expect = 8e-10
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 9/160 (5%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG-DSR 160
           ++ LLGD  +GKTS    + G ++    +  G ++  +TL V G      + D    +  
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKFDDFV 217
                  +C +   A + ++ +  R +  S      + R+ +Q   +PI L+G K D   
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD--- 122

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            L    + ++  + RA A         +SAT   NV ++F
Sbjct: 123 -LARCREVSVE-EGRACAVVFDCKFIETSATLQHNVAELF 160

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 25/167 (14%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ ++G   +GK++  ++++ +E        +  S +        K +++ G  +   I 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--------KKVVLDGEEVQIDIL 67

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G    +  +     +     L +F +T   +  +   +  +  R      +P  L+G
Sbjct: 68  DTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126

Query: 211 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            K D    L    Q ++  +A+  A+        +SA    NV+K+F
Sbjct: 127 NKSD----LEDKRQVSVE-EAKNRAEQWNVNYVETSAKTRANVDKVF 168

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 10/159 (6%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ LLG   +GK++    + G E     + AG +  +++++V G   +  ++D+      
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDG- 61

Query: 162 FDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKFDDFVR 218
              +P  C     A + ++ +T + +         + R+  QT  +PI L+G K D    
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD---- 117

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           L    + ++  + RA A         +SA  + NV  +F
Sbjct: 118 LVRSREVSVD-EGRACAVVFDCKFIETSAALHHNVQALF 155

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 28/168 (16%)

Query: 102 KISLLGDCQIGKTSFVVKYVGN---EQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ ++G   +GK++  ++ + N   ++     E S +        K +++ G      I 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR--------KQVVIDGETCLLDIL 57

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G    +  +     +     L +F + +  +   I  +  +  R  +   +P+ L+G
Sbjct: 58  DTAGQEE-YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116

Query: 211 TKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIF 257
            K D    LP     T+ T QA+  A++       +SA     V+  F
Sbjct: 117 NKCD----LP---SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 25/167 (14%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ +LG   +GKTS   ++V  E         E +          K + +        + 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS--------KIVTLGKDEFHLHLV 77

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G    +  +P +        + ++ +TS  +   I   Y +      +T +P+ L+G
Sbjct: 78  DTAGQDE-YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136

Query: 211 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            K D    L P+ +     + +  A++  AT   SSA  N     IF
Sbjct: 137 NKAD----LSPEREVQAV-EGKKLAESWGATFMESSARENQLTQGIF 178

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 30/183 (16%)

Query: 89  SSG--YDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLIN 138
           SSG        +   K+ ++G   +GK++  ++ + N          E S +        
Sbjct: 8   SSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-------- 59

Query: 139 KTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE- 196
           K +++ G      I D  G    +  +     +     L +F + +  +   I  +  + 
Sbjct: 60  KQVVIDGETCLLDILDTAGQEE-YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI 118

Query: 197 ARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVN 254
            R  +   +P+ L+G K D    LP     T+ T QA   AK+       +SA     V 
Sbjct: 119 KRVKDSDDVPMVLVGNKCD----LP---TRTVDTKQAHELAKSYGIPFIETSAKTRQGVE 171

Query: 255 KIF 257
             F
Sbjct: 172 DAF 174

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 25/167 (14%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ ++G   +GK++  ++++ +E        +  S +        K +++ G  +   I 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--------KKVVLDGEEVQIDIL 71

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G    +  +     +     L +F +T   +  +   +  +  R      +P  L+G
Sbjct: 72  DTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

Query: 211 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            K D    L    Q ++  +A+  A+        +SA    NV+K+F
Sbjct: 131 NKSD----LEDKRQVSVE-EAKNRAEQWNVNYVETSAKTRANVDKVF 172

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 27/168 (16%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           KI++LG   +GK+S  +++V  +         E +          K + V G      + 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT--------KLITVNGQEYHLQLV 59

Query: 154 DVGG--DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LI 209
           D  G  +   F        D    + ++ +TS  +   I   + +      +  IPI L+
Sbjct: 60  DTAGQDEYSIFPQTYS--IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLV 117

Query: 210 GTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           G K D    L  +   +   + +A A++  A    SSA  N     +F
Sbjct: 118 GNKKD----LHMERVISYE-EGKALAESWNAAFLESSAKENQTAVDVF 160

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 31/171 (18%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
            +++LG    GK++  VK++            E +              V    +   + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS--------SEETVDHQPVHLRVM 74

Query: 154 DVGG--DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR---KWNQTAIPI- 207
           D       R+ +        A A L ++ + SR + +S   +        K  Q +IP  
Sbjct: 75  DTADLDTPRNCER---YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL 131

Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNINVNKIF 257
           L+G K D    +    Q T A +  A A       F  SA     +V  +F
Sbjct: 132 LLGNKLD----MAQYRQVTKA-EGVALAGRFGCLFFEVSACLDFEHVQHVF 177

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 26/172 (15%)

Query: 102 KISLLGDCQIGKTSFVVKYVGN---EQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 153
           ++++ G   +GK+S V+++V     E      E + +        + +    +     I 
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR--------QVISCDKSICTLQIT 56

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEAR--KWNQTAIPI-LI 209
           D  G  + F  +         A + ++ +TSR +L  +   Y +    K +  +IPI L+
Sbjct: 57  DTTGSHQ-FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 115

Query: 210 GTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
           G K D      P  +   + +A A A+  K     +SA  N NV ++F+ ++
Sbjct: 116 GNKCD----ESPSREVQSS-EAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 29/169 (17%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+++ G   +GK++ VV+++            E + +            +    ++  I 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR--------HQATIDDEVVSMEIL 81

Query: 154 DVGG--DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LI 209
           D  G  D+   +      +     + ++D+T R +   ++   +          + + L+
Sbjct: 82  DTAGQEDTIQREG---HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138

Query: 210 GTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNINVNKIF 257
           G K D    L    Q +   +    A  +    +  SA T   N+ +IF
Sbjct: 139 GNKAD----LDHSRQVSTE-EGEKLATELACAFYECSACTGEGNITEIF 182

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 16/198 (8%)

Query: 68  SESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQ-- 125
              S   D     L   S +  S   ++S     ++ L+G+  +GK++    + G     
Sbjct: 5   HHHSSGVDLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSM 64

Query: 126 ERSLQMAGLNLINKTLMVQGARIAFS---IWDVGGDSRSFDHVPIAC-KDAVAILFMFDL 181
           +   ++ G +   +TLMV G         +W+  G++     +   C +   A L ++ +
Sbjct: 65  DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENE---WLHDHCMQVGDAYLIVYSI 121

Query: 182 TSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMK 239
           T R +         + R+  QT  IPI L+G K D    L    + +++ + RA A    
Sbjct: 122 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSD----LVRCREVSVS-EGRACAVVFD 176

Query: 240 ATLFFSSATHNINVNKIF 257
                +SA    NV ++F
Sbjct: 177 CKFIETSAAVQHNVKELF 194

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ ++G   +GK++  ++++ +E        +  S +        K +++ G  +   I 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--------KKVVLDGEEVQIDIL 57

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G    +  +     +     L +F +T   +  +   +  +  R      +P  L+G
Sbjct: 58  DTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

Query: 211 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            K D    L    Q ++  +A+  A         +SA    NV+K+F
Sbjct: 117 NKSD----LEDKRQVSVE-EAKNRADQWNVNYVETSAKTRANVDKVF 158

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 29/173 (16%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           ++ + G   +GK+S V+++V            E + +        + +    +     I 
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR--------QVISCDKSVCTLQIT 61

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEAR--KWNQTAIPI-LI 209
           D  G  + F  +         A + +F +TS+ +L  +   Y      K +   IP+ L+
Sbjct: 62  DTTGSHQ-FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120

Query: 210 GTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
           G K D+  R        + T +A+A A+  K     +SA  N NV ++F+ ++
Sbjct: 121 GNKCDETQR-------EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 28/169 (16%)

Query: 102 KISLLGDCQIGKTSFVVKYVGN---EQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ +LG   +GK++  V++V     E+     E S +        K + V   +    I 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--------KQVEVDCQQCMLEIL 56

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G  + F  +     K+      ++ +T++ T N +     +  R  +   +P+ L+G
Sbjct: 57  DTAGTEQ-FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

Query: 211 TKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 257
            K D       + +  +   Q +  A+      F  SSA   INVN+IF
Sbjct: 116 NKCDL------EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 141 LMVQGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEAR 198
           +MV G  +   +WD  G    +D + P++       L  F L S  + + +   WY E R
Sbjct: 196 VMVDGKPVNLGLWDTAG-LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254

Query: 199 KWNQTAIPILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHN 250
                   IL+GTK D         +L       I   Q  A AK + A  +   SA   
Sbjct: 255 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314

Query: 251 INVNKIF 257
             +  +F
Sbjct: 315 RGLKTVF 321

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 25/167 (14%)

Query: 102 KISLLGDCQIGKTSFVVKYVGN---EQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ +LG   +GK++  V++V     E+     E   +        K + V  +     I 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR--------KEIEVDSSPSVLEIL 56

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G  + F  +     K+    + ++ L ++ +   I     +  R      +P+ L+G
Sbjct: 57  DTAGTEQ-FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115

Query: 211 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            K D    L  + + + + + RA A+        +SA     V+++F
Sbjct: 116 NKVD----LESEREVSSS-EGRALAEEWGCPFMETSAKSKTMVDELF 157

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 26/184 (14%)

Query: 86  RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGN---EQ-----ERSLQMAGLNLI 137
            + ++      +L + K+ ++GD  +GK++  +++      +      E S         
Sbjct: 4   GSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL------- 56

Query: 138 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 196
            K   +        + D  G    F  +     +     L ++ +T + +   +  ++  
Sbjct: 57  -KHTEIDNQWAILDVLDTAGQEE-FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQL 114

Query: 197 -ARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNINV 253
             R  ++ + P+ L+  K D    L    + T   Q +  A         +SA    +NV
Sbjct: 115 ILRVKDRESFPMILVANKVD----LMHLRKVTRD-QGKEMATKYNIPYIETSAKDPPLNV 169

Query: 254 NKIF 257
           +K F
Sbjct: 170 DKTF 173

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 28/168 (16%)

Query: 102 KISLLGDCQIGKTSFVVKYVGN---EQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ ++G   +GK++  ++ + N   ++     E S +        K +++ G      I 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR--------KQVVIDGETCLLDIL 56

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G    +  +     +     L +F + +  +   I  +  +  R  +   +P+ L+G
Sbjct: 57  DTAGQEE-YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 211 TKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIF 257
            K D    L      T+ + QA+  A++       +SA     V   F
Sbjct: 116 NKSD----LA---ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 50.2 bits (121), Expect = 8e-08
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           K+ ++G   +GK++  ++++ +          E S          K   V G      I 
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT--------KICSVDGIPARLDIL 62

Query: 154 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 210
           D  G    F  +     +     L +F +  R + N +   +++  R  ++   P+ L+G
Sbjct: 63  DTAGQEE-FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

Query: 211 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
            K D    L    Q   + +A A+  +     F +SA   +NV++ F
Sbjct: 122 NKAD----LESQRQVPRS-EASAFGASHHVAYFEASAKLRLNVDEAF 163

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQG---ARIAFSIWDVG 156
           ++ L+G+  +GK++    + G     +   ++ G +   +TLMV G     I   +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 157 GDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKF 213
           G++     +   C +   A L ++ +T R +         + R+  QT  IPI L+G K 
Sbjct: 68  GENE---WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
           D         +    ++ RA A         +SA    NV ++F
Sbjct: 125 DL-----VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 12/153 (7%)

Query: 111 IGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--VPIA 168
           + +T F+          +     +     T +    ++ +   D  G  + F+   +P  
Sbjct: 100 VEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDG 159

Query: 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKW-NQTAIPI-LIGTKFDDFVRLPPDLQ 224
                  L   D++       +  + + S       +T  PI ++ TK D       +  
Sbjct: 160 KLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCD----EGVERY 215

Query: 225 WTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
              A    A +K     +  +SA  N+NV+  F
Sbjct: 216 IRDA-HTFALSK-KNLQVVETSARSNVNVDLAF 246

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 28/191 (14%), Positives = 66/191 (34%), Gaps = 18/191 (9%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+G    GK+S       N     + ++     +  + +     +  ++WD GG   
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64

Query: 161 SFDH-----VPIACKDAVAILFMFDLTSRCTLNSIVGWYS---EARKWNQTAIPILIGTK 212
             ++          +    ++ +FD+ S   L  I  +     + RK++  A   ++  K
Sbjct: 65  FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124

Query: 213 FDDFVRLPPDLQWTI------ATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
            D    +  D +  +           +        + F ++  + ++ K +  I+  L  
Sbjct: 125 MD---LVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIP 181

Query: 267 LPWTVKRNLTI 277
                + NL  
Sbjct: 182 NMSNHQSNLKK 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.98
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.98
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.98
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.98
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.98
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.98
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.98
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.98
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.98
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.98
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.92
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.91
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.91
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.91
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.91
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.9
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.88
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.88
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.88
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.85
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.85
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.83
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.83
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.83
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.83
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.82
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.82
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.82
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.82
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.81
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.81
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.8
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.8
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.8
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.8
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.8
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.79
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.79
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.78
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.78
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.78
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.78
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.78
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.77
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.77
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.76
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.76
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.76
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.76
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.74
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.74
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.73
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.72
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.72
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.71
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.71
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.69
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.68
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.68
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.67
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.66
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.64
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.62
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.62
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.61
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.61
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.58
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.58
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.57
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.57
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.56
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.55
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.54
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.5
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.4
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.39
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.39
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.33
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.31
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.28
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.22
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.22
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.14
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.11
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.08
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.07
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.01
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.0
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.97
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.85
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.85
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.46
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.42
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.39
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.34
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.32
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.31
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.29
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.22
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.19
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.05
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.91
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.77
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.76
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.68
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.66
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.58
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.54
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.27
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.23
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.89
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.75
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.55
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.5
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.49
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.16
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.07
2xxa_A	433	Signal recognition particle protein; protein trans	95.94
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.9
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.87
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.85
3end_A	307	Light-independent protochlorophyllide reductase ir	95.84
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.84
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.84
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.82
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.78
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.74
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.73
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.67
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.61
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.61
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.49
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.47
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.42
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.34
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.31
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.3
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.28
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.26
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.25
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.24
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.19
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.18
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.18
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.18
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.16
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.14
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.13
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.12
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.11
1g6h_A	257	High-affinity branched-chain amino acid transport	95.1
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.09
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.08
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.07
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.06
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.06
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.05
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.03
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.01
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.99
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.98
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.97
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.95
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.93
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.91
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.91
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.9
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.9
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.88
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.88
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.87
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.86
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.86
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.86
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.86
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.83
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.81
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.8
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.8
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	94.79
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.78
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.75
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.74
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.73
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.71
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.71
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.65
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.65
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.61
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.61
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.61
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.6
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.57
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.49
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.49
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.47
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.42
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.4
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.38
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.38
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.37
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.34
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.33
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	94.31
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.25
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.23
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.23
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.19
1via_A	175	Shikimate kinase; structural genomics, transferase	94.17
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.17
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.17
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.17
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.17
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.15
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.14
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.11
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.06
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.05
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.03
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.02
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.01
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.0
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.98
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.97
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.94
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.91
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.85
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.83
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.83
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.82
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.8
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	93.8
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.78
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.74
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.73
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	93.72
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.71
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.69
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.67
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.67
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.66
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.66
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	93.65
3bos_A	242	Putative DNA replication factor; P-loop containing	93.6
2cvh_A	220	DNA repair and recombination protein RADB; filamen	93.59
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	93.56
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.52
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.52
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	93.52
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.52
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.51
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	93.48
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.48
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.45
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.44
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.44
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.43
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.4
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.38
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.33
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.32
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.32
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.3
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	93.28
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.27
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.26
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.25
2og2_A	359	Putative signal recognition particle receptor; nuc	93.24
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.2
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.18
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	93.16
2chg_A	226	Replication factor C small subunit; DNA-binding pr	93.15
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	93.14
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.14
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.12
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.11
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.1
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.09
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.07
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.07
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	93.06
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.97
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.89
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.88
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	92.83
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	92.76
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.75
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	92.68
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	92.62
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.59
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.53
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.52
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	92.48
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	92.44
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.42
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.4
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	92.23
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.22
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	92.17
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.1
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.1
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	92.02
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.01
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	91.94
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	91.92
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	91.91
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	91.89
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	91.87
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.81
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	91.77
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	91.74
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	91.7
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	91.69
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.65
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	91.61
1tue_A	212	Replication protein E1; helicase, replication, E1E	91.61
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	91.6
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	91.59
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	91.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.49
2fna_A	357	Conserved hypothetical protein; structural genomic	91.37
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	91.35
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	91.34
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	91.26
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	91.22
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	91.2
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	91.13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.1
3co5_A	143	Putative two-component system transcriptional RES	91.09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.05
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	91.04
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	91.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	90.93
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	90.86
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	90.85
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	90.81
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	90.79
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	90.78
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	90.7
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	90.55
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	90.55
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	90.52
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	90.48
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	90.42
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	90.4
2qgz_A	308	Helicase loader, putative primosome component; str	90.38
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	90.32
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	90.3
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.3
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	90.25
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	90.18
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	90.18
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	90.11
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	90.04
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	89.97
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	89.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	89.91
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	89.86
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	89.79
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	89.71
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	89.71
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	89.7
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	89.65
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	89.56
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	89.53
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	89.52
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	89.46
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	89.46
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	89.43
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.42

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.8e-39  Score=275.33  Aligned_cols=168  Identities=22%  Similarity=0.415  Sum_probs=139.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      +...+||+|||++|||||||+++|+.+.|. .+.+|+|.++..+.+.+++..+.++||||+|+++|..+++.|+++++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            345799999999999999999999999998 5567999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      ++|||+++++||+++..|+..+.......+| ||||||+||    . ..+.+..++++++|++++++|+||||++|.||+
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl----~-~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~  164 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL----A-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVK  164 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTC----G-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccch----H-hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHH
Confidence            9999999999999999999999887655555 799999996    2 223345889999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcc
Q 023316          255 KIFKFIMAKLFNLPW  269 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~  269 (284)
                      ++|+.|++.+.+...
T Consensus       165 e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          165 QLFRRVAAALPGMES  179 (216)
T ss_dssp             HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=232.35  Aligned_cols=164  Identities=26%  Similarity=0.397  Sum_probs=138.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|.++.+. ...+|++.++..+.+.+++..+.+.+|||+|+++|..++..+++.+|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            45799999999999999999999999987 55568899998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~  254 (284)
                      +|||++++++|+++..|+..+.......+| |||+||+||.    +. +.+..++++++++.+++ +++++||++|.||+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  181 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS----EL-REVSLAEAQSLAEHYDILCAIETSAKDSSNVE  181 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc----cc-cccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence            999999999999999999999888644445 7999999962    21 22346788899999999 99999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023316          255 KIFKFIMAKLFN  266 (284)
Q Consensus       255 ~lf~~l~~~i~~  266 (284)
                      ++|+++++.+..
T Consensus       182 ~l~~~l~~~i~~  193 (201)
T 2hup_A          182 EAFLRVATELIM  193 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.5e-33  Score=234.61  Aligned_cols=166  Identities=19%  Similarity=0.239  Sum_probs=138.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCC--CCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-CcccccccccCCcE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVA  174 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~~~~~~~~ad~  174 (284)
                      ...+||+|+|++|||||||+++|++...  ...++++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            4479999999999999999999997544  45667889898888899999999999999999987 56677888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023316          175 ILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  252 (284)
Q Consensus       175 iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~  252 (284)
                      +|+|||+++++||+.+..|+..+.+..  ...|.||||||+||.    +. +.+..++++.++..++++|++|||++|.|
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~----~~-r~v~~~e~~~~a~~~~~~~~e~SAk~g~~  189 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV----RC-REVSVSEGRACAVVFDCKFIETSAAVQHN  189 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG----GG-CCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh----cC-ceEeHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            999999999999999999998887642  244558999999962    11 22346678888999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCc
Q 023316          253 VNKIFKFIMAKLFNLP  268 (284)
Q Consensus       253 v~~lf~~l~~~i~~~~  268 (284)
                      |+++|+++++.+....
T Consensus       190 v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          190 VKELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999885443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=5.3e-33  Score=227.89  Aligned_cols=167  Identities=20%  Similarity=0.362  Sum_probs=119.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|.++.+. ...+|++.++....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            35799999999999999999999998887 55668899998888899999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++|+++..|+..+..+....+| ++|+||+|+.    +. +.+..++++.+++.++++++++||++|.|+++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN----DK-RQVSKERGEKLALDYGIKFMETSAKANINVEN  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC----SC-CCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC----cc-CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999887554445 7999999962    21 22346778899999999999999999999999


Q ss_pred             HHHHHHHHHhCCcc
Q 023316          256 IFKFIMAKLFNLPW  269 (284)
Q Consensus       256 lf~~l~~~i~~~~~  269 (284)
                      +|.++.+.+.....
T Consensus       161 l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          161 AFFTLARDIKAKMD  174 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998876543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.2e-32  Score=227.22  Aligned_cols=161  Identities=20%  Similarity=0.334  Sum_probs=136.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ...+||+|+|++|||||||+++|+++.+...+.+++.++ .+.+.+++..+.+++|||+|+++|.     +++++|++++
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~   91 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF   91 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence            457999999999999999999999999885444444444 4788899999999999999999877     8899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINVN  254 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~~v~  254 (284)
                      |||++++++|+++..|+..+.....  ..|.+|||||+||.   ......+..+++.++++.++ ++|+++||++|.||+
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS---AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB---TTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---cccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999988743  44557999999962   12223344788999999997 899999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 023316          255 KIFKFIMAKLFNL  267 (284)
Q Consensus       255 ~lf~~l~~~i~~~  267 (284)
                      ++|+++++.+.+.
T Consensus       169 ~lf~~l~~~i~~~  181 (184)
T 3ihw_A          169 RVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.1e-32  Score=224.69  Aligned_cols=168  Identities=22%  Similarity=0.357  Sum_probs=146.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC-eEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ...+||+++|++|||||||+++|.++.+. ...+|++.++..+.+.+++ ..+.+++|||+|++++..++..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            35799999999999999999999999887 4556888999888888876 678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC---CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWN---QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  251 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~---~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~  251 (284)
                      |+|||++++++|+++..|+..+..+.   ...|+ ++|+||+|+.    +. .....+++..+++.++++++++||++|.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE----HM-RTIKPEKHLRFCQENGFSSHFVSAKTGD  158 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG----GG-CSSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc----cc-cccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            99999999999999999999987753   24564 7999999962    11 2233677889999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCccc
Q 023316          252 NVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~~~~~  270 (284)
                      |++++|+++.+.+.+.++.
T Consensus       159 gi~~l~~~l~~~~~~~~~~  177 (178)
T 2hxs_A          159 SVFLCFQKVAAEILGIKLN  177 (178)
T ss_dssp             THHHHHHHHHHHHTTCCCC
T ss_pred             CHHHHHHHHHHHHHhhhhc
Confidence            9999999999999877653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4.4e-32  Score=224.91  Aligned_cols=168  Identities=19%  Similarity=0.341  Sum_probs=145.4

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+++|++|||||||+++|+++.+. ...+|++.++. ..+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            456899999999999999999999999988 44557776655 4677899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCH
Q 023316          176 LFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINV  253 (284)
Q Consensus       176 ilv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~~~~v  253 (284)
                      |+|||++++++|+++ ..|+..+.......|.|+|+||+|+.   .+....+..+++.++++.+++. ++++||++|.||
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR---KDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL  175 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC---CTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc---cCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence            999999999999997 78999998887666668999999973   2222334478899999999998 999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023316          254 NKIFKFIMAKLFNLP  268 (284)
Q Consensus       254 ~~lf~~l~~~i~~~~  268 (284)
                      +++|+++++.+...+
T Consensus       176 ~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          176 NEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999997664

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.8e-32  Score=225.68  Aligned_cols=165  Identities=21%  Similarity=0.365  Sum_probs=142.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++++. ...++++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            45899999999999999999999999987 45568898888888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++++++..|+..+.......+| ++|+||+|+.    + ...+..++++.+++.++++++++||++|.|+++
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE----S-RRDVKREEGEAFAREHGLIFMETSAKTACNVEE  173 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----G-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC----C-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999887654555 7999999962    1 122346778899999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|+++++.+.+.
T Consensus       174 l~~~l~~~i~~~  185 (191)
T 2a5j_A          174 AFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-32  Score=229.77  Aligned_cols=165  Identities=22%  Similarity=0.387  Sum_probs=146.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...+|++.++..+.+.+++..+.+++|||+|+++|..++..+++.+|++|
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            35799999999999999999999999988 56678999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++|+.+..|+..+.......+| |+|+||+|+.    + .+.+..++++.+++..+++++++||++|.||++
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA----E-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG----G-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----c-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999888655555 7999999962    1 122346778889999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|+++++.+...
T Consensus       179 l~~~l~~~i~~~  190 (201)
T 2ew1_A          179 LFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.3e-32  Score=220.72  Aligned_cols=167  Identities=23%  Similarity=0.409  Sum_probs=147.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999888 66678899999899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      +|||++++.+++.+..|+..+.......|.|+|+||+|+.    + ......+++..++...+++++++||++|.|++++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP----E-RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM  161 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG----G-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc----h-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            9999999999999999999998887766668999999962    2 1223467788999999999999999999999999


Q ss_pred             HHHHHHHHhCCcc
Q 023316          257 FKFIMAKLFNLPW  269 (284)
Q Consensus       257 f~~l~~~i~~~~~  269 (284)
                      |+++.+.+.....
T Consensus       162 ~~~l~~~~~~~~~  174 (181)
T 3tw8_B          162 FNCITELVLRAKK  174 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998876543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.4e-31  Score=221.03  Aligned_cols=164  Identities=24%  Similarity=0.457  Sum_probs=144.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            35799999999999999999999999987 55668888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++++.+..|+..+........| ++|+||+|+.    +. +....++++++++.++++++++||++|.|+++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  174 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE----DE-RVVPAEDGRRLADDLGFEFFEASAKENINVKQ  174 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            999999999999999999999888644444 7999999962    11 22336778899999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++++.+.+
T Consensus       175 l~~~l~~~i~~  185 (189)
T 2gf9_A          175 VFERLVDVICE  185 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.2e-32  Score=230.95  Aligned_cols=175  Identities=24%  Similarity=0.302  Sum_probs=142.1

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+|+|++|||||||+++|+++.+.. ..+|++.++ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            3457999999999999999999999999884 456777766 46677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHH-HHHHHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEc
Q 023316          176 LFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSS  246 (284)
Q Consensus       176 ilv~d~~~~~s~~~-~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~S  246 (284)
                      |+|||++++++|++ +..|+..+....+..|.||||||+||.....       ...+.+..+++..+++.+++ +|+++|
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  182 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS  182 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence            99999999999999 6899999999876666689999999631100       00123447889999999999 999999


Q ss_pred             CCCCcC-HHHHHHHHHHHHhCCccccc
Q 023316          247 ATHNIN-VNKIFKFIMAKLFNLPWTVK  272 (284)
Q Consensus       247 a~~~~~-v~~lf~~l~~~i~~~~~~~~  272 (284)
                      |++|.| |+++|+++++.+.......+
T Consensus       183 A~~g~g~v~~lf~~l~~~~~~~~~~~~  209 (214)
T 3q3j_B          183 AFTSEKSIHSIFRTASMLCLNKPSPLP  209 (214)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHC------
T ss_pred             cCCCcccHHHHHHHHHHHHhccCcCCC
Confidence            999998 99999999999987765444

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=6.4e-32  Score=219.86  Aligned_cols=164  Identities=23%  Similarity=0.383  Sum_probs=144.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|.++.+. ...++++.++..+.+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            45799999999999999999999999987 44568888888888899999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++.+++++..|+..+........| ++|+||+|+.    ++ .....++++++++.++++++++||++|.|+++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE----AQ-RDVTYEEAKQFAEENGLLFLEASAKTGENVED  167 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999887654455 7999999962    11 22346788899999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++++.+.+
T Consensus       168 l~~~l~~~i~~  178 (179)
T 1z0f_A          168 AFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=3e-32  Score=226.96  Aligned_cols=166  Identities=16%  Similarity=0.179  Sum_probs=141.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-cccccccCCcEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAI  175 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-~~~~~~~~ad~i  175 (284)
                      ...+||+|+|++|||||||+++|++..+. ...++++.++..+.+.+++..+.+.+|||+|++.+.. ++..+++.+|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            34799999999999999999999876554 4556778888888888999999999999999998775 788899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                      |+|||++++++|+++..|+.++.....  ..|.|+||||+||.    .. +.+..++++.+++.++++++++||++|.||
T Consensus       101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA----RS-REVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT----TT-CCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc----cc-CCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            999999999999999999999988753  44558999999962    21 223467788999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023316          254 NKIFKFIMAKLFNLP  268 (284)
Q Consensus       254 ~~lf~~l~~~i~~~~  268 (284)
                      +++|+++++.+....
T Consensus       176 ~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          176 RELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=6e-32  Score=218.44  Aligned_cols=164  Identities=26%  Similarity=0.506  Sum_probs=137.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|.++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999887 56678899988888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++++.+..|+..+.......+| ++|+||+|+.    ++ +.+..++++.+++..+++++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE----KE-RHVSIQEAESYAESVGAKHYHTSAKQNKGIEE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc----cc-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            999999999999999999998876544444 7999999962    11 22336778899999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++.+.+.+
T Consensus       159 l~~~l~~~~~~  169 (170)
T 1z08_A          159 LFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.2e-32  Score=223.73  Aligned_cols=162  Identities=15%  Similarity=0.158  Sum_probs=135.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+.. ..+|++.++ ...+.+++..+.+++|||+|++++..+ ..+++.+|++|
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            347999999999999999999999999884 445777665 456778999999999999999999886 67999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC-CCCc
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNI  251 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa-~~~~  251 (284)
                      +|||++++++|+++..|+..+..+.    ...|.|||+||+|+.    . .+.+..+++.++++.++++++++|| ++|.
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~  171 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA----Q-YRQVTKAEGVALAGRFGCLFFEVSACLDFE  171 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG----G-GCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh----h-cCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence            9999999999999999999998763    455568999999962    1 1223467889999999999999999 8999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023316          252 NVNKIFKFIMAKLFN  266 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~  266 (284)
                      ||+++|+++++.+.+
T Consensus       172 gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          172 HVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhh
Confidence            999999999988753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-31  Score=217.16  Aligned_cols=166  Identities=25%  Similarity=0.472  Sum_probs=137.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ...+||+++|++|||||||+++|+++.+.  ...+|++.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            45799999999999999999999999986  4556889998888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      |+|||++++.+++++..|+..+........| ++|+||+|+.    .+ .....++++.+++.++++++++||++|.|++
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (180)
T 2g6b_A           88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA----HE-RVVKREDGEKLAKEYGLPFMETSAKTGLNVD  162 (180)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT----SC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC----cc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            9999999999999999999999887654445 7999999972    21 2234677888999999999999999999999


Q ss_pred             HHHHHHHHHHhCCc
Q 023316          255 KIFKFIMAKLFNLP  268 (284)
Q Consensus       255 ~lf~~l~~~i~~~~  268 (284)
                      ++|+++.+.+.+..
T Consensus       163 ~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          163 LAFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.7e-31  Score=217.30  Aligned_cols=167  Identities=19%  Similarity=0.179  Sum_probs=143.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.+.. ..+|++.++ ...+.+++..+.+++|||+|++++..++..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            357999999999999999999999988874 445777666 677888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++++|+.+..|+.++.+...  ..|.++|+||+|+.    + .+.+..++++.+++.++++++++||++|.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  157 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH----M-ERVISYEEGKALAESWNAAFLESSAKENQTAV  157 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT----T-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch----h-cceecHHHHHHHHHHhCCcEEEEecCCCCCHH
Confidence            99999999999999999999977643  44558999999962    2 23344788999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCccc
Q 023316          255 KIFKFIMAKLFNLPWT  270 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~~  270 (284)
                      ++|+++++.+......
T Consensus       158 ~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          158 DVFRRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999877543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-31  Score=221.30  Aligned_cols=171  Identities=22%  Similarity=0.397  Sum_probs=149.2

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+|+|++|||||||+++|++..+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            345799999999999999999999999988 5566889999888899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                      |+|||++++.+++++..|+..+..+..  ..|+++|+||+|+.      ......+++..+++.++++++++||+++.|+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE------NREVDRNEGLKFARKHSMLFIEASAKTCDGV  165 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS------SCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc------ccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence            999999999999999999999977642  34447999999962      1223367788899999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcccccc
Q 023316          254 NKIFKFIMAKLFNLPWTVKR  273 (284)
Q Consensus       254 ~~lf~~l~~~i~~~~~~~~~  273 (284)
                      +++|+++.+.+.+.++..+.
T Consensus       166 ~~l~~~l~~~~~~~~~~~~~  185 (195)
T 1x3s_A          166 QCAFEELVEKIIQTPGLWES  185 (195)
T ss_dssp             HHHHHHHHHHHHTSGGGTCC
T ss_pred             HHHHHHHHHHHHhhhhhhcc
Confidence            99999999999887654443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=9.8e-32  Score=216.76  Aligned_cols=165  Identities=25%  Similarity=0.402  Sum_probs=144.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            4689999999999999999999999987 556788988888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++.+++++..|+..+.......+| ++|+||+|+...  ...+.+..+++..+++..+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE--GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS--SCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc--ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999887654555 799999997321  111233467788899999999999999999999999


Q ss_pred             HHHHHHHHh
Q 023316          257 FKFIMAKLF  265 (284)
Q Consensus       257 f~~l~~~i~  265 (284)
                      |+++.+.+.
T Consensus       160 ~~~l~~~i~  168 (170)
T 1ek0_A          160 FLGIGEKIP  168 (170)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHHHHh
Confidence            999987764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.2e-31  Score=217.44  Aligned_cols=167  Identities=27%  Similarity=0.430  Sum_probs=144.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+++|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            345799999999999999999999999988 4556889999888899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      |+|||++++.+|+.+..|+..+.......+| ++|+||+|+.    +. .....++++.+++..+++++++||++|.|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL----DA-RKVTAEDAQTYAQENGLFFMETSAKTATNVK  163 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT----TT-CCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc----cc-ccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence            9999999999999999999999888654455 7999999962    21 2234677889999999999999999999999


Q ss_pred             HHHHHHHHHHhCCc
Q 023316          255 KIFKFIMAKLFNLP  268 (284)
Q Consensus       255 ~lf~~l~~~i~~~~  268 (284)
                      ++|+++.+.+...+
T Consensus       164 ~l~~~l~~~~~~~~  177 (181)
T 2efe_B          164 EIFYEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999998886554

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=220.50  Aligned_cols=166  Identities=21%  Similarity=0.408  Sum_probs=148.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            45799999999999999999999999988 56678899999899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++.+|+.+..|+..+........| |+|+||+|+.    .. .....++++.+++.++++++++||++|.|+++
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----TK-KVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT----TT-CCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc----cc-cccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999999888665555 7999999962    22 22336778899999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023316          256 IFKFIMAKLFNLP  268 (284)
Q Consensus       256 lf~~l~~~i~~~~  268 (284)
                      +|+++.+.+.+..
T Consensus       169 l~~~l~~~i~~~~  181 (196)
T 3tkl_A          169 SFMTMAAEIKKRM  181 (196)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887553

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.8e-31  Score=222.14  Aligned_cols=166  Identities=20%  Similarity=0.377  Sum_probs=147.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|.++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            45799999999999999999999999988 56678999998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++.+|+.+..|+..+.......+| ++|+||+|+.    +. .....+++..+++..+++++++||++|.|+++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  160 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK----DK-RVVEYDVAKEFADANKMPFLETSALDSTNVED  160 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT----TT-CCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----cc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999887655455 7999999962    21 22346778889999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023316          256 IFKFIMAKLFNLP  268 (284)
Q Consensus       256 lf~~l~~~i~~~~  268 (284)
                      +|.++.+.+.+..
T Consensus       161 l~~~l~~~i~~~~  173 (206)
T 2bcg_Y          161 AFLTMARQIKESM  173 (206)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999886543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=217.96  Aligned_cols=163  Identities=21%  Similarity=0.262  Sum_probs=132.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC--CcccccccccCCcEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL  176 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~--~~~~~~~~~~~ad~ii  176 (284)
                      ..+||+++|++|||||||+++|.+..+...+++.|.++..+.+.+++..+.+.+|||+|++.  +..+...+++.+|+++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i   82 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV   82 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence            36899999999999999999999998876667888888888889999999999999999998  6677888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++++|+.+..|+..+....  ...|.|+|+||+|+.    +. +.+..++++.++..++++++++||++|.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  157 (175)
T 2nzj_A           83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA----RC-REVSVEEGRACAVVFDCKFIETSATLQHNVA  157 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT----TT-CCSCHHHHHHHHHHHTSEEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc----cc-cccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence            9999999999999999999988753  244558999999962    22 2233667888899999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023316          255 KIFKFIMAKLFN  266 (284)
Q Consensus       255 ~lf~~l~~~i~~  266 (284)
                      ++|+++.+.+..
T Consensus       158 ~l~~~l~~~~~~  169 (175)
T 2nzj_A          158 ELFEGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.2e-32  Score=225.09  Aligned_cols=164  Identities=23%  Similarity=0.428  Sum_probs=138.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35799999999999999999999999887 55678899998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++.+++++..|++.+........| ++|+||+|+.    .. +....++++.+++.+ +++++++||++|.|++
T Consensus       104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A          104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE----TD-REITRQQGEKFAQQITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence            999999999999999999999888665555 7999999962    11 223366788888885 8899999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023316          255 KIFKFIMAKLFN  266 (284)
Q Consensus       255 ~lf~~l~~~i~~  266 (284)
                      ++|+++.+.+.+
T Consensus       179 ~l~~~l~~~i~~  190 (192)
T 2il1_A          179 EIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.2e-31  Score=216.47  Aligned_cols=162  Identities=26%  Similarity=0.449  Sum_probs=138.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|+++++. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|+|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence            689999999999999999999999987 5567889888888888899899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||++++.+++++..|+..+........| ++|+||+|+.      ......+++..+++.++++++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  156 (170)
T 1g16_A           83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  156 (170)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT------TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC------cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999999999999888654455 7999999961      12234677888999999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 023316          258 KFIMAKLFNL  267 (284)
Q Consensus       258 ~~l~~~i~~~  267 (284)
                      +++.+.+.+.
T Consensus       157 ~~l~~~~~~~  166 (170)
T 1g16_A          157 FTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.7e-31  Score=215.35  Aligned_cols=163  Identities=26%  Similarity=0.434  Sum_probs=143.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45799999999999999999999999887 45568888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++++++..|+..+........| ++|+||+|+.    ++ .....+++..+++..+++++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  158 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA----NK-RAVDFQEAQSYADDNSLLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc----cc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999887554555 7999999962    11 22336778889999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023316          256 IFKFIMAKLF  265 (284)
Q Consensus       256 lf~~l~~~i~  265 (284)
                      +|+++.+.+.
T Consensus       159 l~~~i~~~~~  168 (170)
T 1r2q_A          159 IFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.4e-31  Score=217.97  Aligned_cols=164  Identities=15%  Similarity=0.201  Sum_probs=141.7

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+|+|++|||||||+++|+++.+. ...++++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            445899999999999999999999999888 4445777666 67788899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhH-C-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC-CCcC
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT-HNIN  252 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~-~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~-~~~~  252 (284)
                      |+|||++++++|+.+..|+..+... . ...|.|+|+||+|+.    + .+.+..++++.+++.++++++++||+ +|.|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~  168 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM----H-LRKVTRDQGKEMATKYNIPYIETSAKDPPLN  168 (183)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS----T-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch----h-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence            9999999999999999999998764 3 334458999999962    2 12344778899999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhC
Q 023316          253 VNKIFKFIMAKLFN  266 (284)
Q Consensus       253 v~~lf~~l~~~i~~  266 (284)
                      ++++|+++.+.+.+
T Consensus       169 v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          169 VDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.3e-31  Score=216.54  Aligned_cols=162  Identities=16%  Similarity=0.203  Sum_probs=128.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-cccccccCCcEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF  177 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-~~~~~~~~ad~iil  177 (284)
                      .+||+++|++|||||||+++|.+..+. ...++.+.+.....+.+++..+.+.+|||+|++++.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            489999999999999999999988776 4455667888888889999999999999999999876 78888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||++++++|+.+..|+.++.....  +.|.++|+||+|+.    + ...+..+++..+++.++++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA----R-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG----G-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh----h-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHH
Confidence            9999999999999999999988765  44558999999962    1 233447888999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++++.+..
T Consensus       157 l~~~l~~~i~~  167 (169)
T 3q85_A          157 LFEGAVRQIRL  167 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.98  E-value=1.3e-31  Score=215.79  Aligned_cols=163  Identities=20%  Similarity=0.393  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.++.+. ...+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            4799999999999999999999999887 556688999988999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |||++++++++++..|+..+.......|.++|+||+|+.    +. .....++++.+++.++++++++||++|.|++++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  158 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL----DD-SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF  158 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG----GG-CSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC----cc-cccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998876556668999999962    11 2233677888999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023316          258 KFIMAKLFN  266 (284)
Q Consensus       258 ~~l~~~i~~  266 (284)
                      +++.+.+.+
T Consensus       159 ~~l~~~~~~  167 (168)
T 1z2a_A          159 KYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.98  E-value=1.3e-31  Score=220.00  Aligned_cols=166  Identities=25%  Similarity=0.364  Sum_probs=146.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999988 56678898998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++++++..|+..+.......+| ++|+||+|+.    .. .....+++..+++..+++++++||++|.|+++
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD----AD-REVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            999999999999999999999887654555 7999999962    11 22336778889999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023316          256 IFKFIMAKLFNLP  268 (284)
Q Consensus       256 lf~~l~~~i~~~~  268 (284)
                      +|+++++.+.+..
T Consensus       163 l~~~l~~~~~~~~  175 (186)
T 2bme_A          163 AFVQCARKILNKI  175 (186)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.98  E-value=4.5e-31  Score=213.09  Aligned_cols=163  Identities=27%  Similarity=0.444  Sum_probs=144.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|.++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999987 55668898888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++.+++++..|++.+.......+| ++|+||+|+.    +. +....+++..+++..+++++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT----DV-REVMERDAKDYADSIHAIFVETSAKNAININE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            999999999999999999999988555555 6999999962    11 22346778889999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023316          256 IFKFIMAKLF  265 (284)
Q Consensus       256 lf~~l~~~i~  265 (284)
                      +|+++.+.+.
T Consensus       159 l~~~i~~~i~  168 (170)
T 1z0j_A          159 LFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999998774

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.98  E-value=1.2e-31  Score=218.93  Aligned_cols=162  Identities=19%  Similarity=0.294  Sum_probs=133.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ...+||+++|++|||||||+++|+++.+....+|++.. +.+.+.+++..+.+++|||+|+++     ..|++++|++|+
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            35799999999999999999999999988755677744 467788899999999999999987     468899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcC
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNIN  252 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~  252 (284)
                      |||++++++|+++..|++.+....    ...|.++||||+|+.   ....+.+..+++..+++.. +++++++||++|.|
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS---ASSPRVVGDARARALXADMKRCSYYETXATYGLN  155 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB---TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---ccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence            999999999999999876665542    233447999999962   1122234477788888876 68999999999999


Q ss_pred             HHHHHHHHHHHHhCCc
Q 023316          253 VNKIFKFIMAKLFNLP  268 (284)
Q Consensus       253 v~~lf~~l~~~i~~~~  268 (284)
                      ++++|+++++.+.+..
T Consensus       156 i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          156 VDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.8e-31  Score=225.32  Aligned_cols=170  Identities=24%  Similarity=0.388  Sum_probs=140.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|.++.+. ...+|++.++....+.+++..+.+.+|||+|+++|..++..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45799999999999999999999999988 55678899998888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++.+|+++..|+..+.......+| |||+||+|+.    .. ..+..+++..+++..+++++++||++|.||++
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA----HL-RAVPTEESKTFAQENQLLFTETSALNSENVDK  165 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999887654455 7999999962    11 22336778889999999999999999999999


Q ss_pred             HHHHHHHHHhCCccccc
Q 023316          256 IFKFIMAKLFNLPWTVK  272 (284)
Q Consensus       256 lf~~l~~~i~~~~~~~~  272 (284)
                      +|+++++.+.+.....+
T Consensus       166 l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          166 AFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHHHHhhhcc
Confidence            99999999987655444

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.98  E-value=8.9e-32  Score=224.66  Aligned_cols=166  Identities=25%  Similarity=0.376  Sum_probs=137.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999999887 55678898998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++++++..|+..+.......+| ++|+||+|+.    .. .....+++..+++..+++++++||++|.|+++
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  177 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD----PE-REVTFLEASRFAQENELMFLETSALTGENVEE  177 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999887654455 7999999962    11 22336778889999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023316          256 IFKFIMAKLFNLP  268 (284)
Q Consensus       256 lf~~l~~~i~~~~  268 (284)
                      +|+++++.+.+..
T Consensus       178 l~~~l~~~i~~~~  190 (200)
T 2o52_A          178 AFLKCARTILNKI  190 (200)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=6.7e-31  Score=217.63  Aligned_cols=169  Identities=17%  Similarity=0.264  Sum_probs=142.6

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+++|++|||||||+++|+++.+.. ..+|++.++ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            3467999999999999999999999998874 445666554 56677888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEc
Q 023316          176 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSS  246 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~-~~~~~~~~~~~~~a~~~~~-~~~~~S  246 (284)
                      |+|||++++++|+++. .|+..+..+.+..|.++|+||+|+.....      . ..+.+..+++..+++.+++ +++++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  173 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  173 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence            9999999999999997 89999998876666689999999732100      0 0112347788999999998 999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhC
Q 023316          247 ATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~  266 (284)
                      |++|.|++++|+++++.++.
T Consensus       174 a~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          174 ALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.98  E-value=3.4e-31  Score=219.25  Aligned_cols=164  Identities=26%  Similarity=0.403  Sum_probs=144.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++.+.++..+.+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45799999999999999999999999988 55568899998888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++.+++.+..|+..+........| ++|+||+||.    .. .....++++.+++..+++++++||++|.|+++
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS----QA-REVPTEEARMFAENNGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999877544455 7999999962    11 22346778889999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++.+.+.+
T Consensus       178 l~~~l~~~i~~  188 (193)
T 2oil_A          178 AFETVLKEIFA  188 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=9.7e-33  Score=228.49  Aligned_cols=165  Identities=22%  Similarity=0.424  Sum_probs=146.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            45799999999999999999999999987 55568888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++|+.+..|+..+.......+| |+|+||+|+.    + ......++++.+++.++++++++||++|.|+++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME----E-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ  175 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----G-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----c-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            999999999999999999999988755555 7999999962    2 123347788999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|+++++.+.+.
T Consensus       176 l~~~l~~~i~~~  187 (191)
T 3dz8_A          176 AFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.98  E-value=5.4e-31  Score=214.38  Aligned_cols=166  Identities=22%  Similarity=0.374  Sum_probs=141.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+++|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            345799999999999999999999999887 5567889999888999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC-----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCC
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATH  249 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~  249 (284)
                      ++|||++++.+++++..|+..+....     ...|.++|+||+|+.      ......+++..+++ ..+++++++||++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  157 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS------ERQVSTEEAQAWCRDNGDYPYFETSAKD  157 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS------SCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc------ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence            99999999999999999999998764     334557999999962      12234677888888 5678999999999


Q ss_pred             CcCHHHHHHHHHHHHhCCc
Q 023316          250 NINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~~  268 (284)
                      |.|++++|+++++.+.+.+
T Consensus       158 ~~gi~~l~~~l~~~~~~~~  176 (177)
T 1wms_A          158 ATNVAAAFEEAVRRVLATE  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHHHHHhhc
Confidence            9999999999999987653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=2.3e-31  Score=220.52  Aligned_cols=167  Identities=25%  Similarity=0.421  Sum_probs=144.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            35799999999999999999999999987 55678898888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++++.+..|+..+.......+| ++|+||+|+.    + .+.+..++++++++.++++++++||++|.|+++
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS----D-IREVPLKDAKEYAESIGAIVVETSAKNAINIEE  175 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG----G-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc----c-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            999999999999999999999888654555 7999999962    1 122346788999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcc
Q 023316          256 IFKFIMAKLFNLPW  269 (284)
Q Consensus       256 lf~~l~~~i~~~~~  269 (284)
                      +|+++.+.+.+.++
T Consensus       176 l~~~l~~~i~~~~~  189 (192)
T 2fg5_A          176 LFQGISRQIPPLDP  189 (192)
T ss_dssp             HHHHHHHTCC----
T ss_pred             HHHHHHHHHHhhCC
Confidence            99999998865543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.98  E-value=3e-31  Score=220.92  Aligned_cols=171  Identities=23%  Similarity=0.292  Sum_probs=137.0

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+++|++|||||||+++|+++.+... .+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            34579999999999999999999999988744 45666444 56778899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEc
Q 023316          176 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSS  246 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~S  246 (284)
                      |+|||++++++|+++. .|+..+..+....|+|+|+||+|+.....       .....+..+++..+++.+++ +++++|
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  175 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS  175 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEe
Confidence            9999999999999997 79999998877666689999999732100       00122346788899999887 999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCc
Q 023316          247 ATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      |++|.|++++|+++++.+.+.+
T Consensus       176 a~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          176 ALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999886543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=5.7e-31  Score=215.72  Aligned_cols=173  Identities=23%  Similarity=0.332  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.+... .+|++..+ ...+.+++..+.+++|||+|++++..++..+++.+|++|
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            3579999999999999999999999988744 44665444 566788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316          177 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      +|||++++.+|+++. .|+..+....+..|.++|+||+|+......       ....+..+++..+++.+++ +++++||
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            999999999999997 799999888776666899999996211000       0012336778889999997 9999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCcccc
Q 023316          248 THNINVNKIFKFIMAKLFNLPWTV  271 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~~~~~~  271 (284)
                      ++|.|++++|+++.+.+.+.++..
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~k  185 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLCPPPVK  185 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCCC--
T ss_pred             CCccCHHHHHHHHHHHHhcccccC
Confidence            999999999999999998876543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.98  E-value=2e-31  Score=222.46  Aligned_cols=167  Identities=19%  Similarity=0.186  Sum_probs=137.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+.. ..+|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            457999999999999999999999999884 445777666 566677788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++++|+.+..|+..+.....  ..|.|+|+||+|+.    + ...+..+++..+++.++++++++||++|.|++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  175 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS----P-EREVQAVEGKKLAESWGATFMESSARENQLTQ  175 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG----G-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc----c-ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence            99999999999999999999987632  34558999999962    2 12334678899999999999999999999999


Q ss_pred             HHHHHHHHHHhCCccc
Q 023316          255 KIFKFIMAKLFNLPWT  270 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~~  270 (284)
                      ++|+++.+.+.+....
T Consensus       176 ~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          176 GIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999998766543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=2.8e-31  Score=220.58  Aligned_cols=163  Identities=19%  Similarity=0.259  Sum_probs=134.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC--CCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-CcccccccccCCcEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI  175 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~~~~~~~~ad~i  175 (284)
                      ..+||+++|++|||||||+++|++..  +...++++|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|++
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~   84 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   84 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence            36999999999999999999999744  345567788898888899999999999999999987 667888899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                      ++|||+++++||+.+..|+..+....  ...|.|+|+||+||.    . .+.+..+++..++..++++|++|||++|.||
T Consensus        85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~----~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v  159 (192)
T 2cjw_A           85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV----R-XREVSVSEGRAXAVVFDXKFIETSAAVQHNV  159 (192)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG----G-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh----c-cccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence            99999999999999999998887753  234557999999962    1 1223366778888999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 023316          254 NKIFKFIMAKLFN  266 (284)
Q Consensus       254 ~~lf~~l~~~i~~  266 (284)
                      +++|+++++.+..
T Consensus       160 ~~lf~~l~~~~~~  172 (192)
T 2cjw_A          160 KELFEGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998853

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=3.5e-31  Score=213.30  Aligned_cols=161  Identities=18%  Similarity=0.243  Sum_probs=117.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||+++|.+..+....++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            5899999999999999999999877664445556555 467788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |++++++|+.+..|+..+....  .+.|.++|+||+|+.    +. .....+++..+++..+++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  155 (166)
T 3q72_A           81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV----RS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALF  155 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC----SS-CCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc----cc-cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Confidence            9999999999999999988753  344558999999962    22 2334777889999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023316          258 KFIMAKLFN  266 (284)
Q Consensus       258 ~~l~~~i~~  266 (284)
                      +++.+.+..
T Consensus       156 ~~l~~~~~~  164 (166)
T 3q72_A          156 EGVVRQIRL  164 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.97  E-value=8e-31  Score=218.67  Aligned_cols=164  Identities=24%  Similarity=0.452  Sum_probs=145.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|++..+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   86 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL   86 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence            4799999999999999999999999987 556688989888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++++|+.+..|+..+........| ++|+||+|+.    +. +....++++.+++.++++++++||++|.|++++
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME----DE-RVVSSERGRQLADHLGFEFFEASAKDNINVKQT  161 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT----TS-CCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC----cc-cccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999887654445 7999999962    21 223467788999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |+++.+.+.+.
T Consensus       162 ~~~l~~~i~~~  172 (203)
T 1zbd_A          162 FERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=3.9e-31  Score=215.17  Aligned_cols=164  Identities=21%  Similarity=0.425  Sum_probs=143.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999888 55668898998899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++.+++.+..|+..+.......+| ++|+||+|+.    +. .....+++..+++..+++++++||++|.|+++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS----DK-RQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  166 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc----cc-CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999877554455 7999999962    11 22336778888999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++.+.+.+
T Consensus       167 l~~~l~~~~~~  177 (179)
T 2y8e_A          167 LFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHhh
Confidence            99999987643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=2.6e-31  Score=223.14  Aligned_cols=168  Identities=25%  Similarity=0.325  Sum_probs=140.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.+. ...+|++.++ .+.+.+++..+.+.+|||+|+++|..++..+++++|++|
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            45799999999999999999999999988 4455777665 456777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CC-cccchHHHHHHHHHHcC-CcEEEEcC
Q 023316          177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PD-LQWTIATQARAYAKAMK-ATLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~-~~~~~~~~~~~~a~~~~-~~~~~~Sa  247 (284)
                      +|||++++++|+++ ..|+..+.+.....|.|+|+||+|+..+..      .. ...+..+++..+++.++ ++|+++||
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  184 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  184 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence            99999999999999 799999988876666689999999731100      00 12234677899999988 69999999


Q ss_pred             C-CCcCHHHHHHHHHHHHhC
Q 023316          248 T-HNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       248 ~-~~~~v~~lf~~l~~~i~~  266 (284)
                      + ++.||+++|+.+++.+++
T Consensus       185 k~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          185 LQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhh
Confidence            9 689999999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=8.1e-31  Score=213.68  Aligned_cols=164  Identities=16%  Similarity=0.227  Sum_probs=140.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.+.. ..+|++.++. ..+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            447999999999999999999999998884 4457776665 77788998899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhH-CC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKW-NQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~-~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++++++.+..|+..+.+. .. ..|.++|+||+|+.    + ......+++..++...+++++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  160 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE----S-QRQVPRSEASAFGASHHVAYFEASAKLRLNVD  160 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG----G-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence            999999999999999999998543 33 44558999999962    1 12233677888999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 023316          255 KIFKFIMAKLFNL  267 (284)
Q Consensus       255 ~lf~~l~~~i~~~  267 (284)
                      ++|+++.+.+.+.
T Consensus       161 ~l~~~l~~~~~~~  173 (181)
T 2fn4_A          161 EAFEQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=5.9e-31  Score=221.08  Aligned_cols=170  Identities=22%  Similarity=0.368  Sum_probs=140.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|.++.+. ...+|++.++ ...+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            35799999999999999999999999987 4445777554 466778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-------cchHHHHHHHHHHcCC-cEEEEcC
Q 023316          177 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-------WTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-------~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      +|||++++++|+++. .|+..+..+.+..|+|||+||+||.    +...       .+..+++..+++.+++ +++++||
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR----DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh----hCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999997 8999999887666668999999962    2111       1246778889999996 9999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCccccc
Q 023316          248 THNINVNKIFKFIMAKLFNLPWTVK  272 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~~~~~~~  272 (284)
                      ++|.|++++|+++++.+.+.....+
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~~  186 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRKE  186 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC-----
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhcc
Confidence            9999999999999999987765444

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=5e-31  Score=217.67  Aligned_cols=162  Identities=25%  Similarity=0.430  Sum_probs=140.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-ccccccccCCcEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAIL  176 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-~~~~~~~~~ad~ii  176 (284)
                      ..+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++. .++..+++.+|++|
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii   98 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   98 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence            4799999999999999999999999988 556688999988899999999999999999999998 88999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC---c
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN---I  251 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~---~  251 (284)
                      +|||++++.+|+.+..|+.++.+..  ...|.|+|+||+|+.    .. ..+..++++.+++.++++++++||+++   .
T Consensus        99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  173 (189)
T 1z06_A           99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR----SA-IQVPTDLAQKFADTHSMPLFETSAKNPNDND  173 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-ceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence            9999999999999999999998874  344558999999962    11 223467788999999999999999999   9


Q ss_pred             CHHHHHHHHHHHHh
Q 023316          252 NVNKIFKFIMAKLF  265 (284)
Q Consensus       252 ~v~~lf~~l~~~i~  265 (284)
                      |++++|+++++.+.
T Consensus       174 ~i~~l~~~l~~~i~  187 (189)
T 1z06_A          174 HVEAIFMTLAHKLK  187 (189)
T ss_dssp             CHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=3.4e-31  Score=220.72  Aligned_cols=169  Identities=22%  Similarity=0.306  Sum_probs=136.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            34799999999999999999999999987 55568898888888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCC-ceEEEEeCCCCCCCCC-CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLP-PDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~-~~Ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++.+++++..|++.+....... |.|+|+||+||..... +..+.+..++++.+++..+++++++||++|.||+
T Consensus       106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~  185 (199)
T 2p5s_A          106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV  185 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence            9999999999999999999998876544 4479999999621100 0112234677889999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023316          255 KIFKFIMAKLFN  266 (284)
Q Consensus       255 ~lf~~l~~~i~~  266 (284)
                      ++|+++++.+.+
T Consensus       186 el~~~l~~~i~~  197 (199)
T 2p5s_A          186 EAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998854

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=9e-31  Score=210.45  Aligned_cols=162  Identities=16%  Similarity=0.234  Sum_probs=136.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.++.+...+ +|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            4689999999999999999999999887444 4555554 4566788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||++++++++.+..|+..+.....  ..|.++|+||+|+.    +. .....+++..+++.++++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE----DK-RQVSVEEAKNRADQWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc----cc-CccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            9999999999999999999988754  44558999999962    21 22346788889999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++.+.+.+
T Consensus       157 l~~~l~~~i~~  167 (168)
T 1u8z_A          157 VFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=1.6e-30  Score=213.53  Aligned_cols=168  Identities=14%  Similarity=0.204  Sum_probs=141.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|.++.+...++++..+.....+.+++..+.+++|||+|++.+..++..+++.+|++++|
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   82 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   82 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999999885555444556667778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||++++++|+.+..|+..+.....  ..|.++|+||+|+.      ......+++..+++.++++++++||++|.|++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A           83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP------SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA  156 (189)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS------SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999999988643  34558999999962      1233467888999999999999999999999999


Q ss_pred             HHHHHHHHhCCccccc
Q 023316          257 FKFIMAKLFNLPWTVK  272 (284)
Q Consensus       257 f~~l~~~i~~~~~~~~  272 (284)
                      |+++.+.+........
T Consensus       157 ~~~l~~~~~~~~~~~~  172 (189)
T 4dsu_A          157 FYTLVREIRKHKEKMS  172 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcc
Confidence            9999999876554443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=8.6e-31  Score=215.83  Aligned_cols=166  Identities=22%  Similarity=0.354  Sum_probs=143.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccceeee-eEEEEECCe---------EEEEEEEeCCCCcCCcccc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHV  165 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~-~~~~~~~~~---------~~~l~l~Dt~G~e~~~~~~  165 (284)
                      ....+||+|+|++|||||||+++|.++.+. ...+|.+.++. .+.+.+++.         .+.+.+|||+|++++..++
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            345799999999999999999999999887 55668888887 667777766         7899999999999999999


Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023316          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF  243 (284)
Q Consensus       166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~  243 (284)
                      ..+++++|++|+|||++++.+++++..|+..+.....  ..|.++|+||+|+.    +. .....++++++++.++++++
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE----DQ-RAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-cccCHHHHHHHHHHcCCCEE
Confidence            9999999999999999999999999999999988763  44558999999962    11 22336778889999999999


Q ss_pred             EEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          244 FSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       244 ~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ++||++|.|++++|+++.+.+.+.
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=1.4e-30  Score=209.47  Aligned_cols=161  Identities=20%  Similarity=0.260  Sum_probs=137.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.++.+. ...+|++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            3689999999999999999999999887 4445666554 4667778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN  254 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~  254 (284)
                      |||++++++|+.+..|+..+....  ...|.++|+||+|+.    ++ .....+++..+++.+ +++++++||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE----DE-RVVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc----cc-ccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence            999999999999999999987762  344558999999962    11 223367788889887 7899999999999999


Q ss_pred             HHHHHHHHHHh
Q 023316          255 KIFKFIMAKLF  265 (284)
Q Consensus       255 ~lf~~l~~~i~  265 (284)
                      ++|+++.+.+.
T Consensus       156 ~l~~~l~~~i~  166 (167)
T 1c1y_A          156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998774

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=6.1e-31  Score=219.72  Aligned_cols=166  Identities=25%  Similarity=0.356  Sum_probs=144.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|++..+. ...++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            34799999999999999999999999988 55668899998888888998899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-----CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCC
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHN  250 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~-----~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~~  250 (284)
                      +|||++++.+|+++..|+..+.....     ..|.++|+||+|+.      ......+++..+++ ..+++++++||++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  159 (207)
T 1vg8_A           86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE------NRQVATKRAQAWCYSKNNIPYFETSAKEA  159 (207)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS------CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc------ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence            99999999999999999999877642     34558999999972      12233667778887 66889999999999


Q ss_pred             cCHHHHHHHHHHHHhCCcc
Q 023316          251 INVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~~~~  269 (284)
                      .|++++|+++++.+.+.+.
T Consensus       160 ~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          160 INVEQAFQTIARNALKQET  178 (207)
T ss_dssp             BSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcc
Confidence            9999999999999876554

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=9.3e-31  Score=215.26  Aligned_cols=168  Identities=25%  Similarity=0.325  Sum_probs=140.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|.++.+. ...+|.+.++ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            34799999999999999999999999987 4455777665 456778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CC-cccchHHHHHHHHHHcC-CcEEEEcC
Q 023316          177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PD-LQWTIATQARAYAKAMK-ATLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~-~~~~~~~~~~~~a~~~~-~~~~~~Sa  247 (284)
                      +|||++++++|+++ ..|+..+..+.+..|.|+|+||+|+..+..      .. ...+..+++..+++.++ ++++++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999999 799999988876666689999999731100      00 12234678899999988 69999999


Q ss_pred             C-CCcCHHHHHHHHHHHHhC
Q 023316          248 T-HNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       248 ~-~~~~v~~lf~~l~~~i~~  266 (284)
                      + ++.|++++|+.+++.++.
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998865

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=3.3e-30  Score=215.13  Aligned_cols=168  Identities=21%  Similarity=0.319  Sum_probs=141.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|.++.+. ...+|++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            35799999999999999999999999988 44557777665 45678899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316          177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      +|||++++++|+++ ..|+..+....+..|.++|+||+|+......       ..+.+..+++..+++..++ +++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA  181 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence            99999999999999 6899999887766666899999997321000       0012336788899999998 8999999


Q ss_pred             CCCcCHHHHHHHHHHHHhC
Q 023316          248 THNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~  266 (284)
                      ++|.|++++|+++.+.+++
T Consensus       182 ~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          182 KTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=7.6e-31  Score=214.95  Aligned_cols=165  Identities=16%  Similarity=0.234  Sum_probs=140.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+...+ +|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            45799999999999999999999999887444 4555554 456778898899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++++++.+..|+..+.....  ..|.++|+||+|+.    +. .....++++.+++.++++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE----DK-RQVSVEEAKNRAEQWNVNYVETSAKTRANVD  169 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-CccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence            99999999999999999999988754  44558999999962    21 2234677888999999999999999999999


Q ss_pred             HHHHHHHHHHhCCc
Q 023316          255 KIFKFIMAKLFNLP  268 (284)
Q Consensus       255 ~lf~~l~~~i~~~~  268 (284)
                      ++|+++.+.+.+..
T Consensus       170 ~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          170 KVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999886543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=1.4e-30  Score=212.53  Aligned_cols=165  Identities=24%  Similarity=0.388  Sum_probs=129.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ...+||+++|++|||||||+++|+++.+. ...++++.++....+.++ +..+.+.+|||+|++.+..++..+++.+|++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   85 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence            34799999999999999999999999887 555688888888888777 6678899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC-----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCC
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATH  249 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~  249 (284)
                      |+|||++++.+++++..|+..+....     ...|.++|+||+|+    .+..+.+..+++..+++ ..+++++++||++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl----~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  161 (182)
T 1ky3_A           86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA----EESKKIVSEKSAQELAKSLGDIPLFLTSAKN  161 (182)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS----CGGGCCSCHHHHHHHHHHTTSCCEEEEBTTT
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc----ccccccCCHHHHHHHHHhcCCCeEEEEecCC
Confidence            99999999999999999999987764     34455899999996    22222334677888888 4678999999999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023316          250 NINVNKIFKFIMAKLFN  266 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~  266 (284)
                      |.|++++|+++.+.+.+
T Consensus       162 ~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          162 AINVDTAFEEIARSALQ  178 (182)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=216.54  Aligned_cols=164  Identities=16%  Similarity=0.237  Sum_probs=141.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|.++.+...+ +|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            45799999999999999999999999987444 4666544 466778998899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++++|+.+..|+..+.....  ..|.++|+||+|+.    +. ..+..+++..+++.++++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  165 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE----DK-RQVSVEEAKNRAEQWNVNYVETSAKTRANVD  165 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc----cc-ccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence            99999999999999999999988754  44558999999962    21 2234678888999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 023316          255 KIFKFIMAKLFNL  267 (284)
Q Consensus       255 ~lf~~l~~~i~~~  267 (284)
                      ++|+++++.+...
T Consensus       166 ~l~~~l~~~i~~~  178 (206)
T 2bov_A          166 KVFFDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999988754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=219.83  Aligned_cols=171  Identities=24%  Similarity=0.322  Sum_probs=123.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.+... .+|++.. ....+.+++..+.+.+|||+|+++|..++..+++++|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            3479999999999999999999999988744 4455544 4566788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316          177 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      +|||++++++|+++. .|+..+.......|.|+|+||+|+......       ....+..+++..+++.+++ +++++||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            999999999999997 799999888766676899999997311000       0012336778899999998 9999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCcc
Q 023316          248 THNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      ++|.|++++|+++++.+.+.++
T Consensus       191 ~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999876544

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.6e-30  Score=216.86  Aligned_cols=163  Identities=25%  Similarity=0.440  Sum_probs=144.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|++..+. ...++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   98 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL   98 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999999987 566788999988889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++.+|+.+..|+..+........| |+|+||+|+.      ......+++..+++.++++++++||++|.|++++
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  172 (213)
T 3cph_A           99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEI  172 (213)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS------SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999887664455 7999999961      1223367788899999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |.++...+.+.
T Consensus       173 ~~~l~~~~~~~  183 (213)
T 3cph_A          173 FFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=2e-31  Score=224.73  Aligned_cols=165  Identities=25%  Similarity=0.410  Sum_probs=142.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCe----------EEEEEEEeCCCCcCCccccc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP  166 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~----------~~~l~l~Dt~G~e~~~~~~~  166 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...+|++.++..+.+.+++.          .+.+.+|||+|+++|..++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            45799999999999999999999999887 45568888888888888776          78899999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                      .+++.+|++|+|||++++.+++++..|+..+....  ...|.|+|+||+|+.    .. .....++++++++.+++++++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~  177 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP----DQ-REVNERQARELADKYGIPYFE  177 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCCEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc----cc-cccCHHHHHHHHHHCCCcEEE
Confidence            99999999999999999999999999999886654  334447999999962    11 223367888999999999999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCC
Q 023316          245 SSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +||+++.|++++|+++.+.+.+.
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=4.4e-30  Score=211.83  Aligned_cols=162  Identities=15%  Similarity=0.230  Sum_probs=128.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|.++.+...+. +++.. ....+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            457999999999999999999999998874444 55544 4467778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||+++..+++++..|+..+.....  ..|.++|+||+|+.    +  .....++++++++.++++++++||++|.|++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  171 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP----T--RTVDTKQAHELAKSYGIPFIETSAKTRQGVE  171 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS----C--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC----c--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999999887643  44558999999962    1  2234677889999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023316          255 KIFKFIMAKLFN  266 (284)
Q Consensus       255 ~lf~~l~~~i~~  266 (284)
                      ++|+++.+.+.+
T Consensus       172 ~l~~~l~~~~~~  183 (190)
T 3con_A          172 DAFYTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.9e-32  Score=228.37  Aligned_cols=164  Identities=21%  Similarity=0.423  Sum_probs=134.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            45799999999999999999999999887 44568888998899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++|+.+..|+..+.......+| |+|+||+|+.    +. +....++++.+++.++++++++||++|.||++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~  185 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----TK-KVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  185 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-------CCCCSCC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC----cc-ccCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            999999999999999999999887665555 7999999973    11 11223456788899999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++++.+.+
T Consensus       186 l~~~l~~~l~~  196 (199)
T 3l0i_B          186 SFMTMAAEIKK  196 (199)
T ss_dssp             HHHHHTTTTTT
T ss_pred             HHHHHHHHHHH
Confidence            99999887754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=4.3e-30  Score=213.06  Aligned_cols=161  Identities=23%  Similarity=0.418  Sum_probs=140.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE------------------------------
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------  147 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~------------------------------  147 (284)
                      ..+||+|+|++|||||||+++|++..+. ...+|++.++....+.+++..                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            4699999999999999999999999988 555688988888888887765                              


Q ss_pred             -------EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          148 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       148 -------~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                             +.+.+|||+|++.+..++..+++.+|++|+|||++++.+++++..|+..+..... .|.++|+||+|+     
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~-----  159 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDK-----  159 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTC-----
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCc-----
Confidence                   8899999999999999999999999999999999999999999999999988765 455899999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                       .......++++++++..+++++++||++|.|++++|+++.+.+.+
T Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence             112234678899999999999999999999999999999988864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=2.3e-30  Score=207.84  Aligned_cols=161  Identities=17%  Similarity=0.275  Sum_probs=137.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.++.+...+ ++++ +.....+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            3689999999999999999999999887444 4555 4446778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||++++.+++++..|+..+.+...  ..|.++|+||+|+.    .. .....+++..+++.++++++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE----SE-REVSSSEGRALAEEWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc----cc-ccCCHHHHHHHHHHhCCCEEEecCCCCcCHHH
Confidence            9999999999999999999887643  44558999999962    11 22346778889999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023316          256 IFKFIMAKLF  265 (284)
Q Consensus       256 lf~~l~~~i~  265 (284)
                      +|+++.+.+.
T Consensus       156 l~~~l~~~~~  165 (167)
T 1kao_A          156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=3.8e-31  Score=223.94  Aligned_cols=169  Identities=24%  Similarity=0.337  Sum_probs=147.1

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (284)
Q Consensus        96 ~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~  174 (284)
                      .....+||+|+|++|||||||+++|+.+.+. ...++.|.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            3455799999999999999999998887776 445688899988889999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       175 iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|+|||++++.+|+++..|+..+.+.....|.|+|+||+|+.+.    .  . ..+...+++..+++++++||++|.|++
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR----K--V-KAKSIVFHRKKNLQYYDISAKSNYNFE  163 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC----S--S-CGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc----c--c-cHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999998776677899999997321    1  1 224566788889999999999999999


Q ss_pred             HHHHHHHHHHhCCcccc
Q 023316          255 KIFKFIMAKLFNLPWTV  271 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~~~  271 (284)
                      ++|+++.+.+...+...
T Consensus       164 ~l~~~l~~~l~~~~~~~  180 (221)
T 3gj0_A          164 KPFLWLARKLIGDPNLE  180 (221)
T ss_dssp             HHHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHHHHhCcccc
Confidence            99999999998876543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=4.4e-31  Score=215.86  Aligned_cols=163  Identities=22%  Similarity=0.369  Sum_probs=126.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.++.+.. ..+|++..+. ..+.+++..+.+++|||+|++++..++..+++++|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            46899999999999999999999998874 4456665543 345567788889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc---------cchHHHHHHHHHHcCC-cEEEEc
Q 023316          178 MFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ---------WTIATQARAYAKAMKA-TLFFSS  246 (284)
Q Consensus       178 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~---------~~~~~~~~~~a~~~~~-~~~~~S  246 (284)
                      |||++++++|+++. .|+..+..+....|.++|+||+|+.    +...         .+..+++.++++.+++ +++++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  161 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR----DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS  161 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh----cCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence            99999999999997 7999999887666668999999962    2211         1246778899999997 999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhC
Q 023316          247 ATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~  266 (284)
                      |++|.|++++|+++++.+++
T Consensus       162 a~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          162 SKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=1.7e-30  Score=217.69  Aligned_cols=167  Identities=23%  Similarity=0.328  Sum_probs=136.6

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ....+||+++|++|||||||+++|+++.+...+. +++ +.....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            3457999999999999999999999999885444 554 55567778889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEc
Q 023316          176 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSS  246 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~S  246 (284)
                      |+|||++++.+|+++. .|+..+.......|.|+|+||+|+......       .......+++..+++.+++ +++++|
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            9999999999999997 899999988766666899999996211000       0011336778889999986 599999


Q ss_pred             CCCCcCHHHHHHHHHHHH
Q 023316          247 ATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i  264 (284)
                      |++|.||+++|+++.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=8.7e-30  Score=213.57  Aligned_cols=171  Identities=20%  Similarity=0.315  Sum_probs=139.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.+.. ..+|++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            457999999999999999999999999884 4456676654 44678898999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316          177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      +|||++++++|+++ ..|+..+....+..|.|+|+||+|+......       ..+.+..+++..+++..++ +++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA  181 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence            99999999999999 6899999887766677899999996211000       0012336678889999988 8999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCcc
Q 023316          248 THNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      ++|.|++++|+++.+.+++...
T Consensus       182 ~~g~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          182 KTKEGVREVFETATRAALQKRY  203 (207)
T ss_dssp             TTCTTHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999886644

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=1.3e-29  Score=202.96  Aligned_cols=160  Identities=15%  Similarity=0.232  Sum_probs=137.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||++++.++.+...+. +++.. ....+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            5899999999999999999999998874444 55543 456777889899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||++++.+++++..|+..+.....  ..|.++|+||+|+.    +  .....+++.++++.++++++++||++|.|++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  155 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA----A--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDA  155 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS----C--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh----h--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            999999999999999999887754  45558999999962    1  223367788899999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |+++.+.+.+
T Consensus       156 ~~~l~~~~~~  165 (166)
T 2ce2_X          156 FYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=8.1e-31  Score=218.77  Aligned_cols=166  Identities=14%  Similarity=0.274  Sum_probs=109.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC--CCC-CcccccceeeeeEEEEECCe--EEEEEEEeCCCCcCCcccccccccCC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA  172 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~~~-~~~~t~~~~~~~~~~~~~~~--~~~l~l~Dt~G~e~~~~~~~~~~~~a  172 (284)
                      ...+||+|+|++|||||||+++|+++  .+. ...+|++.++..+.+.+++.  .+.+.+|||+|++++..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45799999999999999999999998  776 44568888888889999887  88999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ---TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~---~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      |++|+|||++++.+|+.+..|+..+..+..   ..+| ++|+||+|+.    +....+..+++..+++.++++++++||+
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  173 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP----PQRHQVRLDMAQDWATTNTLDFFDVSAN  173 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-----------CCCHHHHHHHHHHTTCEEEECCC-
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc----hhhccCCHHHHHHHHHHcCCEEEEeccC
Confidence            999999999999999999999999998865   3444 7999999962    2012234678899999999999999999


Q ss_pred             C-CcCHHHHHHHHHHHHhCC
Q 023316          249 H-NINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       249 ~-~~~v~~lf~~l~~~i~~~  267 (284)
                      + |.|++++|+++.+.+.+.
T Consensus       174 ~~~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          174 PPGKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             ------CHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHH
Confidence            9 999999999999988654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=1.1e-30  Score=215.79  Aligned_cols=163  Identities=14%  Similarity=0.085  Sum_probs=135.6

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-C-----------cccccceeeeeEEE-EECCeEEEEEEEeCCCCcCCcc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-R-----------SLQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSFD  163 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~-----------~~~t~~~~~~~~~~-~~~~~~~~l~l~Dt~G~e~~~~  163 (284)
                      ....+||+|+|++|||||||++.+.+ .+. .           ..+|.+.++....+ .+++..+.+++|||+|+++|..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            35689999999999999999965554 444 3           23477777777666 6788889999999999999999


Q ss_pred             cccccccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH
Q 023316          164 HVPIACKDAVAILFMFDLT------SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA  237 (284)
Q Consensus       164 ~~~~~~~~ad~iilv~d~~------~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~  237 (284)
                      ++..+++++|++|+|||++      +.++|+.+..|+.++.......|.+||+||+||.    ..   ...++++++++.
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~----~~---~~~~~~~~~~~~  162 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP----DA---LPVEMVRAVVDP  162 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST----TC---CCHHHHHHHHCT
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc----cc---cCHHHHHHHHHh
Confidence            9999999999999999999      6678888889998885444455558999999962    21   346788899999


Q ss_pred             cCC-cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          238 MKA-TLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       238 ~~~-~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +++ +++++||++|.|++++|+++++.+.+.
T Consensus       163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          163 EGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            999 999999999999999999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=9.4e-30  Score=205.47  Aligned_cols=162  Identities=19%  Similarity=0.302  Sum_probs=136.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|+++.+. ...++.+.++ ...+..++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            689999999999999999999999887 4445666554 35567788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~---~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      ||++++++++++..|+..+.+..   ...|.++|+||+|+.    +. +....+++..+++.++++++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES----PS-REVQSSEAEALARTWKCAFMETSAKLNHNVKE  156 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc----cc-cccCHHHHHHHHHHhCCeEEEecCCCCcCHHH
Confidence            99999999999999998887753   345558999999962    11 22335677888899999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|+++.+.+...
T Consensus       157 l~~~l~~~~~~~  168 (172)
T 2erx_A          157 LFQELLNLEKRR  168 (172)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHhhh
Confidence            999999876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-29  Score=210.88  Aligned_cols=162  Identities=14%  Similarity=0.222  Sum_probs=137.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|+++++.. ..+|++.++ ...+.+++..+.+.+|||+|++. ..++..+++.+|++|
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            457999999999999999999999999884 445666554 56677899999999999999998 778888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc-CH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI-NV  253 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~-~v  253 (284)
                      +|||++++++|+++..|+..+....  ...|.|+|+||+|+.    +. ..+..+++..+++.++++++++||++|. |+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi  178 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD----HS-RQVSTEEGEKLATELACAFYECSACTGEGNI  178 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence            9999999999999999999988753  344558999999962    11 2234678889999999999999999999 99


Q ss_pred             HHHHHHHHHHHhC
Q 023316          254 NKIFKFIMAKLFN  266 (284)
Q Consensus       254 ~~lf~~l~~~i~~  266 (284)
                      +++|+++++.+.+
T Consensus       179 ~~l~~~l~~~i~~  191 (196)
T 2atv_A          179 TEIFYELCREVRR  191 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=4.9e-30  Score=216.40  Aligned_cols=170  Identities=22%  Similarity=0.274  Sum_probs=142.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ...+||+|+|++|||||||+++|+++.+.. ..++.+.+.....+... +..+.+.+|||+|++.+..++..+++.+|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            457999999999999999999999988874 44577777766666554 4458899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      |+|||++++.+++++..|+..+........| |+|+||+|+.    + ......+++..+++..+++++++||++|.|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (218)
T 4djt_A           89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK----N-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFG  163 (218)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC---------CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----c-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence            9999999999999999999999887655444 7999999962    2 12334677888889999999999999999999


Q ss_pred             HHHHHHHHHHhCCccccc
Q 023316          255 KIFKFIMAKLFNLPWTVK  272 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~~~~  272 (284)
                      ++|+++++.+.+......
T Consensus       164 ~l~~~l~~~~~~~~~~~~  181 (218)
T 4djt_A          164 LPFLHLARIFTGRPDLIF  181 (218)
T ss_dssp             HHHHHHHHHHHCCTTCCB
T ss_pred             HHHHHHHHHHhccccccc
Confidence            999999999987765443

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=6.1e-30  Score=212.70  Aligned_cols=161  Identities=20%  Similarity=0.217  Sum_probs=126.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEE--E-CCeEEEEEEEeCCCCcCCcccc---cccccC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLM--V-QGARIAFSIWDVGGDSRSFDHV---PIACKD  171 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~--~-~~~~~~l~l~Dt~G~e~~~~~~---~~~~~~  171 (284)
                      ...+||+++|++|||||||++++.+. +.. .++.+.++..+.+.  + ++..+.+++|||+|+++|..+.   ..++++
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSC-CCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhc-CCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            34799999999999999999987764 332 24555555544443  3 3677889999999999998877   799999


Q ss_pred             CcEEEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-----cccchHHHHHHHHH----HcCC
Q 023316          172 AVAILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-----LQWTIATQARAYAK----AMKA  240 (284)
Q Consensus       172 ad~iilv~d~~~~--~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~a~----~~~~  240 (284)
                      +|++|+|||++++  ++++.+..|+.++.......|.+|||||+||   .+++     .+.+..+++..+++    .+++
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG---LSDDHKIETQRDIHQRANDDLADAGLEKLHL  172 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc---CchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence            9999999999998  7778888888888766666666899999996   2211     12223566778888    7789


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          241 TLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       241 ~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +|+++||++ .||+++|+.+++.+
T Consensus       173 ~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          173 SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             ceEEEEech-hhHHHHHHHHHHHh
Confidence            999999999 99999999999876

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.3e-29  Score=208.71  Aligned_cols=165  Identities=18%  Similarity=0.246  Sum_probs=139.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|.++.+. ...+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            3689999999999999999999999887 4445666544 3556778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      |||++++.+++++..|+..+.....   ..|.|+|+||+|+.    +  .....+++..+++.++++++++||++|.|++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (199)
T 2gf0_A           86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET----Q--REVDTREAQAVAQEWKCAFMETSAKMNYNVK  159 (199)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS----S--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC----c--cccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence            9999999999999999888776532   34558999999972    1  2233677888899999999999999999999


Q ss_pred             HHHHHHHHHHhCCccc
Q 023316          255 KIFKFIMAKLFNLPWT  270 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~~  270 (284)
                      ++|+++++.+......
T Consensus       160 ~l~~~l~~~~~~~~~~  175 (199)
T 2gf0_A          160 ELFQELLTLETRRNMS  175 (199)
T ss_dssp             HHHHHHHHHCSSSCEE
T ss_pred             HHHHHHHHHHhhhhcc
Confidence            9999999988766443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=4.1e-30  Score=211.69  Aligned_cols=167  Identities=16%  Similarity=0.331  Sum_probs=126.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC--CCC-CcccccceeeeeEEEEE---CCeEEEEEEEeCCCCcCCcccccccccCCc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV  173 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~--~~~-~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad  173 (284)
                      .+||+++|++|||||||+++|++.  .+. ...+|+|.++..+.+.+   ++..+.+++|||+|+++|..+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  444 34568898887776654   345778999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc--chHHHHHHHHHHcCCc----EEEEc
Q 023316          174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW--TIATQARAYAKAMKAT----LFFSS  246 (284)
Q Consensus       174 ~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~--~~~~~~~~~a~~~~~~----~~~~S  246 (284)
                      ++++|||++++ .+|+++..|+.++.......|.|+||||+|+    .+....  ...+.+..+++.++++    ++++|
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDV----SDEKQRKACMSKITKELLNKRGFPAIRDYHFVN  157 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGG----CCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCc----ccchhhHHHHHHHHHHHHHhcCCcchhheEEEe
Confidence            99999999997 5899999999999887655555899999996    222111  1134456677777887    99999


Q ss_pred             CCCCc-CHHHHHHHHHHHHhCCccc
Q 023316          247 ATHNI-NVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       247 a~~~~-~v~~lf~~l~~~i~~~~~~  270 (284)
                      |++|. +++++++.+.+.+.+.++.
T Consensus       158 a~~~~~~~~~l~~~i~~~~~~~~~~  182 (184)
T 2zej_A          158 ATEESDALAKLRKTIINESLNFKIR  182 (184)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHCC---
T ss_pred             cccCchhHHHHHHHHHHHHhccccC
Confidence            99996 9999999999998876553

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=1.7e-29  Score=202.95  Aligned_cols=159  Identities=18%  Similarity=0.199  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+++|++|||||||+++|+++.+....+|.+..  ...+..+  .+.+++|||+|++++..++..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999998887666777743  3444444  4678899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ++++++|+.+..|+..+....  ...|.++|+||+|+...   ...... ......+++..+++++++||++|.|++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999999998886532  24455899999997321   111111 111111222345679999999999999999


Q ss_pred             HHHHHHHhC
Q 023316          258 KFIMAKLFN  266 (284)
Q Consensus       258 ~~l~~~i~~  266 (284)
                      +++.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999988753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=5.1e-29  Score=201.36  Aligned_cols=161  Identities=18%  Similarity=0.238  Sum_probs=127.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||+++|.++.+....+|++...  ..+.+++  +.+.+|||+|++++..++..+++++|++|+||
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~   82 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   82 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            6899999999999999999999998876667777543  4555664  66889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |++++++|+++..|+..+....  ...|.++|+||+|+...   ...... ......+++..+++++++||++|.|++++
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (171)
T 1upt_A           83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA---MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  159 (171)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC---CCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence            9999999999999988876542  34455899999997321   111111 11112233445678999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |+++.+.+.+.
T Consensus       160 ~~~l~~~i~~~  170 (171)
T 1upt_A          160 MEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhc
Confidence            99999988653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=4.1e-29  Score=207.13  Aligned_cols=163  Identities=15%  Similarity=0.187  Sum_probs=125.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-c-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i  175 (284)
                      ...+||+|+|++|||||||+++|+++.+.. . .+|++....  .+.  +..+.+.+|||+|++++..++..+++++|++
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            347899999999999999999999999875 3 457774433  333  4457788999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC---------CCCceEEEEeCCCCCCCCCCCcccch-HHH-HHHHHHHcCCcEEE
Q 023316          176 LFMFDLTSRCTLNSIVGWYSEARKWN---------QTAIPILIGTKFDDFVRLPPDLQWTI-ATQ-ARAYAKAMKATLFF  244 (284)
Q Consensus       176 ilv~d~~~~~s~~~~~~~~~~l~~~~---------~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~-~~~~a~~~~~~~~~  244 (284)
                      |+|||++++++|+++..|+..+....         ...|.|||+||+||...   ...... ... ...+++..++++++
T Consensus        91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA---KTAAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC---CCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC---CCHHHHHHHhcchhhccCCeeEEEE
Confidence            99999999999999999998886541         14455899999997322   111111 111 12223557889999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCC
Q 023316          245 SSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +||++|.||+++|++|++.+.+.
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             eeCCCccCHHHHHHHHHHHHHHH
Confidence            99999999999999999988654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.7e-29  Score=204.93  Aligned_cols=161  Identities=15%  Similarity=0.171  Sum_probs=123.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|+++++....+|.+.+  ...+.+++  +.+++|||+|++++..++..+++++|++|+|
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            3689999999999999999999998887555677744  44566665  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI  251 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-----~~~~~~~~~~Sa~~~~  251 (284)
                      ||++++++|+++..|+..+.+..  ...|.++|+||+|+..    ..   ..++..+..     +..+++++++||++|.
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  163 (187)
T 1zj6_A           91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE----CM---TVAEISQFLKLTSIKDHQWHIQACCALTGE  163 (187)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT----CC---CHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC----CC---CHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence            99999999999999999987652  3445589999999732    11   122222222     2346789999999999


Q ss_pred             CHHHHHHHHHHHHhCCccc
Q 023316          252 NVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~~~~~  270 (284)
                      |++++|+++++.+...+..
T Consensus       164 gi~~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          164 GLCQGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             THHHHHHHHHHHHCC----
T ss_pred             CHHHHHHHHHHHHHHHhhh
Confidence            9999999999998766543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=2.5e-29  Score=206.17  Aligned_cols=154  Identities=15%  Similarity=0.205  Sum_probs=122.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|+++++....+|.|.+.  ..+.+++  +.+.+|||+|++++..++..+++++|++|+|
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   95 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   95 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            36999999999999999999999998855555777554  4566666  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI  251 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-----~~~~~~~~~~Sa~~~~  251 (284)
                      ||++++++|+++..|+..+.+.  ....|.|+|+||+||...    .   ..++..+..     +..+++++++||++|.
T Consensus        96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  168 (181)
T 2h17_A           96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC----M---TVAEISQFLKLTSIKDHQWHIQACCALTGE  168 (181)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC----C---CHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC----C---CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            9999999999999999888764  234455899999997321    1   112222221     2345689999999999


Q ss_pred             CHHHHHHHHHHH
Q 023316          252 NVNKIFKFIMAK  263 (284)
Q Consensus       252 ~v~~lf~~l~~~  263 (284)
                      |++++|+++++.
T Consensus       169 gi~~l~~~l~~~  180 (181)
T 2h17_A          169 GLCQGLEWMMSR  180 (181)
T ss_dssp             THHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=1.1e-28  Score=205.79  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=119.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|.++++....+|.+.+  ...+.+++  +.+++|||+|+++++.++..+++++|++|+|
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL   99 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence            3689999999999999999999998876555677765  35667777  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-----------------cC
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-----------------MK  239 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-----------------~~  239 (284)
                      ||++++++|+++..|+.++.+..  .+.|.++|+||+|+..       ....+++.+++..                 .+
T Consensus       100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1f6b_A          100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-------AISEERLREMFGLYGQTTGKGSVSLKELNARP  172 (198)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-------CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-------cCCHHHHHHHhCcccccccccccccccccCce
Confidence            99999999999999999887642  3445589999999631       1224555555542                 34


Q ss_pred             CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          240 ATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       240 ~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +++++|||++|.|++++|+++.+.+
T Consensus       173 ~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          173 LEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHhc
Confidence            6799999999999999999997643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=202.24  Aligned_cols=157  Identities=15%  Similarity=0.166  Sum_probs=124.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC-CC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ..+||+|+|++|||||||+++|++.. +. ...+|++  +....+.+++  +.+.+|||+|++++..++..+++++|++|
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            36999999999999999999999988 44 4445666  4445666665  56889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcC
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~~~Sa  247 (284)
                      +|||++++++|+++..|+..+....    ...|.|+|+||+|+..    .   ...++..+++.     ..+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa  168 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD----A---VTSVKVSQLLCLENIKDKPWHICASDA  168 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT----C---CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc----C---CCHHHHHHHhChhhccCCceEEEEccC
Confidence            9999999999999999999887753    2445589999999731    1   11233444442     23678999999


Q ss_pred             CCCcCHHHHHHHHHHHHhC
Q 023316          248 THNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~  266 (284)
                      ++|.|++++|+++.+.+.+
T Consensus       169 ~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          169 IKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTTBTHHHHHHHHHHHC--
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999987743

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=2.7e-29  Score=207.37  Aligned_cols=161  Identities=16%  Similarity=0.219  Sum_probs=124.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...+|++.++.  .+...  .+.+.+|||+|++++..++..+++++|++|+
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            4799999999999999999999999887 55668887764  33334  4678899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      |||++++++++.+..|+..+...  ....|.++|+||+|+...   ...... ......++...+++++++||++|.|++
T Consensus        97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC---CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            99999999999999999888664  234455899999997321   111110 111111122345689999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023316          255 KIFKFIMAKLFN  266 (284)
Q Consensus       255 ~lf~~l~~~i~~  266 (284)
                      ++|+++.+.+..
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=3.1e-28  Score=201.61  Aligned_cols=154  Identities=14%  Similarity=0.139  Sum_probs=124.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|.++++....+|.+.+  ...+.+++  +.+.+|||+|+++++.++..+++++|++|+|
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   97 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   97 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            4679999999999999999999999887655677764  45667777  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH------------cCCcEEE
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------------MKATLFF  244 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~------------~~~~~~~  244 (284)
                      ||++++++|+++..|+..+.+..  ...|.++|+||+|+..       ....+++.+++..            .++++++
T Consensus        98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T 1m2o_B           98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-------AVSEAELRSALGLLNTTGSQRIEGQRPVEVFM  170 (190)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-------CCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred             EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-------CCCHHHHHHHhCCccccccccccccceEEEEE
Confidence            99999999999999999887642  3445589999999732       1223444444332            3568999


Q ss_pred             EcCCCCcCHHHHHHHHHHH
Q 023316          245 SSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~  263 (284)
                      +||++|.|++++|+++++.
T Consensus       171 ~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          171 CSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CBTTTTBSHHHHHHHHHTT
T ss_pred             eECCcCCCHHHHHHHHHhh
Confidence            9999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.96  E-value=1.4e-27  Score=198.94  Aligned_cols=164  Identities=26%  Similarity=0.462  Sum_probs=141.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||++++.+..+. ...+|+|.++....+.++|..+.+.+|||+|++++..++..+++.++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            4689999999999999999999999887 555788889888899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||+++..+++++..|+..+........| ++|+||+||.    +. .....++++.++...++.++++||+++.|++++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~----~~-~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l  158 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR----HL-RAVPTDEARAFAEKNNLSFIETSALDSTNVEEA  158 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc----cc-cCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999988776544444 7999999962    11 222356788999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |+++.+.+.+.
T Consensus       159 ~~~l~~~~~~~  169 (199)
T 2f9l_A          159 FKNILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=8.6e-29  Score=205.32  Aligned_cols=162  Identities=16%  Similarity=0.195  Sum_probs=120.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ...+||+++|++|||||||+++|+++++....+|.+..  ...+..++  +.+.+|||+|++++..++..+++++|++|+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  102 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF  102 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            34699999999999999999999998887656677743  34555554  678899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      |||++++++|+.+..|+..+....  ...|.++|+||+|+.+.   ...... ......+++..+++++++||++|.|++
T Consensus       103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            999999999999999998886542  24455899999997321   110111 111111222345679999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023316          255 KIFKFIMAKLFN  266 (284)
Q Consensus       255 ~lf~~l~~~i~~  266 (284)
                      ++|+++++.+.+
T Consensus       180 ~l~~~l~~~i~~  191 (192)
T 2b6h_A          180 DGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=1.4e-27  Score=197.87  Aligned_cols=162  Identities=25%  Similarity=0.423  Sum_probs=142.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||++++.+..+. ...+|++.++....+.++|..+.+++||++|++++..++..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            34799999999999999999999999887 66679999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||+++..+|+++..|+..+........+ ++++||+||.    +. .....++++.++...++.++++||+++.|+++
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~----~~-~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR----HL-RAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999988776544444 7999999962    11 22236778899999999999999999999999


Q ss_pred             HHHHHHHHH
Q 023316          256 IFKFIMAKL  264 (284)
Q Consensus       256 lf~~l~~~i  264 (284)
                      +|+.+.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998876

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=4e-29  Score=205.31  Aligned_cols=157  Identities=16%  Similarity=0.211  Sum_probs=122.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|.++.+....+|.|.+  ...+.+++  +.+++|||+|++.+..++..+++++|++++|
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   90 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            3689999999999999999999998765555677744  34566664  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHH-H----HHHcCCcEEEEcCCCCc
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARA-Y----AKAMKATLFFSSATHNI  251 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~----a~~~~~~~~~~Sa~~~~  251 (284)
                      ||++++++|+++..|+..+...  ....|.++|+||+|+..    ...   .++..+ +    +...+++++++||++|.
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  163 (181)
T 1fzq_A           91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT----AAP---ASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (181)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT----CCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc----CCC---HHHHHHHhCchhccCCceEEEEccCCCCC
Confidence            9999999999999998887543  23445589999999632    111   111211 1    12235689999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023316          252 NVNKIFKFIMAKLFN  266 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~  266 (284)
                      |++++|+++++.+.+
T Consensus       164 gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          164 GVQDGMNWVCKNVNA  178 (181)
T ss_dssp             THHHHHHHHHHTC--
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=1.4e-29  Score=225.07  Aligned_cols=168  Identities=16%  Similarity=0.168  Sum_probs=131.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCC----cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---cccccccCCcE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA  174 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---~~~~~~~~ad~  174 (284)
                      ||+++|+.|||||||++++.++.+..    ..+|+|.++..    ++ ..+.+++|||+|||+|+.   +++.||+++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            79999999999999999988765442    24577877653    23 458899999999999975   46899999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc-----ccchHHHHHHHHHH----cCCcEE
Q 023316          175 ILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-----QWTIATQARAYAKA----MKATLF  243 (284)
Q Consensus       175 iilv~d~~~~--~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~a~~----~~~~~~  243 (284)
                      +|+|||++++  ++++.+..|++++.+..++.|.+|+|||+||   .+++.     +.+..++++++|+.    ++++|+
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL---~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~  152 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG---LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY  152 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS---SCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc---CchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence            9999999998  3344444556666666666566899999997   22221     22336777888886    689999


Q ss_pred             EEcCCCCcCHHHHHHHHHHHHhCCccccccccCCC
Q 023316          244 FSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIG  278 (284)
Q Consensus       244 ~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~  278 (284)
                      +|||++ +||.++|..+++.+++.....|..++.-
T Consensus       153 eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~  186 (331)
T 3r7w_B          153 LTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNL  186 (331)
T ss_dssp             CCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGG
T ss_pred             EeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999997 6999999999999999888888776543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.1e-27  Score=214.08  Aligned_cols=167  Identities=23%  Similarity=0.329  Sum_probs=140.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|+++.+...+ +|++.. ....+.+++..+.+++|||+|++.+..++..+++.+|++|+|
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            489999999999999999999999888444 455544 456778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023316          179 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATH  249 (284)
Q Consensus       179 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~  249 (284)
                      ||++++.+|+++. .|+..+.......|.|+|+||+|+.....       .....+..+++..+++..++ +++++||++
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  313 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  313 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999997 89999988877666689999999621100       00122347788999999997 999999999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023316          250 NINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~  267 (284)
                      |.|++++|+.+++.++..
T Consensus       314 ~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          314 QRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTHHHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=2.1e-28  Score=201.79  Aligned_cols=162  Identities=17%  Similarity=0.199  Sum_probs=126.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|.++++....+|++..  ...+.+++  +.+.+|||+|++++..++..+++++|++|+|
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   96 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV   96 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence            4689999999999999999999988887666677744  34555654  6688999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      ||++++++++++..|+..+....  ...|.++|+||+|+...   ...... .......++..+++++++||++|.|+++
T Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (189)
T 2x77_A           97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA---ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVE  173 (189)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhccCCceEEEEccCCCccCHHH
Confidence            99999999999999988886642  24455899999997321   111111 1111122233456899999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|+++.+.+.+.
T Consensus       174 l~~~l~~~i~~~  185 (189)
T 2x77_A          174 GMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988644

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.95  E-value=1.3e-27  Score=196.26  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=126.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|++++.....+|++.+  ...+.+++  +.+++|||+|++++..++..+++++|++++|
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   92 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4699999999999999999999998844666677744  34555654  6688999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCCCCc
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSATHNI  251 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----a~~~~~~~~~~Sa~~~~  251 (284)
                      ||++++++|+++..|+..+.+.  ....|.++|+||+|+..    ...   .++..+.     ++..+++++++||++|.
T Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (186)
T 1ksh_A           93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG----ALS---CNAIQEALELDSIRSHHWRIQGCSAVTGE  165 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT----CCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC----CCC---HHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence            9999999999999999888764  23445589999999732    111   1222221     12346789999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 023316          252 NVNKIFKFIMAKLFNL  267 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~~  267 (284)
                      |++++|+++.+.+.+.
T Consensus       166 gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          166 DLLPGIDWLLDDISSR  181 (186)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999988665

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=2.9e-30  Score=215.75  Aligned_cols=166  Identities=23%  Similarity=0.328  Sum_probs=136.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|+++.+... .+|++..+ ...+.+++..+.+++|||+|++++..++..+++++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4579999999999999999999999888744 44555443 556677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc-------ccchHHHHHHHHHHcCC-cEEEEcC
Q 023316          177 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-------QWTIATQARAYAKAMKA-TLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~a~~~~~-~~~~~Sa  247 (284)
                      +|||++++++|+++. .|+..+.......|.|+|+||+|+........       .....+++..+++..++ +++++||
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA  186 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
Confidence            999999999999997 89998887665555589999999732210000       12335677888888887 9999999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q 023316          248 THNINVNKIFKFIMAKL  264 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i  264 (284)
                      ++|.|++++|+++++.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.2e-28  Score=212.20  Aligned_cols=161  Identities=15%  Similarity=0.168  Sum_probs=124.9

Q ss_pred             ceeeEEEEEcCC---------CCChHHHHHHHhc---CCCC-Cccccc-ceeeeeEEEE--------------ECCeEEE
Q 023316           98 LVSLKISLLGDC---------QIGKTSFVVKYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIA  149 (284)
Q Consensus        98 ~~~~KI~llG~~---------~vGKSsLl~~l~~---~~~~-~~~~t~-~~~~~~~~~~--------------~~~~~~~  149 (284)
                      ...+||+|+|++         |||||||+++|++   +.+. ...+|+ +.++..+.+.              +++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            346999999999         9999999999999   5565 445555 6665544432              4678889


Q ss_pred             EEEEe-----------------------CCCCcCCccccccccc---------------------CCcEEEEEEeCCCh-
Q 023316          150 FSIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR-  184 (284)
Q Consensus       150 l~l~D-----------------------t~G~e~~~~~~~~~~~---------------------~ad~iilv~d~~~~-  184 (284)
                      +++||                       ++|+++|..++..+++                     ++|++|+|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       8899999999999988                     79999999999998 


Q ss_pred             -hhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHH
Q 023316          185 -CTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFI  260 (284)
Q Consensus       185 -~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~~~~~v~~lf~~l  260 (284)
                       +||+.+..|+..+.+.  ....|+|||+||+||    ..  .+.+ ++++++++. .+++++++||++|.||+++|+++
T Consensus       177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl----~~--~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE----GV--ERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGG----BC--HHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccc----cc--cHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence             9999999999998775  234555899999996    22  2222 577788877 48999999999999999999999


Q ss_pred             HHHHh
Q 023316          261 MAKLF  265 (284)
Q Consensus       261 ~~~i~  265 (284)
                      ++.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=5.1e-28  Score=197.93  Aligned_cols=157  Identities=20%  Similarity=0.237  Sum_probs=121.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||++++.++++....+|.+..  ...+.+++  +.+.+|||+|++++..++..+++++|++++|
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV   92 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            4699999999999999999999988876555677744  34556665  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI  251 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-----~~~~~~~~~~Sa~~~~  251 (284)
                      ||++++++++++..|+..+....  ...|.++|+||+|+...    .   ..++..+..     ...+++++++||++|.
T Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (183)
T 1moz_A           93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA----L---SASEVSKELNLVELKDRSWSIVASSAIKGE  165 (183)
T ss_dssp             EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC----C---CHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred             EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC----C---CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            99999999999999998887653  34455899999997321    1   122222222     1234579999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023316          252 NVNKIFKFIMAKLFN  266 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~  266 (284)
                      |++++|+++.+.+.+
T Consensus       166 gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          166 GITEGLDWLIDVIKE  180 (183)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=2.1e-27  Score=192.05  Aligned_cols=152  Identities=15%  Similarity=0.098  Sum_probs=116.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------cccccccc--
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK--  170 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------~~~~~~~~--  170 (284)
                      .+||+++|++|||||||+++|.+..+. ..+++++.+.....+.+++  ..+++|||+|++++.      .+...|++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            589999999999999999999998776 6667777777777777776  468899999999876      34466665  


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  250 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~  250 (284)
                      +++++++|+|+++.+   ....|+..+.+.  ..|.|+|+||+|+.    .  .+....++.++++.++++++++||++|
T Consensus        81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~~--~~p~ilv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~SA~~~  149 (165)
T 2wji_A           81 KPDLVVNIVDATALE---RNLYLTLQLMEM--GANLLLALNKMDLA----K--SLGIEIDVDKLEKILGVKVVPLSAAKK  149 (165)
T ss_dssp             CCSEEEEEEETTCHH---HHHHHHHHHHHT--TCCEEEEEECHHHH----H--HTTCCCCHHHHHHHHTSCEEECBGGGT
T ss_pred             CCCEEEEEecCCchh---HhHHHHHHHHhc--CCCEEEEEEchHhc----c--ccChhhHHHHHHHHhCCCEEEEEcCCC
Confidence            899999999998854   345688777653  44558999999962    1  111112367788888999999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      .|++++|+++.+.+
T Consensus       150 ~~v~~l~~~l~~~~  163 (165)
T 2wji_A          150 MGIEELKKAISIAV  163 (165)
T ss_dssp             BSHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.94  E-value=5.7e-27  Score=196.96  Aligned_cols=160  Identities=14%  Similarity=0.120  Sum_probs=115.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCe-EEEEEEEeCCCCcCCcc-cccccccCCcEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAIL  176 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~e~~~~-~~~~~~~~ad~ii  176 (284)
                      ..+||+++|++|||||||+++|+++.+...+++++.++..  +.+++. .+.+++|||+|++++.. ++..|++++|++|
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i   83 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV   83 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence            4689999999999999999999999988777777766654  566644 57899999999999987 8889999999999


Q ss_pred             EEEeCCChh-hHHHHHH-HHHHHHhH--CC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH---------------
Q 023316          177 FMFDLTSRC-TLNSIVG-WYSEARKW--NQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK---------------  236 (284)
Q Consensus       177 lv~d~~~~~-s~~~~~~-~~~~l~~~--~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~---------------  236 (284)
                      +|||+++.. ++..+.. |.+.+...  .. ..|.++|+||+||...   .......+.......               
T Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA---KSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC---CCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc---ccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999854 4666554 44444432  22 3444799999997322   111111122221111               


Q ss_pred             ------------------Hc--CCcEEEEcCCCC------cCHHHHHHHHHHH
Q 023316          237 ------------------AM--KATLFFSSATHN------INVNKIFKFIMAK  263 (284)
Q Consensus       237 ------------------~~--~~~~~~~Sa~~~------~~v~~lf~~l~~~  263 (284)
                                        .+  +++|++|||++|      .||+++|+++.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                              11  668999999999      9999999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=4.6e-27  Score=209.20  Aligned_cols=165  Identities=17%  Similarity=0.170  Sum_probs=131.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--C--cccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-----ccccccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--R--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACK  170 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-----~~~~~~~~~  170 (284)
                      .+||+++|++|||||||+++|+++...  .  ..+|.+.++.  .+.+++ .+.+++|||+|++++     ..++..+++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            689999999999999999999988433  2  2236666554  444544 578999999999998     788999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHH---HHHHHhHCCCCceEEEEeCCCCCCCCCCC-ccc----chHHHHHHHHHHcC---
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGW---YSEARKWNQTAIPILIGTKFDDFVRLPPD-LQW----TIATQARAYAKAMK---  239 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~---~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-~~~----~~~~~~~~~a~~~~---  239 (284)
                      ++|++|+|||++++++|+++..|   +..+....++.|.++|+||+|+    .+. .+.    ...+++.++++.+|   
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl----~~~~~r~~~~~v~~~~~~~~~~~~g~~~  155 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL----VQLDKREELFQIMMKNLSETSSEFGFPN  155 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG----SCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccc----cchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999766   4455555556666899999996    221 222    34678899999997   


Q ss_pred             CcEEEEcCCCCcCHHHHHHHHHHHHhCCccccc
Q 023316          240 ATLFFSSATHNINVNKIFKFIMAKLFNLPWTVK  272 (284)
Q Consensus       240 ~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~  272 (284)
                      ++++++||++ .++.++|..+++.+.......+
T Consensus       156 ~~~~~tSa~~-~~i~e~~~~iv~~li~~~~~le  187 (307)
T 3r7w_A          156 LIGFPTSIWD-ESLYKAWSQIVCSLIPNMSNHQ  187 (307)
T ss_dssp             CEEEECCTTS-SHHHHHHHHHHHTTCSCHHHHH
T ss_pred             eEEEEeeecC-ChHHHHHHHHHHHHcCCHHHHH
Confidence            7999999999 8999999999998876654443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=4.9e-27  Score=210.94  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=119.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+|+|++|||||||+++|.++.+....+|++.++.  .+...+  +.+.||||+|++.|..++..+++.+|++|+|
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            468999999999999999999999988766677776654  344444  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      ||++++++|+.+..|+..+....  ...|.|||+||+|+...   ...... .......++..+++++++||++|.||++
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc---cCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999998887775543  24444799999996321   111001 1111111223356799999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|++|++.+.+.
T Consensus       317 l~~~l~~~l~~~  328 (329)
T 3o47_A          317 GLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=1e-25  Score=183.18  Aligned_cols=158  Identities=9%  Similarity=0.046  Sum_probs=118.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|+++.+. ...++++.++....+.+++..  +.+|||+|++++..++..++..+|++|+
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            4689999999999999999999999888 556677777777788888865  5699999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-------HcC--CcEEEEcCC
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AMK--ATLFFSSAT  248 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-------~~~--~~~~~~Sa~  248 (284)
                      |||+++....+... ++..+..  ...|.++|+||+|+.    ...    .++.....+       .++  ++++++||+
T Consensus        85 v~d~~~~~~~~~~~-~l~~~~~--~~~p~ilv~nK~Dl~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           85 VVAADDGVMPQTVE-AINHAKA--ANVPIIVAINKMDKP----EAN----PDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEETTCCCCHHHHH-HHHHHGG--GSCCEEEEEETTTSS----CSC----HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEECCCCCcHHHHH-HHHHHHh--CCCCEEEEEECccCC----cCC----HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            99999854332222 2222221  244558999999962    211    111222222       222  589999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCcc
Q 023316          249 HNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      +|.|++++|+++++.+.....
T Consensus       154 ~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHhhhhhcc
Confidence            999999999999988765433

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=5.5e-26  Score=186.71  Aligned_cols=157  Identities=15%  Similarity=0.105  Sum_probs=124.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------cccccccc-
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-  170 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------~~~~~~~~-  170 (284)
                      ..+||+++|++|||||||+++|++..+. ..+++++.+.....+.+++  ..+.+|||+|++.+.      .+...|++ 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            4789999999999999999999998765 6667777777777777776  567899999999885      34566664 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          171 -DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       171 -~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                       .++++++|+|.++   ++....|+..+..  ...|.|+|+||+|+.    .  .+...+++..+++.++++++++||++
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLA----K--SLGIEIDVDKLEKILGVKVVPLSAAK  152 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHH----H--HTTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhcc----c--cccchHHHHHHHHHhCCCeEEEEecC
Confidence             5999999999875   5667788888765  234558999999962    1  11112356778888899999999999


Q ss_pred             CcCHHHHHHHHHHHHhCCc
Q 023316          250 NINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~~  268 (284)
                      +.|++++|+++++.+.+..
T Consensus       153 ~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          153 KMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             TBSHHHHHHHHHHHHTTC-
T ss_pred             CCCHHHHHHHHHHHHHhcc
Confidence            9999999999999887654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=1e-26  Score=189.55  Aligned_cols=152  Identities=18%  Similarity=0.199  Sum_probs=117.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc--------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~--------~~~~  169 (284)
                      .+||+++|++|||||||+++|.+..+.  ..+++++.++....+.+++..  +.+|||+|++++....        ..++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            579999999999999999999988753  556677778888888888755  6799999998754221        2368


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      +.+|++++|||++++.+++. ..|++.+.+.....+ .|+|+||+||.+.   ...         +++..+++++++||+
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~---------~~~~~~~~~~~~SA~  148 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGE---TLG---------MSEVNGHALIRLSAR  148 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCC---CCE---------EEEETTEEEEECCTT
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcc---hhh---------hhhccCCceEEEeCC
Confidence            99999999999999988764 578888877654444 4899999996211   111         122246789999999


Q ss_pred             CCcCHHHHHHHHHHHHhC
Q 023316          249 HNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~  266 (284)
                      +|.|++++|+++.+.+..
T Consensus       149 ~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          149 TGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TCTTHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHhhh
Confidence            999999999999887643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.93  E-value=2.4e-25  Score=189.35  Aligned_cols=166  Identities=17%  Similarity=0.122  Sum_probs=118.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCc------C----Ccccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS------R----SFDHVPI  167 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e------~----~~~~~~~  167 (284)
                      ..+||+|+|++|||||||+++|+++.+. ...+.+..++....+..++  ..+.+|||+|+.      +    +.. ...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~  104 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA  104 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence            3689999999999999999999998876 4444444444444444454  568899999994      3    222 233


Q ss_pred             cccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEE
Q 023316          168 ACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLF  243 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~  243 (284)
                      ++..+|++|+|||++++.+|+  ....|+..+.......|.|+|+||+|+...  ........+.+..++...+  ++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHHHHHHHHHhcCCCceEE
Confidence            578899999999999998875  234677777665445566899999997321  0111112345677888887  8999


Q ss_pred             EEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          244 FSSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       244 ~~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      ++||++|.||+++|++++..+.+...
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998875543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=2.5e-26  Score=219.03  Aligned_cols=165  Identities=20%  Similarity=0.308  Sum_probs=125.0

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEE------EEE--CCeEEEEEEEeCCCCcCCcccccc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVPI  167 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~------~~~--~~~~~~l~l~Dt~G~e~~~~~~~~  167 (284)
                      ....+||+++|++|||||||+++++++.+. ...+|+|.++..+.      +.+  ++..+.+.+|||+|++.+..++..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            455799999999999999999999999987 55568888877542      122  344678999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA  247 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa  247 (284)
                      |++++|++|+|||+++.   +.+..|+..+..+.++.|.|+|+||+|+.    +. .....++++.++...+++++++||
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~vSA  189 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDEN----PS-YNIEQKKINERFPAIENRFHRISC  189 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTC----TT-CCCCHHHHHHHCGGGTTCEEECCC
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcc----cc-cccCHHHHHHHHHhcCCceEEEec
Confidence            99999999999998765   56678999999988777778999999962    22 222366788888888999999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCcc
Q 023316          248 THNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      ++|.|++++|+.+.+.+.+.+.
T Consensus       190 ~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          190 KNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             -----CTTHHHHHHHHHTCTTS
T ss_pred             CcccCHHHHHHHHHHHHhcccc
Confidence            9999999999999999987654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.92  E-value=1e-24  Score=174.24  Aligned_cols=149  Identities=19%  Similarity=0.213  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-------cccccccccC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------FDHVPIACKD  171 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-------~~~~~~~~~~  171 (284)
                      .||+++|++|||||||+++|.+..+.  ...++++.+.....+..++.  .+.+|||+|++.+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999998864  45556666777777777775  5779999999884       3345567899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN  250 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~  250 (284)
                      +|++++|||+++..+...  .|+..+... ...|.++|+||+|+.    +.     .+++.+++ ..++ +++++||++|
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~-~~~p~ilv~nK~Dl~----~~-----~~~~~~~~-~~~~~~~~~~Sa~~~  146 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR-KGKPVILVATKVDDP----KH-----ELYLGPLY-GLGFGDPIPTSSEHA  146 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH-HTCCEEEEEECCCSG----GG-----GGGCGGGG-GGSSCSCEECBTTTT
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh-cCCCEEEEEECcccc----cc-----hHhHHHHH-hCCCCCeEEEecccC
Confidence            999999999998655432  222222221 244558999999962    11     12334455 5677 8999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      .|++++|+++++.+
T Consensus       147 ~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          147 RGLEELLEAIWERL  160 (161)
T ss_dssp             BSHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHhC
Confidence            99999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.91  E-value=9.3e-25  Score=180.38  Aligned_cols=155  Identities=17%  Similarity=0.208  Sum_probs=106.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCC----------CcCCcccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI  167 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G----------~e~~~~~~~~  167 (284)
                      ..+||+|+|++|||||||+++|++..+. ...++.+.+.......+++   .+.+|||+|          ++.+..++..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            4689999999999999999999998865 3334555444444444544   478999999          6777777888


Q ss_pred             cccCC---cEEEEEEeCCChhhHHHHH--HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc-hHHHHHH-HHHHcCC
Q 023316          168 ACKDA---VAILFMFDLTSRCTLNSIV--GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT-IATQARA-YAKAMKA  240 (284)
Q Consensus       168 ~~~~a---d~iilv~d~~~~~s~~~~~--~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~-~~~~~~~-~a~~~~~  240 (284)
                      +++.+   |++++|+|++++.++.+..  .|+..     ...|.++|+||+|+.    +..... ..+++.+ ++...++
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKI----PKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGS----CGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccC----ChHHHHHHHHHHHHHHcccCCC
Confidence            88777   9999999999988877643  44332     244558999999962    221111 1233333 3334467


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          241 TLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       241 ~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +++++||++|.|++++|+++.+.+.
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999988763

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.91  E-value=8.9e-24  Score=188.03  Aligned_cols=172  Identities=13%  Similarity=0.092  Sum_probs=132.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----------cccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHVP  166 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----------~~~~  166 (284)
                      ..-.|+++|.+|||||||+|+|++.++.  ...+.++.+.....+..+ ....+.+|||+|+.++.          ....
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~   87 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK   87 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence            4678999999999999999999999876  334433334333344444 13567899999997755          4556


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEE
Q 023316          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFF  244 (284)
Q Consensus       167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~  244 (284)
                      .+++++|++|+|+|+++..++++...|++.+...  ..|.|+|+||+|+.   .  ......+....+++.++  .++++
T Consensus        88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~---~--~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKI---G--PAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGS---S--SGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCC---C--CHHHHHHHHHHHHHhccCCCeEEE
Confidence            7889999999999999999999988888888763  34558999999962   1  12334666777888876  78999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCccccccccCCC
Q 023316          245 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIG  278 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~  278 (284)
                      +||++|.|++++|+++...+.+.++........+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td  194 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPEGEPLFPEDMITD  194 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBC
T ss_pred             EeCCCCCCHHHHHHHHHHhCccCCCCCCcccccC
Confidence            9999999999999999999988776655544433

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.91  E-value=4.9e-25  Score=181.01  Aligned_cols=153  Identities=15%  Similarity=0.167  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCC-----------CcCCccccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA  168 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G-----------~e~~~~~~~~~  168 (284)
                      +||+++|++|||||||+++|+++.+. ...++++.+  ...+.++    .+.+|||+|           ++.+..++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            69999999999999999999999887 444544433  3344444    578999999           66677778888


Q ss_pred             ccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH
Q 023316          169 CKD-AVAILFMFDLTSRCTLNSI-VGWYSE--------ARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK  236 (284)
Q Consensus       169 ~~~-ad~iilv~d~~~~~s~~~~-~~~~~~--------l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~  236 (284)
                      ++. ++++++||++.+..+++++ ..|...        +...  ....|.++|+||+|+.    ...    .++++++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~----~~~~~~~~~  147 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI----KNV----QEVINFLAE  147 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC----SCH----HHHHHHHHH
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc----CcH----HHHHHHHHH
Confidence            887 9999999999999999887 677653        2221  2344558999999962    211    556778888


Q ss_pred             HcCCc-------EEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          237 AMKAT-------LFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       237 ~~~~~-------~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      .++++       ++++||++|.|++++|+++++.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            88874       69999999999999999999988654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.91  E-value=5e-24  Score=175.48  Aligned_cols=157  Identities=13%  Similarity=0.129  Sum_probs=114.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCC----------CcCCccccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPIA  168 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G----------~e~~~~~~~~~  168 (284)
                      ..+||+|+|++|||||||+++|++..+....++.+.+........+.   .+.+|||+|          ++.+..++..+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   98 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDY   98 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence            46899999999999999999999998654444555444433333333   366999999          66677777778


Q ss_pred             ccCC---cEEEEEEeCCChhhH--HHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcE
Q 023316          169 CKDA---VAILFMFDLTSRCTL--NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATL  242 (284)
Q Consensus       169 ~~~a---d~iilv~d~~~~~s~--~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~  242 (284)
                      ++.+   +++++|+|.++..+.  ..+..|+...     ..|.++|+||+|+   .++.......++++.++...+ +++
T Consensus        99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 3pqc_A           99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDK---VKMSERAKKLEEHRKVFSKYGEYTI  170 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGG---SCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred             HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhc---CChHHHHHHHHHHHHHHhhcCCCce
Confidence            7766   999999999876443  3344555543     4455899999996   222222333566777777744 799


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          243 FFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       243 ~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      +++||++|.||+++|+++.+.+.+
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999988753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.91  E-value=4.5e-24  Score=185.30  Aligned_cols=154  Identities=16%  Similarity=0.115  Sum_probs=120.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc------ccccc--
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--  169 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~------~~~~~--  169 (284)
                      ..+||+++|++|||||||+++|++..+. ..+++++.+.....+..++  ..+.+|||+|+..+...      ...|+  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            4689999999999999999999998876 6667666666666666655  56889999999988753      35666  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      ..+|++++|+|+++.++.   ..|...+.+.  ..|.|+|+||+|+.    .  .+....+...+++.+|++++++||++
T Consensus        82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~----~--~~~i~~~~~~l~~~lg~~vi~~SA~~  150 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEA----K--KTGMKIDRYELQKHLGIPVVFTSSVT  150 (258)
T ss_dssp             SCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHH----H--HTTCCBCHHHHHHHHCSCEEECCTTT
T ss_pred             cCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCC----C--ccchHHHHHHHHHHcCCCEEEEEeeC
Confidence            589999999999987653   3466666543  44558999999962    1  11112246788889999999999999


Q ss_pred             CcCHHHHHHHHHHHHh
Q 023316          250 NINVNKIFKFIMAKLF  265 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~  265 (284)
                      |.|++++|+++.+.+.
T Consensus       151 g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          151 GEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhh
Confidence            9999999999998775

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=5.5e-25  Score=204.76  Aligned_cols=249  Identities=15%  Similarity=0.145  Sum_probs=151.1

Q ss_pred             hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc------cccccccCCCCCCCCCcccc
Q 023316            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM   77 (284)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~   77 (284)
                      +..++..++.++...++.+|.+.++......+.+.++.....++++-++.....      .+..+....     +-+...
T Consensus        72 ~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~-----~~~iSA  146 (436)
T 2hjg_A           72 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGE-----PYPISG  146 (436)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCC-----CEECBT
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCC-----eEEEeC
Confidence            455666677788888899999988776655555555544444455544333211      111111100     000001


Q ss_pred             ccc--cccc----ccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEE
Q 023316           78 EAG--LVEL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIA  149 (284)
Q Consensus        78 ~~~--~~~~----~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~  149 (284)
                      ..|  ....    ............+...+||+++|++|||||||+|+|++.++.  ..+++++.+.....+.+++..  
T Consensus       147 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--  224 (436)
T 2hjg_A          147 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--  224 (436)
T ss_dssp             TTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--
T ss_pred             cCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--
Confidence            111  0000    000000001112234689999999999999999999998874  667777778877888888865  


Q ss_pred             EEEEeCCCCc----------CCccccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          150 FSIWDVGGDS----------RSFDHVP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       150 l~l~Dt~G~e----------~~~~~~~-~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      +.+|||+|+.          .|..+.. .+++.+|++|+|||++++.++++. .|+..+..  ...+.|+|+||+|+.  
T Consensus       225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~--  299 (436)
T 2hjg_A          225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAV--  299 (436)
T ss_dssp             EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGS--
T ss_pred             EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCC--
Confidence            7799999984          3433333 378899999999999999998875 57777654  234558999999973  


Q ss_pred             CCCCcccchHHHH----HHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          219 LPPDLQWTIATQA----RAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       219 ~~~~~~~~~~~~~----~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                        +.......+..    +.++...+++++++||++|.|++++|+.+.+.+.+
T Consensus       300 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          300 --DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             --CCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             --CcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence              22111111111    22333347899999999999999999999987764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=5.2e-24  Score=191.75  Aligned_cols=203  Identities=16%  Similarity=0.192  Sum_probs=142.6

Q ss_pred             HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceee----EEEEEcCCCCChHHHHH
Q 023316           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFVV  118 (284)
Q Consensus        43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----KI~llG~~~vGKSsLl~  118 (284)
                      .++++++.+|.+|.++.+..+++...     |..+..+...         ....-..++    +|+|+|.+|||||||++
T Consensus       111 ~~~~~~~~GG~gG~Gn~~f~~~~~~~-----p~~~~~g~~g---------~~~~~~leLk~la~V~lvG~~nvGKSTLln  176 (342)
T 1lnz_A          111 GQRAVIARGGRGGRGNSRFATPANPA-----PQLSENGEPG---------KERYIVLELKVLADVGLVGFPSVGKSTLLS  176 (342)
T ss_dssp             TCEEEEECCCCCCCCGGGSCBTTBSS-----CCCCCCCCCC---------CEEEEEEEEECCCCEEEESSTTSSHHHHHH
T ss_pred             CcEEEEeCCCCCccCccccccccccc-----cccccCCCCc---------chhhHhhhhhhcCeeeeeCCCCCCHHHHHH
Confidence            46789999998888775544433322     1111111111         000111123    58899999999999999


Q ss_pred             HHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCc----CCcccccccccC---CcEEEEEEeCCC---hhhH
Q 023316          119 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACKD---AVAILFMFDLTS---RCTL  187 (284)
Q Consensus       119 ~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e----~~~~~~~~~~~~---ad~iilv~d~~~---~~s~  187 (284)
                      +|++.++. ..++.++.+.....+.+++. ..+.+|||+|+.    .+..+...|++.   ++++|+|+|+++   ++++
T Consensus       177 ~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~  255 (342)
T 1lnz_A          177 VVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY  255 (342)
T ss_dssp             HSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH
T ss_pred             HHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH
Confidence            99988765 55553333333345555542 357899999963    455666777654   999999999999   8899


Q ss_pred             HHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHHH
Q 023316          188 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       188 ~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      +++..|+.++..+.+   ..|.|+|+||+|+    ...     .+...++++.++  .+++++||++++|++++|++|.+
T Consensus       256 ~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl----~~~-----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~  326 (342)
T 1lnz_A          256 DDYLTINQELSEYNLRLTERPQIIVANKMDM----PEA-----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN  326 (342)
T ss_dssp             HHHHHHHHHHHHSCSSTTTSCBCBEEECTTS----TTH-----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEEECccC----CCC-----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHH
Confidence            999999999998753   4455899999996    211     234566777776  68999999999999999999999


Q ss_pred             HHhCCcc
Q 023316          263 KLFNLPW  269 (284)
Q Consensus       263 ~i~~~~~  269 (284)
                      .+.+.++
T Consensus       327 ~l~~~~~  333 (342)
T 1lnz_A          327 QLENTPE  333 (342)
T ss_dssp             HHTSCCC
T ss_pred             HHhhCcc
Confidence            9876554

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.90  E-value=3.9e-24  Score=185.53  Aligned_cols=150  Identities=11%  Similarity=0.065  Sum_probs=118.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc----------cccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC  169 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~----------~~~~~~  169 (284)
                      .||+++|.+|||||||+|+|++..+. ...++++.+.....+.+++.  .+.+|||+|+..+..          +...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998766 67788888888888888876  578999999998764          456677


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023316          170 --KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA  247 (284)
Q Consensus       170 --~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa  247 (284)
                        ..+|++|+|+|+++.+++..+..|+.++     ..|.|+|+||+|+.    .  ..........+++.++++++++||
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~----~--~~~~~~~~~~l~~~lg~~vi~~SA  148 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLFEL-----GKPVVVALNMMDIA----E--HRGISIDTEKLESLLGCSVIPIQA  148 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHTTS-----CSCEEEEEECHHHH----H--HTTCEECHHHHHHHHCSCEEECBG
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHHHc-----CCCEEEEEEChhcC----C--cCCcHHHHHHHHHHcCCCEEEEEC
Confidence              8999999999999977665544443321     44558999999962    1  111112345677888999999999


Q ss_pred             CCCcCHHHHHHHHHHH
Q 023316          248 THNINVNKIFKFIMAK  263 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~  263 (284)
                      ++|.|++++|+++.+.
T Consensus       149 ~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          149 HKNIGIPALQQSLLHC  164 (256)
T ss_dssp             GGTBSHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999876

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.90  E-value=6.6e-24  Score=185.59  Aligned_cols=152  Identities=16%  Similarity=0.065  Sum_probs=115.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------cccccccc--
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK--  170 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------~~~~~~~~--  170 (284)
                      .+||+++|++|||||||+++|++..+. ..+++++.+.  +...++. ...+.+|||+|++.+.      .+.+.|+.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            579999999999999999999998744 6666544443  3444554 5678899999999886      35566775  


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  250 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~  250 (284)
                      .+|++|+|||+++.+++   ..|...+.+  ...|.|+|+||+|+.    .  .+....+...+++.++++++++||++|
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~----~--~~~~~~~~~~l~~~lg~~vi~~SA~~g  148 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVL----D--GQGKKINVDKLSYHLGVPVVATSALKQ  148 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHH----H--HTTCCCCHHHHHHHHTSCEEECBTTTT
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhC----C--cCCcHHHHHHHHHHcCCCEEEEEccCC
Confidence            69999999999886543   456666655  244558999999962    1  111123467788889999999999999


Q ss_pred             cCHHHHHHHHHHHHh
Q 023316          251 INVNKIFKFIMAKLF  265 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~  265 (284)
                      .|++++|+++++.+.
T Consensus       149 ~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          149 TGVDQVVKKAAHTTT  163 (272)
T ss_dssp             BSHHHHHHHHHHSCT
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999988653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=8.7e-24  Score=197.76  Aligned_cols=254  Identities=13%  Similarity=0.118  Sum_probs=157.4

Q ss_pred             hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc------cccccccCCCCCCCCCcccc
Q 023316            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM   77 (284)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~   77 (284)
                      +..++..++..++..++.+|.+.++.....-+.+.++.....++++-++.....      .+..+.....-..|+.....
T Consensus        92 ~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A           92 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTT
T ss_pred             HHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccc
Confidence            455666677778888899999998888777777777765555565555433211      11111111000001000000


Q ss_pred             ccccc-ccccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEe
Q 023316           78 EAGLV-ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWD  154 (284)
Q Consensus        78 ~~~~~-~~~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D  154 (284)
                      ....- ..................+||+++|++|||||||+++|++.+..  ..+++++.+.....+.+++.  .+.+||
T Consensus       172 v~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~D  249 (456)
T 4dcu_A          172 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVD  249 (456)
T ss_dssp             HHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETT
T ss_pred             hHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEE
Confidence            00000 00000000001122334789999999999999999999987643  67778888888788888886  577999


Q ss_pred             CCC----------CcCCcccccc-cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316          155 VGG----------DSRSFDHVPI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  223 (284)
Q Consensus       155 t~G----------~e~~~~~~~~-~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~  223 (284)
                      |+|          +++|..+... +++.+|++|+|+|+++..+.. ...|+..+..  ...+.|+|+||+|+.    +. 
T Consensus       250 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~----~~-  321 (456)
T 4dcu_A          250 TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAV----DK-  321 (456)
T ss_dssp             GGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGS----CC-
T ss_pred             CCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcC----CC-
Confidence            999          6667666554 789999999999998865533 2456665554  234558999999963    21 


Q ss_pred             ccchHHHHHHHHHHc-----CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          224 QWTIATQARAYAKAM-----KATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       224 ~~~~~~~~~~~a~~~-----~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      .....+++.+.++..     +++++++||++|.|++++|+++.+.+.+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          322 DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             CSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            122344555555544     58999999999999999999999877544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.89  E-value=8.4e-24  Score=185.19  Aligned_cols=155  Identities=14%  Similarity=0.048  Sum_probs=118.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc----------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPIA  168 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~----------~~~~  168 (284)
                      .+||+++|.+|||||||+|+|++..+. ...++++.+.....+..++..  +.+|||+|+..+...          ...|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHHHH
Confidence            689999999999999999999998866 667777777777777777654  668999999987732          2233


Q ss_pred             c--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          169 C--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       169 ~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      +  +.+|++|+|+|+++.++...+..|+.   +.  ..|.|+|+||+|+.    +  ..........+++.++++++++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~--~~p~ivv~NK~Dl~----~--~~~~~~~~~~l~~~lg~~~i~~S  149 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLL---EL--GIPCIVALNMLDIA----E--KQNIRIEIDALSARLGCPVIPLV  149 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH--TCCEEEEEECHHHH----H--HTTEEECHHHHHHHHTSCEEECC
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHH---hc--CCCEEEEEECccch----h--hhhHHHHHHHHHHhcCCCEEEEE
Confidence            3  79999999999998665544444443   33  44568999999952    1  11112235677888899999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCC
Q 023316          247 ATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~~  267 (284)
                      |++|.|++++|+++.+.+.+.
T Consensus       150 A~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          150 STRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             CGGGHHHHHHHHHHHTCCCCC
T ss_pred             cCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999998876544

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=2.4e-22  Score=178.19  Aligned_cols=163  Identities=16%  Similarity=0.118  Sum_probs=113.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC--------cccccc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPI  167 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--------~~~~~~  167 (284)
                      ....+|+++|.+|||||||+|+|++.++.  ...+.++.+.....+..+  ...+.+|||+|+++.        ......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            34678999999999999999999999876  334433333332333333  356889999999873        345566


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~~~~-~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      +++++|++++|||++++.+..+  .|+ +.+.+.....|.|+|+||+|+.    ..... ..+.+..+  ....+++++|
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~----~~~~~-~~~~~~~~--~~~~~~~~iS  153 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAA----KYPEE-AMKAYHEL--LPEAEPRMLS  153 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGC----SSHHH-HHHHHHHT--STTSEEEECC
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccC----CchHH-HHHHHHHh--cCcCcEEEEe
Confidence            8899999999999998766543  444 5565544345558999999962    11110 12222222  1134789999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCcccc
Q 023316          247 ATHNINVNKIFKFIMAKLFNLPWTV  271 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~~~~~~  271 (284)
                      |++|.|++++|+.+...+.+.++..
T Consensus       154 A~~g~gv~~l~~~l~~~l~~~~~~y  178 (301)
T 1wf3_A          154 ALDERQVAELKADLLALMPEGPFFY  178 (301)
T ss_dssp             TTCHHHHHHHHHHHHTTCCBCCCSS
T ss_pred             CCCCCCHHHHHHHHHHhcccCCCCC
Confidence            9999999999999998887666544

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.88  E-value=1.3e-22  Score=177.23  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=122.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc------cccccc--c
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--K  170 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~------~~~~~~--~  170 (284)
                      .+||+++|++|||||||+++|++..+. ...++++.+.....+.+++..  +.+|||+|+..+..      +...|+  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            589999999999999999999998876 667788888887788887765  77999999998876      566666  7


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  250 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~  250 (284)
                      ++|++++|+|+++.+   ....|...+.... ..|.++|+||+|+.    +  ..........+++.++++++++||++|
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~-~~p~ilv~NK~Dl~----~--~~~~~~~~~~l~~~lg~~~~~~Sa~~g  150 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEME-VKNIILVLNKFDLL----K--KKGAKIDIKKMRKELGVPVIPTNAKKG  150 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHTT-CCSEEEEEECHHHH----H--HHTCCCCHHHHHHHHSSCEEECBGGGT
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhcC-CCCEEEEEEChhcC----c--ccccHHHHHHHHHHcCCcEEEEEeCCC
Confidence            899999999998854   3334444454432 24558999999962    1  111112367788889999999999999


Q ss_pred             cCHHHHHHHHHHHHhCCc
Q 023316          251 INVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~~~  268 (284)
                      .|++++|+.+...+.+..
T Consensus       151 ~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          151 EGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             BTHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999999876543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.88  E-value=3.1e-22  Score=187.52  Aligned_cols=152  Identities=14%  Similarity=0.208  Sum_probs=97.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc--------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~--------~~~~  169 (284)
                      .+||+++|.+|||||||+|+|++.+..  ..+++++.++....+.++|.  .+.+|||+|++++...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            589999999999999999999998643  66777888888888888885  57899999998876443        3478


Q ss_pred             cCCcEEEEEEeCCChhhHHHH---HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          170 KDAVAILFMFDLTSRCTLNSI---VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~---~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      +.+|++|+|||++++.+++.+   ..|++.+    .+.|.|+|+||+|+.    ....  .  ..+.+++....+++++|
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~----~~~~--~--~~~~l~~~~~~~~i~vS  378 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRA----ANAD--A--LIRAIADGTGTEVIGIS  378 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSC----TTTH--H--HHHHHHHHHTSCEEECB
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCC----Cccc--h--hHHHHHhcCCCceEEEE
Confidence            999999999999999887643   3444443    244558999999962    2211  1  12344444347899999


Q ss_pred             CCCCcCHHHHHHHHHHHHh
Q 023316          247 ATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~  265 (284)
                      |++|.|++++|+++.+.+.
T Consensus       379 Aktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          379 ALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTTTBSHHHHHHHHTHHHH
T ss_pred             ECCCCCHHHHHHHHHHHHh
Confidence            9999999999999999886

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=1.5e-23  Score=176.42  Aligned_cols=146  Identities=14%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCC----cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccC--
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD--  171 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~--  171 (284)
                      ...+||+++|++|||||||+++|.+..+..    ..++++.++         ..+.+.+|||+|++.++..+..|++.  
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            346899999999999999999999988653    233444433         34568899999999999988888887  


Q ss_pred             --CcEEEEEEeCC-ChhhHHHHHHHHHHHHhH----C-CCCceEEEEeCCCCCCCCCCC-cccchHHHHHHHHHHcCCcE
Q 023316          172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW----N-QTAIPILIGTKFDDFVRLPPD-LQWTIATQARAYAKAMKATL  242 (284)
Q Consensus       172 --ad~iilv~d~~-~~~s~~~~~~~~~~l~~~----~-~~~~~Ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~a~~~~~~~  242 (284)
                        +|++|+|||++ ++++|..+..|+.++...    . ...|.++|+||+|+....... ......+++..++...++++
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~  160 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL  160 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence              99999999999 889999999998888664    2 344457999999973221100 00111456777888888899


Q ss_pred             EEEcCCCCcC
Q 023316          243 FFSSATHNIN  252 (284)
Q Consensus       243 ~~~Sa~~~~~  252 (284)
                      +++||++|.+
T Consensus       161 ~~~Sa~~~~~  170 (218)
T 1nrj_B          161 NEVERKINEE  170 (218)
T ss_dssp             HC--------
T ss_pred             cccccccccc
Confidence            9999998876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.88  E-value=7.7e-23  Score=172.60  Aligned_cols=162  Identities=14%  Similarity=0.043  Sum_probs=106.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCC-C--CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCc----------CCccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQ-E--RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS----------RSFDH  164 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~-~--~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e----------~~~~~  164 (284)
                      ..+||+|+|.+|||||||+++|++..+ .  ...+.+..+.  ....+. .....+.+|||+|..          .+..+
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            368999999999999999999999873 2  3333333332  233333 333567899999953          34555


Q ss_pred             ccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----
Q 023316          165 VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----  237 (284)
Q Consensus       165 ~~~~~~~---ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~----  237 (284)
                      ...|++.   +|++++|+|+++..+.. ...|+..+..  ...|.|+|+||+|+.   +........++..+....    
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~---~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKL---TRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGS---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccC---ChhhHHHHHHHHHHHHHhhhhc
Confidence            5566665   78899999998865532 2355555554  234558999999962   211111112222333222    


Q ss_pred             ---cCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316          238 ---MKATLFFSSATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       238 ---~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~  268 (284)
                         .+++++++||++|.|++++|++|.+.+....
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence               4678999999999999999999999886543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=9.2e-22  Score=183.18  Aligned_cols=150  Identities=19%  Similarity=0.242  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC---------cccccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC  169 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~---------~~~~~~~~  169 (284)
                      .+|+++|.+|||||||+|+|++.+..  ...++++.+.....+.+++..  +++|||+|++..         ......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999998754  667777778887888888865  679999998763         23456689


Q ss_pred             cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHH-HHHHHHcCC-cEEEE
Q 023316          170 KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQA-RAYAKAMKA-TLFFS  245 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~a~~~~~-~~~~~  245 (284)
                      +++|++|+|+|+++..+..+  +..|+..   .  ..|.|+|+||+|+    .  ..  ...+. .+++ ..++ +++++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~---~--~~p~ilv~NK~D~----~--~~--~~~~~~~~~~-~lg~~~~~~i  145 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK---S--TVDTILVANKAEN----L--RE--FEREVKPELY-SLGFGEPIPV  145 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH---H--TCCEEEEEESCCS----H--HH--HHHHTHHHHG-GGSSCSCEEC
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEeCCCC----c--cc--cHHHHHHHHH-hcCCCCEEEE
Confidence            99999999999988766543  3344433   1  4566899999995    1  11  11222 3444 4576 78999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhC
Q 023316          246 SATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      ||++|.|++++|+++...+.+
T Consensus       146 SA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          146 SAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eccCCCCHHHHHHHHHHhccc
Confidence            999999999999999998864

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.87  E-value=1.2e-22  Score=187.53  Aligned_cols=157  Identities=15%  Similarity=0.074  Sum_probs=116.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc-------cc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------IA  168 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~-------~~  168 (284)
                      ...+||+++|+.|+|||||+++|++..+.  ...++++.+...+.+.+.+.. .+.+|||+|++++..+..       .+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHH
Confidence            44789999999999999999999998874  555666677777777776652 678999999999876643       37


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      ++.+|++|+|||++..+   ....|+..+.+.  +.|.|+|+||+|+.    ....   .+..+++++.++++++++||+
T Consensus       111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~----~~~~---~~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVL----GEKA---EELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             HTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTT----TCCC---THHHHHSSCCTTCCCCCCSSC
T ss_pred             HhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCC----CccH---HHHHHHHHHHcCCCEEEEECC
Confidence            89999999999993332   345677777665  44568999999962    2211   155667777889999999999


Q ss_pred             CCcCHHHHHHHHHHHHhCC
Q 023316          249 HNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~  267 (284)
                      +|.|++++|+++.+.+.+.
T Consensus       179 tg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHhhhhh
Confidence            9999999999999988544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=1.3e-21  Score=182.12  Aligned_cols=254  Identities=10%  Similarity=0.106  Sum_probs=147.8

Q ss_pred             hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc--------ccccccCCCCCCCCCcc
Q 023316            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR--------YQKLTRRSSSESSPAPD   75 (284)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~--------~~~~~~~~~~~~~~~~~   75 (284)
                      +..++..++..++..++.+|.+.++......+.+.++...-.++++-++......        +..+.....-..|+...
T Consensus        71 ~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           71 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHN  150 (439)
T ss_dssp             HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTT
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCC
Confidence            5566777788888889999999887776666666676654455555554332111        11111100000011111


Q ss_pred             ccccccc-cccc--ccCC-C-CCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEE
Q 023316           76 TMEAGLV-ELSR--TFSS-G-YDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARI  148 (284)
Q Consensus        76 ~~~~~~~-~~~~--~~~~-~-~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~  148 (284)
                      ......- ....  +... . .........+||+++|++|||||||+|++++....  ..+++++.+.....+.++|.. 
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~-  229 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK-  229 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE-
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE-
Confidence            0000000 0000  0000 0 00001234689999999999999999999998764  667777777777888888875 


Q ss_pred             EEEEEeCCCCcCCcccc------------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          149 AFSIWDVGGDSRSFDHV------------PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~------------~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                       +.+|||+|+.++....            ..+++.+|++++|+|+++..++++. .+...+..  ...+.|+|+||+|+.
T Consensus       230 -~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~  305 (439)
T 1mky_A          230 -YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLV  305 (439)
T ss_dssp             -EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGS
T ss_pred             -EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCC
Confidence             6799999986543321            2356789999999999987776652 23333332  234558999999962


Q ss_pred             CCCCCCcccchHHHH----HHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          217 VRLPPDLQWTIATQA----RAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       217 ~~~~~~~~~~~~~~~----~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                          +.......+..    +.++...+++++++||++|.|++++|+.+...+.+
T Consensus       306 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          306 ----VHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             ----TTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----CchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                21111111111    22333346799999999999999999999887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.85  E-value=2.1e-20  Score=169.56  Aligned_cols=159  Identities=13%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---------ccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA  168 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---------~~~~~  168 (284)
                      ..++|+++|.+|||||||+++|.+..+. ..++.++.+.....+..++  ..+.+|||+|...+..         ....+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            3579999999999999999999998764 4444333333333444444  5678999999866421         11134


Q ss_pred             ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      ...+|++|+|+|+++..  ++++...|+..+.......|.|+|+||+|+    ...  . ..+++..+++..+++++++|
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl----~~~--~-~~~~~~~~~~~~~~~~~~iS  316 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV----ADE--E-NIKRLEKFVKEKGLNPIKIS  316 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT----CCH--H-HHHHHHHHHHHTTCCCEECB
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc----CCh--H-HHHHHHHHHHhcCCCeEEEe
Confidence            45799999999999887  788888999999876555566899999996    221  1 12456667778899999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhC
Q 023316          247 ATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~  266 (284)
                      |++|+|++++|+++...+..
T Consensus       317 A~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999988754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.85  E-value=2.4e-21  Score=181.65  Aligned_cols=151  Identities=15%  Similarity=0.211  Sum_probs=117.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCc-CCccc--------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFDH--------VPIA  168 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e-~~~~~--------~~~~  168 (284)
                      .+||+++|.+|||||||+|+|++.++.  ..+++++.++....+.+++..  +.+|||+|++ ++...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence            389999999999999999999998743  777888888888888888754  7799999998 65432        3457


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      ++.+|++|+|||++++.++++.. +++.+    ...|.|+|+||+||..    .   ...+++..++. .+++++++||+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~----~---~~~~~~~~~~~-~~~~~i~iSAk  387 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVE----K---INEEEIKNKLG-TDRHMVKISAL  387 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCC----C---CCHHHHHHHHT-CSTTEEEEEGG
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECccccc----c---cCHHHHHHHhc-CCCcEEEEECC
Confidence            88999999999999998887643 33433    2455689999999731    1   11233444432 45789999999


Q ss_pred             CCcCHHHHHHHHHHHHh
Q 023316          249 HNINVNKIFKFIMAKLF  265 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~  265 (284)
                      +|.|++++|+++.+.+.
T Consensus       388 tg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          388 KGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             GTCCHHHHHHHHHHHTH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.83  E-value=6.8e-20  Score=168.77  Aligned_cols=166  Identities=14%  Similarity=0.109  Sum_probs=116.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCc--cc--cccee------------eeeEEEEE---CCeEEEEEEEeCCCC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS--LQ--MAGLN------------LINKTLMV---QGARIAFSIWDVGGD  158 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~--~~--t~~~~------------~~~~~~~~---~~~~~~l~l~Dt~G~  158 (284)
                      ...+||+++|++++|||||+++|++......  +.  +.+..            ........   ......+.+|||+|+
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            3478999999999999999999998543311  11  11100            00000000   122367899999999


Q ss_pred             cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc
Q 023316          159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM  238 (284)
Q Consensus       159 e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~  238 (284)
                      ++|......+++.+|++|+|+|+++..++.....|+..+..... .+.|+|+||+|+.   +.+......++..++.+..
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-~~iivviNK~Dl~---~~~~~~~~~~~i~~~l~~~  161 (403)
T 3sjy_A           86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-KNLIIVQNKVDVV---SKEEALSQYRQIKQFTKGT  161 (403)
T ss_dssp             GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-CCEEEEEECGGGS---CHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-CCEEEEEECcccc---chHHHHHHHHHHHHHHHhh
Confidence            99999888999999999999999998877777888877766543 3458999999962   2111111233444444332


Q ss_pred             ---CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          239 ---KATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       239 ---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                         +++++++||++|.|++++|+++...+...
T Consensus       162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          162 WAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence               57899999999999999999999877543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.83  E-value=1.2e-20  Score=176.14  Aligned_cols=153  Identities=18%  Similarity=0.245  Sum_probs=108.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc--------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~--------~~~~  169 (284)
                      .+||+++|.+|||||||+|+|++.++.  ..+++++.++....+.++|..  +.+|||+|+..+....        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhhh
Confidence            589999999999999999999987654  666777788877788888855  6799999987765433        3368


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      +.+|++|+|||++++.+... ..|++.+.    ..|.|+|+||+|+.    ......   ....++  .+.+++++||++
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~----~~~~~~---~~~~~~--~~~~~i~iSAkt  367 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLV----EKQLIT---SLEYPE--NITQIVHTAAAQ  367 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSS----CGGGST---TCCCCT--TCCCEEEEBTTT
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCC----cchhhH---HHHHhc--cCCcEEEEECCC
Confidence            89999999999999877655 55666653    24558999999962    211111   111111  357899999999


Q ss_pred             CcCHHHHHHHHHHHHhCCc
Q 023316          250 NINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~~~  268 (284)
                      |.|++++|+++.+.+....
T Consensus       368 g~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          368 KQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             TBSHHHHHHHHHHHHTTSS
T ss_pred             CCCHHHHHHHHHHHHhccC
Confidence            9999999999999886553

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.83  E-value=1.7e-20  Score=169.42  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=92.2

Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC--CCCceEEEEeCC
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN--QTAIPILIGTKF  213 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~----------~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~  213 (284)
                      ..+.+++|||+||++|+.++..||++++++|+|||++          +.++|++...|++.+....  .+.|.||+|||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            6789999999999999999999999999999999998          7889999999999887642  344558999999


Q ss_pred             CCCCC-C-----------CCCc----ccchHHHHHHHHHH----------------cCCcEEEEcCCCCcCHHHHHHHHH
Q 023316          214 DDFVR-L-----------PPDL----QWTIATQARAYAKA----------------MKATLFFSSATHNINVNKIFKFIM  261 (284)
Q Consensus       214 Dl~~~-~-----------~~~~----~~~~~~~~~~~a~~----------------~~~~~~~~Sa~~~~~v~~lf~~l~  261 (284)
                      ||..+ +           ++..    .....+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            97321 0           0000    00124666666443                123468999999999999999999


Q ss_pred             HHHhCC
Q 023316          262 AKLFNL  267 (284)
Q Consensus       262 ~~i~~~  267 (284)
                      +.+.+.
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.83  E-value=1e-20  Score=170.81  Aligned_cols=126  Identities=19%  Similarity=0.238  Sum_probs=97.8

Q ss_pred             EEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhH--CCCCceE
Q 023316          140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW--NQTAIPI  207 (284)
Q Consensus       140 ~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~----------~~s~~~~~~~~~~l~~~--~~~~~~I  207 (284)
                      .+.++  .+.+++|||+||+.++.+|..||++++++|+|||+++          ..++++...|++.+...  ..+.|.|
T Consensus       187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii  264 (353)
T 1cip_A          187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII  264 (353)
T ss_dssp             EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence            34444  4778999999999999999999999999999999999          56788888898888764  2344558


Q ss_pred             EEEeCCCCCCC----------CCCCcccchHHHHHHHHH-----------HcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          208 LIGTKFDDFVR----------LPPDLQWTIATQARAYAK-----------AMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       208 lv~nK~Dl~~~----------~~~~~~~~~~~~~~~~a~-----------~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      |+|||+||...          +++....+..+++..+++           ..++.+++|||+++.||+++|+++...+.+
T Consensus       265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            99999997311          000000133677888876           356789999999999999999999998864


Q ss_pred             C
Q 023316          267 L  267 (284)
Q Consensus       267 ~  267 (284)
                      .
T Consensus       345 ~  345 (353)
T 1cip_A          345 N  345 (353)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.82  E-value=5.2e-20  Score=159.43  Aligned_cols=163  Identities=13%  Similarity=0.041  Sum_probs=110.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC-CCCc-ccc-cceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc--------
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE-QERS-LQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP--------  166 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~-~~~~-~~t-~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~--------  166 (284)
                      ...+||+|+|.+|||||||+++|++.. +... .++ ++.+.....+..++.  .+.||||+|+..+.....        
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999987 4433 333 555555556666765  477999999987643322        


Q ss_pred             ---ccccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhHCCCCceEEEEe-CCCCCCCCCCCcccchH-------HHHHHH
Q 023316          167 ---IACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGT-KFDDFVRLPPDLQWTIA-------TQARAY  234 (284)
Q Consensus       167 ---~~~~~ad~iilv~d~~~~~s~-~~~~~~~~~l~~~~~~~~~Ilv~n-K~Dl~~~~~~~~~~~~~-------~~~~~~  234 (284)
                         .+++.+|++|+|+|+++.... ..+..|+.++.......|+|+|.| |+|+.    ..  ....       +++..+
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~----~~--~~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN----GG--SLMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT----TC--CHHHHHHHCCCHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC----Cc--cHHHHHHhcchHHHHHH
Confidence               267899999999999862222 223344444322221346665555 99963    11  1111       345556


Q ss_pred             HHHcCCcE-----EEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316          235 AKAMKATL-----FFSSATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       235 a~~~~~~~-----~~~Sa~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      ++.++..+     +++||+++.|++++|+++...+...+
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            77666433     67999999999999999999887644

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.82  E-value=1.7e-19  Score=159.84  Aligned_cols=163  Identities=15%  Similarity=0.108  Sum_probs=114.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCc---------CCcccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHVPI  167 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e---------~~~~~~~~  167 (284)
                      ...+|+++|++|||||||+|++++.++.  ...+.+..+.....+..++  ..+.+|||+|++         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            4568999999999999999999998764  3333222222222333344  467899999998         34455667


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS  246 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~S  246 (284)
                      +++.+|++++|+|.++   +.....|+-+... ....|.|+++||+|+.    .. +....+.+.++++.++. .++++|
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~----~~-~~~~~~~l~~l~~~~~~~~~i~iS  155 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNV----QE-KADLLPHLQFLASQMNFLDIVPIS  155 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTC----CC-HHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccC----cc-HHHHHHHHHHHHHhcCcCceEEEE
Confidence            8899999999999977   3333344433322 2245568999999962    11 22234556667776776 689999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCccccc
Q 023316          247 ATHNINVNKIFKFIMAKLFNLPWTVK  272 (284)
Q Consensus       247 a~~~~~v~~lf~~l~~~i~~~~~~~~  272 (284)
                      |+++.|++++++.+...+...++...
T Consensus       156 A~~g~~v~~l~~~i~~~l~~~~~~~~  181 (301)
T 1ega_A          156 AETGLNVDTIAAIVRKHLPEATHHFP  181 (301)
T ss_dssp             TTTTTTHHHHHHHHHTTCCBCCCSSC
T ss_pred             CCCCCCHHHHHHHHHHhCCcCCCCCC
Confidence            99999999999999988776665443

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.82  E-value=4.5e-20  Score=164.59  Aligned_cols=127  Identities=19%  Similarity=0.240  Sum_probs=95.8

Q ss_pred             EEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC--CCCceE
Q 023316          140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN--QTAIPI  207 (284)
Q Consensus       140 ~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~----------~~~s~~~~~~~~~~l~~~~--~~~~~I  207 (284)
                      .+.+++  +.+++|||+||++++.+|.+||++++++|+|||++          +.+++++...|++.+....  .+.|.|
T Consensus       161 ~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii  238 (327)
T 3ohm_A          161 PFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI  238 (327)
T ss_dssp             EEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred             EEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE
Confidence            344443  77999999999999999999999999999999654          6778888888888876532  344558


Q ss_pred             EEEeCCCCCCCC----------CCCcc-cchHHHHHHHH----------HHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          208 LIGTKFDDFVRL----------PPDLQ-WTIATQARAYA----------KAMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       208 lv~nK~Dl~~~~----------~~~~~-~~~~~~~~~~a----------~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      |+|||+||....          |+..- ....+++..+.          +..++.+++|||+++.||+++|..+...|++
T Consensus       239 L~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~  318 (327)
T 3ohm_A          239 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             EEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence            999999963210          11000 23466777773          3456778899999999999999999999976


Q ss_pred             Cc
Q 023316          267 LP  268 (284)
Q Consensus       267 ~~  268 (284)
                      ..
T Consensus       319 ~~  320 (327)
T 3ohm_A          319 LN  320 (327)
T ss_dssp             TT
T ss_pred             Hh
Confidence            54

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.82  E-value=1.2e-19  Score=164.82  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=111.2

Q ss_pred             eeE-EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC---------Cccccccc
Q 023316          100 SLK-ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA  168 (284)
Q Consensus       100 ~~K-I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~---------~~~~~~~~  168 (284)
                      .++ |+++|.+|+|||||+|++.+..+. ..++.++.+.....+.++|.  .+.+|||+|...         |.... ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            355 999999999999999999998865 45555566777788888885  467999999733         22222 24


Q ss_pred             ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc---CCcE
Q 023316          169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM---KATL  242 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~--s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~---~~~~  242 (284)
                      +..+|++++|+|++++.  +++.+..|.+.+..... +.|.|+|+||+|+   .+.. .....+.+..+++.+   +.++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl---~~~~-~~~~~~~~~~l~~~l~~~~~~~  330 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK---INGD-LYKKLDLVEKLSKELYSPIFDV  330 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG---CCSC-HHHHHHHHHHHHHHHCSCEEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC---CCch-HHHHHHHHHHHHHHhcCCCCcE
Confidence            78999999999999887  66667777777766543 3445899999996   2221 111123444455555   3468


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          243 FFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       243 ~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +++||+++.|++++++.+...+...
T Consensus       331 ~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          331 IPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHHHhccc
Confidence            8999999999999999998877543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.82  E-value=9e-20  Score=171.44  Aligned_cols=157  Identities=13%  Similarity=0.133  Sum_probs=111.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC-------CC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC  169 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~-------~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~  169 (284)
                      +..++|+++|..++|||||+++|.+..       +. +..+.++.+.....+.+++  ..+.+|||+|+++|......++
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            457999999999999999999999876       22 2223344444444555666  4578999999999988888889


Q ss_pred             cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc----CCcE
Q 023316          170 KDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATL  242 (284)
Q Consensus       170 ~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~----~~~~  242 (284)
                      ..+|++|+|+|+++   +.+++.+.    .+...  ..|.|+|+||+|+.   +++......++..++++..    ++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~--~ip~IvviNK~Dl~---~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHML----ILDHF--NIPIIVVITKSDNA---GTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHHH----HHHHT--TCCBCEEEECTTSS---CHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             hhCCEEEEEEecCCCccHHHHHHHH----HHHHc--CCCEEEEEECCCcc---cchhHHHHHHHHHHHHhhhcccccceE
Confidence            99999999999988   44444332    23222  34448999999962   2121222356667777665    5789


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHh
Q 023316          243 FFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       243 ~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +++||++|.|+++++++|...+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999998774

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=5.9e-21  Score=177.56  Aligned_cols=151  Identities=15%  Similarity=0.186  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCc--------CCccccccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACK  170 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e--------~~~~~~~~~~~  170 (284)
                      .+|+++|.+|||||||+|+|++..+.  ...+.++.+.....+.+++  ..+.+|||+|++        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999998775  3444444444444444444  458899999996        45566777899


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATH  249 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~  249 (284)
                      .+|++|+|+|+++..++.+  .|+..+.+. ...|.|+|+||+|+...    ..     +..++. ..++ +++++||++
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~----~~-----~~~~~~-~lg~~~~~~iSA~~  148 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEM----RA-----NIYDFY-SLGFGEPYPISGTH  148 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC--------------CCCSSG-GGSSCCCEECBTTT
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccc----hh-----hHHHHH-HcCCCCeEEEeCcC
Confidence            9999999999998877654  333333222 34555899999996311    00     111222 3455 789999999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023316          250 NINVNKIFKFIMAKLFN  266 (284)
Q Consensus       250 ~~~v~~lf~~l~~~i~~  266 (284)
                      |.|++++|+++...+.+
T Consensus       149 g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          149 GLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             TBTHHHHHHHHHHTGGG
T ss_pred             CCChHHHHHHHHHhcCc
Confidence            99999999999988864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.81  E-value=1.7e-19  Score=154.35  Aligned_cols=165  Identities=12%  Similarity=0.051  Sum_probs=108.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc--ccceeeeeEEEEECCeEEEEEEEeCCCCcC-----------Ccc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-----------SFD  163 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-----------~~~  163 (284)
                      ...+||+|+|.+|||||||++++++..+. ...+  +++.+.....+.+++..  +.+|||+|...           +..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHH
Confidence            34799999999999999999999998876 4444  45556666667777754  67999999543           334


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhH---CCCCceEEEEeCCCCCCCCCCCccc-chHHHHHHHHHHcC
Q 023316          164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW---NQTAIPILIGTKFDDFVRLPPDLQW-TIATQARAYAKAMK  239 (284)
Q Consensus       164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~---~~~~~~Ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~  239 (284)
                      ....+++++|++|+|+|+++....  ...|+..+.+.   ....|.|+|+||+|+.....-+... ...+.++.+++..+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            444566789999999999764431  12333333321   1123568999999963211000000 00246788888899


Q ss_pred             CcEEEEcCCCC-----cCHHHHHHHHHHHHhC
Q 023316          240 ATLFFSSATHN-----INVNKIFKFIMAKLFN  266 (284)
Q Consensus       240 ~~~~~~Sa~~~-----~~v~~lf~~l~~~i~~  266 (284)
                      ..++.+++..+     .++.++|..+...+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888877644     6899999998887754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.81  E-value=2.8e-20  Score=162.66  Aligned_cols=160  Identities=13%  Similarity=0.140  Sum_probs=96.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc--------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-------c
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------F  162 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-------~  162 (284)
                      ..+||+|+|.+|+|||||+|++++.... ..        .+|++.+.....+..+|..+.+.+|||+|....       .
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            3799999999999999999998776644 33        457777777666666777789999999998432       2


Q ss_pred             ccc-------ccccc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316          163 DHV-------PIACK-------------DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  222 (284)
Q Consensus       163 ~~~-------~~~~~-------------~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~  222 (284)
                      .+.       ..|+.             .+|+++++++.+.......-..|++.+..   ..|.|+|+||+|+   +...
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~---~~~~  160 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADT---LTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGG---SCHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCC---CCHH
Confidence            222       22222             37899999977653222222345555543   4455899999996   2222


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          223 LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      ......+...+.....+++++.+||.+++|++++++++...+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            111123455666677899999999999999999999988754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.80  E-value=4.3e-19  Score=163.32  Aligned_cols=208  Identities=13%  Similarity=0.091  Sum_probs=139.0

Q ss_pred             HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhc
Q 023316           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus        43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .++++++.+|.+|.++.+..+.+...     |.....|...........     -...-.|+|+|.+|+|||||++++.+
T Consensus       110 ~~~~~~~~GG~gG~Gn~~f~~~~~~~-----p~~~~~g~~g~~~~i~le-----lk~g~~VgLVG~~gAGKSTLL~~Lsg  179 (416)
T 1udx_A          110 GQTVLVARGGAGGRGNMHFVSPTRQA-----PRFAEAGEEGEKRRLRLE-----LMLIADVGLVGYPNAGKSSLLAAMTR  179 (416)
T ss_dssp             TCEEEEECCCCCCCCGGGGCCSSCSS-----CCEEECCCCCCEEEEEEE-----ECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred             CceEEEecCCCCCcccceeecccccC-----cccccCCCCceEeeeeeE-----EcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            46789999999888876654444332     222222211100000000     00012588999999999999999998


Q ss_pred             CCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----Ccccccccc---cCCcEEEEEEeCCChhhHHHHHHHH
Q 023316          123 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSRCTLNSIVGWY  194 (284)
Q Consensus       123 ~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----~~~~~~~~~---~~ad~iilv~d~~~~~s~~~~~~~~  194 (284)
                      .... ..++.++.......+.+++ ...+.+||++|...    +..+...|+   ..++.+++++|++ ..+++++..|.
T Consensus       180 ~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~  257 (416)
T 1udx_A          180 AHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLR  257 (416)
T ss_dssp             SCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHH
T ss_pred             CCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHH
Confidence            8654 4444333333334455554 24577999999854    233433343   4799999999998 77888888898


Q ss_pred             HHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          195 SEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       195 ~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      +++..+..   ..|.|+|+||+|+    ..  . ...++..+.++..+++++++||++++|++++|+++...+...++
T Consensus       258 ~el~~la~aL~~~P~ILVlNKlDl----~~--~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          258 KEVGAYDPALLRRPSLVALNKVDL----LE--E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHCHHHHHSCEEEEEECCTT----SC--H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHhHHhhcCCEEEEEECCCh----hh--H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence            88877653   4566899999995    22  1 23445556666678899999999999999999999999987654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.80  E-value=7.7e-19  Score=161.94  Aligned_cols=161  Identities=15%  Similarity=0.114  Sum_probs=105.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC---CC-Cccc--ccceeeeeEEEEE-------------C--C----eEEEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE---QE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW  153 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~---~~-~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~l~  153 (284)
                      ..++|+++|+.++|||||+++|.+..   +. ...+  |+...+....+..             +  +    ....+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            36899999999999999999998543   32 2223  4544444433322             1  2    13679999


Q ss_pred             eCCCCcCCcccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHH
Q 023316          154 DVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIAT  229 (284)
Q Consensus       154 Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~----~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~  229 (284)
                      ||+|+++|.......+..+|++|+|+|+++    +.+++.+..|    ... ...+.|+++||+|+.   +........+
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~~~~iivv~NK~Dl~---~~~~~~~~~~  158 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-GIDKIIIVQNKIDLV---DEKQAEENYE  158 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-TCCCEEEEEECTTSS---CTTTTTTHHH
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-CCCeEEEEEEccCCC---CHHHHHHHHH
Confidence            999999988777777889999999999985    4455444333    221 223457999999973   2222123356


Q ss_pred             HHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          230 QARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       230 ~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +++++++..   +++++++||++|+|++++|++|...+...
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            667777653   67899999999999999999999877543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.4e-20  Score=170.89  Aligned_cols=160  Identities=8%  Similarity=0.130  Sum_probs=94.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC-CCCcc---------cccceeeeeEEEEECCeEEEEEEEeCCCC-------cCC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE-QERSL---------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS  161 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~-~~~~~---------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------e~~  161 (284)
                      ..++|+|+|++|+|||||++++.+.. +...+         +|++.++....+..++..+.+.+|||+|+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            46899999999999999999987654 32221         35555555555555677788999999999       777


Q ss_pred             ccccc-------ccccCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          162 FDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       162 ~~~~~-------~~~~~ad~i-----------ilv~d~~~-~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                      ..+..       .|++.++++           +++|++++ ..++..+. .|+..+   ....|+|+|+||+|+.    .
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~----~  188 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTL----T  188 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSS----C
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCC----C
Confidence            77776       666554443           47777765 56666655 565554   3344558999999962    2


Q ss_pred             Ccccc-hHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          222 DLQWT-IATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       222 ~~~~~-~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      ..... ..+++..+++.++++++++||+++.| ++.|..+...+..
T Consensus       189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            11111 12577788888899999999999999 8889888887754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.80  E-value=6.6e-20  Score=150.98  Aligned_cols=108  Identities=14%  Similarity=0.129  Sum_probs=84.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCC----cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccC---
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD---  171 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~---  171 (284)
                      ..+||+++|++|||||||+++|.+..+..    ..++++.++         ..+.+.+|||+|++.+...+..+++.   
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            46899999999999999999999987653    122333322         33567899999999998888888876   


Q ss_pred             -CcEEEEEEeCC-ChhhHHHHHHHHHHHHhHC-----CCCceEEEEeCCCC
Q 023316          172 -AVAILFMFDLT-SRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDD  215 (284)
Q Consensus       172 -ad~iilv~d~~-~~~s~~~~~~~~~~l~~~~-----~~~~~Ilv~nK~Dl  215 (284)
                       +|++|+|||++ +.+++..+..|+..+....     ...|.++|+||+|+
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence             89999999999 8999999999988876542     24455799999997

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.79  E-value=1.4e-20  Score=178.05  Aligned_cols=159  Identities=13%  Similarity=0.103  Sum_probs=115.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+|+++|++++|||||+++|.+..+. ...++++.++....+.. ++.  .+.+|||+|++.|..++..+++.+|++|+
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            578999999999999999999988776 55556666665555544 333  57799999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH---HHHc--CCcEEEEcCCCCcC
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY---AKAM--KATLFFSSATHNIN  252 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---a~~~--~~~~~~~Sa~~~~~  252 (284)
                      |+|+++....+....| ..+..  ...|+|+++||+|+...-+.    ...++...+   +..+  .++++++||++|.|
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~----~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G  154 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPE----KVKKELLAYDVVCEDYGGDVQAVHVSALTGEN  154 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCC----SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred             EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchH----HHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999987766554443 22322  23455899999997322111    111222221   1222  25789999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 023316          253 VNKIFKFIMAKLFNL  267 (284)
Q Consensus       253 v~~lf~~l~~~i~~~  267 (284)
                      ++++|+++...+...
T Consensus       155 I~eLle~I~~l~~~~  169 (537)
T 3izy_P          155 MMALAEATIALAEML  169 (537)
T ss_dssp             SHHHHHHHHHHHTTC
T ss_pred             chhHHHHHHHhhhcc
Confidence            999999999877533

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.79  E-value=1e-18  Score=167.59  Aligned_cols=158  Identities=11%  Similarity=0.129  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC--CC---------Ccc---cccceeeeeEEEEE-----CCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~--~~---------~~~---~t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~e~  160 (284)
                      ..+|+++|+.++|||||+++|+...  ..         ...   .+.|.++....+.+     ++..+.+.+|||+|+++
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            5789999999999999999998632  11         111   12344443333332     56678999999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA  240 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~  240 (284)
                      |......+++.+|++|+|+|+++..+++....|...+..   +.|+|+++||+|+.    ...   ..+...++.+.+++
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~----~a~---~~~v~~ei~~~lg~  153 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLP----AAD---PERVAEEIEDIVGI  153 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTST----TCC---HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcc----ccc---HHHHHHHHHHHhCC
Confidence            999999999999999999999998888888888776542   34558999999962    221   23344556666676


Q ss_pred             ---cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          241 ---TLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       241 ---~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                         +++++||++|.|++++|+++...+...
T Consensus       154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          154 DATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             CcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence               489999999999999999999887654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.78  E-value=1.3e-18  Score=161.90  Aligned_cols=157  Identities=10%  Similarity=0.042  Sum_probs=105.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--------------------------------CcccccceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~  145 (284)
                      ...++|+++|.+++|||||+++|++..-.                                ...+.++.+.....+..++
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            34789999999999999999999654211                                0112344454444454444


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhHCCCCc-eEEEEeCCCCCCC
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT---LN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVR  218 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s---~~---~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~  218 (284)
                        ..+.+|||+|+++|......+++.+|++|+|+|+++...   |+   .....+..+..  ...+ .|+++||+|+...
T Consensus        95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence              468899999999999888889999999999999988642   21   11122222222  2345 4799999996210


Q ss_pred             -CCCCcccchHHHHHHHHHHcC------CcEEEEcCCCCcCHHHHHH
Q 023316          219 -LPPDLQWTIATQARAYAKAMK------ATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       219 -~~~~~~~~~~~~~~~~a~~~~------~~~~~~Sa~~~~~v~~lf~  258 (284)
                       ..+.......++...+++..+      ++++++||++|.|+.++++
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             011112223555666776665      4699999999999999655

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.78  E-value=4.6e-19  Score=158.63  Aligned_cols=121  Identities=18%  Similarity=0.265  Sum_probs=92.5

Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC--CCCceEEEEeCC
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN--QTAIPILIGTKF  213 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~----------~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~  213 (284)
                      ..+.+++|||+||++++.+|..||++++++|+|||++          +.+++.+...|+..+....  .+.|.||+|||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            3477999999999999999999999999999999998          7888998888888876542  344557999999


Q ss_pred             CCCCC----------CCCCcccchHHHHHHHHHH-c--------------------------CCcEEEEcCCCCcCHHHH
Q 023316          214 DDFVR----------LPPDLQWTIATQARAYAKA-M--------------------------KATLFFSSATHNINVNKI  256 (284)
Q Consensus       214 Dl~~~----------~~~~~~~~~~~~~~~~a~~-~--------------------------~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||...          +++.......+++.+|+.. +                          ++.+++|||+++.||+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            96321          1111111124555554432 2                          366788999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |..+...|++
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999987

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.78  E-value=2.5e-18  Score=158.58  Aligned_cols=162  Identities=13%  Similarity=0.127  Sum_probs=111.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC---CCC-ccc--ccceeeeeEEEEE-------------C--C----eEEEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE---QER-SLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSI  152 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~---~~~-~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~l  152 (284)
                      ...++|+++|+.++|||||+++|.+..   +.. ..+  |+...+....+..             +  +    ....+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            457999999999999999999998543   222 223  4444444333321             1  1    1367899


Q ss_pred             EeCCCCcCCcccccccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316          153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  228 (284)
Q Consensus       153 ~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~----~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~  228 (284)
                      |||+|+++|.......+..+|++|+|+|+++.    .+++.+..|    .... ..+.|+++||+|+.   +........
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~-~~~iivviNK~Dl~---~~~~~~~~~  159 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIG-QKNIIIAQNKIELV---DKEKALENY  159 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHT-CCCEEEEEECGGGS---CHHHHHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcC-CCcEEEEEECccCC---CHHHHHHHH
Confidence            99999999887777778899999999999854    444444333    2222 22447899999962   111111224


Q ss_pred             HHHHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          229 TQARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       229 ~~~~~~a~~---~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ++++++++.   .+++++++||++|.|++++|++|...+...
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            556666654   367999999999999999999999877543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.78  E-value=4.6e-20  Score=171.46  Aligned_cols=157  Identities=13%  Similarity=0.114  Sum_probs=106.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcC--CCCCc------------------------------ccccceeeeeEEEEECCe
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGN--EQERS------------------------------LQMAGLNLINKTLMVQGA  146 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~  146 (284)
                      ..+||+++|+.++|||||+++|++.  .+...                              ...++.+.....+  +..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~~   82 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ETK   82 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--ECS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ecC
Confidence            4689999999999999999999875  22210                              1122222222223  333


Q ss_pred             EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-----CCCc-eEEEEeCCCCCCC-C
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-----QTAI-PILIGTKFDDFVR-L  219 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~-----~~~~-~Ilv~nK~Dl~~~-~  219 (284)
                      ...+.+|||+|+++|......+++.+|++|+|+|+++ .+|++...|..+.+++.     ...+ .|+++||+|+.+. .
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            4568899999999999888889999999999999998 77886655443333221     1333 4799999997311 0


Q ss_pred             CCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHHH
Q 023316          220 PPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       220 ~~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~lf~  258 (284)
                      .++......++++.+++.++     ++++++||++|.|+.+++.
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            01111233667788888776     6799999999999986543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.78  E-value=3.9e-19  Score=167.35  Aligned_cols=156  Identities=14%  Similarity=0.075  Sum_probs=98.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--C----------------------------cccccceeeeeEEEEECCeEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--R----------------------------SLQMAGLNLINKTLMVQGARI  148 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~----------------------------~~~t~~~~~~~~~~~~~~~~~  148 (284)
                      ..+||+++|++++|||||+++|++....  .                            .....|.++......++....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            4799999999999999999999765211  0                            000113333333344444456


Q ss_pred             EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHH-----HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI-----VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  223 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~-----~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~  223 (284)
                      .+.||||+|+++|......+++.+|++|+|+|+++.+++..+     ..+...+.......+.|+|+||+|+.+. .+..
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~-~~~~  190 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-SQQR  190 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT-CHHH
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc-hHHH
Confidence            788999999999999999999999999999999987654332     1122222222222345799999996210 0011


Q ss_pred             ccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023316          224 QWTIATQARAYAKAMK-----ATLFFSSATHNINVNK  255 (284)
Q Consensus       224 ~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~  255 (284)
                      .....+++..+.+..+     ++++++||++|.|+++
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            1112344455555443     5789999999999875

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.77  E-value=5.9e-18  Score=162.07  Aligned_cols=158  Identities=13%  Similarity=0.203  Sum_probs=114.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC--CC---------Ccc---cccceeeee--EEEEE---CCeEEEEEEEeCCCCcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLIN--KTLMV---QGARIAFSIWDVGGDSR  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~--~~---------~~~---~t~~~~~~~--~~~~~---~~~~~~l~l~Dt~G~e~  160 (284)
                      ..+|+++|+.++|||||+++|+...  +.         ...   ...|.++..  ..+.+   ++..+.+.+|||+|+++
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            5799999999999999999997631  11         000   012233222  22222   56678999999999999


Q ss_pred             CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023316          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA  240 (284)
Q Consensus       161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~  240 (284)
                      |......+++.+|++|+|+|+++..+++....|...+.   ...|.|+++||+|+.    ...   ..+...++.+.+++
T Consensus        86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~----~a~---~~~v~~el~~~lg~  155 (600)
T 2ywe_A           86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLP----SAD---VDRVKKQIEEVLGL  155 (600)
T ss_dssp             GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTST----TCC---HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCcc----ccC---HHHHHHHHHHhhCC
Confidence            99888889999999999999999988888888876653   234558999999962    221   23344556666676


Q ss_pred             ---cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          241 ---TLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       241 ---~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                         +++++||++|.|++++|+++++.+...
T Consensus       156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          156 DPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             CGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence               489999999999999999999888654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.77  E-value=8.1e-19  Score=161.67  Aligned_cols=162  Identities=11%  Similarity=0.083  Sum_probs=115.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC--------CCCCc--------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN--------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~--------~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      ...+||+++|++++|||||+++|++.        .+...        ..+.|.++....+.++.....+.+|||+|+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            34799999999999999999999873        22111        012344444444445444466889999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  239 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~  239 (284)
                      ......+++.+|++|+|+|+++....+ ...|+..+...  ..| .|+++||+|+.   .+.. .....++.+++++.++
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMV---DDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECcccc---CcHHHHHHHHHHHHHHHHHhc
Confidence            888888999999999999999876543 35566655543  334 46899999962   1111 1122456777777776


Q ss_pred             -----CcEEEEcCCCCcC------------------HHHHHHHHHHHHh
Q 023316          240 -----ATLFFSSATHNIN------------------VNKIFKFIMAKLF  265 (284)
Q Consensus       240 -----~~~~~~Sa~~~~~------------------v~~lf~~l~~~i~  265 (284)
                           ++++++||++|.|                  +.++++.+...+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence                 6899999999988                  7788888777664

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.76  E-value=9.9e-19  Score=145.91  Aligned_cols=159  Identities=13%  Similarity=0.145  Sum_probs=99.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----------ccccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----------FDHVPIA  168 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----------~~~~~~~  168 (284)
                      ..+|+++|++|||||||++++++..+. ...++.|.......+.+++   .+.+|||+|....          ......+
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  102 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY  102 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence            579999999999999999999988754 3334556554444444444   3679999998532          2222334


Q ss_pred             c---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--Cc
Q 023316          169 C---KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--AT  241 (284)
Q Consensus       169 ~---~~ad~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~  241 (284)
                      +   ..++++++++|+++..++.+  +..|+..     ...+.++++||+|+   ++...+......++.++...+  +.
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~---~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADK---LASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG---SCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccC---CCchhHHHHHHHHHHHHHhcCCCCc
Confidence            4   57899999999998766543  3344432     13344788999995   322111111345666666554  46


Q ss_pred             EEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          242 LFFSSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       242 ~~~~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      ++++||+++.|++++++.+.+.+.+.+.
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            7889999999999999999888765443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.76  E-value=1.3e-18  Score=161.60  Aligned_cols=154  Identities=14%  Similarity=0.069  Sum_probs=104.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC---Cc---------c-cccc-------------------eeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---RS---------L-QMAG-------------------LNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~---------~-~t~~-------------------~~~~~~~~~~~~  145 (284)
                      ...+||+++|+.++|||||+++|+++...   ..         . .+++                   .+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            44689999999999999999999865411   10         1 1211                   111111222233


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcc
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQ  224 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~  224 (284)
                      ....+.+|||+|+++|......+++.+|++|+|+|+++....+ ...|+..+...  ..+ .|+|+||+|+.   +....
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~--~~~~iIvviNK~Dl~---~~~~~  175 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL--GIKHIVVAINKMDLN---GFDER  175 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCEEEEEEECTTTT---TSCHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEEcCcCC---cccHH
Confidence            3456889999999999888888899999999999999865433 34455444432  233 47899999962   21111


Q ss_pred             --cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023316          225 --WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF  257 (284)
Q Consensus       225 --~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~lf  257 (284)
                        ....++...+++.++     ++++++||++|.|++++|
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence              123566778888887     689999999999999853

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=1.7e-19  Score=168.60  Aligned_cols=154  Identities=15%  Similarity=0.176  Sum_probs=99.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCC--------CcCCcccccccccC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIACKD  171 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G--------~e~~~~~~~~~~~~  171 (284)
                      ..+|+|+|.+|||||||+|+|++.++.....+.|.+.......+......+.+|||+|        ++++......+++.
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  102 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE  102 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence            5699999999999999999999987752223344444444444444445688999999        56667778888999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN  250 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~  250 (284)
                      +|++|+|+|..+..+..  ..|+..+.+. ...|.|+|+||+|+.    +.     .....++. ..+. ..+++||++|
T Consensus       103 ad~il~VvD~~~~~~~~--d~~l~~~l~~-~~~pvilV~NK~D~~----~~-----~~~~~e~~-~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A          103 ADVIIFMVNGREGVTAA--DEEVAKILYR-TKKPVVLAVNKLDNT----EM-----RANIYDFY-SLGFGEPYPISGTHG  169 (456)
T ss_dssp             CSEEEEEEESSSCSCHH--HHHHHHHHTT-CCSCEEEEEECC------------------CCSG-GGSSSSEEECCTTTC
T ss_pred             CCEEEEEEeCCCCCChH--HHHHHHHHHH-cCCCEEEEEECccch----hh-----hhhHHHHH-HcCCCceEEeecccc
Confidence            99999999987654433  3344333332 345558999999962    11     01111111 2233 5679999999


Q ss_pred             cCHHHHHHHHHHHHhC
Q 023316          251 INVNKIFKFIMAKLFN  266 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~  266 (284)
                      .|+.++|+.+...+..
T Consensus       170 ~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TTHHHHHHHHHTTGGG
T ss_pred             cchHHHHHHHHhhccc
Confidence            9999999999887643

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.76  E-value=1.4e-18  Score=159.60  Aligned_cols=161  Identities=11%  Similarity=0.082  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC-------CCCc--------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE-------QERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~-------~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~  164 (284)
                      .+||+++|+.++|||||+++|++..       +...        ....|.++....+.+......+.+|||+|+++|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            6899999999999999999998741       1100        001233332233334444456889999999999888


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcc-cchHHHHHHHHHHcC---
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMK---  239 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a~~~~---  239 (284)
                      ...+++.+|++|+|+|+++....+....| ..+...  ..| .|+++||+|+.   ..... ....++.+++++.++   
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAV---QDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGC---SCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccC---CCHHHHHHHHHHHHHHHHHcCCCc
Confidence            88889999999999999986654444434 334332  334 36899999962   11111 123466777888776   


Q ss_pred             --CcEEEEcCCCCcC----------HHHHHHHHHHHHhC
Q 023316          240 --ATLFFSSATHNIN----------VNKIFKFIMAKLFN  266 (284)
Q Consensus       240 --~~~~~~Sa~~~~~----------v~~lf~~l~~~i~~  266 (284)
                        ++++++||++|.|          +.++|+.+...+..
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence              5899999999775          89999998887653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.76  E-value=3.8e-19  Score=166.64  Aligned_cols=158  Identities=11%  Similarity=0.029  Sum_probs=92.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC--CCCC-------------------------c-----ccccceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER-------------------------S-----LQMAGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~~~~-------------------------~-----~~t~~~~~~~~~~~~~~  145 (284)
                      ...+||+++|+.++|||||+++|+..  .+..                         .     ...++.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            44689999999999999999999742  1110                         0     01112222223344444


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhHC-CCCc-eEEEEeCCCCCCCC-
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGWYSEARKWN-QTAI-PILIGTKFDDFVRL-  219 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~~~~~~~~~l~~~~-~~~~-~Ilv~nK~Dl~~~~-  219 (284)
                        ..+.||||+|+++|......+++.+|++|+|+|+++..   +|+....|.+.+.... ...| +|+++||+|+...- 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              56789999999999988888999999999999999863   4433233333332221 2334 47999999963110 


Q ss_pred             CCCcccchHHHHHHHHHHc-C------CcEEEEcCCCCcCHHHHH
Q 023316          220 PPDLQWTIATQARAYAKAM-K------ATLFFSSATHNINVNKIF  257 (284)
Q Consensus       220 ~~~~~~~~~~~~~~~a~~~-~------~~~~~~Sa~~~~~v~~lf  257 (284)
                      +++....+.++...+++.. +      ++++++||++|.|+.++|
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            0111123355677777766 3      569999999999998865

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.76  E-value=4.6e-18  Score=163.11  Aligned_cols=161  Identities=14%  Similarity=0.092  Sum_probs=105.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-----cccceeeeeEEE------------EECCeEEEEEEEeCCCCcCC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTL------------MVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-----~t~~~~~~~~~~------------~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      ...+|+++|++++|||||+++|.+..+....     +++|..+.....            .++.....+.+|||+|++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            4579999999999999999999886554222     233433321110            00001124889999999999


Q ss_pred             cccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc----------c-cch
Q 023316          162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------Q-WTI  227 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~----------~-~~~  227 (284)
                      ..++..+++.+|++|+|||+++   +.+++.+..    +..  ...|.|+++||+|+........          + ...
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            9999999999999999999999   666655442    222  2345589999999743221100          0 000


Q ss_pred             HH-------HHHHHHHHcC---------------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          228 AT-------QARAYAKAMK---------------ATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       228 ~~-------~~~~~a~~~~---------------~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      .+       +......+.+               ++++++||++|.|++++++++...+.
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            01       1111111222               37899999999999999999988664

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.75  E-value=6.4e-18  Score=160.20  Aligned_cols=111  Identities=11%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC------------------CCCCcc-----cccceeeeeEEEEECCeEEEEEEEeCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN------------------EQERSL-----QMAGLNLINKTLMVQGARIAFSIWDVG  156 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~------------------~~~~~~-----~t~~~~~~~~~~~~~~~~~~l~l~Dt~  156 (284)
                      ..+|+++|.+|+|||||+++|+..                  ......     ..+........+..++  +.+.||||+
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDTP   90 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDTP   90 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEECC
Confidence            579999999999999999999621                  111110     1122222233344444  568899999


Q ss_pred             CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |+++|......+++.+|++|+|+|+++..+.+....|. .+...  ..|.|+|+||+|+
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl  146 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDR  146 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCC
Confidence            99999999999999999999999999988877766664 33332  3455899999996

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=1.5e-18  Score=153.77  Aligned_cols=132  Identities=11%  Similarity=0.041  Sum_probs=105.3

Q ss_pred             HHHHHHhcCCCC-C-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh-hHHHHH
Q 023316          115 SFVVKYVGNEQE-R-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIV  191 (284)
Q Consensus       115 sLl~~l~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~  191 (284)
                      +|+.+|+.+.|. . ..+|+|..+. ..+..++   .+++|||  +++|+.+++.|++++|++|+|||+++++ +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            788999999886 4 4468895443 3332333   5789999  9999999999999999999999999997 799999


Q ss_pred             HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHH
Q 023316          192 GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIM  261 (284)
Q Consensus       192 ~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~  261 (284)
                      .|+..+..  .+.|+|||+||+||    .+.  +. .+++.++++.++  +++++|||++|.||+++|..+.
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL----~~~--~~-v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDL----YDE--DD-LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGG----CCH--HH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHc----CCc--hh-HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            99998865  34566899999996    221  11 245677787777  8999999999999999998764

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.74  E-value=2.9e-19  Score=167.80  Aligned_cols=159  Identities=10%  Similarity=0.106  Sum_probs=106.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ...+|+++|+.++|||||+++|.+..+. ...++++.+.....+..++.  .+.+|||+|++.|..++..++..+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            3578999999999999999999887655 33334444443334444554  46799999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~  255 (284)
                      |+|+++....+....| ..+..  ...|.|+++||+|+...-++..... ..+...+++.++  ++++++||++|.|+++
T Consensus        81 VVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~-l~~~~~~~~~~~~~~~~v~vSAktG~gI~e  156 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNE-LSQYGILPEEWGGESQFVHVSAKAGTGIDE  156 (501)
T ss_dssp             EEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCC-CCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred             EeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHH-HHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence            9999884322222222 22222  2345689999999743211110000 000011122333  7899999999999999


Q ss_pred             HHHHHHHH
Q 023316          256 IFKFIMAK  263 (284)
Q Consensus       256 lf~~l~~~  263 (284)
                      +|+++...
T Consensus       157 Lle~I~~~  164 (501)
T 1zo1_I          157 LLDAILLQ  164 (501)
T ss_dssp             HHHHTTTT
T ss_pred             hhhhhhhh
Confidence            99998753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.8e-18  Score=166.79  Aligned_cols=156  Identities=14%  Similarity=0.102  Sum_probs=101.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc-------------------------------ccccceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS-------------------------------LQMAGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~-------------------------------~~t~~~~~~~~~~~~~~  145 (284)
                      ...+||+++|.+++|||||+++|++.... ..                               .+.++.+.....+... 
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence            44789999999999999999999876432 11                               0222333333334333 


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhH-CCCCc-eEEEEeCCCCCCCCC
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGWYSEARKW-NQTAI-PILIGTKFDDFVRLP  220 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~~~~~~~~~l~~~-~~~~~-~Ilv~nK~Dl~~~~~  220 (284)
                       ...+.||||+|+++|......+++.+|++|+|+|+++..   +|+....+...+... ....+ +|||+||+|+.+. .
T Consensus       244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~-~  321 (611)
T 3izq_1          244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-S  321 (611)
T ss_dssp             -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT-C
T ss_pred             -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch-h
Confidence             456889999999999988889999999999999998742   111111122222111 12334 4789999996210 0


Q ss_pred             CCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023316          221 PDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI  256 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~l  256 (284)
                      ........++...++...+     ++++++||++|.|+.++
T Consensus       322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            0111122455556666554     58999999999999876

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.73  E-value=1e-18  Score=154.75  Aligned_cols=162  Identities=8%  Similarity=0.090  Sum_probs=86.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC-CCCCcc---------cccceeeeeEEEEECCeEEEEEEEeCCCC-------cC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN-EQERSL---------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SR  160 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~-~~~~~~---------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------e~  160 (284)
                      ...++|+|+|++|+|||||++++.+. .+....         ++.+.......+..++....+.+|||+|+       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34689999999999999999998875 443211         12222222222233455678999999998       66


Q ss_pred             Cccccc-------ccccC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          161 SFDHVP-------IACKD-------------AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       161 ~~~~~~-------~~~~~-------------ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      +..+..       .+++.             +++++++.+.+. .+++.+.  .+.++......+.++|+||+|+.    
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~~~~~iilV~~K~Dl~----  168 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIHNKVNIVPVIAKADTL----  168 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHTTTSCEEEEECCGGGS----
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHHhcCCEEEEEEeCCCC----
Confidence            666654       44432             233444443322 2333333  12333334344558999999962    


Q ss_pred             CCccc-chHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          221 PDLQW-TIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       221 ~~~~~-~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ...+. ...+++.++++.++++++++||+++ |++++|..+++.+...
T Consensus       169 ~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          169 TLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            21111 2256788899999999999999999 9999999999988654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.72  E-value=1.1e-17  Score=152.21  Aligned_cols=146  Identities=8%  Similarity=-0.043  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      +|+++|.+++|||||+++|+       ...++.+.....+..++  ..+.+|||+|+++|.......++.+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH-------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            89999999999999999998       11222222222333333  458899999999998777778899999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhHCCCCce-EEEEe-CCCCCCCCCCCcc-cchHHHHHHHHHHcC---CcEEE--EcCCC---C
Q 023316          182 TSRCTLNSIVGWYSEARKWNQTAIP-ILIGT-KFDDFVRLPPDLQ-WTIATQARAYAKAMK---ATLFF--SSATH---N  250 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~n-K~Dl~~~~~~~~~-~~~~~~~~~~a~~~~---~~~~~--~Sa~~---~  250 (284)
                      + ...+....+|+..+...  ..+. |+++| |+|+     +... ....++++++++..+   +++++  +||++   +
T Consensus        93 ~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-----~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g  164 (370)
T 2elf_A           93 P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-----HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPF  164 (370)
T ss_dssp             T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-----CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTT
T ss_pred             C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-----CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCC
Confidence            4 34455556676666543  3455 78888 9994     2111 112356666666553   68999  99999   9


Q ss_pred             cCHHHHHHHHHHHHh
Q 023316          251 INVNKIFKFIMAKLF  265 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~  265 (284)
                      .|++++|+.+...+.
T Consensus       165 ~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          165 EGVDELKARINEVAE  179 (370)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhcc
Confidence            999999999988764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.72  E-value=1.5e-17  Score=151.94  Aligned_cols=134  Identities=18%  Similarity=0.219  Sum_probs=99.9

Q ss_pred             ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhH
Q 023316          131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW  200 (284)
Q Consensus       131 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~----------~~s~~~~~~~~~~l~~~  200 (284)
                      |+|++.  ..+.+++  +.+++|||+||++++.+|..||++++++|+|||+++          .++|+++..|++.+...
T Consensus       204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            455554  3555665  789999999999999999999999999999999999          89999999999998765


Q ss_pred             C--CCCceEEEEeCCCCCCC-C---C--------CC-------------cccchHHHHHHHH-----HH--------cCC
Q 023316          201 N--QTAIPILIGTKFDDFVR-L---P--------PD-------------LQWTIATQARAYA-----KA--------MKA  240 (284)
Q Consensus       201 ~--~~~~~Ilv~nK~Dl~~~-~---~--------~~-------------~~~~~~~~~~~~a-----~~--------~~~  240 (284)
                      .  .+.|+||+|||+||... +   .        +.             ......+++..|+     +.        .++
T Consensus       280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~  359 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  359 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred             ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence            2  34455899999997321 0   0        00             0000135555553     22        245


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316          241 TLFFSSATHNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       241 ~~~~~Sa~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      .+++|||+++.||+++|..+...+.+..
T Consensus       360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          360 YPHFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence            6789999999999999999988886543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.72  E-value=4.4e-18  Score=159.07  Aligned_cols=154  Identities=9%  Similarity=0.050  Sum_probs=102.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC--CCCC------------------------c------ccccceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER------------------------S------LQMAGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~~~~------------------------~------~~t~~~~~~~~~~~~~~  145 (284)
                      ...++|+++|++++|||||+++|++.  .+..                        +      ...++.+.....+.  .
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~--~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--C
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--c
Confidence            35799999999999999999999864  1210                        0      01222233323333  3


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhHCCCCc-eEEEEeCCCCCCC
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVR  218 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~---~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~  218 (284)
                      ....+.+|||+|+++|......+++.+|++|+|+|+++..   +|+   ....++..+..  ...+ .|+++||+|+.+.
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccC
Confidence            3456889999999999988888999999999999998763   231   22222222322  2334 4789999996210


Q ss_pred             CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023316          219 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI  256 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~l  256 (284)
                       +++......++.+.+++.++     ++++++||++|.|+.++
T Consensus       161 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 -DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             -CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence             01111223566777777776     68999999999999754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.71  E-value=1.8e-18  Score=152.39  Aligned_cols=158  Identities=15%  Similarity=0.084  Sum_probs=98.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-C------cccc----------------------ccee--------------
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R------SLQM----------------------AGLN--------------  135 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~------~~~t----------------------~~~~--------------  135 (284)
                      ..+||+|+|++|||||||+|+|++.++. .      ..++                      +..+              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999998874 1      1122                      0000              


Q ss_pred             -------eeeEEEEECC-eEEEEEEEeCCCCcC-------------CcccccccccCCcEEE-EEEeCCChhhHHHHHHH
Q 023316          136 -------LINKTLMVQG-ARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAIL-FMFDLTSRCTLNSIVGW  193 (284)
Q Consensus       136 -------~~~~~~~~~~-~~~~l~l~Dt~G~e~-------------~~~~~~~~~~~ad~ii-lv~d~~~~~s~~~~~~~  193 (284)
                             .....+.+.+ ....+.+|||+|...             +..+...|++.++++| +|+|+++..+..+...|
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                   0000111111 124688999999753             3345667888888776 69999876555444455


Q ss_pred             HHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH--cC-CcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          194 YSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA--MK-ATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       194 ~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~--~~-~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      +..+..  ...+.|+|+||+|+.   +.. .. ..+..+.....  .+ .+++++||++|.|++++|+++...
T Consensus       185 ~~~~~~--~~~~~i~V~NK~Dl~---~~~-~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          185 AKEVDP--QGQRTIGVITKLDLM---DEG-TD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHCT--TCSSEEEEEECGGGS---CTT-CC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHhCC--CCCeEEEEEEccccC---CCC-ch-HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            555432  234558999999973   211 11 11211110001  12 357789999999999999998864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.71  E-value=1.8e-17  Score=166.53  Aligned_cols=164  Identities=10%  Similarity=0.079  Sum_probs=112.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCC-------CC--------CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNE-------QE--------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~-------~~--------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      ....+||+++|+.++|||||+++|++..       +.        ....+.|.++....+.++.....+.+|||+|+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3457999999999999999999998741       10        01123344443334445445567889999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  239 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~  239 (284)
                      ......+++.+|++|+|+|+++....+. ..|+..+...  ..| .|+++||+|+.   .... ...+.++++.+++..+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l--gIP~IIVVINKiDLv---~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV--GVPYIIVFLNKCDMV---DDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH--TCSCEEEEEECCTTC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc--CCCeEEEEEeecccc---cchhhHHHHHHHHHHHHHhcc
Confidence            8888888999999999999998654333 3455555443  344 36899999962   1111 1123566777887776


Q ss_pred             -----CcEEEEcCCCC--------cCHHHHHHHHHHHHhC
Q 023316          240 -----ATLFFSSATHN--------INVNKIFKFIMAKLFN  266 (284)
Q Consensus       240 -----~~~~~~Sa~~~--------~~v~~lf~~l~~~i~~  266 (284)
                           ++++++||++|        .|+.++|+.+...+..
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence                 68999999999        5799999998876643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.70  E-value=1.5e-16  Score=137.93  Aligned_cols=114  Identities=18%  Similarity=0.153  Sum_probs=86.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccccccc------
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------  170 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~------  170 (284)
                      ..+||+++|..|+|||||+++|++..+.  ..+++++.......+..++.  .+.+|||+|++++......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            3799999999999999999999998864  44555555555556666665  5789999999998776666554      


Q ss_pred             ---CCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCC---CceEEEEeCCCC
Q 023316          171 ---DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQT---AIPILIGTKFDD  215 (284)
Q Consensus       171 ---~ad~iilv~d~~~~~s~~~~-~~~~~~l~~~~~~---~~~Ilv~nK~Dl  215 (284)
                         .+|++|+|+|++... +... ..|++.+.+....   .+.|+|+||+|+
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl  163 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF  163 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence               889999999997755 4433 4788877765432   244799999997

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=1.1e-17  Score=153.34  Aligned_cols=84  Identities=19%  Similarity=0.204  Sum_probs=48.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccc--eeeeeEEE-------------------EECCe-EEEEEEEeCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAG--LNLINKTL-------------------MVQGA-RIAFSIWDVGG  157 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~--~~~~~~~~-------------------~~~~~-~~~l~l~Dt~G  157 (284)
                      +||+++|.+|||||||+|++++.... ..++.++  .+.....+                   .+++. .+.+++|||+|
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999998744 4555222  22221111                   12332 47799999999


Q ss_pred             CcC----Cccccc---ccccCCcEEEEEEeCCCh
Q 023316          158 DSR----SFDHVP---IACKDAVAILFMFDLTSR  184 (284)
Q Consensus       158 ~e~----~~~~~~---~~~~~ad~iilv~d~~~~  184 (284)
                      +.+    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            864    333444   346899999999999886

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.68  E-value=6e-17  Score=146.69  Aligned_cols=134  Identities=13%  Similarity=0.148  Sum_probs=93.7

Q ss_pred             ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhH
Q 023316          131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW  200 (284)
Q Consensus       131 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~----------~~s~~~~~~~~~~l~~~  200 (284)
                      |+|++.  ..+.+++  +.+++|||+||+.++.+|..||++++++|+|||+++          ..++.+...|+..+...
T Consensus       188 T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~  263 (362)
T 1zcb_A          188 TKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN  263 (362)
T ss_dssp             CSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             ccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence            455543  3455554  778999999999999999999999999999999999          77999999999888764


Q ss_pred             --CCCCceEEEEeCCCCCCC----------CCCCccc-chHHHHHHHHH-----------HcCCcEEEEcCCCCcCHHHH
Q 023316          201 --NQTAIPILIGTKFDDFVR----------LPPDLQW-TIATQARAYAK-----------AMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       201 --~~~~~~Ilv~nK~Dl~~~----------~~~~~~~-~~~~~~~~~a~-----------~~~~~~~~~Sa~~~~~v~~l  256 (284)
                        ..+.|.||++||+||...          +|+.... ...+++..++.           ..++.+++|||+++.||+++
T Consensus       264 ~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v  343 (362)
T 1zcb_A          264 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV  343 (362)
T ss_dssp             GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred             hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence              234455899999997311          0110011 33566766652           34678899999999999999


Q ss_pred             HHHHHHHHhCCc
Q 023316          257 FKFIMAKLFNLP  268 (284)
Q Consensus       257 f~~l~~~i~~~~  268 (284)
                      |.++...+.+..
T Consensus       344 F~~v~~~i~~~~  355 (362)
T 1zcb_A          344 FRDVKDTILHDN  355 (362)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999886543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.68  E-value=8.1e-18  Score=161.67  Aligned_cols=152  Identities=13%  Similarity=0.087  Sum_probs=81.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--------------------------------CcccccceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~  145 (284)
                      ...++|+++|.+++|||||+++|++..-.                                ...++++.+.....+..+ 
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence            34689999999999999999999642100                                001233333333333333 


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hH--H-HHHHHHHHHHhHCCCCc-eEEEEeCCCCCCC
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TL--N-SIVGWYSEARKWNQTAI-PILIGTKFDDFVR  218 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~--~-~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~  218 (284)
                       ...+.||||+|+++|......+++.+|++|+|+|+++..   .+  . .....+..+.. . ..+ +|+|+||+|+...
T Consensus       254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l-gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L-GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S-SCCCEEEEEECGGGGTT
T ss_pred             -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c-CCCeEEEEEeccccccc
Confidence             356789999999999988888999999999999998642   11  0 01111222222 1 334 4789999996210


Q ss_pred             CCCCcccchHHHHHHHH-HHcCC-----cEEEEcCCCCcCHH
Q 023316          219 LPPDLQWTIATQARAYA-KAMKA-----TLFFSSATHNINVN  254 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a-~~~~~-----~~~~~Sa~~~~~v~  254 (284)
                       ..+....+.++...+. +..++     +++++||++|.|+.
T Consensus       331 -~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          331 -SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             -CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             -cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence             0111112244555555 55554     69999999999998

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.68  E-value=6.6e-17  Score=148.86  Aligned_cols=159  Identities=14%  Similarity=0.147  Sum_probs=87.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc--------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------  162 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------  162 (284)
                      ...++|+|+|++|+|||||++.|++..+. ..        .++++.+.....+...+....+.+||++|...+.      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            44689999999999999999999988763 21        1233323222222234455678999999987642      


Q ss_pred             -c------------------cccccccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          163 -D------------------HVPIACKDAVAILFMFDLTSR-CTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       163 -~------------------~~~~~~~~ad~iilv~d~~~~-~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                       .                  +.+.++.++++.+++|+.... .++.... .|+..+.   ...++|+|+||+|+   +..
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dl---l~~  182 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADT---LTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTS---SCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccC---ccH
Confidence             1                  234566777777777766543 4555554 6777774   24455899999996   221


Q ss_pred             Ccccch--HHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          222 DLQWTI--ATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       222 ~~~~~~--~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                        ....  .+++..++..++++++++||+++.++.++|..+...+
T Consensus       183 --~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          183 --EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             --HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             --HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence              1122  3678888888999999999999999999888877654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.67  E-value=4.2e-16  Score=151.74  Aligned_cols=113  Identities=13%  Similarity=0.092  Sum_probs=81.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-Cc-------------cc---ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS-------------LQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~-------------~~---t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ..+|+++|+.|+|||||+++|++.... ..             .+   ..+..+......+....+.+.+|||+|+++|.
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~   88 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV   88 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence            578999999999999999999854321 00             00   11334444444443345778899999999999


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      .....+++.+|++++|+|+++....... .|+..+...  ..|.|+++||+|+
T Consensus        89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~--~ip~ilv~NKiD~  138 (665)
T 2dy1_A           89 GEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL--GLPRMVVVTKLDK  138 (665)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEECGGG
T ss_pred             HHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc--cCCEEEEecCCch
Confidence            8888999999999999999877654443 444555442  3455899999996

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.66  E-value=6e-16  Score=134.73  Aligned_cols=114  Identities=18%  Similarity=0.111  Sum_probs=80.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccc---------
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI---------  167 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~---------  167 (284)
                      ..+||+++|.+|+|||||+|+|++..+.  ...+++..+.....+..++  ..+.+|||+|++++..+...         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            3699999999999999999999998864  3333333333333333344  56889999999887644332         


Q ss_pred             cccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCC---CceEEEEeCCCC
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQT---AIPILIGTKFDD  215 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~-~~~~~~l~~~~~~---~~~Ilv~nK~Dl  215 (284)
                      ..+.+|++|+|+|++.. ++... ..|+..+.+....   .+.|+|+||+|+
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl  166 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF  166 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence            13479999999999764 34433 4788888765333   355899999996

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.64  E-value=1.4e-16  Score=155.87  Aligned_cols=167  Identities=16%  Similarity=0.122  Sum_probs=107.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--Ccccccc--------eeeeeE------------------------------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG--------LNLINK------------------------------  139 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~--------~~~~~~------------------------------  139 (284)
                      .++|+|+|.+|+|||||+|+|++.++.  ...+++.        .+....                              
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~  148 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK  148 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence            689999999999999999999998754  3344331        000000                              


Q ss_pred             ---------------EEEECCeE--EEEEEEeCCCCcC---CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 023316          140 ---------------TLMVQGAR--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK  199 (284)
Q Consensus       140 ---------------~~~~~~~~--~~l~l~Dt~G~e~---~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~  199 (284)
                                     .+.++...  ..+.||||+|...   .......+++.+|++|+|+|+++..+..+...|.+.+..
T Consensus       149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~  228 (695)
T 2j69_A          149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG  228 (695)
T ss_dssp             HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT
T ss_pred             HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh
Confidence                           01111100  2478999999765   344566788999999999999999888887777655533


Q ss_pred             HCCCCceEEEEeCCCCCCCC--CCCcc-cc--hHHHHHH-----HHHH--------cCCcEEEEcCC-------------
Q 023316          200 WNQTAIPILIGTKFDDFVRL--PPDLQ-WT--IATQARA-----YAKA--------MKATLFFSSAT-------------  248 (284)
Q Consensus       200 ~~~~~~~Ilv~nK~Dl~~~~--~~~~~-~~--~~~~~~~-----~a~~--------~~~~~~~~Sa~-------------  248 (284)
                      .  ..+.++|+||+|+...-  +++.. ..  ..+....     +...        .+.+++++||+             
T Consensus       229 ~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~  306 (695)
T 2j69_A          229 R--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQAD  306 (695)
T ss_dssp             S--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCC
T ss_pred             h--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhh
Confidence            2  33457999999963110  00000 00  0011111     1111        12478999999             


Q ss_pred             -CCcCHHHHHHHHHHHHhCCc
Q 023316          249 -HNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       249 -~~~~v~~lf~~l~~~i~~~~  268 (284)
                       ++.|+++++..+...+....
T Consensus       307 ~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          307 LDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             CTTSSHHHHHHHHHHHHHHTH
T ss_pred             hhccCHHHHHHHHHHHHHHhH
Confidence             99999999999988775443

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.62  E-value=1.3e-14  Score=130.94  Aligned_cols=145  Identities=13%  Similarity=0.098  Sum_probs=96.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCCc-
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF-  162 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~~-  162 (284)
                      .+||+++|.+|||||||+|++++..+. ..++.++.+.....+.+++..               ..+++|||+|+.++. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            368999999999999999999998865 556633323233345555532               568999999998863 


Q ss_pred             ---ccccc---cccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHH----------------------------
Q 023316          163 ---DHVPI---ACKDAVAILFMFDLTSR----------CTLNSIVGWYSEAR----------------------------  198 (284)
Q Consensus       163 ---~~~~~---~~~~ad~iilv~d~~~~----------~s~~~~~~~~~~l~----------------------------  198 (284)
                         .+...   +++.+|++++|+|+++.          ++++++..|..++.                            
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence               44444   37899999999999862          45555544333331                            


Q ss_pred             ------------h-------------------H--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023316          199 ------------K-------------------W--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  245 (284)
Q Consensus       199 ------------~-------------------~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  245 (284)
                                  .                   +  ....|.|+++|+.|..  +  . .....+.+++++...+++++.+
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~--~--~-~n~~~~~v~~~~~~~~~~~i~~  236 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDG--F--E-NNPYLDRVREIAAKEGAVVVPV  236 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTC--S--S-SCHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccc--c--c-ccHHHHHHHHHHHHcCCCEEEe
Confidence                        0                   0  0124558999999941  1  1 1233677888998889999999


Q ss_pred             cCCC
Q 023316          246 SATH  249 (284)
Q Consensus       246 Sa~~  249 (284)
                      ||+.
T Consensus       237 sA~~  240 (363)
T 1jal_A          237 CAAI  240 (363)
T ss_dssp             CHHH
T ss_pred             chHH
Confidence            9764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.62  E-value=3.7e-15  Score=141.37  Aligned_cols=115  Identities=10%  Similarity=0.064  Sum_probs=76.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC--CC----------------C---cccccceeeeeEEEEECCeEEEEEEEeCCC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE--QE----------------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~--~~----------------~---~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G  157 (284)
                      ...+|+++|++|+|||||+++|+...  +.                .   ...+.|.++......+......+.+|||+|
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            36899999999999999999998631  10                0   001223333222223322336688999999


Q ss_pred             CcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       158 ~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      +++|......+++.+|++|+|+|+++...... ..++..+..  ...|.|+++||+|+.
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRD  147 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCc
Confidence            99999888889999999999999988654322 233333322  234458999999974

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.61  E-value=3.1e-16  Score=142.19  Aligned_cols=154  Identities=14%  Similarity=0.140  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccc-----e----------------------------------------
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAG-----L----------------------------------------  134 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~-----~----------------------------------------  134 (284)
                      .+|+|+|++|+|||||+++|++..+. ....+.+     .                                        
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            49999999999999999999998763 1111110     0                                        


Q ss_pred             -----ee--eeEEEEE-CCeEEEEEEEeCCCCcCC-------------cccccccccCCcEEEEEEeCCChhhHHHHHHH
Q 023316          135 -----NL--INKTLMV-QGARIAFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRCTLNSIVGW  193 (284)
Q Consensus       135 -----~~--~~~~~~~-~~~~~~l~l~Dt~G~e~~-------------~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~  193 (284)
                           .+  ....+.+ ......+.+|||+|..++             ..+...|++++|++|+|+|.++.+...  ..|
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~  192 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA  192 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence                 00  0001111 111234789999999886             456677899999999999876544322  345


Q ss_pred             HHHHHhHCCCC-ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023316          194 YSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM  261 (284)
Q Consensus       194 ~~~l~~~~~~~-~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~  261 (284)
                      +..+....... +.|+|+||+|+.   +.. . ...+.+..++...+.+|+++|+.++.++++.+....
T Consensus       193 ~~l~~~~~~~~~~~i~V~nK~Dl~---~~~-~-~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          193 IKISREVDPSGDRTFGVLTKIDLM---DKG-T-DAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHHSCTTCTTEEEEEECGGGC---CTT-C-CSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHHhcccCCCEEEEEeCCccC---CCc-c-cHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            55555544444 458999999973   221 1 123334445556678999999999999887665533

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.61  E-value=5.2e-15  Score=144.60  Aligned_cols=114  Identities=16%  Similarity=0.104  Sum_probs=81.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC--CC------------Cc-----ccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE------------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~--~~------------~~-----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~  158 (284)
                      ....+|+++|+.|+|||||+++|+...  +.            ..     ...+........+..++  +.+.+|||+|+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence            347899999999999999999998421  10            00     01111122222334444  66889999999


Q ss_pred             cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       159 e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      .+|...+..+++.+|++|+|+|+++..+++....|.. +...  +.|.++++||+|+.
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~  142 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKT  142 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence            9999999999999999999999999888888777764 3332  44568999999974

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.58  E-value=5.7e-18  Score=143.10  Aligned_cols=151  Identities=13%  Similarity=0.108  Sum_probs=87.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeee------------eEEEEEC-CeEEE----------------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLI------------NKTLMVQ-GARIA----------------  149 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~------------~~~~~~~-~~~~~----------------  149 (284)
                      ..||+++|++|||||||+++|+...+.. ..++++.++.            ...+.++ +..+.                
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  117 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD  117 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence            4799999999999999999999876653 3345555544            2333332 22222                


Q ss_pred             ---EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc
Q 023316          150 ---FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  226 (284)
Q Consensus       150 ---l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~  226 (284)
                         +.+.|++|.-..   ...|-...+..+.+.|.........  .....+     ..+.++|+||+|+.    +. ...
T Consensus       118 ~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~----~~-~~~  182 (226)
T 2hf9_A          118 EIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLA----DA-VGA  182 (226)
T ss_dssp             GCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGH----HH-HTC
T ss_pred             CCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccC----ch-hHH
Confidence               334444442100   0011112344556666432111000  001111     23459999999961    11 112


Q ss_pred             hHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          227 IATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       227 ~~~~~~~~a~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      ..++...+++.+  +++++++||++|.|++++|+++...+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          183 DIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             CHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            345566666654  578999999999999999999988764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.58  E-value=2.8e-15  Score=133.02  Aligned_cols=115  Identities=12%  Similarity=0.028  Sum_probs=68.4

Q ss_pred             EEEEEEeCCCCcC-------------CcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCC
Q 023316          148 IAFSIWDVGGDSR-------------SFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKF  213 (284)
Q Consensus       148 ~~l~l~Dt~G~e~-------------~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~  213 (284)
                      ..+.+|||+|..+             +......+++.+|++++|+|.++.. +-.....++..+..  ...+.|+|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            4588999999864             3345566889999999999975432 11111123333321  234558999999


Q ss_pred             CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC---C---CcCHHHHHHHHHHHHhCCcc
Q 023316          214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT---H---NINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       214 Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~---~---~~~v~~lf~~l~~~i~~~~~  269 (284)
                      |+.   ... .. ..+.+.......+..++++|+.   +   +.|+.++++.+...+...++
T Consensus       209 Dl~---~~~-~~-~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          209 DLM---DKG-TD-AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             TSS---CSS-CC-CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             ccC---Ccc-hH-HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            973   221 11 1222221111223567776554   4   68899999999888876654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.57  E-value=1.3e-14  Score=141.90  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=81.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC--CC------------Cccc---ccceee--eeEEEEEC-----CeEEEEEEEe
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE--QE------------RSLQ---MAGLNL--INKTLMVQ-----GARIAFSIWD  154 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~--~~------------~~~~---t~~~~~--~~~~~~~~-----~~~~~l~l~D  154 (284)
                      ...+|+++|+.++|||||+++|+...  +.            ...+   ..|.++  ....+.++     +..+.+.|||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            35799999999999999999997531  11            0000   111122  11223332     3447899999


Q ss_pred             CCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       155 t~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      |+|+++|......+++.+|++|+|+|+++..+.+....|.. +..  .+.|+++++||+|+.
T Consensus        89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRM  147 (704)
T ss_pred             CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCcc
Confidence            99999999999999999999999999998877666655643 322  244558999999964

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.57  E-value=1.1e-14  Score=142.23  Aligned_cols=113  Identities=15%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc--CCCC------------Cc-----ccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE------------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~--~~~~------------~~-----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e  159 (284)
                      ...+|+++|.+|+|||||+++|+.  ..+.            ..     ...+........+.+++  ..+.+|||+|+.
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~   86 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHV   86 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCc
Confidence            368999999999999999999985  2221            00     01111122223344454  568899999999


Q ss_pred             CCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       160 ~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      +|......+++.+|++|+|+|+++..+++....|.. +...  ..|.|+|+||+|+.
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~  140 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKL  140 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence            999989999999999999999999888877766654 4332  44568999999974

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.56  E-value=5.6e-15  Score=124.16  Aligned_cols=153  Identities=10%  Similarity=0.029  Sum_probs=92.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeee------------eEEEEECC------------------eEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLI------------NKTLMVQG------------------ARI  148 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~------------~~~~~~~~------------------~~~  148 (284)
                      ..+|+++|.+|||||||+++|++..... ....+..++.            ...+.++.                  ...
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            4689999999999999999998753211 0111111110            01111111                  124


Q ss_pred             EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  228 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~  228 (284)
                      .+.+|||+|+-....   .+...++.+++|+|+++....  ...+...+     ..+.++|+||+|+.    +. .....
T Consensus       110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~-----~~~~iiv~NK~Dl~----~~-~~~~~  174 (221)
T 2wsm_A          110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEIF-----RVADLIVINKVALA----EA-VGADV  174 (221)
T ss_dssp             SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHHH-----HTCSEEEEECGGGH----HH-HTCCH
T ss_pred             CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhhh-----hcCCEEEEecccCC----cc-hhhHH
Confidence            577999999621111   122367889999998765421  11222221     24558999999961    11 11123


Q ss_pred             HHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          229 TQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       229 ~~~~~~a~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ++...+++..  +++++++||++|.|++++|+++...+...
T Consensus       175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            4455555554  47899999999999999999999887544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.55  E-value=2.2e-16  Score=142.75  Aligned_cols=155  Identities=15%  Similarity=0.110  Sum_probs=88.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-Cc------ccc----------------------c------------------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS------LQM----------------------A------------------  132 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~------~~t----------------------~------------------  132 (284)
                      ..+|+|+|++|||||||+|+|++.++. ..      .|+                      +                  
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            579999999999999999999998864 11      122                      0                  


Q ss_pred             ---ceeeeeEEEEECCe-EEEEEEEeCCCCcC-------------CcccccccccCCcEEEEE-EeCCChhhHHHHHHHH
Q 023316          133 ---GLNLINKTLMVQGA-RIAFSIWDVGGDSR-------------SFDHVPIACKDAVAILFM-FDLTSRCTLNSIVGWY  194 (284)
Q Consensus       133 ---~~~~~~~~~~~~~~-~~~l~l~Dt~G~e~-------------~~~~~~~~~~~ad~iilv-~d~~~~~s~~~~~~~~  194 (284)
                         |.......+.+.+. ...+.||||+|...             +..+...|++.++.+|++ .|.+....-.+...++
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~  190 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA  190 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence               00000111112111 24588999999743             334566677776655554 5554422212222233


Q ss_pred             HHHHhHCCC-CceEEEEeCCCCCCCCCCCcccchHHHHH--HHHHHcC-CcEEEEcCCCCcCHHHHHHHHHH
Q 023316          195 SEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQAR--AYAKAMK-ATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       195 ~~l~~~~~~-~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~a~~~~-~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      ..   ..+. .+.|+|+||+|+.+   .. ... .+..+  .+....+ .+++.+||+++.|++++|+.+..
T Consensus       191 ~~---~~~~~~~~i~V~NK~Dl~~---~~-~~~-~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          191 KE---VDPQGQRTIGVITKLDLMD---EG-TDA-RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HH---HCTTCTTEEEEEECGGGSC---TT-CCC-HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HH---hCcCCCceEEEeccccccC---cc-hhH-HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            33   3333 34489999999732   11 111 11111  0111122 24567999999999999999876

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.54  E-value=1.9e-14  Score=130.35  Aligned_cols=154  Identities=12%  Similarity=0.083  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-Cccc--ccceeeeeEEEEECC-------------------eEEEEEEEeCCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQG-------------------ARIAFSIWDVGGD  158 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~-------------------~~~~l~l~Dt~G~  158 (284)
                      ++|+++|.+|||||||++++++.... ..++  |+..+..  ...+.+                   ....+++|||+|+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            58999999999999999999987643 4444  2332222  223322                   2356889999999


Q ss_pred             cCCc----ccccc---cccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH------------------------
Q 023316          159 SRSF----DHVPI---ACKDAVAILFMFDLTSR----------CTLNSIVGWYSEA------------------------  197 (284)
Q Consensus       159 e~~~----~~~~~---~~~~ad~iilv~d~~~~----------~s~~~~~~~~~~l------------------------  197 (284)
                      .++.    .+...   +++.+|++++|+|+++.          +.+.++..+..+|                        
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~  159 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE  159 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence            8753    34333   47899999999999852          3333332221111                        


Q ss_pred             -----------HhH--C----------------------C-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023316          198 -----------RKW--N----------------------Q-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT  241 (284)
Q Consensus       198 -----------~~~--~----------------------~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~  241 (284)
                                 ..+  .                      - ..|.|+++||.|.  ++.....+...+.++++++..+++
T Consensus       160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~--d~~~~~~n~~~~~v~~~a~~~g~~  237 (368)
T 2dby_A          160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEE--DLPDGRGNPQVEAVRRKALEEGAE  237 (368)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGG--GTTTCTTCHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHH--hhcccchhhHHHHHHHHHHHcCCe
Confidence                       000  0                      1 1355899999983  111111133467788899988999


Q ss_pred             EEEEcCCCCcCHHHHHH
Q 023316          242 LFFSSATHNINVNKIFK  258 (284)
Q Consensus       242 ~~~~Sa~~~~~v~~lf~  258 (284)
                      ++++||++..++.+++.
T Consensus       238 vv~iSAk~E~el~eL~~  254 (368)
T 2dby_A          238 VVVVSARLEAELAELSG  254 (368)
T ss_dssp             EEEECHHHHHHHHTSCH
T ss_pred             EEEeechhHHHHHHhch
Confidence            99999998666655443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.50  E-value=1.7e-14  Score=130.48  Aligned_cols=103  Identities=11%  Similarity=0.044  Sum_probs=67.3

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  227 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~  227 (284)
                      +.+.||||+|...   .....+..+|++|+|+|.+..+.++.+..++       ...+.++|+||+|+    ..  ....
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~-------~~~p~ivVlNK~Dl----~~--~~~~  235 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGV-------LELADIVVVNKADG----EH--HKEA  235 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTS-------GGGCSEEEEECCCG----GG--HHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhH-------hhcCCEEEEECCCC----cC--hhHH
Confidence            5678999999543   2223458999999999987765543322111       12355899999995    11  1111


Q ss_pred             HHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          228 ATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       228 ~~~~~~~a~~----------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      .....++.+.          ++.+++.+||++|.|++++++++...+..
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1112222222          15789999999999999999999887743

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.45  E-value=1.9e-13  Score=136.22  Aligned_cols=114  Identities=13%  Similarity=0.119  Sum_probs=84.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC------------CCCc-----cc--ccceeeeeEEEE------------ECCeE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE------------QERS-----LQ--MAGLNLINKTLM------------VQGAR  147 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~------------~~~~-----~~--t~~~~~~~~~~~------------~~~~~  147 (284)
                      ...||+|+|+.++|||||+++|+...            +...     ..  |+........+.            .++..
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            36799999999999999999998641            1110     11  222222222222            24557


Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      +.+.||||+|+++|...+..+++.+|++|+|+|+++..+++....|.....   ...|+|+++||+|+
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~  162 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDR  162 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCc
Confidence            889999999999999999999999999999999999988888777765442   24566899999996

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.40  E-value=1.1e-12  Score=115.90  Aligned_cols=99  Identities=8%  Similarity=0.009  Sum_probs=79.9

Q ss_pred             CCcCCcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH
Q 023316          157 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA  235 (284)
Q Consensus       157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a  235 (284)
                      .++++..+.+.+++++|++++|||+++++ +++.+..|+..+..  .+.|+|+|+||+||   .+ +......++..+++
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL---~~-~~~v~~~~~~~~~~  138 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDL---LN-EEEKKELERWISIY  138 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGG---CC-HHHHHHHHHHHHHH
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccC---CC-ccccHHHHHHHHHH
Confidence            48889999999999999999999999986 89999999987765  35566999999996   22 11101135566777


Q ss_pred             HHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023316          236 KAMKATLFFSSATHNINVNKIFKFIM  261 (284)
Q Consensus       236 ~~~~~~~~~~Sa~~~~~v~~lf~~l~  261 (284)
                      +..+.+++++||++|.|++++|..+.
T Consensus       139 ~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          139 RDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            77899999999999999999998754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.39  E-value=2.3e-13  Score=129.64  Aligned_cols=114  Identities=16%  Similarity=0.053  Sum_probs=77.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC----Ccccccce----eeeeE-EEEEC-----------------C------eE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE----RSLQMAGL----NLINK-TLMVQ-----------------G------AR  147 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~----~~~~t~~~----~~~~~-~~~~~-----------------~------~~  147 (284)
                      ..+|+|+|.+|+|||||+|+|++.++.    ...+++..    ..... .+..+                 |      ..
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~  144 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM  144 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence            579999999999999999999998863    33333311    00000 00000                 0      00


Q ss_pred             ---------EEEEEEeCCCCcC-----------CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE
Q 023316          148 ---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI  207 (284)
Q Consensus       148 ---------~~l~l~Dt~G~e~-----------~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I  207 (284)
                               ..+.+|||+|...           |......++..+|++|+|+|+++....+....|++.+...  ..+.+
T Consensus       145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvi  222 (550)
T 2qpt_A          145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIR  222 (550)
T ss_dssp             EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEE
T ss_pred             EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEE
Confidence                     2478999999875           3345566788999999999998865556667777776432  23558


Q ss_pred             EEEeCCCC
Q 023316          208 LIGTKFDD  215 (284)
Q Consensus       208 lv~nK~Dl  215 (284)
                      +|+||+|+
T Consensus       223 lVlNK~Dl  230 (550)
T 2qpt_A          223 VVLNKADM  230 (550)
T ss_dssp             EEEECGGG
T ss_pred             EEEECCCc
Confidence            99999996

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.39  E-value=2.3e-13  Score=122.72  Aligned_cols=101  Identities=11%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  227 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~  227 (284)
                      +.+.++||+|....   .......+|++++|+|.++....+.+..   .+    ...+.++|+||+|+    .+.  ...
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl----~~~--~~~  230 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDG----DLI--VPA  230 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSG----GGH--HHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecC----CCc--hhH
Confidence            45679999996421   2334678999999999987543322211   11    12345899999995    111  000


Q ss_pred             HHHHHHHHH----------HcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          228 ATQARAYAK----------AMKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       228 ~~~~~~~a~----------~~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      ......+..          ..+.+++.+||++|.|+++++++|...+
T Consensus       231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            111222221          1245788999999999999999998765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.33  E-value=6.3e-13  Score=119.54  Aligned_cols=104  Identities=11%  Similarity=0.012  Sum_probs=62.7

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc-c
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW-T  226 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~-~  226 (284)
                      +.+.||||+|......   ...+.+|++++|+|.++.+.++.+...   ..    ..+.++|+||+|+    ...... .
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~~----~~p~ivv~NK~Dl----~~~~~~~~  214 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---LM----EVADLIVINKDDG----DNHTNVAI  214 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---HH----HHCSEEEECCCCT----TCHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---hh----cccCEEEEECCCC----CChHHHHH
Confidence            4578999999765432   246899999999998765432211111   11    1244899999996    211010 0


Q ss_pred             hHHHHHHHHHHc-------CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          227 IATQARAYAKAM-------KATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       227 ~~~~~~~~a~~~-------~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      ..++.+......       ..+++.+||++|.|++++++++...+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            011222222222       357889999999999999999988764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.31  E-value=3.3e-12  Score=110.00  Aligned_cols=112  Identities=10%  Similarity=0.018  Sum_probs=65.8

Q ss_pred             EEEEEEeCCCCcCCccccc------ccccCCcEEEEEEeCCChhhHHHHH---HHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVP------IACKDAVAILFMFDLTSRCTLNSIV---GWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~------~~~~~ad~iilv~d~~~~~s~~~~~---~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      +.+.+|||+|+..+.....      .++.+ ++++++.|.....+..+..   .+..... .....|.++|+||+|+.  
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~--  184 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLL--  184 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGC--
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccc--
Confidence            4688999999987543322      14466 8888888875433322222   1111111 11234558999999962  


Q ss_pred             CCCCccc-chHH---HHH----H-----------------HHHHcC--CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          219 LPPDLQW-TIAT---QAR----A-----------------YAKAMK--ATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       219 ~~~~~~~-~~~~---~~~----~-----------------~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                        ...+. ...+   +..    .                 +++.++  ++++++||+++.|++++|+++.+.+.
T Consensus       185 --~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          185 --SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             --CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             --ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence              11110 0011   000    1                 123433  48999999999999999999987763

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.28  E-value=3.2e-11  Score=109.27  Aligned_cols=155  Identities=13%  Similarity=0.141  Sum_probs=100.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----ccccc---cccC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVPI---ACKD  171 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----~~~~~---~~~~  171 (284)
                      ..+|.++|.||||||||+|++++.+.. .+++.++.+.....+.+++..  +++.||+|...-.    .+...   .++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            368999999999999999999998766 778877777777788888865  6799999976432    22223   3578


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEeCCCCCCC-C--CCCcccchHHHHHHHHHHcCCcEEEE
Q 023316          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVR-L--PPDLQWTIATQARAYAKAMKATLFFS  245 (284)
Q Consensus       172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~---~~~~~Ilv~nK~Dl~~~-~--~~~~~~~~~~~~~~~a~~~~~~~~~~  245 (284)
                      ||++++|.|++++.  ........+|..+.   ...|++++.||.|...- +  .........++.+.+...+.+..-.+
T Consensus       150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            99999999998764  33344445555442   34566899999994100 0  00001122555666666665533332


Q ss_pred             cCCCCcCHHHHHH
Q 023316          246 SATHNINVNKIFK  258 (284)
Q Consensus       246 Sa~~~~~v~~lf~  258 (284)
                      -...+...+++.+
T Consensus       228 ~~~~nv~eddl~d  240 (376)
T 4a9a_A          228 AFRCDATVDDLID  240 (376)
T ss_dssp             EECSCCCHHHHHH
T ss_pred             eecccCCHHHHHH
Confidence            2334445555543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.22  E-value=5.6e-11  Score=113.14  Aligned_cols=111  Identities=9%  Similarity=0.009  Sum_probs=78.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC------------------CCCCcc-----cccceeeeeEEEEECCeEEEEEEEeCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN------------------EQERSL-----QMAGLNLINKTLMVQGARIAFSIWDVG  156 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~------------------~~~~~~-----~t~~~~~~~~~~~~~~~~~~l~l~Dt~  156 (284)
                      .-+|+|+|..++|||||..+++..                  .+.+..     ..+.+......+.+++  ..+.|.||+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTP  108 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTP  108 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCC
Confidence            568999999999999999999521                  111111     1222222333445555  567899999


Q ss_pred             CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      |+.+|..-....++-+|++|+|+|+...-.-+...-|.... ++  ..|+|++.||+|.
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~--~lp~i~fINK~Dr  164 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR--ATPVMTFVNKMDR  164 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT--TCCEEEEEECTTS
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh--CCceEEEEecccc
Confidence            99999999999999999999999998876666666664443 32  4466899999995

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.22  E-value=6.6e-12  Score=114.33  Aligned_cols=87  Identities=14%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCe---------------EEEEEEEeCCCCcCCcc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSFD  163 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~e~~~~  163 (284)
                      .++|.++|.+|||||||+|++++..+. ..+++++.+.....+.+++.               ...+++|||+|+.++..
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            579999999999999999999998776 66675665555666666553               23589999999987553


Q ss_pred             -------cccccccCCcEEEEEEeCCChhh
Q 023316          164 -------HVPIACKDAVAILFMFDLTSRCT  186 (284)
Q Consensus       164 -------~~~~~~~~ad~iilv~d~~~~~s  186 (284)
                             ....+++++|++++|+|+++.++
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence                   23456789999999999986544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.14  E-value=2.4e-11  Score=118.80  Aligned_cols=157  Identities=18%  Similarity=0.117  Sum_probs=92.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--Ccccccc------------------------------------------
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG------------------------------------------  133 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~------------------------------------------  133 (284)
                      ....+|+|+|.+++|||||+|++++..+.  ..-.++.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            44679999999999999999999998762  2111110                                          


Q ss_pred             ------eeeeeEEEEEC-CeEEEEEEEeCCCCcCC-------------cccccccc-cCCcEEEEEEeCCChhhHHHHHH
Q 023316          134 ------LNLINKTLMVQ-GARIAFSIWDVGGDSRS-------------FDHVPIAC-KDAVAILFMFDLTSRCTLNSIVG  192 (284)
Q Consensus       134 ------~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~-------------~~~~~~~~-~~ad~iilv~d~~~~~s~~~~~~  192 (284)
                            +......+.+. .....+.|+||+|....             ..+...|+ ..+|++++|.|.+...+-++...
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                  00000111110 01123679999997552             12333344 58899999999987544333323


Q ss_pred             HHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----cC-CcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          193 WYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----MK-ATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       193 ~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~----~~-~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      ++..+..  ...|.|+|.||+|+.   +.... . .. ... .+.    .+ .+++.+||++|.|++++++.+...
T Consensus       209 ll~~L~~--~g~pvIlVlNKiDlv---~~~~~-~-~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVDP--QGQRTIGVITKLDLM---DEGTD-A-RD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHCT--TCSSEEEEEECTTSS---CTTCC-S-HH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHh--cCCCEEEEEeCcccC---Ccchh-h-HH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            4444432  134558999999973   22211 1 11 111 011    12 245569999999999999998873

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.11  E-value=2.7e-10  Score=102.10  Aligned_cols=102  Identities=15%  Similarity=0.072  Sum_probs=60.6

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  227 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~  227 (284)
                      ..+.++||+|...-.   ......+|.+++++|....+..+.+..+..+       .+.+++.||+|+.   +..  ...
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~-------~~~ivvlNK~Dl~---~~~--~~s  212 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE-------LADMIAVNKADDG---DGE--RRA  212 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH-------HCSEEEEECCSTT---CCH--HHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHhc-------cccEEEEEchhcc---Cch--hHH
Confidence            457799999976422   1234789999999998654332222111111       1337777999951   111  111


Q ss_pred             HHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          228 ATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       228 ~~~~~~~a~~----------~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      ....+.+...          ++.+++.+||+++.|++++++.+....
T Consensus       213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            1222333221          145788999999999999999988765

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.08  E-value=1.2e-09  Score=99.64  Aligned_cols=84  Identities=15%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCC-C-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCCc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF  162 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~~  162 (284)
                      ..+|.++|.+|||||||+|.+++... . ..+|.++.+.....+.+++..               ..+.+||++|.....
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            57999999999999999999999876 4 677766666666777777621               357899999965422


Q ss_pred             c-------cccccccCCcEEEEEEeCCC
Q 023316          163 D-------HVPIACKDAVAILFMFDLTS  183 (284)
Q Consensus       163 ~-------~~~~~~~~ad~iilv~d~~~  183 (284)
                      .       .....++.+|++++|+|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1       22334689999999999864

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.07  E-value=9.4e-11  Score=113.60  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC--CC------------CCccc---ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN--EQ------------ERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD  163 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~--~~------------~~~~~---t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~  163 (284)
                      .+|+++|...+|||||..+++..  ..            .+..+   .-|+++....+.+.-....+.|.||+|+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            36899999999999999998521  11            01000   013333333332322335578999999999999


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      .....++-+|++|+|+|+...-.-+...-|.... ++  ..|+|++.||+|.
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~-~~--~lp~i~~INKmDr  131 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALR-KM--GIPTIFFINKIDQ  131 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHH-HH--TCSCEECCEECCS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHH-Hc--CCCeEEEEecccc
Confidence            9999999999999999998765544444554433 33  3466899999995

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.01  E-value=3.8e-09  Score=103.60  Aligned_cols=113  Identities=18%  Similarity=0.150  Sum_probs=78.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC--------C------CCCcc---cccceeeee--EEEEECC-----eEEEEEEEeC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN--------E------QERSL---QMAGLNLIN--KTLMVQG-----ARIAFSIWDV  155 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~--------~------~~~~~---~t~~~~~~~--~~~~~~~-----~~~~l~l~Dt  155 (284)
                      .-+|+|+|...+|||||..+|+..        +      +.+..   .--|+++.+  .++.+.+     ..+.+.|.||
T Consensus        13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT   92 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT   92 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence            458999999999999999998521        1      11110   111333333  2333332     3578999999


Q ss_pred             CCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       156 ~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      +|+.+|..-....++-+|++|+|+|+...-.-+...-|.+..+.   +.|+|++.||+|.
T Consensus        93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr  149 (709)
T 4fn5_A           93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDR  149 (709)
T ss_dssp             CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSS
T ss_pred             CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccc
Confidence            99999999999999999999999999887666665566555443   4567999999995

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.00  E-value=9.9e-11  Score=96.91  Aligned_cols=106  Identities=9%  Similarity=0.072  Sum_probs=63.3

Q ss_pred             CCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---HC--CCCce-EEEEeCC-CCCCCCCCCcccch
Q 023316          155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK---WN--QTAIP-ILIGTKF-DDFVRLPPDLQWTI  227 (284)
Q Consensus       155 t~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~---~~--~~~~~-Ilv~nK~-Dl~~~~~~~~~~~~  227 (284)
                      .+||+.++.+|+.||.++|++|+|+|.+|++-++ ...-+.++..   ..  ....| +|.+||. |+...++.      
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~------  181 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC------  181 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH------
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH------
Confidence            4589999999999999999999999999986544 3332322221   11  13344 6788995 65222211      


Q ss_pred             HHHHHHHH---HHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          228 ATQARAYA---KAMKATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       228 ~~~~~~~a---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      .+..+.+.   ....+.++.|||.+|+|+.+.++|++..+..+
T Consensus       182 ~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          182 FYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            11111110   02345677899999999999999999877544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.97  E-value=5.7e-10  Score=101.18  Aligned_cols=102  Identities=16%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cchHHHHHHHH
Q 023316          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYA  235 (284)
Q Consensus       157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a  235 (284)
                      .+++|+.+.+.+++.++++++|+|++++.     ..|...+.++..+.|.|+|+||+||   ++.... ....+....++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL---~~~~~~~~~~~~~l~~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADL---IPKSVKHDKVKHWMRYSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGG---SCTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhc---CCcccCHHHHHHHHHHHH
Confidence            56789999999999999999999999854     4677778777666677899999997   332211 11133344456


Q ss_pred             HHcCC---cEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          236 KAMKA---TLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       236 ~~~~~---~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      +..|.   +++++||++|.|++++++.+......
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~  160 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRGG  160 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTT
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhccc
Confidence            77787   78999999999999999999776533

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.85  E-value=1.8e-09  Score=97.98  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=76.2

Q ss_pred             CCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cchHHHHHHH
Q 023316          156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAY  234 (284)
Q Consensus       156 ~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~  234 (284)
                      ..+++|+++...++..++++++|+|+++..+     .|..++.++..+.|.|+|+||+||   ++.... ....+....+
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DL---l~~~~~~~~~~~~l~~~  127 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADL---LPRSVKYPKLLRWMRRM  127 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGG---SCTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhc---CCCccCHHHHHHHHHHH
Confidence            3588899999999999999999999999774     566666666666677899999997   333211 1123334445


Q ss_pred             HHHcCC---cEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          235 AKAMKA---TLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       235 a~~~~~---~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      ++..|.   +++.+||++|.|++++++.+......
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~  162 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG  162 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence            667776   68999999999999999999876543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.85  E-value=1.4e-09  Score=94.21  Aligned_cols=107  Identities=7%  Similarity=0.032  Sum_probs=68.1

Q ss_pred             CCCCcCCcccccccccCCcEEEEEEeCCChhhHH---HHHHHHHHHHhH--CCCCceEEEEeC-CCCCCCCCCCcccchH
Q 023316          155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN---SIVGWYSEARKW--NQTAIPILIGTK-FDDFVRLPPDLQWTIA  228 (284)
Q Consensus       155 t~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~---~~~~~~~~l~~~--~~~~~~Ilv~nK-~Dl~~~~~~~~~~~~~  228 (284)
                      .+||+..+.+|+.||.++|++|+|+|.+|++-++   ++.+....+.+.  ..+.|.+|.+|| .|+...++.      .
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~------~  267 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC------F  267 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH------H
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH------H
Confidence            4789999999999999999999999999987544   222221222121  134455688897 575222221      1


Q ss_pred             HHHHHHH---HHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          229 TQARAYA---KAMKATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       229 ~~~~~~a---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +..+.+.   ....+.+..|||.+|+|+.|.++|++..+..+
T Consensus       268 EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          268 YLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            1111110   01345677899999999999999999988554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.46  E-value=5.8e-07  Score=82.50  Aligned_cols=142  Identities=12%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCC-ccc--ccceeeeeEEEEE--CCeEEEEEEEeCCCCcCCcc-----------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQ--MAGLNLINKTLMV--QGARIAFSIWDVGGDSRSFD-----------  163 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~--t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~e~~~~-----------  163 (284)
                      .++++|+|.+|+|||||++.+.+..+.. ...  +.+.......+..  .+....+.++|+.|......           
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            4679999999999999999999875431 111  1111111111222  22234678999987643210           


Q ss_pred             ---cc----cc---------cccCCc---EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316          164 ---HV----PI---------ACKDAV---AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ  224 (284)
Q Consensus       164 ---~~----~~---------~~~~ad---~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~  224 (284)
                         .+    ..         ...+++   +++++.|....-+-.++ .++..+   ....++|+|.||+|.   ++....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~---Lt~~E~  194 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADA---ISKSEL  194 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGG---SCHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhc---cchHHH
Confidence               00    00         112332   35566666544333332 233333   334455899999995   332211


Q ss_pred             cchHHHHHHHHHHcCCcEEEEcCC
Q 023316          225 WTIATQARAYAKAMKATLFFSSAT  248 (284)
Q Consensus       225 ~~~~~~~~~~a~~~~~~~~~~Sa~  248 (284)
                      ....+..+.-.+..|++++.+|..
T Consensus       195 ~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          195 TKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHHHHcCCcEEecCCC
Confidence            111233333334467888887753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.42  E-value=1.2e-07  Score=89.12  Aligned_cols=149  Identities=15%  Similarity=0.124  Sum_probs=83.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh------cCCCC---C-cccc------------cceeeeeEEEE-------------EC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYV------GNEQE---R-SLQM------------AGLNLINKTLM-------------VQ  144 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~------~~~~~---~-~~~t------------~~~~~~~~~~~-------------~~  144 (284)
                      ...|+++|.+||||||+++++.      +.+..   . .+.+            .++.+......             ..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~  180 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK  180 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence            4679999999999999999998      44321   1 1000            01221110000             00


Q ss_pred             CeEEEEEEEeCCCCcCCcc-cccc---c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCC
Q 023316          145 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFV  217 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e~~~~-~~~~---~--~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~  217 (284)
                      ...+.+.|+||+|...... +...   +  +..+|.+++|+|.+......   .....+.+.   .++ ++|.||+|.. 
T Consensus       181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~---~~i~gvVlNK~D~~-  253 (504)
T 2j37_W          181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK---VDVASVIVTKLDGH-  253 (504)
T ss_dssp             HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH---HCCCCEEEECTTSC-
T ss_pred             HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh---cCceEEEEeCCccc-
Confidence            0234578999999875321 1111   1  22789999999997754321   122223221   243 6999999951 


Q ss_pred             CCCCCcccchHHHHHHHHHHcCCcE------------------EEEcCCCCcC-HHHHHHHHHHH
Q 023316          218 RLPPDLQWTIATQARAYAKAMKATL------------------FFSSATHNIN-VNKIFKFIMAK  263 (284)
Q Consensus       218 ~~~~~~~~~~~~~~~~~a~~~~~~~------------------~~~Sa~~~~~-v~~lf~~l~~~  263 (284)
                         .. .    ..+.......+.|+                  +.+|+.+|.| +.++++++...
T Consensus       254 ---~~-~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          254 ---AK-G----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ---CC-C----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ---cc-h----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence               11 1    11222333445443                  2368999999 99999888765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.39  E-value=4.8e-08  Score=88.49  Aligned_cols=137  Identities=9%  Similarity=0.094  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC------CCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc-------
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN------EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------  166 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~------~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~-------  166 (284)
                      .+|+++|.+|+|||||+|++.+.      ... ...+.++.+  ...+.++..   +.++||+|......+..       
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999986      222 344433322  223444332   67999999764332111       


Q ss_pred             -ccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316          167 -IAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  242 (284)
Q Consensus       167 -~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~  242 (284)
                       .++  +..+.++++.+.....-+..+.. ++.+   .....| +++.||.|.      -...........+.+..|..+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l---~~~~~~~~~v~~k~d~------~~~~~~~~~~~~~~~~~g~~l  307 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYI---KGGRRSFVCYMANELT------VHRTKLEKADSLYANQLGELL  307 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEE---ESSSEEEEEEECTTSC------EEEEEGGGHHHHHHHHBTTTB
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE-EEEc---cCCCceEEEEecCCcc------cccccHHHHHHHHHHhcCCcc
Confidence             122  67889999998743211111110 1111   122344 799999994      112222444555667777766


Q ss_pred             EEEcCCCCcC
Q 023316          243 FFSSATHNIN  252 (284)
Q Consensus       243 ~~~Sa~~~~~  252 (284)
                      ...++.+..+
T Consensus       308 ~p~~~~~~~~  317 (369)
T 3ec1_A          308 SPPSKRYAAE  317 (369)
T ss_dssp             CSSCGGGTTT
T ss_pred             CCCCchhhhh
Confidence            6656554433

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.34  E-value=1.9e-06  Score=78.96  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--Ccccccceeeee-EEEEECCeEEEEEEEeCCCCcCCcccccc-----cccCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLIN-KTLMVQGARIAFSIWDVGGDSRSFDHVPI-----ACKDA  172 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~-~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~-----~~~~a  172 (284)
                      ..++|+|++|+|||||+|.+.+-...  .....-+.+... ..+.-....-.+.+||+.|..........     -+.+.
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            37999999999999999999984332  111111111100 11111111113678999986432111111     13344


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC------CCCCCCcccchHHHHHHHHH----HcC---
Q 023316          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF------VRLPPDLQWTIATQARAYAK----AMK---  239 (284)
Q Consensus       173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~------~~~~~~~~~~~~~~~~~~a~----~~~---  239 (284)
                      +.+++ +|..... -+.+ .+...+...  ..+.++|.||.|+.      ..++...+....+..+++.+    +.|   
T Consensus       150 ~~~~~-lS~G~~~-kqrv-~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~  224 (413)
T 1tq4_A          150 DFFII-ISATRFK-KNDI-DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE  224 (413)
T ss_dssp             SEEEE-EESSCCC-HHHH-HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCeEE-eCCCCcc-HHHH-HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            55555 7765211 1111 122223221  34558999999952      12233333333445555542    332   


Q ss_pred             CcEEEEcC--CCCcCHHHHHHHHHHHHhCCccc
Q 023316          240 ATLFFSSA--THNINVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       240 ~~~~~~Sa--~~~~~v~~lf~~l~~~i~~~~~~  270 (284)
                      ...+.+|+  .++.|++++.+.+...+.+.++.
T Consensus       225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~  257 (413)
T 1tq4_A          225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH  257 (413)
T ss_dssp             CCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred             CcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence            36788899  56667999999998887665543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.32  E-value=1.2e-06  Score=75.89  Aligned_cols=138  Identities=13%  Similarity=0.139  Sum_probs=70.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--Cccccccee----eeeEEEEE----CCeEEEEEEEeCCCCcCCcc------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLN----LINKTLMV----QGARIAFSIWDVGGDSRSFD------  163 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~----~~~~~~~~----~~~~~~l~l~Dt~G~e~~~~------  163 (284)
                      .++++|+|+.|+|||||++.+.+....  ....-.|.+    .....+.+    .+....+.++|+.|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            578999999999999999999875432  111000000    00011111    12223578999988532110      


Q ss_pred             -c---------------------ccccccCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          164 -H---------------------VPIACKDAVAILFMFDLT-SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       164 -~---------------------~~~~~~~ad~iilv~d~~-~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                       +                     .+..+..+++.+++.|-. ..-+-.+ ...+..+.+   ....|+|.||+|.   +.
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~---lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADT---MT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGG---SC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEecccc---CC
Confidence             0                     011223468888888854 2222222 234444443   2455899999995   33


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEE
Q 023316          221 PDLQWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~  244 (284)
                      ........+..+...+.+++.+|.
T Consensus       155 ~~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          155 LEEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHcCccccC
Confidence            222212234445555667777664

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.31  E-value=2.7e-07  Score=79.63  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=36.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      ++++++|.+|||||||+|++.+.......++.|.+.....+.++.   .+.+|||+|...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            699999999999999999999887642222333333333333332   467999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.29  E-value=3.7e-08  Score=89.22  Aligned_cols=133  Identities=9%  Similarity=0.066  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC------CC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc----c-
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE------QE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP----I-  167 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~----~-  167 (284)
                      .+|+++|.+|+|||||+|++.+..      ..  ...+.++  .....+.+++.   +.++||+|......+..    . 
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            579999999999999999998853      11  2233222  22233444332   67999999865432211    1 


Q ss_pred             ---c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316          168 ---A--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  242 (284)
Q Consensus       168 ---~--~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~  242 (284)
                         +  .+..+.++++.|.....-+..+.. ++.+.  ....+.+++.||.|.      -...........+.+..|..+
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~------~~~~~~~~~~~~~~~~~g~~l  306 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLT------IHRTKLEKADELYKNHAGDLL  306 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSC------EEEEEHHHHHHHHHHHBTTTB
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccc------cccccHHHHHHHHHHHhCCcc
Confidence               1  256778888887632211111110 01111  112344799999994      122223444555666677655


Q ss_pred             EEEcC
Q 023316          243 FFSSA  247 (284)
Q Consensus       243 ~~~Sa  247 (284)
                      +..++
T Consensus       307 ~p~~~  311 (368)
T 3h2y_A          307 SPPTP  311 (368)
T ss_dssp             CSSCH
T ss_pred             CCCch
Confidence            54444

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.22  E-value=1.1e-06  Score=76.53  Aligned_cols=98  Identities=12%  Similarity=0.002  Sum_probs=67.0

Q ss_pred             eCCCCcC-CcccccccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHH
Q 023316          154 DVGGDSR-SFDHVPIACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ  230 (284)
Q Consensus       154 Dt~G~e~-~~~~~~~~~~~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~  230 (284)
                      ..+|+.. ........+..+|+++.|+|+.++.+..  .+..|+       ...+.++|+||+||   .+.    ...+.
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL---~~~----~~~~~   70 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADK---ADA----AVTQQ   70 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGG---SCH----HHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECccc---CCH----HHHHH
Confidence            4577653 3344555789999999999999987764  344443       45566999999997   221    11223


Q ss_pred             HHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          231 ARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       231 ~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      ..++.+..+.+++.+||+++.|++++++.+...+.
T Consensus        71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            34444556789999999999999999998877664

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.19  E-value=1.2e-06  Score=76.44  Aligned_cols=57  Identities=11%  Similarity=0.122  Sum_probs=36.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      ..++|+++|.+|||||||+|++.+....  ...+.++.+..  .+.++.   .+.+|||+|...
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcCC
Confidence            3689999999999999999999987744  44443322222  233332   367999999854

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.05  E-value=4.6e-08  Score=91.41  Aligned_cols=101  Identities=12%  Similarity=0.007  Sum_probs=64.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC--Ccccc--------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHV--------PIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~--~~~~~--------~~~~  169 (284)
                      .++|+++|.+|+||||+.++|...-.....++.+++.........+......+||..|++.  .+..+        ..++
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l  118 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL  118 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999987542212222333221111111112223346899999843  23332        5567


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  201 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~  201 (284)
                      ..+.+.++|+|.++. +.+....|++.+++..
T Consensus       119 ~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~  149 (469)
T 1bif_A          119 SEEGGHVAVFDATNT-TRERRAMIFNFGEQNG  149 (469)
T ss_dssp             HTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred             HhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence            678899999999987 5677778888777653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.91  E-value=1.8e-05  Score=72.87  Aligned_cols=141  Identities=16%  Similarity=0.116  Sum_probs=77.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc------CCCC----Cccc------------ccceeeeeEEEEEC-------------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG------NEQE----RSLQ------------MAGLNLINKTLMVQ-------------  144 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~------~~~~----~~~~------------t~~~~~~~~~~~~~-------------  144 (284)
                      ...|+++|.+|+||||++..+..      .+..    +.+.            ..+..+.......+             
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999998862      2211    1110            01111111000000             


Q ss_pred             CeEEEEEEEeCCCCcCCcc-----ccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          145 GARIAFSIWDVGGDSRSFD-----HVP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e~~~~-----~~~-~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      ...+.+.|.||+|......     +.. .....+|.+++|.|.+....-.+   ....+.+.  -.+..+|.||+|.   
T Consensus       180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~--~~i~gVIlTKlD~---  251 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA--TPIGSIIVTKLDG---  251 (443)
T ss_dssp             HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS--CTTEEEEEECCSS---
T ss_pred             hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh--CCCeEEEEECCCC---
Confidence            0125677999999654321     111 11236789999999876433222   22233221  2233699999994   


Q ss_pred             CCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                         . .  ....+.......+.|+.+++.  |++++++
T Consensus       252 ---~-~--~gG~~ls~~~~~g~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          252 ---S-A--KGGGALSAVAATGAPIKFIGT--GEKIDDI  281 (443)
T ss_dssp             ---C-S--SHHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred             ---c-c--cccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence               1 1  123345556678899888775  6665443

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.77  E-value=2.2e-05  Score=74.99  Aligned_cols=64  Identities=14%  Similarity=0.095  Sum_probs=39.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-cc-ceeeeeEEE--EE-CCeEEEEEEEeCCCCcCC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MA-GLNLINKTL--MV-QGARIAFSIWDVGGDSRS  161 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~-~~~~~~~~~--~~-~~~~~~l~l~Dt~G~e~~  161 (284)
                      ....+|+|+|.+|||||||+|++.+....-..+ ++ +.....+.+  .+ ......+.++||+|....
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            346889999999999999999999987431122 11 111111111  11 112234679999998653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.76  E-value=2.9e-05  Score=71.59  Aligned_cols=84  Identities=17%  Similarity=0.069  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCCcCCcc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC-c-eEEEEeCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-I-PILIGTKFDDFVRL  219 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~~~-----~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~-~-~Ilv~nK~Dl~~~~  219 (284)
                      +.+.|.||+|...... +..     ..+..+|.+++|.|.+....   .......+   .... + ..+|.||+|.    
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~~~~~i~gvVlnK~D~----  250 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KEAVGEIGSIIVTKLDG----  250 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HTTSCSCEEEEEECSSS----
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hhcccCCeEEEEeCCCC----
Confidence            4577999999765311 111     11236899999999865432   22222222   2233 4 3699999994    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316          220 PPDLQWTIATQARAYAKAMKATLFFSS  246 (284)
Q Consensus       220 ~~~~~~~~~~~~~~~a~~~~~~~~~~S  246 (284)
                      ..   .  ...+..+....+.++.+++
T Consensus       251 ~~---~--~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          251 SA---K--GGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             CS---T--THHHHHHHHHSSCCEEEEC
T ss_pred             cc---c--hHHHHHHHHHHCCCEEEee
Confidence            11   1  1223446667787776653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.68  E-value=3.4e-05  Score=67.63  Aligned_cols=92  Identities=15%  Similarity=0.128  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCCcC--Ccc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCC
Q 023316          148 IAFSIWDVGGDSR--SFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVR  218 (284)
Q Consensus       148 ~~l~l~Dt~G~e~--~~~-~~~-----~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~  218 (284)
                      +.+.+.||+|...  ... +..     .....+|.+++|.|.+...   +.......+..   ..+ ..+|.||.|.   
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~---~~~i~gvVlnk~D~---  251 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ---ASKIGTIIITKMDG---  251 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH---TCTTEEEEEECGGG---
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh---hCCCCEEEEeCCCC---
Confidence            4577999999876  311 111     1234789999999986432   22222233322   233 3589999993   


Q ss_pred             CCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                       .     .....+..++...+.++.+++  +|++++++
T Consensus       252 -~-----~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          252 -T-----AKGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             -C-----TTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             -C-----cchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence             1     113345567778899988876  57777654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.66  E-value=2.9e-05  Score=68.33  Aligned_cols=94  Identities=10%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             CCcccccccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc
Q 023316          160 RSFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM  238 (284)
Q Consensus       160 ~~~~~~~~~~~~ad~iilv~d~~~~~s-~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~  238 (284)
                      +...+.+....++|.+++|+|+.++.. ...+.+++..+.  ....+|+||.||+||   .++.......+...++.+..
T Consensus        75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL---~~~~~~~~~~~~~~~~y~~~  149 (307)
T 1t9h_A           75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDL---IEDQDTEDTIQAYAEDYRNI  149 (307)
T ss_dssp             CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGG---CCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCcc---CchhhhHHHHHHHHHHHHhC
Confidence            334455567889999999999987654 444455554332  345677999999997   22211000123334444556


Q ss_pred             CCcEEEEcCCCCcCHHHHHH
Q 023316          239 KATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       239 ~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |.+.+.+||.++.|+++++.
T Consensus       150 g~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          150 GYDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             TCCEEECCHHHHTTCTTTGG
T ss_pred             CCeEEEEecCCCCCHHHHHh
Confidence            88999999999888776654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.58  E-value=3.4e-05  Score=66.34  Aligned_cols=90  Identities=8%  Similarity=0.017  Sum_probs=59.1

Q ss_pred             CCCcCC-cccccccccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHH
Q 023316          156 GGDSRS-FDHVPIACKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR  232 (284)
Q Consensus       156 ~G~e~~-~~~~~~~~~~ad~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~  232 (284)
                      +|+... .......+.++|++|+|+|+.++.+..+  +. |+        ..++|+|.||+||   .+.    ...+...
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL---~~~----~~~~~~~   68 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDI---ADE----KTTKKWV   68 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGG---SCH----HHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccC---CCH----HHHHHHH
Confidence            555432 2344556789999999999998876542  22 21        4566999999997   221    1122334


Q ss_pred             HHHHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316          233 AYAKAMKATLFFSSATHNINVNKIFKFIMA  262 (284)
Q Consensus       233 ~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~  262 (284)
                      ++.++.|.++ .+||+++.|++++++.+..
T Consensus        69 ~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           69 EFFKKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            4455568888 9999999999998877643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.54  E-value=5.1e-05  Score=69.82  Aligned_cols=91  Identities=16%  Similarity=0.105  Sum_probs=52.6

Q ss_pred             EEEEEEeCCCCcCC--c-ccccc-----cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRS--F-DHVPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL  219 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~--~-~~~~~-----~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~  219 (284)
                      +.+.+.||+|...+  . .+...     ..-..+.+++|.|.+......   .....+.+.  -.+-.+|.||.|.    
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~--~~~~gVIlTKlD~----  250 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA--SPIGSVIITKMDG----  250 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH--CSSEEEEEECGGG----
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc--cCCcEEEEecccc----
Confidence            45679999996441  1 11110     112568999999987653322   222333322  1234799999993    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       220 ~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                        . .  ....+.......+.|+.+++.  |++++
T Consensus       251 --~-a--~~G~als~~~~~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          251 --T-A--KGGGALSAVVATGATIKFIGT--GEKID  278 (433)
T ss_dssp             --C-S--CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred             --c-c--cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence              1 1  133455666677999888776  66653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.27  E-value=0.0012  Score=59.16  Aligned_cols=86  Identities=10%  Similarity=0.140  Sum_probs=55.3

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA  247 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa  247 (284)
                      ...++|.+++|....-.-+...+..++-.....  ..+||||.||+||   .+++ .....++.....+..|.+.+.+||
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL---~~~~-~~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDL---LDDE-GMDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGG---CCHH-HHHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccC---CCch-hHHHHHHHHHHHHhCCCcEEEEec
Confidence            468999999887654223445556666544332  5677999999997   2221 100012222333456889999999


Q ss_pred             CCCcCHHHHHHH
Q 023316          248 THNINVNKIFKF  259 (284)
Q Consensus       248 ~~~~~v~~lf~~  259 (284)
                      .++.|++++...
T Consensus       201 ~~~~gl~~L~~~  212 (358)
T 2rcn_A          201 HTQDGLKPLEEA  212 (358)
T ss_dssp             TTTBTHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            999999987654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.23  E-value=0.0003  Score=62.45  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=53.2

Q ss_pred             EEEEeCCCCcCCccc-ccc-----cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316          150 FSIWDVGGDSRSFDH-VPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  223 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~-~~~-----~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~  223 (284)
                      +.+.||+|....... ...     ..-..|-.+++.|.+...   ++......+.+.  ..+-+++.||.|.      . 
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~------~-  281 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDA------D-  281 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGG------C-
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCC------c-
Confidence            457899997653221 111     012468889999976543   333333333322  2344899999992      1 


Q ss_pred             ccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          224 QWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ..  ...+...+...+.++.+++  +|++++++
T Consensus       282 a~--~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          282 AR--GGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             SC--CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             cc--hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence            11  2334566777799988877  67777654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.89  E-value=0.0011  Score=61.28  Aligned_cols=64  Identities=17%  Similarity=0.304  Sum_probs=40.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC------------------CCC-C-c-c-cccceeeeeEEEEE---CCeEEEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN------------------EQE-R-S-L-QMAGLNLINKTLMV---QGARIAFSI  152 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~------------------~~~-~-~-~-~t~~~~~~~~~~~~---~~~~~~l~l  152 (284)
                      ....-|+|+|.+++|||+|+|.+++.                  .|. . . . .|.|+-.....+..   ++....+.+
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl  144 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence            34556889999999999999999863                  222 1 0 1 13343222111111   455678889


Q ss_pred             EeCCCCcCC
Q 023316          153 WDVGGDSRS  161 (284)
Q Consensus       153 ~Dt~G~e~~  161 (284)
                      .||.|...-
T Consensus       145 lDTeG~~~~  153 (447)
T 3q5d_A          145 MDTQGTFDS  153 (447)
T ss_dssp             EEEECCCSS
T ss_pred             EcCCccccc
Confidence            999997653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.75  E-value=0.0012  Score=63.42  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .|+|+|+.|+|||||++.+.|-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.55  E-value=0.00063  Score=55.34  Aligned_cols=84  Identities=12%  Similarity=-0.027  Sum_probs=52.6

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcc
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQ  224 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~  224 (284)
                      +.+.|+|+++..  .......+..+|.+|++...+...  ..+..+++.+.+...   ..+..+|.|+.|.      . .
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~------~-~  144 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE------M-A  144 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT------T-E
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC------C-c
Confidence            567899999876  344455667899999999875443  666666666665432   2233599999992      1 1


Q ss_pred             cchHHHHHHHHHHcCCcEE
Q 023316          225 WTIATQARAYAKAMKATLF  243 (284)
Q Consensus       225 ~~~~~~~~~~a~~~~~~~~  243 (284)
                      . ...+..++.+.++.+++
T Consensus       145 ~-~~~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          145 T-MLNVLKESIKDTGVKAF  162 (206)
T ss_dssp             E-EEHHHHHHHHHHTCCBC
T ss_pred             h-HHHHHHHHHHHcCCcee
Confidence            1 12344555555665554

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.50  E-value=0.0014  Score=52.71  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.49  E-value=0.0023  Score=52.62  Aligned_cols=63  Identities=6%  Similarity=-0.020  Sum_probs=43.9

Q ss_pred             EEEEEEeCCCC-cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          148 IAFSIWDVGGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       148 ~~l~l~Dt~G~-e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      +.+.+.|+++. ..  ......+..+|.+|++...+ ..+...+...++.+.+.. ..+..+|.|+.|
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~  131 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIP  131 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBC
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecC
Confidence            55779999887 43  23445677899999998764 556677777777776533 233459999999

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.16  E-value=0.0026  Score=50.89  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|+|++|+|||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5889999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.07  E-value=0.0031  Score=51.44  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|++|+|||||++.+.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999763

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.94  E-value=0.021  Score=52.42  Aligned_cols=62  Identities=16%  Similarity=0.099  Sum_probs=36.0

Q ss_pred             EEEEEEeCCCCcCCcc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCC
Q 023316          148 IAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDD  215 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~~~-----~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl  215 (284)
                      +.+.|.||+|...... +..     .....++.+++|.|.+....   .......+..   ..+ .-+|.||.|.
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~---~l~i~gvVlnK~D~  252 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE---ALPLTGVVLTKVDG  252 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH---HSCCCCEEEECTTS
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc---cCCCeEEEEecCCC
Confidence            4577999999765421 111     12347889999999875432   2222223322   122 2489999993

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.90  E-value=0.011  Score=54.30  Aligned_cols=62  Identities=18%  Similarity=0.305  Sum_probs=40.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh------------------cCCCC---Cccc-ccceeeeeEEEEE---CCeEEEEEEEe
Q 023316          100 SLKISLLGDCQIGKTSFVVKYV------------------GNEQE---RSLQ-MAGLNLINKTLMV---QGARIAFSIWD  154 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~------------------~~~~~---~~~~-t~~~~~~~~~~~~---~~~~~~l~l~D  154 (284)
                      ..=|+|+|..++|||+|+|.++                  ...|.   ...+ |.|+-.....+.+   +|..+.+.+.|
T Consensus        67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD  146 (457)
T 4ido_A           67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD  146 (457)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred             eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence            3446699999999999999553                  12343   1122 6666544333322   57788899999


Q ss_pred             CCCCcCC
Q 023316          155 VGGDSRS  161 (284)
Q Consensus       155 t~G~e~~  161 (284)
                      |.|....
T Consensus       147 TEG~~d~  153 (457)
T 4ido_A          147 TQGTFDS  153 (457)
T ss_dssp             ECCBTCT
T ss_pred             ccCCCCc
Confidence            9996543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.87  E-value=0.0062  Score=53.14  Aligned_cols=20  Identities=25%  Similarity=0.399  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      -++++|.+|+|||||+|.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.84  E-value=0.0044  Score=50.21  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|+|+|++|+|||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.84  E-value=0.0043  Score=49.70  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|+|+|.+|+|||||++.+.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.82  E-value=0.0045  Score=50.67  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++|+|++|+|||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.78  E-value=0.0044  Score=49.21  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      -++++|.+|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            37899999999999999755

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.74  E-value=0.0053  Score=50.25  Aligned_cols=23  Identities=13%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      --|+|+|++|+|||||++.+.+.
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999999864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.73  E-value=0.0051  Score=51.13  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++|+|+.|+|||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.67  E-value=0.0055  Score=50.72  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999998743

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.61  E-value=0.0064  Score=47.88  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999998765

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.61  E-value=0.0064  Score=49.76  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ...|.|+|.+|+|||||++.+.+-
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.50  E-value=0.0069  Score=54.21  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      .++|+|.+|||||||+|.+.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.49  E-value=0.0072  Score=49.54  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -|+|+|++|+|||||++.+.+..
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            48899999999999999998753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.47  E-value=0.0076  Score=48.83  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|+|++|||||||+++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.42  E-value=0.0076  Score=50.61  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998743

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.34  E-value=0.0089  Score=46.98  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|+|+|.+|+|||||.+.+.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.31  E-value=0.0084  Score=48.64  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|.+|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5889999999999999998763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.30  E-value=0.0084  Score=49.95  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37799999999999999987753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.28  E-value=0.0093  Score=47.76  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++|+|.+|+|||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.26  E-value=0.0093  Score=48.26  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ..|+|+|.+|+|||||++.+.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999997754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.25  E-value=0.0095  Score=48.50  Aligned_cols=23  Identities=17%  Similarity=0.379  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .-|+|+|.+|||||||++.+...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.24  E-value=0.0099  Score=50.11  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.19  E-value=0.01  Score=50.76  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.18  E-value=0.01  Score=48.12  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.|+|+|.+|+|||||++.+.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.18  E-value=0.01  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3779999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.18  E-value=0.011  Score=49.52  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 023316          101 LKISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~  121 (284)
                      ..|+|+|.+|+|||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.16  E-value=0.011  Score=46.33  Aligned_cols=21  Identities=24%  Similarity=0.048  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|.|.+|+||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.14  E-value=0.0091  Score=47.47  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.13  E-value=0.011  Score=46.06  Aligned_cols=19  Identities=26%  Similarity=0.251  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 023316          102 KISLLGDCQIGKTSFVVKY  120 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l  120 (284)
                      -|+|.|.+|+||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999999

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.12  E-value=0.012  Score=49.52  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999775

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.11  E-value=0.012  Score=46.46  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .-|++.|.+|+||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999976

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.10  E-value=0.011  Score=50.36  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.09  E-value=0.012  Score=49.55  Aligned_cols=23  Identities=17%  Similarity=0.095  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.08  E-value=0.011  Score=50.87  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37799999999999999998743

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.07  E-value=0.012  Score=49.73  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.06  E-value=0.01  Score=51.62  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      .++++|++|+|||||++.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987543

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.06  E-value=0.012  Score=48.08  Aligned_cols=22  Identities=23%  Similarity=0.304  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+|.|.+|+||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.05  E-value=0.01  Score=48.89  Aligned_cols=22  Identities=23%  Similarity=0.161  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999875

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.03  E-value=0.013  Score=48.92  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.01  E-value=0.012  Score=50.32  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            3779999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.00  E-value=0.012  Score=50.40  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37799999999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.99  E-value=0.012  Score=49.47  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.98  E-value=0.013  Score=47.93  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+|.|.+|+||||+...|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.97  E-value=0.013  Score=47.74  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ..|.|+|..|+|||||++.+.+-
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999998763

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.97  E-value=0.013  Score=49.73  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.95  E-value=0.014  Score=46.94  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|.|.+|+||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.94  E-value=0.013  Score=49.88  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.93  E-value=0.013  Score=49.54  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.91  E-value=0.012  Score=48.25  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.91  E-value=0.0047  Score=54.13  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|.+|||||||+|.+.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            78999999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.90  E-value=0.018  Score=45.38  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.|+|+|.+|+||||+++.+.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.90  E-value=0.014  Score=49.97  Aligned_cols=22  Identities=18%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999999885

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.88  E-value=0.015  Score=47.03  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.|+++|.+|+||||+...+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3699999999999999998863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.88  E-value=0.014  Score=47.21  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+|+|+|.+|+||||+.+.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.87  E-value=0.015  Score=50.18  Aligned_cols=23  Identities=30%  Similarity=0.239  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47799999999999999998753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.86  E-value=0.015  Score=49.59  Aligned_cols=22  Identities=18%  Similarity=0.222  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.86  E-value=0.014  Score=50.17  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999998753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.86  E-value=0.014  Score=47.24  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|+|.+|+||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.86  E-value=0.015  Score=46.51  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++++|.+|+|||||++++...
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            5789999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.81  E-value=0.015  Score=49.67  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998763

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.80  E-value=0.016  Score=47.62  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+++|+||+||+|...++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.80  E-value=0.015  Score=50.79  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .++|+|++|+|||||++.+.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999999875

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=94.79  E-value=0.05  Score=45.09  Aligned_cols=64  Identities=8%  Similarity=-0.002  Sum_probs=43.8

Q ss_pred             EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      .+.+.|+|+++.-..  .....+..+|.+|++.+.+ ..++..+..+.+.+.+... ....+|.|+.+
T Consensus       131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~~-~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLGI-KKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHTC-SCEEEEEEEEC
T ss_pred             CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcCC-ccEEEEEeCCC
Confidence            456789999875433  4455678899999999764 5666676666665554433 23358999998

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.78  E-value=0.015  Score=49.39  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.75  E-value=0.018  Score=45.84  Aligned_cols=21  Identities=19%  Similarity=0.134  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|.|.+|+||||+.+.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.74  E-value=0.016  Score=45.64  Aligned_cols=21  Identities=29%  Similarity=0.290  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|+|.|.+|+||||+.+.+..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.73  E-value=0.015  Score=49.66  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.71  E-value=0.011  Score=48.98  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCChHHHHHHHh-cC
Q 023316          102 KISLLGDCQIGKTSFVVKYV-GN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~-~~  123 (284)
                      -|+|+|+.|+|||||++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999998 54

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.71  E-value=0.016  Score=46.90  Aligned_cols=22  Identities=18%  Similarity=0.141  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      --|+|+|.+|+|||||.+.+.+
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998865

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.65  E-value=0.019  Score=47.27  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+|.|+|.+|+||||+.+.+.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.65  E-value=0.019  Score=49.13  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.61  E-value=0.015  Score=52.03  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .-+++|+|.+|+|||||++.+.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.61  E-value=0.022  Score=46.10  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+.|+|.|.+|+||||+.+.+..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.61  E-value=0.019  Score=45.23  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .+++.|++|+|||+|++.+...
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.60  E-value=0.015  Score=45.15  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -+.++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.57  E-value=0.018  Score=47.10  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+|.|.+|+||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.49  E-value=0.019  Score=50.34  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..-|.|+|.+|+|||||++.+.+
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHh
Confidence            45788999999999999999876

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.49  E-value=0.022  Score=45.28  Aligned_cols=22  Identities=14%  Similarity=0.067  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998854

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.47  E-value=0.024  Score=44.98  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|+++|.+|+||||+.+.+..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.42  E-value=0.025  Score=45.81  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +.|.|+|.+|+||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.40  E-value=0.023  Score=45.07  Aligned_cols=22  Identities=32%  Similarity=0.291  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+++|.+|+||||+...+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999853

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.38  E-value=0.02  Score=45.64  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|++.|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.38  E-value=0.011  Score=47.21  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|.|+|.+|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998763

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.37  E-value=0.021  Score=49.49  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999775

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.34  E-value=0.022  Score=47.84  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.33  E-value=0.021  Score=51.11  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999998754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=94.31  E-value=0.022  Score=48.89  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      ++++|++|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.25  E-value=0.023  Score=50.70  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++++|+.|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36799999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.23  E-value=0.029  Score=45.32  Aligned_cols=22  Identities=23%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.23  E-value=0.027  Score=43.88  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+|.|.+|+||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.19  E-value=0.024  Score=49.51  Aligned_cols=91  Identities=10%  Similarity=0.091  Sum_probs=49.9

Q ss_pred             EEEEeCCCCcCCcc------------cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCC
Q 023316          150 FSIWDVGGDSRSFD------------HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV  217 (284)
Q Consensus       150 l~l~Dt~G~e~~~~------------~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~  217 (284)
                      +.+.||+|......            +.+......+.++++.|.+.....   ...+..+.+.  ....+++.||.|.. 
T Consensus       187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~--~~~t~iivTh~d~~-  260 (304)
T 1rj9_A          187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEA--VGLTGVIVTKLDGT-  260 (304)
T ss_dssp             EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHH--HCCSEEEEECTTSS-
T ss_pred             EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHH--cCCcEEEEECCccc-
Confidence            45889999654221            111223457778889998765432   2223333221  13458999999831 


Q ss_pred             CCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       218 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                         .  .   ...+.......+.++.+++  +|++++++
T Consensus       261 ---a--~---gg~~l~i~~~~~~pi~~ig--~Ge~~~dl  289 (304)
T 1rj9_A          261 ---A--K---GGVLIPIVRTLKVPIKFVG--VGEGPDDL  289 (304)
T ss_dssp             ---C--C---CTTHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred             ---c--c---ccHHHHHHHHHCCCeEEEe--CCCChhhc
Confidence               1  1   1123455666788887765  35555443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.17  E-value=0.025  Score=44.66  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +|+|+|.+|+||||+...+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999988854

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.17  E-value=0.031  Score=44.47  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|+|.|.+|+||||+...+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999988754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.17  E-value=0.025  Score=50.64  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.17  E-value=0.025  Score=50.62  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            37899999999999999998754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.17  E-value=0.028  Score=46.19  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+.|+|+|.+|+||||+.+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998854

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.15  E-value=0.017  Score=50.54  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|+.|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5889999999999999998764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.14  E-value=0.026  Score=46.25  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++++|++|+|||||+..+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999743

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.11  E-value=0.026  Score=50.83  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.06  E-value=0.037  Score=44.82  Aligned_cols=23  Identities=22%  Similarity=0.065  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|+|.|.+|+||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.05  E-value=0.027  Score=50.65  Aligned_cols=23  Identities=35%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            37799999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.03  E-value=0.033  Score=46.77  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .++|+|.|.+|+||||+...|..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.02  E-value=0.028  Score=50.52  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37799999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.01  E-value=0.028  Score=50.33  Aligned_cols=22  Identities=18%  Similarity=0.227  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      +.|+|+.|+|||||++.+.+-.
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHhcCC
Confidence            6799999999999999998754

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.00  E-value=0.031  Score=46.20  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +.|+|.|.+|+||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.98  E-value=0.028  Score=49.01  Aligned_cols=89  Identities=18%  Similarity=0.131  Sum_probs=48.2

Q ss_pred             EEEEeCCCCcCCcc------------cccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          150 FSIWDVGGDSRSFD------------HVPIACKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       150 l~l~Dt~G~e~~~~------------~~~~~~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      ..+.|++|......            +........+-++++.|.+.. +....+    ..+.+.  ....+++.||.|- 
T Consensus       186 ~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~----~~~~~~--~g~t~iiiThlD~-  258 (302)
T 3b9q_A          186 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEV--VGITGLILTKLDG-  258 (302)
T ss_dssp             EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHH--TCCCEEEEECCSS-
T ss_pred             chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHH----HHHHHh--cCCCEEEEeCCCC-
Confidence            45789999765321            111123457777888886543 233222    222221  2345888999882 


Q ss_pred             CCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                           . .  .-......+...+.++..+..  |+.+++
T Consensus       259 -----~-~--~~g~~l~~~~~~~~pi~~i~~--Ge~~~d  287 (302)
T 3b9q_A          259 -----S-A--RGGCVVSVVEELGIPVKFIGV--GEAVED  287 (302)
T ss_dssp             -----C-S--CTHHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred             -----C-C--ccChheehHHHHCCCEEEEeC--CCChhh
Confidence                 1 1  133455666777877776543  444443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.97  E-value=0.029  Score=47.05  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|.|+|..|+|||||++.+.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999866

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.94  E-value=0.031  Score=46.16  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.91  E-value=0.035  Score=45.03  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ...|.|+|.+|+|||||++.+.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            357899999999999999998764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.85  E-value=0.035  Score=44.29  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ..|+|+|.+|+||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999988654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.84  E-value=0.034  Score=44.32  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|+++|.+|+||||+.+.+..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999998864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.83  E-value=0.034  Score=49.74  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHH
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKY  120 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l  120 (284)
                      ....||+|+|.+++|||||+.++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            34689999999999999999986

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.83  E-value=0.03  Score=50.01  Aligned_cols=22  Identities=14%  Similarity=0.220  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|+|+|+.|+|||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998763

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.82  E-value=0.033  Score=44.07  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|++.|.+|+||||+.+.+..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999998863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.80  E-value=0.035  Score=44.12  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|.++|.+|+|||||+.++..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=93.80  E-value=0.032  Score=47.62  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999998764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.78  E-value=0.038  Score=44.43  Aligned_cols=23  Identities=22%  Similarity=0.185  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.74  E-value=0.032  Score=48.19  Aligned_cols=22  Identities=27%  Similarity=0.155  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .-|+|.|.+|+|||||...+..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999964

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.73  E-value=0.025  Score=44.37  Aligned_cols=22  Identities=36%  Similarity=0.394  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|.|++|+|||+|+..+...
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999988653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=93.72  E-value=0.033  Score=49.11  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3889999999999999998764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.71  E-value=0.035  Score=46.97  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|+|+|.+|+|||||...+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999854

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.69  E-value=0.038  Score=43.93  Aligned_cols=21  Identities=29%  Similarity=0.159  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|++.|.+|+||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.67  E-value=0.03  Score=46.01  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.67  E-value=0.036  Score=45.46  Aligned_cols=22  Identities=18%  Similarity=0.093  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+|+|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998854

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.66  E-value=0.035  Score=45.03  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|.|+|.+|+|||||++.+.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.66  E-value=0.032  Score=48.04  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|+|.+|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=93.65  E-value=0.023  Score=50.59  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=93.60  E-value=0.037  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.+++.|++|+|||+|+..+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=93.59  E-value=0.038  Score=44.96  Aligned_cols=21  Identities=19%  Similarity=0.197  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=93.56  E-value=0.034  Score=49.05  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|..|+|||||++.+.+--
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.52  E-value=0.036  Score=50.16  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|+.|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=93.52  E-value=0.04  Score=45.58  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|+|++|+|||||+..+.+.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.52  E-value=0.059  Score=43.40  Aligned_cols=22  Identities=32%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|.|.+|+||||+.+.+..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988863

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.51  E-value=0.036  Score=48.32  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|.|+|..|+|||||++.+.+
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=93.48  E-value=0.016  Score=47.14  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|+|.|.+|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.48  E-value=0.046  Score=45.33  Aligned_cols=24  Identities=17%  Similarity=0.393  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ..-|+|.|..|+|||||++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            457899999999999999998764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.45  E-value=0.036  Score=49.51  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++|+|..|+|||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.44  E-value=0.042  Score=43.82  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|.|.+|+||||+.+.+..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.44  E-value=0.043  Score=43.91  Aligned_cols=22  Identities=27%  Similarity=0.228  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|.|.+|+||||+.+.+..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.43  E-value=0.038  Score=49.62  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|+|++|+|||||++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999976

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.40  E-value=0.043  Score=44.22  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      --+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.38  E-value=0.045  Score=42.76  Aligned_cols=21  Identities=19%  Similarity=0.184  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|.|.+|+||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.33  E-value=0.043  Score=46.10  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|++.|++|+|||+|++.+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            499999999999999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.32  E-value=0.043  Score=48.80  Aligned_cols=23  Identities=13%  Similarity=0.388  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ++.++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.32  E-value=0.048  Score=45.27  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|+|.+|+||||+.+.+..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.30  E-value=0.044  Score=46.45  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|++.|.+|+||||+.+.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=93.28  E-value=0.052  Score=43.53  Aligned_cols=24  Identities=17%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ...|+|.|.+|+||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            467999999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.27  E-value=0.044  Score=48.19  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+-|.|+|.+|+|||||++.+.+
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999988854

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.26  E-value=0.048  Score=45.18  Aligned_cols=22  Identities=36%  Similarity=0.321  Sum_probs=18.0

Q ss_pred             eE-EEEEcCCCCChHHHHHHHhc
Q 023316          101 LK-ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~K-I~llG~~~vGKSsLl~~l~~  122 (284)
                      .| |+|+|.||+||+|...++..
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35 45789999999999888864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=93.25  E-value=0.049  Score=43.07  Aligned_cols=22  Identities=23%  Similarity=0.205  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|++.|.+|+||||+.+.+.+
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.24  E-value=0.044  Score=48.99  Aligned_cols=90  Identities=18%  Similarity=0.149  Sum_probs=49.2

Q ss_pred             EEEEeCCCCcCCccc------------ccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316          150 FSIWDVGGDSRSFDH------------VPIACKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  216 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~------------~~~~~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~  216 (284)
                      ..+.|++|.......            ........+-++++.|.+.. +....+    ..+.+.  ....+++.||.|- 
T Consensus       243 ~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~----~~~~~~--~g~t~iiiThlD~-  315 (359)
T 2og2_A          243 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEV--VGITGLILTKLDG-  315 (359)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHH--TCCCEEEEESCTT-
T ss_pred             HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH----HHHHHh--cCCeEEEEecCcc-
Confidence            457899997654211            11123467777888886543 233222    222221  2345889999882 


Q ss_pred             CCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                           . .+  --.+...+...+.++.++..  |+.++++
T Consensus       316 -----~-~~--gG~~lsi~~~~~~pI~~ig~--Ge~~~Dl  345 (359)
T 2og2_A          316 -----S-AR--GGCVVSVVEELGIPVKFIGV--GEAVEDL  345 (359)
T ss_dssp             -----C-SC--THHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred             -----c-cc--ccHHHHHHHHhCCCEEEEeC--CCChHhc
Confidence                 1 11  23345566677888777644  4445443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.20  E-value=0.059  Score=46.62  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|.|.|.+|+|||||++.+.+
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988743

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.18  E-value=0.023  Score=50.66  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=93.16  E-value=0.048  Score=44.43  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++|.|++|+|||+|+..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=93.15  E-value=0.049  Score=43.81  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      +++.|++|+|||+|+..+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=93.14  E-value=0.046  Score=50.92  Aligned_cols=92  Identities=10%  Similarity=0.077  Sum_probs=50.5

Q ss_pred             EEEEEEeCCCCcCCcc-cc----------ccc-ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          148 IAFSIWDVGGDSRSFD-HV----------PIA-CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~~----------~~~-~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      +.+.+.||+|...... +.          +.+ ....+-++||.|.+... .++.    ...+.+.  -.+..+|.||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~--~~itgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEA--VGLTGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHH--TCCSEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhh--cCCCEEEEEcCC
Confidence            3466899999854321 10          001 12356788899976542 2222    2223221  134479999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      -      . .+  ...+..++...+.++.++.  +|++++++
T Consensus       450 ~------t-ak--gG~~lsi~~~~~~PI~fig--~Ge~vdDL  480 (503)
T 2yhs_A          450 G------T-AK--GGVIFSVADQFGIPIRYIG--VGERIEDL  480 (503)
T ss_dssp             G------C-SC--CTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             C------c-cc--ccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence            2      1 11  2235566667788887753  46666554

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.14  E-value=0.055  Score=42.90  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998854

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.12  E-value=0.049  Score=44.13  Aligned_cols=23  Identities=30%  Similarity=0.226  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.11  E-value=0.056  Score=45.57  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 023316          101 LKISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~  121 (284)
                      ..|+|+|..|+|||||++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999987

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.10  E-value=0.054  Score=45.63  Aligned_cols=23  Identities=26%  Similarity=0.206  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|+++|.+|+||||+...+..
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998854

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.09  E-value=0.057  Score=45.41  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+.|.|.|.+|+||||+.+.|..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988854

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.07  E-value=0.036  Score=43.74  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=15.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999853

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.07  E-value=0.05  Score=43.02  Aligned_cols=21  Identities=14%  Similarity=0.097  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999854

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=93.06  E-value=0.052  Score=43.01  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|.|.+|+||||+...|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988854

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.97  E-value=0.049  Score=49.71  Aligned_cols=22  Identities=18%  Similarity=0.176  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|+|+|+.|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999999764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.89  E-value=0.045  Score=50.63  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.88  E-value=0.045  Score=47.97  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++|+|..|+|||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            36799999999999999999763

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=92.83  E-value=0.058  Score=43.97  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .-|+++|.+|+||||+.+.+..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998854

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=92.76  E-value=0.11  Score=39.59  Aligned_cols=22  Identities=14%  Similarity=0.001  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|++.|++|+|||+++..+...
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999988654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.75  E-value=0.06  Score=44.78  Aligned_cols=23  Identities=26%  Similarity=0.218  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..-|++.|.+|+||||+++.+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=92.68  E-value=0.056  Score=50.64  Aligned_cols=23  Identities=17%  Similarity=0.151  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|..|+|||||++.+.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            49999999999999999997643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=92.62  E-value=0.061  Score=49.40  Aligned_cols=23  Identities=13%  Similarity=0.309  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ++.++|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.59  E-value=0.059  Score=46.02  Aligned_cols=21  Identities=14%  Similarity=0.200  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.53  E-value=0.063  Score=45.67  Aligned_cols=22  Identities=27%  Similarity=0.229  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .+++.|++|+|||+|++.+...
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4999999999999999998653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.52  E-value=0.061  Score=45.52  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|+|.+|+||||+.+.+.+
T Consensus        50 ~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           50 SMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=92.48  E-value=0.068  Score=44.70  Aligned_cols=21  Identities=29%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|++.|++|+|||+|++.+..
T Consensus        41 ~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999865

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=92.44  E-value=0.065  Score=45.94  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      --+++.|++|+|||+|++.+.+.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999998753

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.42  E-value=0.083  Score=43.14  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+.|+|.|.+|+||||+.+.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.40  E-value=0.073  Score=50.22  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998854

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=92.23  E-value=0.074  Score=43.94  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++++|++|+|||+|+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999888754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.22  E-value=0.089  Score=40.97  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|.|.+|+||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998853

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=92.17  E-value=0.07  Score=47.07  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|.|++|+|||+|++.+.+.
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.10  E-value=0.081  Score=45.46  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .-|++.|.+|+||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.10  E-value=0.076  Score=49.34  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=92.02  E-value=0.078  Score=46.18  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -+++.|++|+|||+|++.+.+
T Consensus        39 ~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.01  E-value=0.077  Score=50.47  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5889999999999999999774

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=91.94  E-value=0.24  Score=44.96  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .-|+++|.+|+||||+.+++..
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999865

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=91.92  E-value=0.082  Score=47.55  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++++|++|+|||||++.+.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            688999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=91.91  E-value=0.08  Score=49.92  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=91.89  E-value=0.081  Score=45.67  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .-+++.|++|+|||+|+..+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3577789999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=91.87  E-value=0.084  Score=45.67  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|++.|++|+|||+|++.+.+.
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            5899999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=91.81  E-value=0.088  Score=50.07  Aligned_cols=23  Identities=17%  Similarity=0.315  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      +++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.79  E-value=0.1  Score=40.23  Aligned_cols=19  Identities=21%  Similarity=0.329  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 023316          103 ISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~  121 (284)
                      .+++|+.|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5799999999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=91.77  E-value=0.084  Score=45.79  Aligned_cols=90  Identities=12%  Similarity=0.053  Sum_probs=50.3

Q ss_pred             EEEEEEeCCCCcCCcc--ccc--cccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFD--HVP--IACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  221 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~--~~~--~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~  221 (284)
                      ..+.|.||+|......  +..  ..+.  ..+.+++|.|.+..  .+++..+.+.+.   .-...-+|.||.|..     
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~~giVltk~D~~-----  252 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPVNQYIFTKIDET-----  252 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCCCEEEEECTTTC-----
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCCCEEEEeCCCcc-----
Confidence            4577999999875432  111  1222  36788889987643  344444443332   112224777999931     


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316          222 DLQWTIATQARAYAKAMKATLFFSSATHNINV  253 (284)
Q Consensus       222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v  253 (284)
                        ..  ...+...+...++++..++  +|+++
T Consensus       253 --~~--~g~~~~~~~~~~~pi~~i~--~ge~v  278 (296)
T 2px0_A          253 --TS--LGSVFNILAESKIGVGFMT--NGQNV  278 (296)
T ss_dssp             --SC--CHHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred             --cc--hhHHHHHHHHHCcCEEEEE--CCCCC
Confidence              11  2345667777888876654  34554

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=91.74  E-value=0.1  Score=43.68  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 023316          100 SLKISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~  121 (284)
                      .+.|++.|.+|+||||+.+.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999886

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=91.70  E-value=0.088  Score=45.30  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..+++.|++|+|||+|+..+..
T Consensus        68 ~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999986643

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=91.69  E-value=0.11  Score=42.48  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ..|+++|++|+|||+|...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.65  E-value=0.094  Score=45.61  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|.|.+|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            4889999999999999998754

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=91.61  E-value=0.073  Score=43.73  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888865

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=91.60  E-value=0.097  Score=44.83  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+++.|++|+|||+|++.+..
T Consensus        52 ~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           52 NILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=91.59  E-value=0.095  Score=46.43  Aligned_cols=22  Identities=32%  Similarity=0.285  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|.|++|+|||+|++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=91.51  E-value=0.12  Score=46.94  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHH
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKY  120 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l  120 (284)
                      ....+|++|+|.+.+||||++.++
T Consensus        37 ~~~~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           37 YRATHRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             CTTEEEEEEEESTTSSHHHHHHHH
T ss_pred             hhccceEEEecCCCCchhhHHHHH
Confidence            355799999999999999999987

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.49  E-value=0.097  Score=50.10  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58899999999999999998754

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=91.37  E-value=0.096  Score=45.62  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|.|.+|+|||+|++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999998753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.35  E-value=0.092  Score=50.13  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|+.|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6889999999999999998764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=91.34  E-value=0.11  Score=44.07  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ...+++.|++|+|||+|+..+...
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            457899999999999999998653

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=91.26  E-value=0.13  Score=42.75  Aligned_cols=21  Identities=29%  Similarity=0.270  Sum_probs=18.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHH
Q 023316          100 SLKISLLGDCQIGKTSFVVKY  120 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l  120 (284)
                      .+||++.|.+||||||++..+
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~l   26 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQA   26 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHH
Confidence            589999999999999997665

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.22  E-value=0.11  Score=45.24  Aligned_cols=93  Identities=16%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             EEEEEEeCCCCcCCcc-c-------ccc----cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          148 IAFSIWDVGGDSRSFD-H-------VPI----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~-------~~~----~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      ..+.+.||+|...... +       ...    .-..++.+++|.|.+..  .+.+.. ...+.+.  ..+.-+|.||.|-
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~i~gvVlTk~D~  261 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VNVTGIILTKLDG  261 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SCCCEEEEECGGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CCCCEEEEeCCCC
Confidence            3467999999643221 1       000    11347888999998633  222221 2233222  2233588899993


Q ss_pred             CCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                            . ..  -..+...+...+.|+.+++.  |++++++
T Consensus       262 ------~-~~--gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl  291 (306)
T 1vma_A          262 ------T-AK--GGITLAIARELGIPIKFIGV--GEKAEDL  291 (306)
T ss_dssp             ------C-SC--TTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred             ------c-cc--hHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence                  1 11  23366777888999888755  5555554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.22  E-value=0.09  Score=46.18  Aligned_cols=20  Identities=20%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      +++.|++|+|||||++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=91.20  E-value=0.13  Score=42.74  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ....|.|+|.+|+||||+.+.+.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=91.13  E-value=0.13  Score=44.20  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 023316          100 SLKISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~  121 (284)
                      .+.|+|.|.+|+||||+.+.|.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999886

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.10  E-value=0.12  Score=49.54  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .+.|+|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58899999999999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=91.09  E-value=0.068  Score=40.78  Aligned_cols=21  Identities=10%  Similarity=0.066  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|++.|++|+|||+++..+..
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCC
T ss_pred             cEEEECCCCccHHHHHHHHHH
Confidence            499999999999999887754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.05  E-value=0.12  Score=48.60  Aligned_cols=23  Identities=43%  Similarity=0.632  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .+.|+|..|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=91.04  E-value=0.12  Score=44.48  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -+++.|++|+|||+|+..+...
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            5899999999999999988653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.00  E-value=0.11  Score=45.50  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=90.93  E-value=0.12  Score=48.81  Aligned_cols=23  Identities=43%  Similarity=0.598  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=90.86  E-value=0.17  Score=40.93  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcC
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ..+.|.|.|..|+||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4688999999999999999988653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=90.85  E-value=0.12  Score=45.21  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      --|++.|++|+|||+|+..+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            35899999999999999998753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=90.81  E-value=0.12  Score=45.95  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -+.|+|++|+|||||++.+.+.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4779999999999999999875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=90.79  E-value=0.11  Score=45.87  Aligned_cols=22  Identities=23%  Similarity=0.182  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.78  E-value=0.13  Score=45.05  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++.|++|+|||+|++.+.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=90.70  E-value=0.084  Score=50.18  Aligned_cols=22  Identities=14%  Similarity=0.203  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++++|+.|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999887764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=90.55  E-value=0.15  Score=48.87  Aligned_cols=23  Identities=43%  Similarity=0.632  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998854

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=90.55  E-value=0.13  Score=44.80  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.|++.|++|+|||+|+..+..
T Consensus        52 ~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999999865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=90.52  E-value=0.1  Score=49.67  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=90.48  E-value=0.14  Score=45.63  Aligned_cols=19  Identities=21%  Similarity=0.200  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 023316          103 ISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~  121 (284)
                      .+|+|+.|+|||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5589999999999999976

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.42  E-value=0.14  Score=46.75  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|++.|+||+|||+|+..+.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999865

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=90.40  E-value=0.07  Score=45.01  Aligned_cols=20  Identities=30%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      +++.|++|+|||+|++.+..
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999865

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=90.38  E-value=0.15  Score=44.45  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.+++.|++|+|||+|+..+..
T Consensus       153 ~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=90.32  E-value=0.14  Score=45.25  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      --+++.|++|+|||+|+..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=90.30  E-value=0.12  Score=43.70  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|+|.|..|+||||+++.+..
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.30  E-value=0.16  Score=40.76  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|.|.|.+|+||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998854

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.25  E-value=0.15  Score=46.68  Aligned_cols=22  Identities=18%  Similarity=0.122  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.|++.|+||+|||+|+..+.+
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHH
Confidence            3699999999999999999865

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=90.18  E-value=0.16  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .++++|++|+|||+|+..+...
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=90.18  E-value=0.16  Score=44.65  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..|+|+|.+|+|||||...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=90.11  E-value=0.15  Score=45.17  Aligned_cols=21  Identities=24%  Similarity=0.102  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           47 SNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=90.04  E-value=0.16  Score=44.31  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|++.|++|+|||+|++.+...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4899999999999999998543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=89.97  E-value=0.25  Score=41.45  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -|++.|++|+|||+|++.+...-
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CEEEECCCCCcHHHHHHHHHHhc
Confidence            58999999999999999987643

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.92  E-value=0.17  Score=46.44  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      --|++.|+||+|||+|+..+.+
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3699999999999999999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=89.91  E-value=0.17  Score=48.49  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      +.|+|..|+|||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999988543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=89.86  E-value=0.19  Score=41.85  Aligned_cols=24  Identities=21%  Similarity=0.178  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..+++.|+|.+|+||||+...+..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            367999999999999999988854

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=89.79  E-value=0.21  Score=44.51  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+|+++|.+|+||||+...+.+
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            5799999999999999987643

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=89.71  E-value=0.21  Score=39.84  Aligned_cols=23  Identities=17%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .=|++.|++|+|||||...|...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            35899999999999999999764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=89.71  E-value=0.17  Score=44.84  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|+|.|++|+|||+|++.+...
T Consensus        86 ~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=89.70  E-value=0.17  Score=46.39  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -+++.|++|+|||+|++.+.+
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=89.65  E-value=0.2  Score=44.30  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|+|+|+.|+|||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998653

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=89.56  E-value=0.18  Score=44.82  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+++.|++|+|||+|+..+..
T Consensus        74 ~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           74 NILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=89.53  E-value=0.17  Score=47.66  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++++|++|+|||||++.+.+
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998865

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=89.52  E-value=0.18  Score=45.73  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      -+.|+|++|+|||||+..++
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            48899999999999999875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=89.46  E-value=0.19  Score=44.60  Aligned_cols=22  Identities=27%  Similarity=0.140  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      --|+|.|++|+|||+|++.+..
T Consensus       118 ~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=89.46  E-value=0.16  Score=46.88  Aligned_cols=22  Identities=36%  Similarity=0.674  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|++|+|||||++.+..+
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccHHHHHHHhh
Confidence            7999999999999999988654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=89.43  E-value=0.21  Score=41.19  Aligned_cols=20  Identities=30%  Similarity=0.652  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      =+++.|+||+|||+|+..++
T Consensus        32 l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999998875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.42  E-value=0.21  Score=43.76  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|+|+|++|||||+|...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	284
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-22
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-20
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-20
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-19
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-19
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-18
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-18
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-17
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-17
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-17
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-15
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-15
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-15
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-15
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	9e-15
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-14
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-14
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	7e-14
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-13
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-13
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-13
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-13
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	4e-13
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-13
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	7e-13
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-13
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	8e-13
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	9e-13
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-12
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-12
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-12
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-11
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-11
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-11
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	6e-11
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	9e-11
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-10
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-10
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-10
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-10
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-10
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-10
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-09
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-08
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-08
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-07
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-06
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-06
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	7e-05
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-04
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-04
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	6e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.001

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.3 bits (218), Expect = 4e-22
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 5/165 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  + ++  +      +   G++   +T+ + G RI   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R         + A+ I+ ++D+T+  + ++I  W     +     +  +I     D    
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV--- 123

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             D +     +    A         +SA  NINV   F  +   +
Sbjct: 124 -NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.5 bits (203), Expect = 6e-20
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI L+GD  +GK+  +V++V ++     +   G++   KT+ + G ++   IWD  G  
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 218
           R         + A+ I+ ++D+T   T  +I  W+    +       + L+G K D   R
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                    A Q  A AK +      SSA ++ NVN+IF  +   +
Sbjct: 123 ------VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 8e-20
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 5/166 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R         + A   L ++D+T R T N +  W ++AR        I++     D    
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL--- 121

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
               +     +A+ +A+        +SA    NV   F     K++
Sbjct: 122 -EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 1e-19
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           V+ K+ L+GD  +GKT  +V++          +   G++  NK L V G ++   +WD  
Sbjct: 5   VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 64

Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  R         +DA A+L ++D+T++ + ++I  W +E  ++ Q  + +++     D 
Sbjct: 65  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD- 123

Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                  +          AK        +SA   +NV+  F  I  +L
Sbjct: 124 ---SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 1e-19
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+G+  +GKT  V ++             G++ + KT+ + G ++   IWD  G  
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 218
           R         + A A++  +D+T   +   +  W  E  ++    +  +L+G K D   R
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
                +     +A  +++A       +SA  + NV K+F  +  +L +
Sbjct: 126 -----REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 2e-18
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 7/169 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 218
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
                +     +ARA+A+    +   +SA  + NV + FK I+ +++ +
Sbjct: 125 -----RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 3e-18
 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 9/177 (5%)

Query: 95  DSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           +  L +LKI ++G+  +GK+S ++++  +          G++   KT+ V G +   +IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGT 211
           D  G  R     P   + A  ++ ++D+T R T   +  W +E   +      + +L+G 
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
           K D   R     +         +A+        +SA     V   F+ ++ K+   P
Sbjct: 122 KIDKENREVDRNEG------LKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 172

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (189), Expect = 1e-17
 Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GK+  ++++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R         + +  I+ ++D+T + + N +  W  E  ++  + +  L+     D    
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL--- 123

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
             D +      A+ +A A K     +SA  + NV   F  +  ++  
Sbjct: 124 -KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.5 bits (182), Expect = 6e-17
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++G+  +GKTSF+ +Y  +      +   G++   KT+     RI   IWD  G  
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 218
           R         + A+  + M+D+T+  + N++  W ++ + ++     + L+G K D    
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 121

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              D +   + + R  A  +    F +SA  NINV + F+ ++  +
Sbjct: 122 -MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 6e-17
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R         + A   L ++D+TSR T N++  W ++AR      I I++     D    
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL--- 122

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
               +     +A  +A+  +     +SA    NV + F     K+ N
Sbjct: 123 -DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 1e-15
 Identities = 28/165 (16%), Positives = 65/165 (39%), Gaps = 7/165 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ +LG   +GK++  V++V             +   K + V  +     I D  G  + 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKFDDFVRL 219
                +  K+    + ++ L ++ +   I     +  +  +   +P+ L+G K D     
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE- 123

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
               +   +++ RA A+        +SA     V+++F  I+ ++
Sbjct: 124 ----REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 3e-15
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 5/166 (3%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +   G + + K L + G R+  +IWD  G 
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + I     D   
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-- 120

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                +     +A +YA+++ A  + +SA  N  + ++F  +  ++
Sbjct: 121 --EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 4e-15
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 5/167 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  ++++     Q       G+    + + + G +I   IWD  G  
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
                     + A   L ++D+T R T N +  W  +AR+ + + + I++     D    
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL--- 120

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
               +     +  A+A+        +SA    NV + F     +++ 
Sbjct: 121 -ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (168), Expect = 5e-15
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 2/166 (1%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S+K+ LLG+  +GK+S V+++V N+  E      G   + + + +    + F IWD  G 
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218
            R     P+  ++A A L ++D+T   +      W  E  +     I I +     D ++
Sbjct: 63  ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 122

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              + +     +    A+      F +SA    NVN +F  I  K+
Sbjct: 123 EGGERKVARE-EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.0 bits (167), Expect = 9e-15
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 13/188 (6%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK+ +LGD  +GKTS + +YV  +   +     G + + K +MV    +   IWD  G  
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY----SEARKWNQTAIP-ILIGTKFD 214
           R         + A   + +FD+T+  T  ++  W      +A   +    P +++G K D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFNLPWTVKR 273
                    +     +A+A+  +     +F +SA   INV + F+ I          V+ 
Sbjct: 123 LEN------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176

Query: 274 NLTIGEPI 281
                EPI
Sbjct: 177 YNEFPEPI 184

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 1e-14
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 5/168 (2%)

Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V  +  E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I +     D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                + +     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ----ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 3e-14
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 7/165 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   I   +WD  G  R
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRL 219
               +P   +D+ A + ++D+T+  +      W  + R    + + I L+G K D     
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL---- 117

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             D +     +    AK +      +SA    NV ++F+ + A L
Sbjct: 118 -ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 7e-14
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 9/178 (5%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N+          +    T+M+ G      ++D  G  
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDF-- 216
                 P++       L  F + S  +  ++   +      +    P  L+GT+ D    
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 217 -----VRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFNLP 268
                       +      A   A+ +KA  +   SA     +  +F   +      P
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 2e-13
 Identities = 28/167 (16%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           + K+ ++G   +GK++  ++++ +           +   K   V G      I D  G  
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 65

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFV 217
                     +     L +F +  R + N +   +++  +         +L+G K D   
Sbjct: 66  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD--- 122

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
            L    Q    ++A A+  +     F +SA   +NV++ F+ ++  +
Sbjct: 123 -LESQRQVPR-SEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 2e-13
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV----------QGARIA 149
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++           +  ++ 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-- 207
             +WD  G  R         +DA+  L MFDLTS+ +  ++  W S+ +       P   
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           LIG K D   +     +     QAR  A       F +SA    NV K  + ++  +
Sbjct: 126 LIGNKADLPDQ-----REVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 2e-13
 Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 4/164 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           ++I ++G    GKT+ + K    E   +       +      V+   I+F++WDVGG  +
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220
                    ++   ++F+ D   R  +N            ++    +L+       +   
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
            +             +     +  + AT    + +   ++  +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 3e-13
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 7/165 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           ++ ++G   +GK++  ++++ +           +   K  ++        I D  G    
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRL 219
                   +     L +F +T R +   I  +  +  +         ILIG K D     
Sbjct: 67  GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL---- 122

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
               +     + +  A+ +K T   +SA   +NV++ F  ++  +
Sbjct: 123 -DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 4e-13
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           + LK  ++GD  +GKT  ++ Y  +           +    ++ V G +    ++D  G 
Sbjct: 8   LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 67

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFD--- 214
                  P++       L  F + +  +  ++   +    K     +P +LIGT+ D   
Sbjct: 68  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 127

Query: 215 ---DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFN 266
                 RL    +  I   Q +  AK + A  +   SA     +  +F   +  +  
Sbjct: 128 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 7e-13
 Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V++K+ ++G+  +GK+S + +Y      +   +  G++ + + + V    +   +WD  G
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
                       + A A + +F  T R +  +I  W  +           L+  K D   
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID--- 117

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
               D       +A   AK +K   + +S   ++NV+++FK++  K 
Sbjct: 118 --LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 7e-13
 Identities = 20/164 (12%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ ++G   +GK++  ++ + N           +   K +++ G      I D  G    
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRLP 220
                   +     L +F + +  +   I  +  + ++  +   +P+++     D     
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124

Query: 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
            + +       +  A++       +SA     V   F  ++ ++
Sbjct: 125 VESRQA-----QDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 8e-13
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 4/164 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           ++I +LG    GKT+ + K    +   ++   G N+      V    + F++WDVGG  +
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 68

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220
                         ++F+ D   R  ++             +    I++       +   
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 128

Query: 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
                          +     +  S AT    + +   ++ +  
Sbjct: 129 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (152), Expect = 8e-13
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 5/165 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK+ LLGD  +GK+S + ++V +          G + + KT+  Q     F IWD  G  
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           R     P+  + + A + ++D+T   T +++  W  E R+    +I + I     D    
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL--- 121

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             D++  +   A+ YA ++ A    +SA + IN+N++F  I  ++
Sbjct: 122 -TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 9e-13
 Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPIL-IGTKFDDF-- 216
                 P++       L  F L S  +  ++   +    + +    PI+ +GTK D    
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 217 -----VRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFNLP 268
                      L      Q  A AK + A  +   SA     +  +F   +  +   P
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 2e-12
 Identities = 23/170 (13%), Positives = 60/170 (35%), Gaps = 6/170 (3%)

Query: 97  DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +L + K+ ++GD  +GK++  +++              +   K   +        + D  
Sbjct: 1   NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTA 60

Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS-EARKWNQTAIPILIGTKFDD 215
           G            +     L ++ +T + +   +  ++    R  ++ + P+++     D
Sbjct: 61  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 120

Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNINVNKIFKFIMAKL 264
                  L+     Q +  A         +SA    +NV+K F  ++  +
Sbjct: 121 ----LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 11/170 (6%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +   IWD  G  
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIPILIGTKFDD 215
           R         + +   L  F +    +  ++  W  E    A      + P +I     D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 264
                   +     +A+A+ +      +F +SA    NV   F+  + ++
Sbjct: 127 ISE-----RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 60.7 bits (146), Expect = 5e-12
 Identities = 28/165 (16%), Positives = 65/165 (39%), Gaps = 7/165 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ ++G   +GK++  ++++ +E     +    +   K +++ G  +   I D  G    
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR--KWNQTAIPILIGTKFDDFVRL 219
                   +     L +F +T   +  +   +  +    K ++    +L+G K D     
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD----- 120

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             D +     +A+  A         +SA    NV+K+F  +M ++
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 1e-11
 Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 10/178 (5%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 60

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
               +  P++  D+ A+L  FD++   TL+S++  +    +       + L+G K D   
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 218 RLPPDLQWT-------IATQARAYAKAMKATLFF-SSATHNIN-VNKIFKFIMAKLFN 266
            +   ++ +          Q    AK + A  +   SA  + N V  IF        N
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 4/164 (2%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ +LG   +GK++  V++V             +   K + V   +    I D  G  + 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS-EARKWNQTAIPILIGTKFDDFVRLP 220
                +  K+      ++ +T++ T N +        R  +   +P+++     D     
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124

Query: 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
              +      AR +          SSA   INVN+IF  ++ ++
Sbjct: 125 VVGKEQGQNLARQW---CNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 8/166 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           L+I +LG    GKT+ + +    E   +    G N+      +    +  ++WD+GG + 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 73

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA--IPILIGTKFDDFVR 218
              +      D  A++F+ D T +  +++         +  +      ++   K D    
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           L                K    ++  SSA     + +   +++  +
Sbjct: 134 LSASEVSK--ELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 6e-11
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 4/164 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
            K+ ++G    GKT+ + ++  NE   +    G N+    +        F +WD+GG   
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 71

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220
                     +   ++ + D T R  ++       +           L+       V+  
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131

Query: 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +            K  +  +    A     + +  +++M++L
Sbjct: 132 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 9e-11
 Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 8/162 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           ++++ G   +GK+S V+++V      S      +   + +    +     I D  G  + 
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP---ILIGTKFDDFVR 218
                ++     A + ++ +TSR +L  +   Y +  +          +L+G K D+   
Sbjct: 64  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 123

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
                +   +++A A A+  K     +SA  N NV ++F+ +
Sbjct: 124 -----REVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 160

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 55.7 bits (133), Expect = 3e-10
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 11/186 (5%)

Query: 80  GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINK 139
           GL+ + R   S  D +     ++I LLG    GKT+ + +    +        G      
Sbjct: 1   GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FN 51

Query: 140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
              VQ      ++WD+GG  +   +     ++   ++++ D   R          +E  +
Sbjct: 52  IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLE 111

Query: 200 WNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
             + + +P+LI     D +                  +     +   SA     V     
Sbjct: 112 EEKLSCVPVLIFANKQDLLT-AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170

Query: 259 FIMAKL 264
           ++   +
Sbjct: 171 WVCKNV 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 4e-10
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           S KI++LG   +GK+S  +++V  +   S      N   K + V G      + D  G  
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 160 RSFDHVPIACKDAVAILFMFDLT--SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
                      D    + ++ +T      +  ++               +L+G K D   
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD--- 120

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
                 +     + +A A++  A    SSA  N     +F+ I+ +
Sbjct: 121 --LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 5e-10
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           +  K+ ++GD   GKT  ++    ++                + V G ++  ++WD  G 
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL 60

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA-RKWNQTAIPILIGTKFDDF- 216
                  P++  D   IL  F + S  +L +I   ++   + +      IL+G K D   
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 217 ------VRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFI 260
                        +     + R  A  + A  +   SA     V ++F+  
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 6e-10
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 8/171 (4%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  K+ L+GD   GKT+FV +++  E +++ +   G+ +           I F++WD  G
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD--- 118

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
                    +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 119 ----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.1 bits (131), Expect = 6e-10
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 10/172 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           LK+ +LGD  +GKTS + +YV ++  Q+    +    L  +  +         +WD  G 
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-----NQTAIPILIGTKF 213
            R         + A   + ++D+T+  +  +I  W  E          +T   +++G K 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
           D         + +    A++        LF +SA + INV+  F+ I     
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIP---LFLTSAKNAINVDTAFEEIARSAL 171

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 9e-10
 Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 4/166 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           ++I +LG    GKT+ + +    E   ++   G         V    + F +WD+GG + 
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLTS 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220
              +      +  A++++ D   R  +           +  +    IL+       +   
Sbjct: 62  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121

Query: 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
                   +      K  K  +F +SAT    +++  ++++  L +
Sbjct: 122 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 10/166 (6%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++GD  +GKT    ++      +R+    G++   + + + G RI   +WD  G  
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 160 RSFD-HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFV 217
           R     V    ++  A++F++D+T+  + +S+  W  E ++      IP ++     D  
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD-- 120

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSA---THNINVNKIFKFI 260
                        A+ +A      LF +SA     N +V  IF  +
Sbjct: 121 --LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 30/168 (17%), Positives = 67/168 (39%), Gaps = 6/168 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           L++ +LGD + GK+S + +++    +   +        K ++V G      I +      
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEA--GA 62

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220
                       + +  + D  S   ++ + G  S  R   +  + + +    D      
Sbjct: 63  PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 122

Query: 221 PDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFNL 267
           P +      +ARA    MK   ++ + AT+ +NV+++F+ +  K+  L
Sbjct: 123 PRVVGD--ARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 168

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 7/163 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           ++++L+G    GKT+FV      +    +      +      +    +   +WD+GG  R
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIP---TVGFNMRKITKGNVTIKLWDIGGQPR 59

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE--ARKWNQTAIPILIGTKFDDFVR 218
                   C+   AI++M D   +  + +          +   Q    +++G K D    
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
           L             +  +  +   +  S     N++   ++++
Sbjct: 120 LDEKELIEK--MNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 23/166 (13%), Positives = 54/166 (32%), Gaps = 8/166 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           L++ +LG    GKT+ + K+ G + +         L      ++      +IWDVGG   
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLEHRGFKLNIWDVGGQKS 58

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA--IPILIGTKFDDFVR 218
              +     +    ++++ D   R  +              + A    ++   K D    
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           L  +            +   +  +   SA    ++     +++  +
Sbjct: 119 LSCNAIQEALELDSIRSHHWR--IQGCSAVTGEDLLPGIDWLLDDI 162

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 20/166 (12%), Positives = 44/166 (26%), Gaps = 11/166 (6%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+  LG    GKT+ +     +                +  +    I F+ +D+GG  ++
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQA 57

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV---- 217
                    +   I+F+ D       +             +      +            
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 218 ---RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
               L   L     T ++         +F  S        + F+++
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 16/177 (9%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           + K+  LG    GKT+ +     +   + +          +  +  A + F+ +D+GG  
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHI 68

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE--ARKWNQTAIPILIGTKFDDFV 217
           ++             I+F+ D      L             +       +++G K D   
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 218 RLPPD----------LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
            +  +                + +     A    +F  S        + F+++   +
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG-GD 158
           ++ L+G+  +GK++    + G     +   ++ G +   +TLMV G      + D+    
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFV 217
             +        +   A L ++ +T R +         + R+  QT  IPI++     D V
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124

Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
           R           + RA A         +SA    NV ++F+ I+ ++
Sbjct: 125 RCREVSVS----EGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 23/167 (13%), Positives = 58/167 (34%), Gaps = 9/167 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K+++ G   +GK++ VV+++             +       +    ++  I D      
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDT-AGQE 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVR 218
                    +     + ++D+T R +   ++   +   +    +    IL+G K D    
Sbjct: 62  DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD---- 117

Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSA-THNINVNKIFKFIMAKL 264
                +     +    A  +    +  SA T   N+ +IF  +  ++
Sbjct: 118 -LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 4/163 (2%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ LLG   +GK++    + G E     + AG +  +++++V G   +  ++D+      
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221
                       A + ++ +T + +         + R+  QT    +I            
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII---LVGNKSDLV 118

Query: 222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
             +     + RA A         +SA  + NV  +F+ ++ ++
Sbjct: 119 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (92), Expect = 7e-05
 Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 20/172 (11%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K+ + G    GK+S +    G E      +AG         +    +   I D  G   
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 161 SFDH--------VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTK 212
           + D              + A  +LFM D T+   ++    W     +        ++  K
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 213 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
            D            I  +    ++     L   SA     V+ +   +   +
Sbjct: 122 AD------------ITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +KI LLG  + GK++F+ +      +   +  G++  +     +   + F + DVGG   
Sbjct: 3   VKILLLGAGESGKSTFLKQMRIIHGQDPTK--GIHEYD----FEIKNVPFKMVDVGGQRS 56

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
                        +ILF+   +    +       +   +       I+    F +   +
Sbjct: 57  ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 7/179 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           LK+ LLG  + GK++F+ +         +   G+             + F + DVGG   
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGII----EYPFDLQSVIFRMVDVGGQRS 57

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220
                    ++  +I+F+  L+    +       +   +       I+    F +   + 
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGE 279
                           +     F        +     +FI+    +L     + +    
Sbjct: 118 --FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF 174

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 19/180 (10%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           + ++ LLG  + GK++ V +        +    G+         Q  ++ F ++DVGG  
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHVVLTS---GIFETK----FQVDKVNFHMFDVGGQR 58

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE------------ARKWNQTAIPI 207
                      D  AI+F+   +S   +       +               +W +T   I
Sbjct: 59  DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118

Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
           L   K D         +  I      +A+             +  V +   FI  +   +
Sbjct: 119 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI 178

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 18/170 (10%), Positives = 47/170 (27%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           S  ++++G   +GK++ +   +G +                 ++   R      D  G  
Sbjct: 5   SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
           +  D +       V             ++       E     +   P++           
Sbjct: 65  KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNK 124

Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPW 269
               ++        +    +A     SA     V ++   ++A +   P+
Sbjct: 125 LDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPF 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.9
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.85
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.83
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.82
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.81
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.81
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.8
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.8
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.77
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.71
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.69
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.69
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.68
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.65
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.61
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.61
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.56
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.5
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.5
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.32
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.3
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.26
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.25
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.24
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.22
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.08
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.07
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.05
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.88
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.76
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.75
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.74
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.7
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.7
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.47
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.27
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.7
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.62
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.6
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.41
d1okkd2	207	GTPase domain of the signal recognition particle r	97.38
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.37
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.34
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.34
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.3
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.21
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.15
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.11
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.83
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.57
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.52
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.5
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.49
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.36
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.31
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.28
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.27
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.25
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.2
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.12
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.1
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.09
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.08
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.04
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.01
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.97
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.96
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.79
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.75
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.69
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.66
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.61
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.5
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.49
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.49
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.44
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.4
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.38
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.33
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.31
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.31
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.29
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.28
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.27
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.25
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.23
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.23
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.21
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.19
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.18
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.17
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.13
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.12
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.05
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.03
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.01
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.0
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.92
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.88
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.88
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.81
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.75
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.73
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.62
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.62
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.6
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.6
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.57
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.56
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.43
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.37
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.19
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.05
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.92
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.92
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	93.91
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.9
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.89
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.88
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.86
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.76
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.41
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.31
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.2
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.9
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.87
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	92.87
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.72
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	92.68
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.62
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.6
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.59
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.53
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.52
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.48
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.27
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.13
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.77
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.73
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.68
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.56
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	91.54
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.53
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.27
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.21
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.02
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	90.78
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.72
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.4
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.22
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	90.06
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.93
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.67
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	89.63
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	89.49
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	89.45
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.42
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.35
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.12
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	88.94
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.92
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.49
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	88.34
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	88.15
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	87.58
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	87.48
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	87.48
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.43
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.26
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.21
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	87.04
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	86.91
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	86.89
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.67
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.21
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	86.1
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	86.05
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	86.03
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	86.02
d1xpua3	289	Transcription termination factor Rho, ATPase domai	85.75
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.45
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	85.16
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	84.23
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.28
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	83.2
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	82.0
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.74
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	81.32
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	80.92
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	80.79
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.16

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-36  Score=244.65  Aligned_cols=162  Identities=20%  Similarity=0.380  Sum_probs=147.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|+++++. ...+|++.++.......++..+.+.+|||+|++++..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            589999999999999999999999988 5567899999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      ||+++++||+++..|++++.++.++.|.||||||+|+    .++ +.+..++++.+++.++++|+++||++|.||+++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl----~~~-~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~  156 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDL----LDD-SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK  156 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGG----GGG-CSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCCceEEEeeccCCc----ccc-eeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHH
Confidence            9999999999999999999988777777899999996    222 23447789999999999999999999999999999


Q ss_pred             HHHHHHhC
Q 023316          259 FIMAKLFN  266 (284)
Q Consensus       259 ~l~~~i~~  266 (284)
                      +|++.+++
T Consensus       157 ~l~~~~lq  164 (164)
T d1z2aa1         157 YLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=242.19  Aligned_cols=163  Identities=26%  Similarity=0.512  Sum_probs=139.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|++++|. ...+|.+.++..+.+..++..+.+++||++|++++..+++.+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            4689999999999999999999999999 555688999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||+++++||+++..|++.+.......+| +|||||+||.    .+ +.+..++++.++++++++|+||||++|.||+++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~----~~-~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~  156 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE----KE-RHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL  156 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccc----cc-cccchHHHHHHHHHcCCeEEEEecCCCcCHHHH
Confidence            99999999999999999988776544455 7999999962    22 234478899999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |.+|++.+++
T Consensus       157 F~~l~~~i~~  166 (167)
T d1z08a1         157 FLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=243.28  Aligned_cols=165  Identities=16%  Similarity=0.246  Sum_probs=145.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ...+||+|+|++|||||||+++|++++|...+.++..+...+.+.+++..+.+.+||++|++++..++..+++++|++|+
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~   83 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL   83 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence            34799999999999999999999999999777766778888899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhH-CC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKW-NQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~-~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||+++++||+.+..|+..+.+. .. +.|.||||||+||    ... +....+++..+++.++++|++|||++|.||++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl----~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e  158 (173)
T d2fn4a1          84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL----ESQ-RQVPRSEASAFGASHHVAYFEASAKLRLNVDE  158 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG----GGG-CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeech----hhc-cccchhhhhHHHHhcCCEEEEEeCCCCcCHHH
Confidence            99999999999999999998765 33 3444899999996    222 23347889999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|+.+++.+.+.
T Consensus       159 ~f~~l~~~i~k~  170 (173)
T d2fn4a1         159 AFEQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=239.58  Aligned_cols=163  Identities=22%  Similarity=0.417  Sum_probs=146.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...++++.++..+.+.+++..+.+.+|||+|+++|..+++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            3699999999999999999999999998 556688999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++.+|+++..|+..+.+.....+| ||||||+|+    . +...+..++++.+++.+++++++|||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~----~-~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~  158 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL----A-ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL  158 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG----G-GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             eeecccchhhhhhhhhhhhhcccccccccEEEEEeeccc----c-cccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHH
Confidence            99999999999999999999887665555 799999995    2 22233477889999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |.++++.++.
T Consensus       159 f~~l~~~l~~  168 (171)
T d2ew1a1         159 FLDLACRLIS  168 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-35  Score=238.37  Aligned_cols=163  Identities=14%  Similarity=0.202  Sum_probs=141.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|+++++...+.++..+.+.+.+.+++..+.+++||++|++.+..+++.+++++|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            47999999999999999999999999885554343355567788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc-CHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI-NVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~-~v~~  255 (284)
                      ||+++++||+++..|+..+.+. ....+| |+||||+||.    .. +.+..++++++++.++++|+||||+++. ||++
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~----~~-~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~  157 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM----HL-RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  157 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS----TT-CCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchh----hh-ceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHH
Confidence            9999999999999999998776 334455 7999999962    22 2344788999999999999999999875 9999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|..+++.+++
T Consensus       158 ~F~~l~~~i~~  168 (169)
T d1x1ra1         158 TFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=239.66  Aligned_cols=161  Identities=19%  Similarity=0.248  Sum_probs=127.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+|+|++|||||||+++|.+.++....+ ++.+.+.+.+.+++..+.+.+|||+|++++..++..|++++|++|+|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAE-AAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCC-eeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            799999999999999999999987754444 4445556788899999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      +++++||+++..|+.++..... ..+| +|||||+||    .+ ...+...+++++++.++++|+||||++|.||+++|+
T Consensus        81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl----~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~  155 (168)
T d2gjsa1          81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL----VR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE  155 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTC----GG-GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             ccccccccccccccchhhcccccccceEEEeecccch----hh-hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999999987753 3344 799999996    22 223347889999999999999999999999999999


Q ss_pred             HHHHHHhCC
Q 023316          259 FIMAKLFNL  267 (284)
Q Consensus       259 ~l~~~i~~~  267 (284)
                      .+++.+..+
T Consensus       156 ~l~~~i~~~  164 (168)
T d2gjsa1         156 GVVRQIRLR  164 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=237.52  Aligned_cols=162  Identities=23%  Similarity=0.384  Sum_probs=146.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...++++.++....+.+++..+.+++||++|++++..++..+++++|++|+
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            3689999999999999999999999988 445588889999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||+++++||+.+..|+..+.+.....+| +++|||+|+.     .......++++.+++.++++|++|||++|.||+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~  157 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-----AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA  157 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccch-----hhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999887766666 6999999962     22334477899999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 023316          257 FKFIMAKLF  265 (284)
Q Consensus       257 f~~l~~~i~  265 (284)
                      |..+++.++
T Consensus       158 f~~i~~~i~  166 (166)
T d1z0fa1         158 FLEAAKKIY  166 (166)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-35  Score=235.57  Aligned_cols=162  Identities=28%  Similarity=0.480  Sum_probs=146.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      +.++||+|+|++|||||||+++|++++|. ...+|.+.++.......++....+.+||++|++++..++..+++.++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            46899999999999999999999999998 55568888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++|+.+..|+..+.......+| +|||||+|+    . +.+.+..++++++++.++++|+||||++|.||++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl----~-~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e  156 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL----T-DVREVMERDAKDYADSIHAIFVETSAKNAININE  156 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTC----G-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchh----c-cccchhHHHHHHHHHHcCCEEEEEecCCCCCHHH
Confidence            999999999999999999998887766666 699999996    2 2233447889999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 023316          256 IFKFIMAKL  264 (284)
Q Consensus       256 lf~~l~~~i  264 (284)
                      +|.++++.|
T Consensus       157 ~f~~l~~~i  165 (167)
T d1z0ja1         157 LFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999887

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-35  Score=238.50  Aligned_cols=170  Identities=16%  Similarity=0.264  Sum_probs=142.8

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (284)
Q Consensus        96 ~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~  174 (284)
                      +....+||+|+|++|||||||+++|+++.|...+ +|++ +...+.+.+++..+.+.+||++|++.|..++..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            3456899999999999999999999999998544 4555 6667788889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCC------CC-CcccchHHHHHHHHHHcC-CcEEEE
Q 023316          175 ILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRL------PP-DLQWTIATQARAYAKAMK-ATLFFS  245 (284)
Q Consensus       175 iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~------~~-~~~~~~~~~~~~~a~~~~-~~~~~~  245 (284)
                      +++|||+++++||+++. .|+..++....+.|.|+||||+||.++.      .. ..+.+..+++.+++++++ +.|+||
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999876 5666666666666668999999974321      01 112334788999999998 699999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhC
Q 023316          246 SATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      ||++|.||+++|+.+++.+++
T Consensus       164 SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999998864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.5e-35  Score=236.30  Aligned_cols=164  Identities=24%  Similarity=0.457  Sum_probs=146.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|+++++. ...++.+.+...+.+...+..+.+++|||+|++++..+++.+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            3689999999999999999999999988 555688889998999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||+++++++..+..|+..+.......+| ++||||+|+    ++ ...+..++++.+++..+++|++|||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~----~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  158 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM----ED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQT  158 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTC----GG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccc----cc-ccccchhhhHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            99999999999999999888877666566 689999995    22 1233467889999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |+++++.++++
T Consensus       159 f~~l~~~i~ek  169 (169)
T d3raba_         159 FERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhC
Confidence            99999998763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=243.86  Aligned_cols=163  Identities=25%  Similarity=0.362  Sum_probs=140.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+++|++|||||||+++|++++|. ...+|++.++..+.+..++..+.+.+|||+|++.+..+++.++++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            4689999999999999999999999988 455689999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |||+++++||+++..|+..+.+..++.|.+|||||+||.    ...  . .+++..+++..+++|+||||++|.||+++|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~----~~~--~-~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  154 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK----DRK--V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  154 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCS----CSC--C-TTTSHHHHSSCSSEEEEEBTTTTBTTTHHH
T ss_pred             ccccccccccchhHHHHHHHhhccCCCceeeecchhhhh----hhh--h-hhHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999998887766668999999962    221  1 234567888899999999999999999999


Q ss_pred             HHHHHHHhCCc
Q 023316          258 KFIMAKLFNLP  268 (284)
Q Consensus       258 ~~l~~~i~~~~  268 (284)
                      .+|++.+++.+
T Consensus       155 ~~l~~~l~~~~  165 (170)
T d1i2ma_         155 LWLARKLIGDP  165 (170)
T ss_dssp             HHHHHHHHTCT
T ss_pred             HHHHHHHccCC
Confidence            99999997643

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=6.8e-35  Score=235.65  Aligned_cols=162  Identities=16%  Similarity=0.227  Sum_probs=138.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|++++|... .+|.+.++ .+.+.+++..+.+++||++|++++..++..+++++|++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            368999999999999999999999999844 45666554 5678899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCC-ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN-QTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~-~~~-~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||+++++||+++..|++++.+.. ... |.++||||+|+    .+ .+.+..++++.+++.++++|+||||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl----~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e  156 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL----ED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG----GG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccc----cc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHH
Confidence            999999999999999999998763 334 44799999996    22 223447889999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+++++.+..
T Consensus       157 ~f~~l~~~i~~  167 (168)
T d1u8za_         157 VFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            99999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=232.80  Aligned_cols=161  Identities=19%  Similarity=0.206  Sum_probs=140.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|++++|.. ..+|.+.++ .+.+.+++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            46899999999999999999999999884 456777765 5778899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCC-ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN-QTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~-~~~-~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||+++++||+.+..|+..+.+.. ... |.+|||||+||    ..+ +.+..++++.++++++++|+||||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl----~~~-r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL----HME-RVISYEEGKALAESWNAAFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTC----GGG-CCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeecccccc----ccc-cchhHHHHHHHHHHcCCEEEEEecCCCCCHHH
Confidence            999999999999999999987763 334 44799999996    221 22347889999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023316          256 IFKFIMAKLF  265 (284)
Q Consensus       256 lf~~l~~~i~  265 (284)
                      +|+.+++.+.
T Consensus       157 ~f~~li~~~~  166 (167)
T d1xtqa1         157 VFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=234.89  Aligned_cols=160  Identities=22%  Similarity=0.428  Sum_probs=143.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +||+|+|++|||||||+++|+++++. ...++++.+........++..+.+.+||++|++++..++..++++++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999998 55568888888888888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  258 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~  258 (284)
                      |++++.||+++..|+..+..+....+| +|||||+|+.    + .+....+++.++++.++++|+||||++|.||+++|+
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~  155 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA----D-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  155 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG----G-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchh----h-hhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            999999999999999998877655555 7999999962    2 223346789999999999999999999999999999


Q ss_pred             HHHHHHh
Q 023316          259 FIMAKLF  265 (284)
Q Consensus       259 ~l~~~i~  265 (284)
                      +|++.+.
T Consensus       156 ~i~~~l~  162 (164)
T d1yzqa1         156 RVAAALP  162 (164)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhhC
Confidence            9999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-35  Score=234.15  Aligned_cols=162  Identities=17%  Similarity=0.268  Sum_probs=141.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .++||+|+|++|||||||+++|++++|...+.++..++....+.+++..+.+++||++|++.+..++..++++++++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            57999999999999999999999999986555444467778888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||+++++||+++..|+..+.....  +.|.+|||||+||    +.. +....++++.+++.++++|+||||++|.||+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl----~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~  156 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL----ESE-REVSSSEGRALAEEWGCPFMETSAKSKTMVDEL  156 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG----GGG-CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccch----hhc-ccchHHHHHHHHHHcCCeEEEECCCCCcCHHHH
Confidence            999999999999999999877643  3444799999996    222 233477899999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 023316          257 FKFIMAKLF  265 (284)
Q Consensus       257 f~~l~~~i~  265 (284)
                      |+.+++.+.
T Consensus       157 f~~i~~~i~  165 (167)
T d1kaoa_         157 FAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999998763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=233.50  Aligned_cols=164  Identities=25%  Similarity=0.400  Sum_probs=145.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|++++|. ...+|.+.++..+.+..++..+.+.+||++|++.+..+++.+++++|++|+|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            689999999999999999999999998 4556889999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||+++++||+++..|+.++.......++ ++|+||+|+..+.  ..+.+..++++++++.++++|+||||++|.||+++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~--~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F  160 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG--GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS--CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeeccccccccc--chhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            9999999999999999888777665555 7999999973221  113344788999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 023316          258 KFIMAKLF  265 (284)
Q Consensus       258 ~~l~~~i~  265 (284)
                      ..|++.|.
T Consensus       161 ~~i~~~i~  168 (170)
T d1ek0a_         161 LGIGEKIP  168 (170)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHHhc
Confidence            99987653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-35  Score=235.21  Aligned_cols=162  Identities=19%  Similarity=0.311  Sum_probs=139.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ++||+|+|++|||||||+++|++++|... .+|++.. ......+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec-cccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            68999999999999999999999998844 4566644 456678899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~---~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      ||+++++||+++..|+..+.+..   ...|.||||||+|+    .+ .+.+..++++++++.++++|+||||++|.||++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl----~~-~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e  155 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE----SP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKE  155 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG----GG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccc----cc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHH
Confidence            99999999999999998887642   33455799999996    22 223447789999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023316          256 IFKFIMAKLFNL  267 (284)
Q Consensus       256 lf~~l~~~i~~~  267 (284)
                      +|+.|++.+.++
T Consensus       156 ~f~~l~~~~~~~  167 (171)
T d2erxa1         156 LFQELLNLEKRR  167 (171)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHh
Confidence            999999876543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-34  Score=232.72  Aligned_cols=167  Identities=20%  Similarity=0.275  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      +.||+|+|++|||||||+++|++++|...+.++..+...+...+++..+.+++||++|++.|..+++.|++++|++|+||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            68999999999999999999999999855544444666677888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHH-HHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316          180 DLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHN  250 (284)
Q Consensus       180 d~~~~~s~~~~~~-~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~  250 (284)
                      |+++++||+++.. |.+.+.++.++.|.+|||||+|+...-.       .....+..++++.++++++. +|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~  161 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK  161 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            9999999999875 5555666666666689999999632100       01112347789999999984 8999999999


Q ss_pred             cCHHHHHHHHHHHHhC
Q 023316          251 INVNKIFKFIMAKLFN  266 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~  266 (284)
                      .||+++|+.+++.+++
T Consensus       162 ~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         162 DGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=231.30  Aligned_cols=161  Identities=20%  Similarity=0.263  Sum_probs=138.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+.++|...+ +|.+.. ....+.+++..+.+++||++|++.+..+++.+++++|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE-EEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-cceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            5799999999999999999999999999554 465644 45677889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CC-CceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN-QT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN  254 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~-~~-~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~  254 (284)
                      |||+++++||+++..|+..+.+.. .. .|.||||||+|+.     .......+++..+++++ +++|+||||++|.||+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~  155 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-----DERVVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcc-----cccccchhHHHHHHHHhCCCEEEEEcCCCCcCHH
Confidence            999999999999999999987753 33 4448999999962     22333477788888875 7899999999999999


Q ss_pred             HHHHHHHHHHh
Q 023316          255 KIFKFIMAKLF  265 (284)
Q Consensus       255 ~lf~~l~~~i~  265 (284)
                      ++|.++++.+.
T Consensus       156 e~F~~l~~~i~  166 (167)
T d1c1ya_         156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-34  Score=232.42  Aligned_cols=164  Identities=21%  Similarity=0.379  Sum_probs=142.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...++.+.+.........+..+.+.+||++|++.+..+++.+++++|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            3589999999999999999999999988 445577788888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||+++++||+.+..|+..+.++....+| +|||||+|+    . ..+....+++..+++.++++|++|||++|.||+++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~----~-~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL----E-SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA  156 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC----G-GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCch----h-hhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            99999999999999999999888666666 699999995    2 22233477899999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023316          257 FKFIMAKLFNL  267 (284)
Q Consensus       257 f~~l~~~i~~~  267 (284)
                      |.++++.++++
T Consensus       157 f~~i~~~i~~~  167 (173)
T d2a5ja1         157 FINTAKEIYRK  167 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-34  Score=231.69  Aligned_cols=161  Identities=16%  Similarity=0.243  Sum_probs=137.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+|+|++|||||||+++|++++|...+.++..+...+.+.+++..+.+++||++|++.+...+..+++.+|++++||
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   84 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVF   84 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEee
Confidence            58999999999999999999999998855554444777788899999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH-CC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARKW-NQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~~-~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |+++++||+.+..|+..+.+. .. ..|.||||||+|+    ..+ .....++++++++.++++|++|||++|.||+++|
T Consensus        85 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl----~~~-~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f  159 (171)
T d2erya1          85 SVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL----DHQ-RQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF  159 (171)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTC----TTS-CSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             ccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccch----hhh-ccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHH
Confidence            999999999999999887665 23 3444899999996    222 3344778999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 023316          258 KFIMAKLF  265 (284)
Q Consensus       258 ~~l~~~i~  265 (284)
                      ..|++.+.
T Consensus       160 ~~l~~~i~  167 (171)
T d2erya1         160 HELVRVIR  167 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=230.57  Aligned_cols=164  Identities=26%  Similarity=0.433  Sum_probs=146.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+++|++|||||||+++|++++|. ...+|.+.++....+..++..+.+.+||++|++.+..+++.++++++++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            35799999999999999999999999988 55668888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||++++++|+++..|+..+.+.....+| +|||||+|+    .. .+.+..++++++++.++++|+||||++|.||++
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl----~~-~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e  158 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL----AN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG----GG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccc----cc-cccccHHHHHHHHHhcCCEEEEeeCCCCCCHHH
Confidence            999999999999999999998777655555 799999996    22 233447889999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|+.|++.+.+
T Consensus       159 ~f~~l~~~i~~  169 (170)
T d1r2qa_         159 IFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHTSCC
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-34  Score=232.23  Aligned_cols=170  Identities=22%  Similarity=0.337  Sum_probs=142.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      +..+||+|+|++|||||||+++|++++|...+. |++ +...+.+.+++..+.+.+||++|++.+..++..+++++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            457999999999999999999999999885544 555 666777888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHH-HHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023316          177 FMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMK-ATLFFSSA  247 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~-~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~-~~~~~~Sa  247 (284)
                      +|||+++++||+++.. |+..++.+..+.|.||||||+||..+..       .........++..+++.++ ++|+||||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999975 7777777766666689999999621100       0011223667888999887 79999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCc
Q 023316          248 THNINVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       248 ~~~~~v~~lf~~l~~~i~~~~  268 (284)
                      ++|.||+++|+.+++.+++.|
T Consensus       162 k~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999998664

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=232.27  Aligned_cols=172  Identities=17%  Similarity=0.261  Sum_probs=142.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|++++|...+ +|++ +.......+++..+.+++||++|+++|..+++.+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            4689999999999999999999999998544 5655 5566777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHH-HHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023316          178 MFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMK-ATLFFSSAT  248 (284)
Q Consensus       178 v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~  248 (284)
                      |||+++++||+++.. |...+.....+.|.++||||+||.+...       .....+..++++.++++++ ++|+||||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            999999999999975 5555666566656579999999632110       0112244788999999975 799999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCcccc
Q 023316          249 HNINVNKIFKFIMAKLFNLPWTV  271 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~~~~~  271 (284)
                      +|.||+++|+.+++.+++.+...
T Consensus       161 ~~~~V~e~f~~l~~~~~~~~~~k  183 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALEPPEPK  183 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTSCCSTT
T ss_pred             CCcCHHHHHHHHHHHHhcCcCCC
Confidence            99999999999999998775543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-34  Score=231.02  Aligned_cols=166  Identities=25%  Similarity=0.446  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...++.+.+...+.+.+++..+.+.+||++|+++|..++..++++++++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            4689999999999999999999999988 555688888888889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||+++++||+.+.+|+..+.++....+| +|||||+|+.    +. +....+....+++.++.++++|||++|.||+++
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~  157 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR----HL-RAVPTDEARAFAEKNNLSFIETSALDSTNVEEA  157 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccc----cc-ccchHHHHHHhhcccCceEEEEecCCCcCHHHH
Confidence            99999999999999999999988766666 6999999962    22 223356678888899999999999999999999


Q ss_pred             HHHHHHHHhCCcc
Q 023316          257 FKFIMAKLFNLPW  269 (284)
Q Consensus       257 f~~l~~~i~~~~~  269 (284)
                      |+++++.+++...
T Consensus       158 f~~l~~~i~~~~~  170 (175)
T d2f9la1         158 FKNILTEIYRIVS  170 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999875433

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=227.40  Aligned_cols=162  Identities=26%  Similarity=0.485  Sum_probs=135.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ..+||+|+|++|||||||+++|+++++. ..++ +++.++....+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            4689999999999999999999999986 4434 6788999889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      +|||+++++|++.+..|+..+........| ++|+||+|+.    . ...+..+++..+++.++++|+++||++|.||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~----~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e  159 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA----H-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT----S-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechh----h-cccccHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            999999999999999998888777655444 7999999962    2 223347789999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023316          256 IFKFIMAKLF  265 (284)
Q Consensus       256 lf~~l~~~i~  265 (284)
                      +|+++++.+.
T Consensus       160 ~f~~l~~~i~  169 (170)
T d2g6ba1         160 AFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHcC
Confidence            9999999875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=233.30  Aligned_cols=167  Identities=20%  Similarity=0.370  Sum_probs=148.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...+|.+..+....+.+++..+.+.+|||+|+++|..+++.++++++++|+
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            4699999999999999999999999988 555688888888899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++++|.++..|+..+.+......| |+||||+|+.    + ......++...+++..+++|+++||++|.||+++
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK----D-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDA  159 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT----T-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccc----c-ccchhHHHHhhhhhccCcceEEEecCcCccHHHH
Confidence            99999999999999999988877665555 7999999962    2 2334477889999999999999999999999999


Q ss_pred             HHHHHHHHhCCccc
Q 023316          257 FKFIMAKLFNLPWT  270 (284)
Q Consensus       257 f~~l~~~i~~~~~~  270 (284)
                      |+++++.+.+....
T Consensus       160 f~~l~~~i~~~~~~  173 (194)
T d2bcgy1         160 FLTMARQIKESMSQ  173 (194)
T ss_dssp             HHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999988765433

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-34  Score=231.56  Aligned_cols=165  Identities=24%  Similarity=0.364  Sum_probs=146.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...++.+.+.....+..++..+.+++|||+|++++..+++.+++.++++|+
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            3589999999999999999999999988 445578888888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||.+++++|.++..|+..+.......+| |+||||+|+    .. ......+.+..+++.++++|++|||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~----~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~  158 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL----DA-DREVTFLEASRFAQENELMFLETSALTGENVEEA  158 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG----GG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEecccchhHHHHhhhhcccccccCCceEEEEEEecccc----cc-hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            99999999999999999999887665555 799999995    22 2333467788999999999999999999999999


Q ss_pred             HHHHHHHHhCCc
Q 023316          257 FKFIMAKLFNLP  268 (284)
Q Consensus       257 f~~l~~~i~~~~  268 (284)
                      |.++++.++++.
T Consensus       159 f~~l~~~i~~~~  170 (174)
T d2bmea1         159 FVQCARKILNKI  170 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987553

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-34  Score=228.56  Aligned_cols=162  Identities=26%  Similarity=0.463  Sum_probs=141.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|+++++. ...+|++.++..+.+.+++..+.+.+|||+|++.|..+++.++++++++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            489999999999999999999999988 5557999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ||.++++||+++..|+..+........| +++++|.|+      ..+....++++.+++.+++++++|||++|.||+++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f  155 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  155 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC------TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhh------hhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHH
Confidence            9999999999999999888888766565 789999995      223344778999999999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 023316          258 KFIMAKLFNL  267 (284)
Q Consensus       258 ~~l~~~i~~~  267 (284)
                      ++|++.+.++
T Consensus       156 ~~l~~~i~~k  165 (166)
T d1g16a_         156 FTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999988653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=227.67  Aligned_cols=161  Identities=15%  Similarity=0.234  Sum_probs=140.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      .++||+|+|++|||||||+++|+++.+...+ ++.+.++. ..+..++..+.+.+||++|++.+...++.+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            4799999999999999999999999998554 46665554 556788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      |||++++.+|+++..|+..+.+...  ..|.|+||||+|+    +  .+....++++.+++.++++|++|||++|+||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl----~--~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e  154 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL----A--ARTVESRQAQDLARSYGIPYIETSAKTRQGVED  154 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTC----S--CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccc----c--cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHH
Confidence            9999999999999999999987643  3445799999996    2  233447789999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|.++++.+.+
T Consensus       155 ~f~~i~~~i~~  165 (166)
T d1ctqa_         155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-34  Score=231.68  Aligned_cols=163  Identities=21%  Similarity=0.399  Sum_probs=116.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...+|++.++..+.+.+++..+.+.+|||+|++.|..+++.+++++|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            4689999999999999999999999988 555688999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      |||++++.||+.+..|+..+........| ++|+||.|+.    .. +....+++..+++..+++|++|||++|+||+++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN----DK-RQVSKERGEKLALDYGIKFMETSAKANINVENA  159 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC----SC-CCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccch----hh-cccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999877655455 7999999962    22 233367788899999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |.++++.+..
T Consensus       160 f~~l~~~i~~  169 (173)
T d2fu5c1         160 FFTLARDIKA  169 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998854

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-34  Score=228.77  Aligned_cols=160  Identities=14%  Similarity=0.250  Sum_probs=135.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ++||+|+|++|||||||+++|++++|. ...||++.++. ..+..++..+.+++||++|++.+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            689999999999999999999999988 44567787765 445678999999999999999874 556789999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-C-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc-CHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI-NVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~-~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~-~v~~  255 (284)
                      ||+++++||+++..|+..+... . .+.|.++||||+||    . +.+.+..++++++|++++++|+||||++|. ||++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl----~-~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e  154 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL----D-HSRQVSTEEGEKLATELACAFYECSACTGEGNITE  154 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG----G-GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhh----h-hhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHH
Confidence            9999999999999887766554 3 34444799999996    2 222345889999999999999999999998 6999


Q ss_pred             HHHHHHHHHhC
Q 023316          256 IFKFIMAKLFN  266 (284)
Q Consensus       256 lf~~l~~~i~~  266 (284)
                      +|..+++.+.+
T Consensus       155 ~F~~l~~~i~~  165 (168)
T d2atva1         155 IFYELCREVRR  165 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=228.77  Aligned_cols=160  Identities=20%  Similarity=0.283  Sum_probs=135.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCC---CCcCCcccccccccCCcE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVG---GDSRSFDHVPIACKDAVA  174 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~---G~e~~~~~~~~~~~~ad~  174 (284)
                      .+||+++|++|||||||+++|.+..+.  ...+|++.+++.+.+.+++..+.+.+||+.   |+++|  ++..+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            689999999999999999999988766  455688999999999999999999999965   56665  66778999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023316          175 ILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  252 (284)
Q Consensus       175 iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~  252 (284)
                      +|+|||+++++||+++..|+..+....  .+.|.||||||+||    .+. +.+..++++++++.++++|++|||++|.|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl----~~~-~~v~~~~~~~~a~~~~~~~~e~Sak~g~~  155 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL----VRC-REVSVSEGRACAVVFDCKFIETSAAVQHN  155 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC----GGG-CCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccc----ccc-ccccHHHHHHHHHHcCCeEEEEeCCCCcC
Confidence            999999999999999999999987653  34445799999996    222 23447788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 023316          253 VNKIFKFIMAKLFN  266 (284)
Q Consensus       253 v~~lf~~l~~~i~~  266 (284)
                      |+++|+.+++.+..
T Consensus       156 i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         156 VKELFEGIVRQVRL  169 (172)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-33  Score=226.06  Aligned_cols=166  Identities=23%  Similarity=0.434  Sum_probs=147.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii  176 (284)
                      ...+||+|+|++|||||||+++|.++++. ...++.+..+..+.+.+++..+.+.+|||+|++++..+++.+++++|++|
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999998 55557888888888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCC-Cce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          177 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       177 lv~d~~~~~s~~~~~~~~~~l~~~~~~-~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|||++++.+++.+..|+.++.+.... .+| ++++||.|+      ....+..+++.++++.++++++++||++|+||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~------~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK------ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQ  158 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS------SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeecccc------ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHH
Confidence            999999999999999999999776432 344 699999995      223344788899999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcc
Q 023316          255 KIFKFIMAKLFNLPW  269 (284)
Q Consensus       255 ~lf~~l~~~i~~~~~  269 (284)
                      ++|+++++.+++.|.
T Consensus       159 e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         159 CAFEELVEKIIQTPG  173 (177)
T ss_dssp             HHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHccCcc
Confidence            999999999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.5e-33  Score=227.38  Aligned_cols=176  Identities=25%  Similarity=0.368  Sum_probs=152.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+|+|++|||||||+++|+++++. ...+|.+.++..+.+...+..+.+.+||++|++.+...+..++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            489999999999999999999999988 4556889999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC-----CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCCcC
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHNIN  252 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~~-----~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~~~~  252 (284)
                      ||.+++.+|+.+..|++++.....     ..|.||||||+||    .+  ..+..++...++. ..+++|++|||++|.|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl----~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~g  155 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL----EN--RQVATKRAQAWCYSKNNIPYFETSAKEAIN  155 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTS----SC--CCSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecc----cc--cchhHHHHHHHHHHhcCCeEEEEcCCCCcC
Confidence            999999999999999998877532     2344899999996    22  2344556666664 4578999999999999


Q ss_pred             HHHHHHHHHHHHhCCccccccccCCCCCC
Q 023316          253 VNKIFKFIMAKLFNLPWTVKRNLTIGEPI  281 (284)
Q Consensus       253 v~~lf~~l~~~i~~~~~~~~~~~~~~~~~  281 (284)
                      |+++|+++++.++++..+.+......+||
T Consensus       156 I~e~f~~l~~~i~~~~~~~~~~~~~~~~~  184 (184)
T d1vg8a_         156 VEQAFQTIARNALKQETEVELYNEFPEPI  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHhccccccccCCCCCCC
Confidence            99999999999999888887777777775

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-33  Score=225.79  Aligned_cols=168  Identities=24%  Similarity=0.302  Sum_probs=139.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      ++||+++|++|||||||+++|+.++|...+.++..+...+.+.+++..+.+++||++|++.+..+++.+++++|++|+||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            68999999999999999999999999855554444666677888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHH-HHHHHhHCCCCceEEEEeCCCCCCCC------CCCcc-cchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316          180 DLTSRCTLNSIVGW-YSEARKWNQTAIPILIGTKFDDFVRL------PPDLQ-WTIATQARAYAKAMKA-TLFFSSATHN  250 (284)
Q Consensus       180 d~~~~~s~~~~~~~-~~~l~~~~~~~~~Ilv~nK~Dl~~~~------~~~~~-~~~~~~~~~~a~~~~~-~~~~~Sa~~~  250 (284)
                      |+++++||+.+..| ...+....++.|.||||||+|+....      ....+ .+..+++..++++++. +|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            99999999998865 55556666655558999999963211      01112 2347889999999874 8999999999


Q ss_pred             cC-HHHHHHHHHHHHhCC
Q 023316          251 IN-VNKIFKFIMAKLFNL  267 (284)
Q Consensus       251 ~~-v~~lf~~l~~~i~~~  267 (284)
                      .| |+++|+.+++.++++
T Consensus       162 ~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         162 ENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            85 999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-32  Score=223.73  Aligned_cols=164  Identities=24%  Similarity=0.402  Sum_probs=126.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      .+||+++|++|||||||+++|+++++.. ..++.+.......... +...+.+.+|||+|++++..++..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4899999999999999999999999884 4457776666555544 4455778999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC----C-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCc
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN----Q-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNI  251 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~----~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~  251 (284)
                      |||++++.||+.+..|++++.++.    . ..|.||||||+|+    .+..+.+..++++++++.++ ++|++|||++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl----~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~  157 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA----EESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  157 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS----CGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccch----hhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence            999999999999999999987652    2 3344799999995    33333345788999999986 799999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 023316          252 NVNKIFKFIMAKLFNL  267 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~~  267 (284)
                      ||+++|+++++.++++
T Consensus       158 gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         158 NVDTAFEEIARSALQQ  173 (175)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999988654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=231.80  Aligned_cols=164  Identities=27%  Similarity=0.441  Sum_probs=140.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC----------eEEEEEEEeCCCCcCCcccccc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG----------ARIAFSIWDVGGDSRSFDHVPI  167 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~----------~~~~l~l~Dt~G~e~~~~~~~~  167 (284)
                      ..+||+|+|++|||||||+++|+++++. ...++.+.++..+.+.+++          ..+.+.+|||+|+++|..+++.
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            3689999999999999999999999988 4445778887777776643          3478999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  245 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~-~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  245 (284)
                      +++++|++|+|||++++.+|+.+..|+..+..+. ...+| +|||||+||    . ..+.+..+++.+++++++++|++|
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl----~-~~~~v~~~e~~~~~~~~~~~~~e~  158 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL----P-DQREVNERQARELADKYGIPYFET  158 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC----G-GGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccc----h-hhhcchHHHHHHHHHHcCCEEEEE
Confidence            9999999999999999999999999998876653 23455 699999996    2 223344788999999999999999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCC
Q 023316          246 SATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ||++|.||+++|+++++.+.++
T Consensus       159 Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         159 SAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-32  Score=218.07  Aligned_cols=162  Identities=23%  Similarity=0.420  Sum_probs=140.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      ..+||+|+|++|||||||+++|+++++. ...+|++..+..+.+..++..+.+.+||++|+..+...+..++..++++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            4689999999999999999999999998 445588888888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC----CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCc
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN----QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNI  251 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~----~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~  251 (284)
                      +||++++.||+.+..|++++.+..    ...+| ||||||+||.      .+.+..+++++++++.+ ++|+||||++|.
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~------~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~  158 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS------ERQVSTEEAQAWCRDNGDYPYFETSAKDAT  158 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS------SCSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh------hccCcHHHHHHHHHHcCCCeEEEEcCCCCc
Confidence            999999999999999999887652    22344 7999999962      23345788999999875 899999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023316          252 NVNKIFKFIMAKLFN  266 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~  266 (284)
                      ||+++|+++++.++.
T Consensus       159 gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         159 NVAAAFEEAVRRVLA  173 (174)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999998864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-32  Score=221.83  Aligned_cols=163  Identities=18%  Similarity=0.302  Sum_probs=135.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil  177 (284)
                      .+.+||+++|++|||||||+++|++++|....++.+.. +.+.+.++|..+.+.+|||+|++++     .|++.+|++|+
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEE-EEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCcccee-EEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            45799999999999999999999999987655555544 4678889999999999999999864     48899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC---CCCce-EEEEeCCCCCCCCCCCcccc-hHHHHHHHHHH-cCCcEEEEcCCCCc
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWN---QTAIP-ILIGTKFDDFVRLPPDLQWT-IATQARAYAKA-MKATLFFSSATHNI  251 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~---~~~~~-Ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~a~~-~~~~~~~~Sa~~~~  251 (284)
                      |||+++++||+++..|++.+....   ...+| ++||||.|+    +....+. ..++++.++.. .+++|+||||++|.
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~----d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  152 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI----SASSPRVVGDARARALCADMKRCSYYETCATYGL  152 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTC----CSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTB
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCc----chhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCc
Confidence            999999999999999999887653   34455 699999995    3333333 36788888655 57899999999999


Q ss_pred             CHHHHHHHHHHHHhCCccc
Q 023316          252 NVNKIFKFIMAKLFNLPWT  270 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~~~~~  270 (284)
                      ||+++|..+++.+.....+
T Consensus       153 ~v~~~F~~l~~~i~~~~~~  171 (175)
T d2bmja1         153 NVDRVFQEVAQKVVTLRKQ  171 (175)
T ss_dssp             THHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhh
Confidence            9999999999988765543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=5.3e-32  Score=217.34  Aligned_cols=157  Identities=26%  Similarity=0.480  Sum_probs=135.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-cccccccCCcEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF  177 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-~~~~~~~~ad~iil  177 (284)
                      .+||+|+|++|||||||+++|+++++. ...++.+..+..+...+.+....+.+||++|.+.+.. .++.|++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            589999999999999999999999988 4555888888888889999999999999999988654 56789999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC---CcC
Q 023316          178 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NIN  252 (284)
Q Consensus       178 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~---~~~  252 (284)
                      |||+++++||+++..|+.++.++.. ..+| +|||||+||.    ++ +.+..+++++++++++++|+||||++   ++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~  156 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR----SA-IQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  156 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccch----hc-cchhHHHHHHHHHHCCCEEEEEecccCCcCcC
Confidence            9999999999999999999988743 3444 7999999962    22 23457889999999999999999997   559


Q ss_pred             HHHHHHHHH
Q 023316          253 VNKIFKFIM  261 (284)
Q Consensus       253 v~~lf~~l~  261 (284)
                      |+++|++|+
T Consensus       157 V~e~F~~lA  165 (165)
T d1z06a1         157 VEAIFMTLA  165 (165)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.96  E-value=4e-30  Score=206.35  Aligned_cols=159  Identities=17%  Similarity=0.254  Sum_probs=125.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ++||+++|++|||||||+++|.++++. ...+|.|.++.  .+..++  +.+.+||++|++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            689999999999999999999999988 55568887654  344444  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-C-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~-~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||++++++|++...|+..+.+. . .+.|.+|||||.|+.....  ...........+++..+++++++||++|+||+++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            9999999999999888877554 2 3444479999999632111  0111122223334455778999999999999999


Q ss_pred             HHHHHHHH
Q 023316          257 FKFIMAKL  264 (284)
Q Consensus       257 f~~l~~~i  264 (284)
                      |++|++.+
T Consensus       156 ~~~l~~~~  163 (164)
T d1zd9a1         156 LQWLIQHS  163 (164)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHcc
Confidence            99998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=6.7e-30  Score=206.96  Aligned_cols=158  Identities=17%  Similarity=0.249  Sum_probs=122.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .++||+++|++|||||||+++|.++++....++.|.+.  ..+...+  +.+.+||++|++.++..+..+++.+|++|+|
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   90 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE--EEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeE--EEeccCC--eeEeEeeccccccchhHHHHHhhccceeEEe
Confidence            47999999999999999999999999876666777654  3444544  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCce-EEEEeCCCCCCCCCCCcccchHHH-HHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTIATQ-ARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      ||++++.++.++..|+..+.... ...+| +||+||+||.   +........+. ...+++..++++++|||++|+||++
T Consensus        91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e  167 (176)
T d1fzqa_          91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL---TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD  167 (176)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST---TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccc---ccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHH
Confidence            99999999999998887765542 23444 7899999973   21111111111 1123344567899999999999999


Q ss_pred             HHHHHHHH
Q 023316          256 IFKFIMAK  263 (284)
Q Consensus       256 lf~~l~~~  263 (284)
                      +|+||++.
T Consensus       168 ~~~~l~~~  175 (176)
T d1fzqa_         168 GMNWVCKN  175 (176)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=8.2e-30  Score=207.84  Aligned_cols=162  Identities=17%  Similarity=0.195  Sum_probs=121.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|.++++....+|.+....  .+...+  +.+.+||++|++.+..++..++++++++++|
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   91 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV   91 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEE--EEeeCC--EEEEEEecccccccchhHHhhhccceeEEEE
Confidence            479999999999999999999998888766677776644  333444  6788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      ||++++.++.+...|+..+.+. ....+| +||+||+|+....+.  +..........+...++++++|||++|+||+++
T Consensus        92 ~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~  169 (182)
T d1moza_          92 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA--SEVSKELNLVELKDRSWSIVASSAIKGEGITEG  169 (182)
T ss_dssp             EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH--HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             eeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCH--HHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHH
Confidence            9999999999998888765443 334455 799999996221111  111111112233445678999999999999999


Q ss_pred             HHHHHHHHhC
Q 023316          257 FKFIMAKLFN  266 (284)
Q Consensus       257 f~~l~~~i~~  266 (284)
                      |++|++.+.+
T Consensus       170 ~~~l~~~i~~  179 (182)
T d1moza_         170 LDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=1e-28  Score=197.97  Aligned_cols=157  Identities=17%  Similarity=0.227  Sum_probs=121.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||+++|.++.+....+|.+....  .+..++  +.+.+|||+|++.++..+..+++.++++++||
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   77 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   77 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeee--eccccc--cceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence            68999999999999999999999887666667775543  344444  67889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHh-HCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCH
Q 023316          180 DLTSRCTLNSIVGWYSEARK-WNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINV  253 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~-~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~Sa~~~~~v  253 (284)
                      |+++..++.+...|+..+.. .....+| ++|+||+|+.    +..  ...+....+    ++..++++++|||++|+||
T Consensus        78 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  151 (165)
T d1ksha_          78 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP----GAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDL  151 (165)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST----TCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             ecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccc----ccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCH
Confidence            99999999888766655543 3334445 7999999962    221  122222222    1223567899999999999


Q ss_pred             HHHHHHHHHHHhC
Q 023316          254 NKIFKFIMAKLFN  266 (284)
Q Consensus       254 ~~lf~~l~~~i~~  266 (284)
                      +++|++|++.+.+
T Consensus       152 ~e~~~~l~~~i~~  164 (165)
T d1ksha_         152 LPGIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999998865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=3.2e-29  Score=202.74  Aligned_cols=159  Identities=16%  Similarity=0.175  Sum_probs=123.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ..+||+++|++|||||||+++|+++++....+|.+..+.  .....  .+.+.+||++|++.++..+..++++++++|+|
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEE--EEEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEE--Eeecc--ceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            369999999999999999999999888766677776643  33333  46788999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK  255 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~  255 (284)
                      ||+++.+++.++..|+..+.+. .....| ++|+||+||.+.   .....+ ...+...++..++.+++|||++|+||+|
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc---ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            9999999999998887776543 333444 799999996211   111111 1112233444567899999999999999


Q ss_pred             HHHHHHHHH
Q 023316          256 IFKFIMAKL  264 (284)
Q Consensus       256 lf~~l~~~i  264 (284)
                      +|++|...+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=9.6e-28  Score=190.16  Aligned_cols=157  Identities=17%  Similarity=0.171  Sum_probs=122.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d  180 (284)
                      +||+|+|++|||||||+++|+++++...+++....    ....+...+.+.+||++|++.+...+..+++.+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            69999999999999999999999887544433322    23445667889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC-CCCce-EEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          181 LTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       181 ~~~~~s~~~~~~~~~~l~~~~-~~~~~-Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      ++++.++..+..|+.++.... ...+| ++++||.|+.+.   .....+ ......+++..++++++|||++|+||+++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccc---ccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            999999999998888776543 24445 699999996211   111111 223334556667899999999999999999


Q ss_pred             HHHHHHH
Q 023316          258 KFIMAKL  264 (284)
Q Consensus       258 ~~l~~~i  264 (284)
                      ++|++++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.6e-25  Score=183.00  Aligned_cols=159  Identities=21%  Similarity=0.208  Sum_probs=112.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      ++||++||+.|||||||+++|..+++    +|+|..    +..++...+.+++|||+|+++++.++..|++.++++++||
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~   73 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIV----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV   73 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEE----EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC----CCccEE----EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEE
Confidence            78999999999999999999987765    455543    2333444577899999999999999999999999999999


Q ss_pred             eCCChhhHH-----------HHHHHHHHHHhHCCCCce-EEEEeCCCCCCC----------CCCCcccchHHHH-----H
Q 023316          180 DLTSRCTLN-----------SIVGWYSEARKWNQTAIP-ILIGTKFDDFVR----------LPPDLQWTIATQA-----R  232 (284)
Q Consensus       180 d~~~~~s~~-----------~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~----------~~~~~~~~~~~~~-----~  232 (284)
                      |+++.+++.           ....|...+........| ++++||+|+...          .+.........++     .
T Consensus        74 d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (195)
T d1svsa1          74 ALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC  153 (195)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHH
T ss_pred             eecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHH
Confidence            999988763           334565555544444445 799999994210          0111011111111     1


Q ss_pred             HHHHH------cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          233 AYAKA------MKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       233 ~~a~~------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      .+...      .++.+++|||++|.||+++|+.+...|++
T Consensus       154 ~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         154 QFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            12211      13457789999999999999999887764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=9.9e-25  Score=175.94  Aligned_cols=158  Identities=15%  Similarity=0.177  Sum_probs=115.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .++||+|+|++|||||||++++.++++....++.+...  ......+  +.+.+||++|++.....+..++..+++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeE--EEEeecc--eEEEEeccccccccccchhhhhccceeeeee
Confidence            46999999999999999999999998875555555433  3444444  6688999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccch--HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTI--ATQARAYAKAMKATLFFSSATHNINVN  254 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~Sa~~~~~v~  254 (284)
                      +|.++.+++.....+.......  ....|+++|+||+|+    +.......  .......+...+++++++||++|+||+
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl----~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV----KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS----TTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccc----cccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999998887665555443  234455899999996    22222111  111112223446789999999999999


Q ss_pred             HHHHHHHHHH
Q 023316          255 KIFKFIMAKL  264 (284)
Q Consensus       255 ~lf~~l~~~i  264 (284)
                      ++|++|++++
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.91  E-value=4.8e-24  Score=169.74  Aligned_cols=162  Identities=17%  Similarity=0.211  Sum_probs=123.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      ++||+++|++|||||||+++|+++++....++.+....  ....++  +.+.+||.+|.+.+......++...+++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   80 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeee--eeccCc--eEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence            68999999999999999999999998866666664433  333344  56789999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHh-HCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316          180 DLTSRCTLNSIVGWYSEARK-WNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  257 (284)
Q Consensus       180 d~~~~~s~~~~~~~~~~l~~-~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf  257 (284)
                      |+++..++.....++..... .....++ ++++||.|+......  .......+..++...++++++|||++|.||+++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          81 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH--HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            99999998888765444433 3334445 699999997321111  1111333344556667899999999999999999


Q ss_pred             HHHHHHHhCC
Q 023316          258 KFIMAKLFNL  267 (284)
Q Consensus       258 ~~l~~~i~~~  267 (284)
                      ++|++.+.++
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.6e-23  Score=169.67  Aligned_cols=159  Identities=17%  Similarity=0.166  Sum_probs=114.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc--------cccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  169 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~--------~~~~  169 (284)
                      .-+|+|+|.+|||||||+++|++.+..  ...+.+..+.........+.  .+.+|||+|........        ..++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRR--QIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTE--EEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeee--eeeecccccccccccccchhccccccccc
Confidence            447999999999999999999998754  44444444444445555654  47799999987654333        2346


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSAT  248 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~  248 (284)
                      .+||++|+|+|+++..+..+ ..|++.+++...+.|.|+|+||+|+.    ..    ..+....+.+.++ ..++++||+
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~----~~----~~~~~~~~~~~~~~~~~~~iSA~  153 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAA----KY----PEEAMKAYHELLPEAEPRMLSAL  153 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGC----SS----HHHHHHHHHHTSTTSEEEECCTT
T ss_pred             ccccceeeeechhhhhcccc-cchhhheeccccchhhhhhhcccccc----cC----HHHHHHHHHhhcccCceEEEecC
Confidence            89999999999988765433 45666666655566668999999962    11    1233455555555 578899999


Q ss_pred             CCcCHHHHHHHHHHHHhCCcc
Q 023316          249 HNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      +|.|+++++++|++.+.+.||
T Consensus       154 ~~~gi~~L~~~i~~~lpe~p~  174 (178)
T d1wf3a1         154 DERQVAELKADLLALMPEGPF  174 (178)
T ss_dssp             CHHHHHHHHHHHHTTCCBCCC
T ss_pred             CCCCHHHHHHHHHHhCCCCCC
Confidence            999999999999987765554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.7e-24  Score=176.27  Aligned_cols=162  Identities=19%  Similarity=0.159  Sum_probs=121.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      ++||+++|+.|||||||+++|..+.+ .+.||+|.++.  .+  ....+.+++||++|++.++..+..+++.+++++++|
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   76 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEY--PF--DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV   76 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEE--EE--ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEE--EE--eccceeeeeccccccccccccccccccccceeeEee
Confidence            68999999999999999999999887 46789998754  23  344577889999999999999999999999999999


Q ss_pred             eCCChh-----------hHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCC-C---------CC-cccchHHHHHHHHH
Q 023316          180 DLTSRC-----------TLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRL-P---------PD-LQWTIATQARAYAK  236 (284)
Q Consensus       180 d~~~~~-----------s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~-~---------~~-~~~~~~~~~~~~a~  236 (284)
                      |.++..           .++....|...+........| ++++||.|+.... .         +. ......+....+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  156 (200)
T d2bcjq2          77 ALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL  156 (200)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHH
T ss_pred             eccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHH
Confidence            998754           456677888888766555555 7999999952110 0         00 00011222222221


Q ss_pred             ----------HcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316          237 ----------AMKATLFFSSATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       237 ----------~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                                ...+.+++|||++|.||+++|+.+.+.|++
T Consensus       157 ~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         157 KMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence                      112457899999999999999999888864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4e-23  Score=163.28  Aligned_cols=151  Identities=15%  Similarity=0.167  Sum_probs=114.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~  181 (284)
                      ||+++|++|||||||+++|+++++....+|.+....  .  .....+.+.+||+.|...+......++..+++++++||.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--E--LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--E--ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEE--E--eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            899999999999999999999988765566664433  2  333345577999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC-CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHH-----------HHHcCCcEEEEcCC
Q 023316          182 TSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAY-----------AKAMKATLFFSSAT  248 (284)
Q Consensus       182 ~~~~s~~~~~~~~~~l~~~~-~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------a~~~~~~~~~~Sa~  248 (284)
                      ++..++.....|+..+.... ...+| ++++||.|+.....      ..+....+           ....++.+++|||+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  151 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS------EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  151 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC------HHHHHHHHTCSSCCC---CCSSCCEEEEEEBTT
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCC------HHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCC
Confidence            99999998887777766543 23344 69999999632211      11111111           12234578999999


Q ss_pred             CCcCHHHHHHHHHH
Q 023316          249 HNINVNKIFKFIMA  262 (284)
Q Consensus       249 ~~~~v~~lf~~l~~  262 (284)
                      +|+||+|+|+||++
T Consensus       152 tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         152 MRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTBSHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHhC
Confidence            99999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.4e-23  Score=166.83  Aligned_cols=150  Identities=17%  Similarity=0.187  Sum_probs=113.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------cccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK  170 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~~  170 (284)
                      +||+++|.+|||||||+++|++.+..  ...+++..+.....+...+.  .+.+||++|.......        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCc--eeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999988765  44454444444455666664  4679999998764322        234578


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  250 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~  250 (284)
                      .+|++++++|..+..+++....|.+.+.......|.|+|+||+||..   +. ..        +.+..+.+++++||++|
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~---~~-~~--------~~~~~~~~~~~iSAk~~  147 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG---ET-LG--------MSEVNGHALIRLSARTG  147 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC---CC-CE--------EEEETTEEEEECCTTTC
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhh---hH-HH--------HHHhCCCcEEEEECCCC
Confidence            99999999999999888888888777766665666689999999632   11 11        01123578999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023316          251 INVNKIFKFIMAKL  264 (284)
Q Consensus       251 ~~v~~lf~~l~~~i  264 (284)
                      .|+++++++|++.+
T Consensus       148 ~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         148 EGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3e-23  Score=170.36  Aligned_cols=161  Identities=16%  Similarity=0.197  Sum_probs=105.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      .+||+++|++|||||||+++|.   +. ...||+|.+..  ++.+.+  +.+++||++|++.++..+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   44 56679997643  444444  6688999999999999999999999999999


Q ss_pred             EeCCChhh----------HHHHHHHHHHHHh-HCCCCce-EEEEeCCCCCCC----------CCCCc-ccchHHHHHHHH
Q 023316          179 FDLTSRCT----------LNSIVGWYSEARK-WNQTAIP-ILIGTKFDDFVR----------LPPDL-QWTIATQARAYA  235 (284)
Q Consensus       179 ~d~~~~~s----------~~~~~~~~~~l~~-~~~~~~~-Ilv~nK~Dl~~~----------~~~~~-~~~~~~~~~~~a  235 (284)
                      ||.++..+          +++...|+..+.. .....+| +|+|||+|+.+.          .++.. .....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99987543          3344444444432 2233444 799999996321          00100 001122333322


Q ss_pred             HH-----------cCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          236 KA-----------MKATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       236 ~~-----------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      ..           ..+-+++|||+++.||+++|+.+...|++.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            21           124466899999999999999988877643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.86  E-value=2.7e-21  Score=155.88  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=109.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv  178 (284)
                      ...||+++|++|||||||+++|+++.+....++.+.+..  .+.+++.  .+.+||+.|+..+...+..+++..++++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGM--TFTTFDLGGHIQARRVWKNYLPAINGIVFL   87 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTE--EEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee--EEEeccc--ccccccccchhhhhhHHhhhhcccceeeee
Confidence            368999999999999999999999988766666665543  4555664  467999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----------------HHcC
Q 023316          179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----------------KAMK  239 (284)
Q Consensus       179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-----------------~~~~  239 (284)
                      +|+++...+.....++......  ..+.|.++++||.|+....+       ..+.....                 ...+
T Consensus        88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  160 (186)
T d1f6ba_          88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS-------EERLREMFGLYGQTTGKGSVSLKELNARP  160 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC-------HHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCC-------HHHHHHHHhhcccchhhhhhhHHHhhcCC
Confidence            9999999988877655554432  23455589999999632211       11222211                 1123


Q ss_pred             CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          240 ATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       240 ~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +++++|||++|+|++|+|+||++.+
T Consensus       161 ~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         161 LEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999998654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=6.7e-21  Score=154.09  Aligned_cols=159  Identities=12%  Similarity=0.057  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----cccc---ccccCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVP---IACKDAV  173 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----~~~~---~~~~~ad  173 (284)
                      .|+++|.+|||||||+|+|++.... ....+.+........ .......+.+|||+|.....    .+..   ..+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999987765 333333222222222 22233457799999965421    1211   3467899


Q ss_pred             EEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023316          174 AILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  251 (284)
Q Consensus       174 ~iilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~  251 (284)
                      ++++++|.....  ++.....|+..+.......|.|+|+||+|+.   .   .. ..++..+.....+.+++++||++|.
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~---~---~~-~~~~~~~~~~~~~~~~~~iSA~tg~  154 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL---E---EE-AVKALADALAREGLAVLPVSALTGA  154 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS---C---HH-HHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhh---h---HH-HHHHHHHHHHhcCCeEEEEEcCCCC
Confidence            999999986542  3333334444332222234668999999962   1   11 2334455556678999999999999


Q ss_pred             CHHHHHHHHHHHHhCCc
Q 023316          252 NVNKIFKFIMAKLFNLP  268 (284)
Q Consensus       252 ~v~~lf~~l~~~i~~~~  268 (284)
                      ||+++++.|...+-..+
T Consensus       155 gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         155 GLPALKEALHALVRSTP  171 (180)
T ss_dssp             THHHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHHhhcC
Confidence            99999999988886543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=2.6e-20  Score=149.35  Aligned_cols=158  Identities=19%  Similarity=0.163  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---------ccccccc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIACK  170 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---------~~~~~~~  170 (284)
                      .|+|+|.+|||||||+++|++....  ...+.+........+...+  ..+.+||++|......         ....++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999999987654  3334333333333444444  5578999999654321         2223467


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  250 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~  250 (284)
                      .+|+++++.|.+....... ..|++.++..  ..|.|+|+||+|+.    .   ....+...++.+....+++++||++|
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~--~~pviiv~NK~Dl~----~---~~~~~~~~~~~~~~~~~~i~iSAk~g  149 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS--TVDTILVANKAENL----R---EFEREVKPELYSLGFGEPIPVSAEHN  149 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH--TCCEEEEEESCCSH----H---HHHHHTHHHHGGGSSCSCEECBTTTT
T ss_pred             cCcEEEEeecccccccccc-cccccccccc--cccccccchhhhhh----h---hhhhHHHHHHHhcCCCCeEEEecCCC
Confidence            9999999999877655433 4556666554  34568999999961    1   11122223333334457899999999


Q ss_pred             cCHHHHHHHHHHHHhCCcccc
Q 023316          251 INVNKIFKFIMAKLFNLPWTV  271 (284)
Q Consensus       251 ~~v~~lf~~l~~~i~~~~~~~  271 (284)
                      .|+++++++|.+.+.++....
T Consensus       150 ~gid~L~~~i~~~l~e~~~~~  170 (171)
T d1mkya1         150 INLDTMLETIIKKLEEKGLDL  170 (171)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHhCCCCCCCC
Confidence            999999999999887665443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=1.7e-20  Score=148.41  Aligned_cols=148  Identities=15%  Similarity=0.208  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-c--------cccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-D--------HVPIAC  169 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-~--------~~~~~~  169 (284)
                      +||+++|.+|||||||+|+|++.+..  ...+.+........+..++.  .+.+|||+|..... .        .....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCe--eEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999987654  44444444444555666664  47799999954321 1        111235


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  249 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~  249 (284)
                      ..+|++++|+|.+++.+.+...-+.     .....++++++||.|+.+.   ..    .++... ....+.+++++||++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-----~~~~~~~i~~~~k~d~~~~---~~----~~~~~~-~~~~~~~~~~vSA~~  145 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-----RIKNKRYLVVINKVDVVEK---IN----EEEIKN-KLGTDRHMVKISALK  145 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-----HHTTSSEEEEEEECSSCCC---CC----HHHHHH-HHTCSTTEEEEEGGG
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-----hcccccceeeeeeccccch---hh----hHHHHH-HhCCCCcEEEEECCC
Confidence            7899999999999987765433222     1234566899999996321   11    122211 122457899999999


Q ss_pred             CcCHHHHHHHHHHH
Q 023316          250 NINVNKIFKFIMAK  263 (284)
Q Consensus       250 ~~~v~~lf~~l~~~  263 (284)
                      |+|+++++++|.++
T Consensus       146 g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         146 GEGLEKLEESIYRE  159 (160)
T ss_dssp             TCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=4.3e-20  Score=152.59  Aligned_cols=114  Identities=12%  Similarity=0.110  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-ccccccccCCcEEEEEEe
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILFMFD  180 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-~~~~~~~~~ad~iilv~d  180 (284)
                      +|+++|++|||||||+++|+++++...++|++.++....+. ++..+.+.+||++|++.++ ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            69999999999999999999999887677777766543322 4556778999999999885 567788899999999999


Q ss_pred             CCChhhH-HHHHHHHHHHHh-H--CCCCce-EEEEeCCCCC
Q 023316          181 LTSRCTL-NSIVGWYSEARK-W--NQTAIP-ILIGTKFDDF  216 (284)
Q Consensus       181 ~~~~~s~-~~~~~~~~~l~~-~--~~~~~~-Ilv~nK~Dl~  216 (284)
                      +++..++ .+...|+..+.. .  ....+| +||+||+||.
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~  121 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA  121 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccC
Confidence            9997764 455555544432 2  234455 6889999974

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.81  E-value=5.2e-20  Score=148.98  Aligned_cols=163  Identities=13%  Similarity=0.141  Sum_probs=105.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc--cc----c--eeeeeEEEEECCeEEEEEEEeCCCCcCCccccccc
Q 023316           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ--MA----G--LNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA  168 (284)
Q Consensus        97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~--t~----~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~  168 (284)
                      +...++|+++|.+|+|||||+|+|++........  +.    |  .+.....+..++  ..+.++|++|+..|.......
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~   79 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   79 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhh
Confidence            3457899999999999999999998754321111  11    1  122222333344  446799999999998888888


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc----CCcEEE
Q 023316          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATLFF  244 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~  244 (284)
                      +..+|++++++|..+....+...-| ..+...  ..|+|+|.||+|+   ...+......+..+.+.+..    +.++++
T Consensus        80 l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~~--~~p~iiv~NKiD~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  153 (179)
T d1wb1a4          80 ADIIDLALIVVDAKEGPKTQTGEHM-LILDHF--NIPIIVVITKSDN---AGTEEIKRTEMIMKSILQSTHNLKNSSIIP  153 (179)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCBCEEEECTTS---SCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhhccccccccccccccchhhhhhh-hhhhhc--CCcceeccccccc---cCHHHHHHHHHHHHHHHHHhhcCCCCeEEE
Confidence            9999999999999876544333222 223222  3456899999996   22111111122233333322    368999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCC
Q 023316          245 SSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      +||++|.|++++++.|...+-+.
T Consensus       154 iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         154 ISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEccCCcCHHHHHHHHHhcCCcc
Confidence            99999999999999999877543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=3.3e-19  Score=149.10  Aligned_cols=161  Identities=19%  Similarity=0.188  Sum_probs=110.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~  179 (284)
                      .+||+++|++|||||||+++|..+++   .||+|.+.  ..+.+++  +.+++||++|++.++..|..++.+++++++++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~   78 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV   78 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccceEEEE
Confidence            58999999999999999999976654   47888654  4555665  66889999999999999999999999999999


Q ss_pred             eCCChhh-----------HHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCC---C---------CC-------------
Q 023316          180 DLTSRCT-----------LNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRL---P---------PD-------------  222 (284)
Q Consensus       180 d~~~~~s-----------~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~---~---------~~-------------  222 (284)
                      |+++.+.           .+....|...+........| +|+|||+||.+..   +         +.             
T Consensus        79 d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~  158 (221)
T d1azta2          79 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEP  158 (221)
T ss_dssp             ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCT
T ss_pred             EccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccC
Confidence            9986432           22333444444333333444 7999999963210   0         00             


Q ss_pred             cccchHHHHHHH-----HHHc--------CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316          223 LQWTIATQARAY-----AKAM--------KATLFFSSATHNINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       223 ~~~~~~~~~~~~-----a~~~--------~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~  267 (284)
                      .......++..+     .+..        .+-.++|||.++.||+.+|..+...|++.
T Consensus       159 g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         159 GEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence            000012223222     1111        13346799999999999999988777643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=4.5e-19  Score=143.65  Aligned_cols=155  Identities=14%  Similarity=0.226  Sum_probs=98.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc------------c
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------------V  165 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~------------~  165 (284)
                      .+||+++|.+|||||||+|+|++....  ..++.+........+.+++..  +.++|++|.......            .
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCce--eeeeccCCccccccccccccccchhHHH
Confidence            589999999999999999999987753  444444434444456677755  568999997653222            2


Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH-HHH---c-CC
Q 023316          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-AKA---M-KA  240 (284)
Q Consensus       166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-a~~---~-~~  240 (284)
                      ..+++.+|++++|+|++....- ....|+..+...  ..+.|+|+||+|+.   ... +.. .++..+. .+.   . .+
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~~--~~~~i~v~nK~D~~---~~~-~~~-~~~~~~~~~~~~~~~~~~  157 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITR-QDQRMAGLMERR--GRASVVVFNKWDLV---VHR-EKR-YDEFTKLFREKLYFIDYS  157 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT--TCEEEEEEECGGGS---TTG-GGC-HHHHHHHHHHHCGGGTTS
T ss_pred             HHHHhcCCEEEEeecccccchh-hHHHHHHHHHHc--CCceeeeccchhhh---cch-hhh-hhhHHHHHHHHhcccCCC
Confidence            2245789999999999765442 223444444442  34558999999962   222 211 2222222 222   2 35


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          241 TLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       241 ~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +++++||++|.|+++++++|...+
T Consensus       158 ~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         158 PLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHH
Confidence            899999999999999999996654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=4e-19  Score=144.02  Aligned_cols=157  Identities=16%  Similarity=0.195  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcC----Cccccccc---ccCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSR----SFDHVPIA---CKDA  172 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~----~~~~~~~~---~~~a  172 (284)
                      +|+|+|.+|||||||+|+|++.+.. ..++.++.+.......+ ++.  .+.+|||+|..+    ...+...+   +..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            6899999999999999999987755 44443333322333333 343  367999999633    22222222   4568


Q ss_pred             cEEEEEEeCCChhhHHHHH---HHHHHHHhHC---CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEE
Q 023316          173 VAILFMFDLTSRCTLNSIV---GWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFF  244 (284)
Q Consensus       173 d~iilv~d~~~~~s~~~~~---~~~~~l~~~~---~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~  244 (284)
                      +.++++.+....+......   .+........   ...|.|+|+||+|+    .+.     .+..+.+.+..  +.+++.
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl----~~~-----~~~~~~~~~~~~~~~~v~~  151 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM----PEA-----AENLEAFKEKLTDDYPVFP  151 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS----TTH-----HHHHHHHHHHCCSCCCBCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccch----HhH-----HHHHHHHHHHhccCCcEEE
Confidence            8888888766543322222   2212222211   13445899999996    221     22233344443  678999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316          245 SSATHNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       245 ~Sa~~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      +||++|.|++++++.+...+.+.++
T Consensus       152 iSA~~g~Gi~~L~~~i~~~L~~~p~  176 (185)
T d1lnza2         152 ISAVTREGLRELLFEVANQLENTPE  176 (185)
T ss_dssp             CSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             EECCCCCCHHHHHHHHHHhhhhCCC
Confidence            9999999999999999998866543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=4.5e-18  Score=137.21  Aligned_cols=148  Identities=14%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc---------------ccc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------------DHV  165 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~---------------~~~  165 (284)
                      .|+++|.+|||||||+|++++.+.. +.++.++.+.  ..+...+    +.+|||+|.....               ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999998766 5555343332  2333333    4689999963221               112


Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHH----------HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH
Q 023316          166 PIACKDAVAILFMFDLTSRCTLNSIV----------GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA  235 (284)
Q Consensus       166 ~~~~~~ad~iilv~d~~~~~s~~~~~----------~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a  235 (284)
                      ...++.+|++++|+|.+.........          ..++.+.+.  ..|.|+|+||+|+   +.+ .    ......+.
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~---~~~-~----~~~~~~~~  145 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDK---IKN-V----QEVINFLA  145 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGG---CSC-H----HHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeeh---hhh-H----HHHHHHHH
Confidence            23457899999999987654322211          223333322  3455899999995   221 1    11222222


Q ss_pred             HHcC-------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          236 KAMK-------ATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       236 ~~~~-------~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      +..+       ..++++||++|.|++++++.+.+.+.
T Consensus       146 ~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         146 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence            3222       34788999999999999999988774

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=1.8e-17  Score=138.87  Aligned_cols=159  Identities=12%  Similarity=0.100  Sum_probs=98.0

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEE----------------EEECCeEEEEEEEeCCCCcCCcccc
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKT----------------LMVQGARIAFSIWDVGGDSRSFDHV  165 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~----------------~~~~~~~~~l~l~Dt~G~e~~~~~~  165 (284)
                      |+++|.+++|||||++++++.... ....++........                ..++.....+.++||+|++.|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            999999999999999999875322 11111110000000                1112223457799999999999888


Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc---------------hHHH
Q 023316          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT---------------IATQ  230 (284)
Q Consensus       166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~---------------~~~~  230 (284)
                      ...+..+|++|+|+|+.+.-.-+... .+..+...  +.|+|++.||+|+...-.......               ..+.
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  164 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQE-ALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTK  164 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHH-HHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchhH-HHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHH
Confidence            88899999999999998765444332 33333332  446689999999742211110000               0011


Q ss_pred             H----HHHHHHc--------------CCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          231 A----RAYAKAM--------------KATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       231 ~----~~~a~~~--------------~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      .    ..+.+..              .++++.+||.+|.|++++++.+....
T Consensus       165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         165 VYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             HHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            1    1111110              14678899999999999999887765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=1.3e-16  Score=130.00  Aligned_cols=150  Identities=18%  Similarity=0.203  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC---CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-------------c
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------------H  164 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-------------~  164 (284)
                      .+|+|+|.+|||||||+|+|++.+..   ...++...+..  ...+..   .+.+.|+.|......             .
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~--~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN--FYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEE--EEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecc--cccccc---cceEEEEEeeccccccccccchhhhHHhh
Confidence            48999999999999999999986643   22233322222  222222   133456655432111             1


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----cCC
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----MKA  240 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~----~~~  240 (284)
                      ....+..+++++++.|.+.+..- ....+++.+...  ..|.++|+||+|+   +++.   ...+....+.+.    ...
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~--~~piivv~NK~D~---~~~~---~~~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY--GIPVIVIATKADK---IPKG---KWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT--TCCEEEEEECGGG---SCGG---GHHHHHHHHHHHHTCCTTS
T ss_pred             hhccccchhhhhhhhhccccccc-cccccccccccc--cCcceechhhccc---cCHH---HHHHHHHHHHHHhcccCCC
Confidence            11234577999999999766442 223455555543  3455899999996   2222   112223333332    345


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          241 TLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       241 ~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      +++.+||++|.|+++++++|.+.+
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHh
Confidence            789999999999999999998776

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3.9e-16  Score=125.05  Aligned_cols=158  Identities=16%  Similarity=0.122  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC---------cccccccc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC  169 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~---------~~~~~~~~  169 (284)
                      -.|+++|.+|||||||+|+|++.+..  ....++...........+...  +..||++|....         ......+.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCce--eEeecCCCceecchhhhhhhhhhccccch
Confidence            45999999999999999999988755  333333333333333444433  457888886531         22233344


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023316          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSAT  248 (284)
Q Consensus       170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~  248 (284)
                      ..+++++++.|..+...  ....+...+.+  ...++++|.||+|+.   ..  ..........+...++ .+++++||+
T Consensus        84 ~~~~~~l~~~d~~~~~~--~~~~~~~~l~~--~~~~~i~v~~k~d~~---~~--~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTP--DDEMVLNKLRE--GKAPVILAVNKVDNV---QE--KADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             CCEEEEEEEEETTCCCH--HHHHHHHHHHS--SSSCEEEEEESTTTC---CC--HHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             hhcceeEEEEecCccch--hHHHHHHHhhh--ccCceeeeeeeeecc---ch--hhhhhhHhhhhhhhcCCCCEEEEeCc
Confidence            67788888888765432  22233333332  344668999999952   21  2222445556666665 589999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCcc
Q 023316          249 HNINVNKIFKFIMAKLFNLPW  269 (284)
Q Consensus       249 ~~~~v~~lf~~l~~~i~~~~~  269 (284)
                      +|.|++++++.+...+.+.++
T Consensus       155 ~g~gi~~L~~~i~~~lpe~~~  175 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHLPEATH  175 (179)
T ss_dssp             TTTTHHHHHHHHHTTCCBCCC
T ss_pred             CCCCHHHHHHHHHHhCCCCCC
Confidence            999999999999888766554

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.68  E-value=1.8e-16  Score=129.55  Aligned_cols=162  Identities=12%  Similarity=0.126  Sum_probs=104.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC--Cc--cc--ccceeeeeEEEEE-------------------CCeEEEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RS--LQ--MAGLNLINKTLMV-------------------QGARIAFSI  152 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~--~~--t~~~~~~~~~~~~-------------------~~~~~~l~l  152 (284)
                      ...++|+++|..++|||||++++++....  ..  ..  |....+.......                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            34789999999999999999999874322  11  11  1111111111110                   112355789


Q ss_pred             EeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cchHHHH
Q 023316          153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQA  231 (284)
Q Consensus       153 ~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~~~~~~  231 (284)
                      .||+|++.|.......+..+|++++|.|..+...-....+-+..+.... ..++|++.||+|+    .+..+ ....+..
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-~~~iiv~inK~D~----~d~~~~~~~~~~~  157 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-QKNIIIAQNKIEL----VDKEKALENYRQI  157 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGG----SCHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-Cccceeeeecccc----hhhHHHHHHHHHH
Confidence            9999999998877777889999999999987642222233333333322 2234788999996    22211 1223444


Q ss_pred             HHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          232 RAYAKAM---KATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       232 ~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      .++....   .++++++||++|+|++++++.+...+
T Consensus       158 ~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         158 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            5555444   36899999999999999999987754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=2e-16  Score=130.38  Aligned_cols=163  Identities=15%  Similarity=0.144  Sum_probs=99.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC---Cccc-ccceee--eeEEEEE------------------------CCeEE
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE---RSLQ-MAGLNL--INKTLMV------------------------QGARI  148 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~~~-t~~~~~--~~~~~~~------------------------~~~~~  148 (284)
                      ..++|+++|..++|||||+++|++..-.   .... ....+.  ....+..                        .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            4689999999999999999999863221   0000 000000  0000000                        01123


Q ss_pred             EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  228 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~  228 (284)
                      .+.+.||+|+..|....-..+..+|++|+|.|..+.-.-...+.-+..+... ...+.|++.||+|+.   .........
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i~~iIV~vNK~Dl~---~~~~~~~~~  162 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVV---SKEEALSQY  162 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECGGGS---CHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CCceeeeccccCCCc---cchHHHHHH
Confidence            5789999999999877777788999999999998753111222222222222 222346789999962   222111223


Q ss_pred             HHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316          229 TQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF  265 (284)
Q Consensus       229 ~~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~  265 (284)
                      .+...+....   +++++.+||++|.|++++++.+...+.
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            3334444433   368999999999999999999887653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.61  E-value=8.2e-16  Score=125.71  Aligned_cols=160  Identities=11%  Similarity=0.092  Sum_probs=106.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC-----C--C--------CCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN-----E--Q--------ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~-----~--~--------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~  164 (284)
                      .++|+++|..++|||||++++++.     .  +        .......|.+.....+.+......+.+.||+|++.|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            689999999999999999999741     0  0        001112244444444444444456779999999999877


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cchHHHHHHHHHHcC----
Q 023316          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMK----  239 (284)
Q Consensus       165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a~~~~----  239 (284)
                      ....+..+|++|+|+|+.+...-+.. +.+..+... ...+.|++.||+|+   .+++.. ..+..+.+.+...++    
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~-~~~~iIv~iNK~D~---~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI-GVEHVVVYVNKADA---VQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT-TCCCEEEEEECGGG---CSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHh-cCCcEEEEEecccc---cccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            77778999999999999876543332 222333322 22344678999996   222211 223456666666554    


Q ss_pred             -CcEEEEcCCCC----------cCHHHHHHHHHHHH
Q 023316          240 -ATLFFSSATHN----------INVNKIFKFIMAKL  264 (284)
Q Consensus       240 -~~~~~~Sa~~~----------~~v~~lf~~l~~~i  264 (284)
                       ++++.+||++|          .|+.++++.+...+
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence             57999999998          58899988876543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=7.7e-16  Score=126.26  Aligned_cols=112  Identities=16%  Similarity=0.139  Sum_probs=78.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccc----cCCcEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC----KDAVAI  175 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~----~~ad~i  175 (284)
                      +..|+|+|++|||||||+|+|+++++.   ++++.+.....+..++  ..+.+|||+|++.+...+..++    ..++.+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~---~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR---PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC---CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            458999999999999999999998764   3344343333333344  4467999999998776655543    456888


Q ss_pred             EEEEeCC-ChhhHHHHHHHHHHH----HhHCCCCce-EEEEeCCCCC
Q 023316          176 LFMFDLT-SRCTLNSIVGWYSEA----RKWNQTAIP-ILIGTKFDDF  216 (284)
Q Consensus       176 ilv~d~~-~~~s~~~~~~~~~~l----~~~~~~~~~-Ilv~nK~Dl~  216 (284)
                      ++++|.. +..+++++..|+..+    .......+| ++|+||+|+.
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~  124 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  124 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccc
Confidence            8888865 466777777665443    344444555 7899999973

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=8.5e-15  Score=117.35  Aligned_cols=160  Identities=13%  Similarity=0.068  Sum_probs=81.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc-------c-
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------I-  167 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~-------~-  167 (284)
                      ...+||+++|.+|||||||+|++.+.+.. .... ++............+. ..+..++..+.........       . 
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK-RLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE-EEEECCCCC------CCHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceeccccc-ceeeeecccccchhhhhhhhhhhhhhhh
Confidence            34789999999999999999999988765 2222 2211111122222332 2222333332222111111       1 


Q ss_pred             --cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc--CCcEE
Q 023316          168 --ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLF  243 (284)
Q Consensus       168 --~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~--~~~~~  243 (284)
                        .....+.++.+.+......... ..++..+...  ..+.++++||+|+   ..........+..++.....  ..+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~v~~k~D~---~~~~~~~~~~~~~~~~l~~~~~~~~~i  166 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS--NIAVLVLLTKADK---LASGARKAQLNMVREAVLAFNGDVQVE  166 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT--TCCEEEEEECGGG---SCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             hhhhhheeEEEEeecccccchhHH-HHHHHHhhhc--cccccchhhhhhc---cCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence              1223445555566655443322 3344444332  3455789999996   22221111223333333333  34788


Q ss_pred             EEcCCCCcCHHHHHHHHHHHH
Q 023316          244 FSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       244 ~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      .+||++|.|++++++.|...+
T Consensus       167 ~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         167 TFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999886543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.50  E-value=1.9e-13  Score=113.45  Aligned_cols=153  Identities=12%  Similarity=0.059  Sum_probs=95.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCC--CCC------------------------------ccc--ccceeeeeEEEEE
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QER------------------------------SLQ--MAGLNLINKTLMV  143 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~~--~~~------------------------------~~~--t~~~~~~~~~~~~  143 (284)
                      ...++|+++|..++|||||+.+|+...  ...                              ...  ..+.+.....+..
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            457899999999999999999996311  000                              000  1112222222233


Q ss_pred             CCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316          144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  223 (284)
Q Consensus       144 ~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~  223 (284)
                      .+  ..+.+.|++|++.|..........+|++|+|.|+.....-+....|. .+.. ..-..+|++.||+|+.+. ++..
T Consensus        87 ~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~-~~~~-~gv~~iiv~vNK~D~~~~-~~~~  161 (222)
T d1zunb3          87 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IASL-LGIKHIVVAINKMDLNGF-DERV  161 (222)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHH-TTCCEEEEEEECTTTTTS-CHHH
T ss_pred             cc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH-HHHH-cCCCEEEEEEEccccccc-ccee
Confidence            33  45779999999999877777789999999999998765433333222 2222 221234789999996311 1111


Q ss_pred             ccchHHHHHHHHHHcCC-----cEEEEcCCCCcCHHH
Q 023316          224 QWTIATQARAYAKAMKA-----TLFFSSATHNINVNK  255 (284)
Q Consensus       224 ~~~~~~~~~~~a~~~~~-----~~~~~Sa~~~~~v~~  255 (284)
                      .....++...+.+..+.     +++.+||.+|+|+.+
T Consensus       162 ~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         162 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            11224556667776643     678899999999843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=1.9e-14  Score=118.22  Aligned_cols=143  Identities=11%  Similarity=0.061  Sum_probs=92.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC--------CCC-----Cccc-----ccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN--------EQE-----RSLQ-----MAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~--------~~~-----~~~~-----t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~  161 (284)
                      .++|+++|..++|||||+++|+..        +..     ...+     .+..+.....+..++.  .+.+.||+|++.|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~--~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR--HYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSC--EEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCe--EEEEEeCCCchhh
Confidence            689999999999999999999631        000     0000     2233333344455554  4668999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023316          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  239 (284)
Q Consensus       162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~  239 (284)
                      .......++.+|++|+|+|+.+....+..+.|.. +...  ..+. |++.||+|+.   +.+. .....++.+.+...++
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~~--gi~~iiv~iNK~D~~---~~~~~~~~~~~~i~~~l~~~~  154 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQV--GVPYIVVFMNKVDMV---DDPELLDLVEMEVRDLLNQYE  154 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHHT--TCCCEEEEEECGGGC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHHc--CCCeEEEEEEecccC---CCHHHHHHHHHHHHHHHHhcC
Confidence            8877788899999999999988776666554433 3222  2344 5678999962   2221 1122455566555543


Q ss_pred             -----CcEEEEcCCCC
Q 023316          240 -----ATLFFSSATHN  250 (284)
Q Consensus       240 -----~~~~~~Sa~~~  250 (284)
                           ++++..||..+
T Consensus       155 ~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         155 FPGDEVPVIRGSALLA  170 (204)
T ss_dssp             SCTTTSCEEECCHHHH
T ss_pred             CCcccceeeeeechhh
Confidence                 56788887543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=1.5e-12  Score=109.60  Aligned_cols=157  Identities=11%  Similarity=0.046  Sum_probs=82.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCC--CC------------------------------CcccccceeeeeEEEEECCe
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNE--QE------------------------------RSLQMAGLNLINKTLMVQGA  146 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~--~~------------------------------~~~~t~~~~~~~~~~~~~~~  146 (284)
                      ..++|+++|...+|||||+.+|+...  ..                              ........+.....+..++ 
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc-
Confidence            46789999999999999999994211  00                              0000111111222222333 


Q ss_pred             EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCC
Q 023316          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT---LN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVRL  219 (284)
Q Consensus       147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s---~~---~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~  219 (284)
                       ..+.+.||+|+..|..........+|++|+|.|+....-   ++   ...+-+..+...  ..+ +|++.||+|+...-
T Consensus       102 -~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         102 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred             -ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCccc
Confidence             457799999999998888888899999999999976421   10   111112222221  233 36889999963111


Q ss_pred             -CCCcccchHHHHHHHHHHc-------CCcEEEEcCCCCcCHHHHHHH
Q 023316          220 -PPDLQWTIATQARAYAKAM-------KATLFFSSATHNINVNKIFKF  259 (284)
Q Consensus       220 -~~~~~~~~~~~~~~~a~~~-------~~~~~~~Sa~~~~~v~~lf~~  259 (284)
                       .+.+-..+.++...+.++.       .++++.+||++|+||.++++.
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence             1111112234444444443       257899999999999776543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.30  E-value=3.6e-12  Score=105.82  Aligned_cols=155  Identities=14%  Similarity=0.108  Sum_probs=91.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCC--CC----------------------------CcccccceeeeeEEEEECCeEEE
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNE--QE----------------------------RSLQMAGLNLINKTLMVQGARIA  149 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~--~~----------------------------~~~~t~~~~~~~~~~~~~~~~~~  149 (284)
                      .++|+++|..++|||||+.+|+...  ..                            ......|................
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            6899999999999999999885310  00                            00001111211122222223356


Q ss_pred             EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHH------HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316          150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS------IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  223 (284)
Q Consensus       150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~------~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~  223 (284)
                      +.+.||+|++.|........+-+|++|+|+|+.+...-+.      ..+-+..+ +.....+.|++.||+|+...-....
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~~~~~~iIv~iNK~D~~~~~~~~~  161 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTMGLDQLIVAVNKMDLTEPPYDEK  161 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HHhCCCceEEEEEcccCCCccccHH
Confidence            7899999999999888888999999999999987531111      11111111 1122334578999999731111111


Q ss_pred             -ccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023316          224 -QWTIATQARAYAKAMK-----ATLFFSSATHNINVNK  255 (284)
Q Consensus       224 -~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~  255 (284)
                       -.....+...+...++     ++++.+||.+|.||.+
T Consensus       162 ~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         162 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence             1112344555555554     4688999999999854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.4e-11  Score=110.86  Aligned_cols=162  Identities=12%  Similarity=0.132  Sum_probs=90.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccce---eeeeEEEEECCeEEEEEEEeCCCCcCCcccc-----ccccc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL---NLINKTLMVQGARIAFSIWDVGGDSRSFDHV-----PIACK  170 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~---~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~-----~~~~~  170 (284)
                      .++|+|+|.+|||||||+|.+.|.... .....+|.   ......+...+ .-.+.+|||+|........     ...+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            589999999999999999999986543 11112111   11112222221 1235699999986543222     22356


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCC-----CCCCC-cccchHHHH----HHHHHHcCC
Q 023316          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV-----RLPPD-LQWTIATQA----RAYAKAMKA  240 (284)
Q Consensus       171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~-----~~~~~-~~~~~~~~~----~~~a~~~~~  240 (284)
                      .+|.+|++.|..-  +-++ ..++..+.+.  ..+.++|.||+|...     ..+.. ......++.    ....+..++
T Consensus       135 ~~d~~l~~~~~~~--~~~d-~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~  209 (400)
T d1tq4a_         135 EYDFFIIISATRF--KKND-IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  209 (400)
T ss_dssp             GCSEEEEEESSCC--CHHH-HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cceEEEEecCCCC--CHHH-HHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            7888888877432  2222 2344445443  346689999999310     00000 000111222    222233333


Q ss_pred             ---cEEEEcCCC--CcCHHHHHHHHHHHHhCC
Q 023316          241 ---TLFFSSATH--NINVNKIFKFIMAKLFNL  267 (284)
Q Consensus       241 ---~~~~~Sa~~--~~~v~~lf~~l~~~i~~~  267 (284)
                         ++|.+|..+  ..++.++.+.+.+.+.+.
T Consensus       210 ~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         210 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence               577788765  348899888887776543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=9.3e-12  Score=104.26  Aligned_cols=150  Identities=10%  Similarity=0.036  Sum_probs=96.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC--C--------------------CC----------CcccccceeeeeEEEEECC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN--E--------------------QE----------RSLQMAGLNLINKTLMVQG  145 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~--------------------~~----------~~~~t~~~~~~~~~~~~~~  145 (284)
                      ...++|+++|...+|||||+.+++..  .                    +.          +....++.+.....+..++
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            34689999999999999999998521  0                    00          0001223344444555555


Q ss_pred             eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhHCCCCce-EEEEeCCCCCC
Q 023316          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT-------LNSIVGWYSEARKWNQTAIP-ILIGTKFDDFV  217 (284)
Q Consensus       146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s-------~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~  217 (284)
                        ..+.+.||+|+..|..........+|++|+|.|.+...-       -+....|+ .++.  -..+. |++.||+|+. 
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~--~gv~~iiv~iNKmD~~-  157 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT--LGVRQLIVAVNKMDSV-  157 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH--TTCCEEEEEEECGGGG-
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHH--cCCCeEEEEEECCCCC-
Confidence              457799999999998877778899999999999976421       11222232 1111  13344 6789999962 


Q ss_pred             CCCCCccc--chHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023316          218 RLPPDLQW--TIATQARAYAKAMK-----ATLFFSSATHNINVNK  255 (284)
Q Consensus       218 ~~~~~~~~--~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~  255 (284)
                        .....+  .+.++...+....+     ++++.+||.+|.|+-+
T Consensus       158 --~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         158 --KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             --CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence              212111  22455666666654     5689999999998744

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.24  E-value=3.2e-11  Score=102.34  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC--CC--Cc---c------------cccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE--QE--RS---L------------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~--~~--~~---~------------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      +|+++|..++|||||+.+++...  ..  ..   -            .....+.....+..++..  +.++||+|+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~--~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHR--VFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEE--EEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccc--eeEEccCchhhhh
Confidence            69999999999999999995321  00  00   0            011222333455566654  6799999999999


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      ......++-+|++|+|.|..+.-.-+...-|... .++  ..|.+++.||+|.
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~-~~~--~~p~~i~iNk~D~  131 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVA-ERL--GLPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHT--TCCEEEEEECGGG
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHHHhh-hhc--ccccccccccccc
Confidence            9888899999999999999988776666666433 322  3455899999995

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.22  E-value=7.8e-11  Score=99.62  Aligned_cols=114  Identities=18%  Similarity=0.038  Sum_probs=72.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc-------c--
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------I--  167 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~-------~--  167 (284)
                      ..++|+|+|.+|+|||||+|.+++.+..  +..+.++.+........+|..  +.++||+|.........       .  
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~--i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEE--EEEEeeecccCCcchHHHHHHHHHHHH
Confidence            4799999999999999999999997744  333333334444555667754  67999999754321111       1  


Q ss_pred             cccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCC---CCceEEEEeCCCC
Q 023316          168 ACKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQ---TAIPILIGTKFDD  215 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl  215 (284)
                      .....+++++|.+++.. -+-++ ...+..+.+...   -...|+|.||+|+
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~~~~~~~ivv~t~~D~  159 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQF  159 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcchhhhhCEEEEEECccc
Confidence            12456889999887653 22222 223333333222   2345899999996

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=3.9e-10  Score=95.83  Aligned_cols=109  Identities=17%  Similarity=0.158  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC--CC-----C-----------c-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE--QE-----R-----------S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~--~~-----~-----------~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      +|+++|..++|||||+.+++...  ..     .           . ...+.+......+.+++.  .+.+.||+|...|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~--~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDH--RINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTE--EEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCe--EEEEecCCchhhhH
Confidence            69999999999999999995311  00     0           0 001122233344555664  47799999999999


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      ......++-+|++|+|+|..+.-.-+...-|.. +.++  +.|.|++.||+|.
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~~~--~lP~i~fINKmDr  135 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDK  135 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HHTT--TCCEEEEEECTTS
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HHHc--CCCEEEEEecccc
Confidence            999999999999999999998876666666643 3322  4455899999994

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=2.6e-10  Score=99.83  Aligned_cols=113  Identities=13%  Similarity=0.156  Sum_probs=79.3

Q ss_pred             ee-EEEEEcCCCCChHHHHHHHhcCC------------CCC-----cccccceeeeeEEEEE--------------CCeE
Q 023316          100 SL-KISLLGDCQIGKTSFVVKYVGNE------------QER-----SLQMAGLNLINKTLMV--------------QGAR  147 (284)
Q Consensus       100 ~~-KI~llG~~~vGKSsLl~~l~~~~------------~~~-----~~~t~~~~~~~~~~~~--------------~~~~  147 (284)
                      .+ +|+++|..++|||||+.+|+...            +..     ....+........+..              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            35 59999999999999999996210            000     0001111111122211              3456


Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  215 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl  215 (284)
                      +.+.+.||+|+..|.......++-+|++|+|+|+...-..+...-|......   ..|+|++.||+|.
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~---~~p~i~viNKiDr  160 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE---RIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCEEEEEEECHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc---CCCeEEEEECccc
Confidence            7899999999999999999999999999999999988777766666554432   4566899999993

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.05  E-value=6.8e-10  Score=94.74  Aligned_cols=82  Identities=12%  Similarity=0.120  Sum_probs=57.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCe------------E---EEEEEEeCCCCcCC--
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA------------R---IAFSIWDVGGDSRS--  161 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~------------~---~~l~l~Dt~G~e~~--  161 (284)
                      .+||-+||.||||||||++++++.+.. ..||.++.+.....+.+.+.            +   ..+++.|++|.-.-  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999998877 77884444444445555432            1   25789999997552  


Q ss_pred             --ccccccc---ccCCcEEEEEEeC
Q 023316          162 --FDHVPIA---CKDAVAILFMFDL  181 (284)
Q Consensus       162 --~~~~~~~---~~~ad~iilv~d~  181 (284)
                        ..+...|   ++.+|++++|.|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence              3466665   4799999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.88  E-value=3e-10  Score=94.17  Aligned_cols=111  Identities=10%  Similarity=0.009  Sum_probs=60.8

Q ss_pred             EEEEEeCCCCcCCcccccc---c--ccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          149 AFSIWDVGGDSRSFDHVPI---A--CKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       149 ~l~l~Dt~G~e~~~~~~~~---~--~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      .+.+.|++|+..+......   .  ....+.++++.|...   +.++.........+.. .-..+.++|.||+|+   .+
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ivvinK~D~---~~  171 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKVDL---LS  171 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCGGG---CC
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH-HhCCCceeeeecccc---cc
Confidence            3678899999875322111   1  124568889998753   3333222211111111 113345899999996   22


Q ss_pred             CCcccchH------------------------HHHHHHHHH--cCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316          221 PDLQWTIA------------------------TQARAYAKA--MKATLFFSSATHNINVNKIFKFIMAK  263 (284)
Q Consensus       221 ~~~~~~~~------------------------~~~~~~a~~--~~~~~~~~Sa~~~~~v~~lf~~l~~~  263 (284)
                      .+......                        .......+.  ..++++.+||++|+|+++++..+.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            21110000                        000011111  24689999999999999999887764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.76  E-value=2.2e-08  Score=85.86  Aligned_cols=84  Identities=14%  Similarity=0.207  Sum_probs=62.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCC-C-CcccccceeeeeEEEEECCe---------------EEEEEEEeCCCCcC--
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR--  160 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~e~--  160 (284)
                      .+||.++|.||||||||++.+++... . ..||.++.+-....+.+.+.               ...+++.|++|...  
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            48999999999999999999998754 3 77885555544455665542               24688999998654  


Q ss_pred             --Cccccccc---ccCCcEEEEEEeCCC
Q 023316          161 --SFDHVPIA---CKDAVAILFMFDLTS  183 (284)
Q Consensus       161 --~~~~~~~~---~~~ad~iilv~d~~~  183 (284)
                        -..+...|   ++.+|++++|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence              33455555   479999999999855

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.75  E-value=2.2e-08  Score=86.83  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=58.0

Q ss_pred             EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  227 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~  227 (284)
                      +.+.+..|.|.-....   ....-+|.+++|......+..+..+   .-+.+.    .-|+|.||+|+    ++... ..
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k---~gilE~----aDi~vvNKaD~----~~~~~-~~  208 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK---KGIFEL----ADMIAVNKADD----GDGER-RA  208 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC---TTHHHH----CSEEEEECCST----TCCHH-HH
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhh---hhHhhh----hheeeEecccc----ccchH-HH
Confidence            3455677776544221   1335689999999988766443322   111111    23999999995    32211 11


Q ss_pred             HHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          228 ATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       228 ~~~~~~~a~~----------~~~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      ......+...          ...+++.+||++|+|++++++++.+..
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         209 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            1111122221          345799999999999999999997654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.74  E-value=2.3e-08  Score=86.55  Aligned_cols=83  Identities=18%  Similarity=0.168  Sum_probs=44.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEE--E--------------------CCeEEEEEEEeCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLM--V--------------------QGARIAFSIWDVGG  157 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~--~--------------------~~~~~~l~l~Dt~G  157 (284)
                      +||.++|.||||||||+|.+++.+.. .+||.++.+-......  .                    ......++++|++|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999998877 7788333222111110  0                    11235689999999


Q ss_pred             CcCC----ccccccc---ccCCcEEEEEEeCCC
Q 023316          158 DSRS----FDHVPIA---CKDAVAILFMFDLTS  183 (284)
Q Consensus       158 ~e~~----~~~~~~~---~~~ad~iilv~d~~~  183 (284)
                      .-..    ..+...+   ++.+|++++|.|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            6442    2333333   468999999999853

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.5e-08  Score=87.99  Aligned_cols=86  Identities=9%  Similarity=0.027  Sum_probs=48.4

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc-hHHHHHHHHH-------HcC
Q 023316          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT-IATQARAYAK-------AMK  239 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~a~-------~~~  239 (284)
                      +...+|.+++|.+....+..+...   .-+.+.    .-|+|.||+|+    +...... ...+......       .+.
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k---~gi~e~----aDi~VvNKaD~----~~~~~~~~~~~~~~~al~~~~~~~~~w~  232 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIK---KGLMEV----ADLIVINKDDG----DNHTNVAIARHMYESALHILRRKYDEWQ  232 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCC---HHHHHH----CSEEEECCCCT----TCHHHHHHHHHHHHHHHHHSCCSBTTBC
T ss_pred             hhhccceEEEEecCCCchhhhhhc---hhhhcc----ccEEEEEeecc----cchHHHHHHHHHHHHHhhhcccCCCCCc
Confidence            456789999998765444332222   222221    22899999995    3221111 1122222222       123


Q ss_pred             CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316          240 ATLFFSSATHNINVNKIFKFIMAKL  264 (284)
Q Consensus       240 ~~~~~~Sa~~~~~v~~lf~~l~~~i  264 (284)
                      .+++.|||.+|+|++++++.|.+..
T Consensus       233 p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         233 PRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            4688899999999999999987644

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.70  E-value=9e-10  Score=93.74  Aligned_cols=152  Identities=14%  Similarity=0.123  Sum_probs=81.8

Q ss_pred             ChhhHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc---------cccccccCCCCCCC
Q 023316            1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV---------RYQKLTRRSSSESS   71 (284)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~---------~~~~~~~~~~~~~~   71 (284)
                      |||..+|+.+++.+.+..++.+|.|.-+..|...+-+.++-  .+.+++-++..-..         .|.......-+. +
T Consensus         2 m~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~--Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~i-s   78 (273)
T d1puja_           2 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN--KPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSI-N   78 (273)
T ss_dssp             TTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSS--SCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEEC-C
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcC--CCeEEEEECccCCchHHHHHHHHHHHhcCCcccee-e
Confidence            99999999999999999999999999999999888777652  22333333222100         011111111000 0


Q ss_pred             CCccccccccc----cc-ccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEEC
Q 023316           72 PAPDTMEAGLV----EL-SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQ  144 (284)
Q Consensus        72 ~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~  144 (284)
                      +..........    .. ................++|+|+|-||||||||+|++.+.+..  ...|.++.+..  .+..+
T Consensus        79 a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~~  156 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVG  156 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEET
T ss_pred             cccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEECC
Confidence            00000000000    00 000000001122334789999999999999999999998765  44554433322  23333


Q ss_pred             CeEEEEEEEeCCCCcC
Q 023316          145 GARIAFSIWDVGGDSR  160 (284)
Q Consensus       145 ~~~~~l~l~Dt~G~e~  160 (284)
                       ..  +.+.||+|.-.
T Consensus       157 -~~--~~l~DTPGi~~  169 (273)
T d1puja_         157 -KE--LELLDTPGILW  169 (273)
T ss_dssp             -TT--EEEEECCCCCC
T ss_pred             -CC--eEEecCCCccc
Confidence             22  66999999753

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=7.2e-07  Score=75.95  Aligned_cols=114  Identities=19%  Similarity=0.170  Sum_probs=68.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEE-------------------------------------
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKT-------------------------------------  140 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~-------------------------------------  140 (284)
                      ..+|+|+|+.++|||||+|.+++.++.  +..+++..-.....                                     
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            348999999999999999999998863  33343321100000                                     


Q ss_pred             -----------EEECC-eEEEEEEEeCCCCcCCc-------------ccccccccCCcE-EEEEEeCCChhhHHHHHHHH
Q 023316          141 -----------LMVQG-ARIAFSIWDVGGDSRSF-------------DHVPIACKDAVA-ILFMFDLTSRCTLNSIVGWY  194 (284)
Q Consensus       141 -----------~~~~~-~~~~l~l~Dt~G~e~~~-------------~~~~~~~~~ad~-iilv~d~~~~~s~~~~~~~~  194 (284)
                                 +.+.+ ....+.++|++|.....             .+...|+...+. +++|.+.+...+-+.+..|.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                       00000 01126799999975421             234456667765 55566666555555555665


Q ss_pred             HHHHhHCCCC-ceEEEEeCCCCC
Q 023316          195 SEARKWNQTA-IPILIGTKFDDF  216 (284)
Q Consensus       195 ~~l~~~~~~~-~~Ilv~nK~Dl~  216 (284)
                      +.+   .+.. ..++|.||+|+.
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~  205 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLM  205 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGS
T ss_pred             HHh---CcCCCceeeEEeccccc
Confidence            554   3333 447999999963

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.27  E-value=9.8e-07  Score=75.45  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE  126 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~  126 (284)
                      .+|+|+|+.++|||||+|.++|.++.
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            48999999999999999999998863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=1.8e-05  Score=64.28  Aligned_cols=58  Identities=14%  Similarity=0.064  Sum_probs=35.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--Cccc-cc--c--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MA--G--LNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t~--~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ..+++|.+|||||||+|++.++...  ...+ ..  |  .+.....+.+++..   .+.||+|...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            5689999999999999999876422  2111 11  1  12222344454322   388999987754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=1.4e-05  Score=65.27  Aligned_cols=86  Identities=9%  Similarity=0.086  Sum_probs=59.3

Q ss_pred             ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023316          169 CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA  247 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa  247 (284)
                      ..+.|.+++|+++.+++ ++..+.+++-....  ...+|+||.||+||   .++.......+...+.....|.+++.+||
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL---~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDL---IEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGG---CCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccc---cccHHHHHHHHHHHHHHhhccccceeeec
Confidence            46889999999988764 56667777665543  45677999999997   22221111122233444567999999999


Q ss_pred             CCCcCHHHHHHH
Q 023316          248 THNINVNKIFKF  259 (284)
Q Consensus       248 ~~~~~v~~lf~~  259 (284)
                      +++.|++++...
T Consensus        83 ~~~~gl~~L~~~   94 (231)
T d1t9ha2          83 KDQDSLADIIPH   94 (231)
T ss_dssp             HHHTTCTTTGGG
T ss_pred             CChhHHHHHHHh
Confidence            999998887554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.60  E-value=3.5e-05  Score=64.53  Aligned_cols=89  Identities=10%  Similarity=-0.018  Sum_probs=60.2

Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023316          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  245 (284)
Q Consensus       166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  245 (284)
                      ...++.+|++|+|.|+.++.+..+  ..++++   ....+.|+|.||+||   .+.   . ..++..++.+..+...+.+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~---~~~Kp~IlVlNK~DL---v~~---~-~~~~w~~~f~~~~~~~i~i   77 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDI---LKNKPRIMLLNKADK---ADA---A-VTQQWKEHFENQGIRSLSI   77 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHH---CSSSCEEEEEECGGG---SCH---H-HHHHHHHHHHTTTCCEEEC
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHH---HcCCCeEEEEECccC---Cch---H-HHHHHHHHHHhcCCcccee
Confidence            346889999999999988766432  222222   235566999999997   221   1 2233334445557889999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhC
Q 023316          246 SATHNINVNKIFKFIMAKLFN  266 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l~~~i~~  266 (284)
                      |+.++.++.++...+...+.+
T Consensus        78 sa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          78 NSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHH
T ss_pred             ecccCCCccccchhhhhhhhh
Confidence            999999988887777665543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.41  E-value=2.9e-05  Score=63.27  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=32.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCC--Cccc-c--cc--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~  162 (284)
                      ..+++|.+|||||||+|++.++...  ...+ .  .|  .+.....+..+|.    .+.||+|...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            5679999999999999999876422  1111 0  01  1111122334553    277999998764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.38  E-value=8.7e-05  Score=59.45  Aligned_cols=92  Identities=11%  Similarity=0.161  Sum_probs=54.6

Q ss_pred             EEEEEEeCCCCcCCccc----ccccc--------cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          148 IAFSIWDVGGDSRSFDH----VPIAC--------KDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~----~~~~~--------~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      ..+.+.||+|...+...    ...+.        ...+-.++|.|.+.. +....+...++.+      .+-=++.||.|
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~~lI~TKlD  162 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------GLTGVIVTKLD  162 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------CCSEEEEECTT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------CCceEEEeccC
Confidence            35679999997654321    11111        245678888888654 4444444444443      23358999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      -      ...   .-.+..++...+.|+.+++.  |++.+++
T Consensus       163 e------t~~---~G~~l~~~~~~~~Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         163 G------TAK---GGVLIPIVRTLKVPIKFVGV--GEGPDDL  193 (207)
T ss_dssp             S------SCC---CTTHHHHHHHHCCCEEEEEC--SSSTTCE
T ss_pred             C------CCC---ccHHHHHHHHHCCCEEEEeC--CCChHhC
Confidence            3      111   22355667778999877764  6665554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00016  Score=57.96  Aligned_cols=92  Identities=11%  Similarity=0.088  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCCcCCcc-----ccc--cccc-----CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          148 IAFSIWDVGGDSRSFD-----HVP--IACK-----DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-----~~~--~~~~-----~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      +.+.+.||+|......     +..  ...+     ..+-.++|.|.+.. +....+...++.+      .+-=++.||.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~~lIlTKlD  165 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------GLTGITLTKLD  165 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------CCCEEEEECCT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------CCceEEEeecC
Confidence            3567999999644321     111  1121     24678889987653 3344433433332      23359999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      -      . .+  .-.+...+...++|+.+++  +|++|+++
T Consensus       166 e------~-~~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         166 G------T-AK--GGVIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             T------C-TT--TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             C------C-CC--ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            2      1 11  3345666778899988887  57777664

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.34  E-value=0.00029  Score=56.89  Aligned_cols=83  Identities=11%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH--cCCcEEEE
Q 023316          169 CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA--MKATLFFS  245 (284)
Q Consensus       169 ~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~  245 (284)
                      ..+.|.+++|+++.+++ +..-+.+|+-.+...  +.+|+||.||+||   .+++    ..+....+...  .+.+.+.+
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL---~~~~----~~~~~~~~~~~~~~~~~v~~v   78 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDL---YDED----DLRKVRELEEIYSGLYPIVKT   78 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGG---CCHH----HHHHHHHHHHHHTTTSCEEEC
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCccc---CCHH----HHHHHHHhhcccccceeEEEe
Confidence            46889999999988764 456677777666543  5678999999997   2211    12223333332  34688999


Q ss_pred             cCCCCcCHHHHHHHH
Q 023316          246 SATHNINVNKIFKFI  260 (284)
Q Consensus       246 Sa~~~~~v~~lf~~l  260 (284)
                      ||+++.|++++...+
T Consensus        79 Sa~~~~g~~~L~~~l   93 (225)
T d1u0la2          79 SAKTGMGIEELKEYL   93 (225)
T ss_dssp             CTTTCTTHHHHHHHH
T ss_pred             ccccchhHhhHHHHh
Confidence            999999999987755

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.34  E-value=0.00011  Score=58.90  Aligned_cols=92  Identities=15%  Similarity=0.134  Sum_probs=55.5

Q ss_pred             EEEEEEeCCCCcCCccc----c--ccc--ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFDH----V--PIA--CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  218 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~----~--~~~--~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~  218 (284)
                      ..+.+.||+|...+...    .  ..+  .-..+-+++|.|.+... ..+.+...+..      ..+-=+|.||.|.   
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~------~~~~~lI~TKlDe---  165 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA------SKIGTIIITKMDG---  165 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH------CTTEEEEEECTTS---
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc------cCcceEEEecccC---
Confidence            35779999997554321    1  111  12456788888886543 33332222221      2233588999992   


Q ss_pred             CCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       219 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                         . .  ..-.+..++...++|+..+|  +|++|+++
T Consensus       166 ---t-~--~~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         166 ---T-A--KGGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             ---C-S--CHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             ---C-C--cccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence               1 1  24566777888899988877  48887664

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=0.00011  Score=59.07  Aligned_cols=92  Identities=16%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             EEEEEEeCCCCcCCccc-c---cccc---c-----CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          148 IAFSIWDVGGDSRSFDH-V---PIAC---K-----DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~-~---~~~~---~-----~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      +.+.|.||+|...+... .   ..+.   .     ..+-.++|.|.+.. +....+...++.      -.+-=+|.||.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~------~~~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEA------VNVTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHH------SCCCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccc------cCCceEEEeccc
Confidence            34779999996554321 1   1111   1     24678889988654 333333333322      123359999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316          215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  256 (284)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l  256 (284)
                      .      . .+  .-.+...+...+.|+.+++  +|++|+++
T Consensus       168 e------~-~~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         168 G------T-AK--GGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             G------C-SC--TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             C------C-Cc--ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            2      1 11  2345666777899988876  57777664

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.21  E-value=8.1e-05  Score=57.34  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999763

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.15  E-value=0.00048  Score=54.98  Aligned_cols=101  Identities=12%  Similarity=0.167  Sum_probs=55.1

Q ss_pred             EEEEEEeCCCCcCCccc-c---ccc--ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316          148 IAFSIWDVGGDSRSFDH-V---PIA--CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  220 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~-~---~~~--~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~  220 (284)
                      ..+.++||+|...+... .   ..+  .-..+-+++|.|.+... ..+.+..+++.+      .+-=++.||.|-     
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~------~~~~~I~TKlDe-----  161 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------GVTGLVLTKLDG-----  161 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT------CCCEEEEECGGG-----
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC------CCCeeEEeecCc-----
Confidence            35779999997664321 1   111  23567889999886553 333333333322      122499999992     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH----HHHHHHHHh
Q 023316          221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI----FKFIMAKLF  265 (284)
Q Consensus       221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l----f~~l~~~i~  265 (284)
                       . .+  .-.+..++...+.|+.+++.  |++.+++    -+.+++.++
T Consensus       162 -~-~~--~G~~l~~~~~~~~Pi~~i~~--Gq~pedl~~~~~~~l~~~lL  204 (207)
T d1ls1a2         162 -D-AR--GGAALSARHVTGKPIYFAGV--SEKPEGLEPFYPERLAGRIL  204 (207)
T ss_dssp             -C-SS--CHHHHHHHHHHCCCEEEEC--------CCEECCHHHHHHHHT
T ss_pred             -c-cc--chHHHHHHHHHCCCEEEEeC--CCChhhcccCCHHHHHHHHh
Confidence             1 11  34456677788999887753  5555544    244454443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00059  Score=54.99  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ++|-|.-|+|||||+++++...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            5688999999999999998753

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.00023  Score=54.53  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .-+|+|.|.+|+|||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999865

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.57  E-value=0.00049  Score=52.18  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..||+|.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998853

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00059  Score=51.56  Aligned_cols=20  Identities=20%  Similarity=0.320  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |.|.|.+|+|||||++++..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999975

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.50  E-value=0.0007  Score=51.43  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..++|+|.|.+||||||+.+.|..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0014  Score=54.54  Aligned_cols=59  Identities=14%  Similarity=0.218  Sum_probs=39.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCCC-C----c-ccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQE-R----S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~----~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~  160 (284)
                      .=|.++|+.++|||+|+|.+.+..+. .    . ..|.|+-.....+ .++....+.++||.|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            34669999999999999999987743 1    1 1255654333222 234555677999999764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.36  E-value=0.00088  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +||+|+|.||+||||+...+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.31  E-value=0.00086  Score=51.00  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             EEE-EEcCCCCChHHHHHHHhc
Q 023316          102 KIS-LLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~-llG~~~vGKSsLl~~l~~  122 (284)
                      ||+ |+|.+|+|||||+.+++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            554 999999999999999964

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.28  E-value=0.0013  Score=51.37  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..++|+|+|.||+||||+...+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999999875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.27  E-value=0.0011  Score=49.28  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |++.|.+|+|||||++++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            678999999999999998653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.25  E-value=0.0011  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +||+|+|.||+||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.20  E-value=0.0012  Score=50.77  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +||+|+|.||+||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0014  Score=50.49  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+||+|+|.+|+||||+...+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0014  Score=50.43  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +||+|+|.||+||||+...+..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.09  E-value=0.0011  Score=51.46  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +++|+|+|.+|+||||+...|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.08  E-value=0.0016  Score=50.51  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+||+++|.||+||||+...|..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999988863

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.04  E-value=0.0015  Score=49.10  Aligned_cols=20  Identities=15%  Similarity=0.330  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |+|.|.+||||||++++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.0016  Score=50.98  Aligned_cols=22  Identities=27%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .=|+++|.||+|||||.+++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0017  Score=49.24  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|.+.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0016  Score=48.33  Aligned_cols=21  Identities=24%  Similarity=0.320  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|+|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888854

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.79  E-value=0.0023  Score=49.00  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=17.7

Q ss_pred             eEEE-EEcCCCCChHHHHHHHh
Q 023316          101 LKIS-LLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       101 ~KI~-llG~~~vGKSsLl~~l~  121 (284)
                      +||+ |.|.+||||||+++.+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4676 46999999999999885

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0025  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .=|+++|.+|+||||+..++..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999854

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.69  E-value=0.0023  Score=48.54  Aligned_cols=20  Identities=25%  Similarity=0.255  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      ||+++|.+||||||+.+.+.
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            69999999999999987774

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0032  Score=48.78  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+|+|.||+||||....+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.003  Score=49.02  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|+|++|||||||++++...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.50  E-value=0.0092  Score=48.30  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARI  148 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~  148 (284)
                      -+.++|+.|+|||||++.+.+-..    |+      ...+.++|..+
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~----p~------sG~I~~~g~~i   67 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE----PS------RGQIYIGDKLV   67 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC----CS------EEEEEETTEEE
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC----CC------CCEEEECCEEe
Confidence            478999999999999999987542    22      23556666553

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.49  E-value=0.0042  Score=48.13  Aligned_cols=23  Identities=22%  Similarity=0.187  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...|+|+|.||+||||+..++..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.49  E-value=0.0034  Score=49.50  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .++++|+.|+|||||++.+++-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            37799999999999999998743

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0038  Score=50.74  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +|+|+|..|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999874

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.40  E-value=0.08  Score=42.70  Aligned_cols=87  Identities=17%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCCcCCcc-cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCC-CceE--EEEeCCCCCCCCCCCc
Q 023316          148 IAFSIWDVGGDSRSFD-HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPI--LIGTKFDDFVRLPPDL  223 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~-~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~-~~~I--lv~nK~Dl~~~~~~~~  223 (284)
                      +.+.+.||++.-.... ........||.++++.+. +..++......+..+...... .+.+  +|.|+.+.    ..  
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~----~~--  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV----AN--  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS----SC--
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecC----CC--
Confidence            4577888876543222 222233457888877765 466676666666666554332 2222  78899883    11  


Q ss_pred             ccchHHHHHHHHHHcCCcEEE
Q 023316          224 QWTIATQARAYAKAMKATLFF  244 (284)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~  244 (284)
                         ..+..+++++..+.+++.
T Consensus       189 ---~~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         189 ---EYELLDAFAKELGSQLIH  206 (269)
T ss_dssp             ---CHHHHHHHHHHHTCCEEE
T ss_pred             ---ccchhhhhHhhcCCeEEE
Confidence               134456667777766543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0039  Score=46.89  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|+|.+|+||||+.+.+..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.33  E-value=0.0041  Score=47.83  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|+|++|||||||++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.31  E-value=0.0042  Score=47.12  Aligned_cols=19  Identities=16%  Similarity=0.142  Sum_probs=16.9

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 023316          103 ISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~  121 (284)
                      |+|.|.+||||||+++.+.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999999884

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.31  E-value=0.0045  Score=50.29  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|+.|+|||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999998764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.29  E-value=0.0046  Score=46.62  Aligned_cols=21  Identities=19%  Similarity=0.205  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|.|.+|+||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999888643

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.28  E-value=0.004  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.188  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|+|.|+||+|||||+..+.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999998654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0051  Score=48.21  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|++|||||+++..+...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            6899999999999999888653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.25  E-value=0.0044  Score=49.93  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -+.++|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            3789999999999999988764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.042  Score=43.73  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .+++.|++|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999988754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0048  Score=49.76  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            37899999999999999987753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.22  E-value=0.0047  Score=50.56  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++|+|+.|+|||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999998764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.21  E-value=0.0045  Score=46.75  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      +|+++|.+|+||||+...+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            48999999999999988874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.005  Score=50.29  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|+.|+|||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5889999999999999998764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0052  Score=47.39  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|+|++|+||+||+++++..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.17  E-value=0.0051  Score=49.83  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR  147 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~  147 (284)
                      -++++|+.|+|||||++.+.+-..    |+      ...+.++|..
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~----p~------~G~I~~~G~~   61 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK----PD------RGEVRLNGAD   61 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC----CS------EEEEEETTEE
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC----CC------ceEEEECCEE
Confidence            367999999999999999987542    22      3456677765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.0052  Score=47.76  Aligned_cols=20  Identities=25%  Similarity=0.424  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0052  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++|+|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5889999999999999999874

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.05  E-value=0.0058  Score=45.88  Aligned_cols=21  Identities=29%  Similarity=0.278  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|.|.+|+||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            445599999999999998653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.03  E-value=0.0059  Score=49.41  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37899999999999999998754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.01  E-value=0.0058  Score=47.40  Aligned_cols=21  Identities=33%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|+++|+||+||||+...+..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0065  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++++|++|||||+++..+...
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999988653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0065  Score=47.95  Aligned_cols=21  Identities=14%  Similarity=0.211  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|+|++|||||||+++++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.88  E-value=0.0094  Score=44.74  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=18.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 023316          100 SLKISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~  121 (284)
                      .+-|.+.|.+|+||||+...|.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4568899999999999988775

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.88  E-value=0.0068  Score=45.95  Aligned_cols=19  Identities=21%  Similarity=0.232  Sum_probs=17.3

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 023316          103 ISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~  121 (284)
                      |+++|.+||||||+.+.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999988884

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.81  E-value=0.0069  Score=48.49  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .+++.|+||+||||+++.+.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.0069  Score=49.07  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR  147 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~  147 (284)
                      -+.++|+.|+|||||++.+.+-..    ++      ..++.++|..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~~----p~------sG~I~~~g~~   68 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLER----PT------EGSVLVDGQE   68 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC----CS------EEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHcCCcc----cc------CCceEEcCeE
Confidence            377999999999999999977432    22      2356667765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.73  E-value=0.0073  Score=46.82  Aligned_cols=20  Identities=30%  Similarity=0.272  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |+|+|.||+||||+..++..
T Consensus        11 I~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77999999999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.62  E-value=0.0082  Score=48.64  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      +.++|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6799999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.62  E-value=0.0082  Score=47.94  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+++.|+||+||||+++.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            489999999999999998865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.0063  Score=49.01  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      +.++|+.|+|||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            779999999999999999873

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.60  E-value=0.0055  Score=50.17  Aligned_cols=21  Identities=14%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +++|+|..|+|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999987765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.57  E-value=0.0057  Score=49.19  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=26.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeE
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR  147 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~  147 (284)
                      ++++|+.|+|||||++.+.+-..    |+      ...+.++|..
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~~----p~------sG~I~~~G~~   63 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFHV----PD------SGRILLDGKD   63 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSC----CS------EEEEEETTEE
T ss_pred             EEEECCCCCcHHHHHHHHhcCcC----CC------CCEEEEccEe
Confidence            78999999999999999987542    22      3355667655

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.0088  Score=48.37  Aligned_cols=22  Identities=23%  Similarity=0.173  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      +.++|+.|+|||||++.+.+-.
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6699999999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.43  E-value=0.0091  Score=48.14  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|+|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            377899999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.0049  Score=47.36  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ..-|.+.|.+|+||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999998853

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.19  E-value=0.011  Score=48.13  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      +.++|+.|+|||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6799999999999999998753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.05  E-value=0.013  Score=47.93  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEE
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARI  148 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~  148 (284)
                      -+.++|..|+|||||++.+.+-..    ++      ...+.++|..+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~~----p~------~G~I~~~G~~i   66 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLEK----PS------EGAIIVNGQNI   66 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC----CS------EEEEEETTEEC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcc----CC------CCCEEECCEEe
Confidence            478999999999999999976432    22      23556677654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.92  E-value=0.014  Score=44.55  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+=|.|-|.+|+|||||.++|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999853

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.92  E-value=0.014  Score=48.96  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|+++|++|||||.|++.+.+
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhh
Confidence            478999999999999999865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.91  E-value=0.0071  Score=49.01  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998743

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.90  E-value=0.014  Score=47.25  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.|++.|++|+|||+|++.+.+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            4699999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.89  E-value=0.016  Score=45.50  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .++|++-|++||||||+...+..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999888854

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.88  E-value=0.015  Score=46.79  Aligned_cols=22  Identities=32%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -++|.|++|+|||++++.+...
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.86  E-value=0.015  Score=46.71  Aligned_cols=22  Identities=27%  Similarity=0.208  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .+++.|++|+||||++..+.+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.76  E-value=0.016  Score=45.95  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++.|++|+|||++++.+...
T Consensus        48 lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999988653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.41  E-value=0.012  Score=47.59  Aligned_cols=21  Identities=29%  Similarity=0.339  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.31  E-value=0.021  Score=46.25  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|++.|++|+|||+|++.+.+
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            389999999999999999975

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.20  E-value=0.026  Score=43.31  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=21.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhc
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ...+=|+|-|..||||||+++.+..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.90  E-value=0.018  Score=49.87  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      ++++||++|||||+++..|.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            46899999999999986554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.87  E-value=0.026  Score=44.45  Aligned_cols=20  Identities=30%  Similarity=0.222  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      +++.|++|+||||+++.+..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHH
Confidence            89999999999999988864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.87  E-value=0.026  Score=44.56  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      +++.|++|+||||+++.+...
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.72  E-value=0.029  Score=43.67  Aligned_cols=20  Identities=20%  Similarity=0.297  Sum_probs=16.9

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |++.|+||+||||+...+..
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56779999999999888754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=92.68  E-value=0.047  Score=40.98  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .=|.+-|+=|+|||||++.++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            34788999999999999999754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.029  Score=44.14  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3789999999999999999764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.60  E-value=0.03  Score=45.46  Aligned_cols=22  Identities=27%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      .|++.|++|+|||+|++.+...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5899999999999999998763

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.03  Score=45.53  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .+++.|++|+|||+|++.+..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            589999999999999999874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.53  E-value=0.034  Score=43.02  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|+|-|..||||||++..|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.52  E-value=0.038  Score=46.53  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ..|+|.|..|+|||||++.+++.-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            359999999999999999998643

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.039  Score=43.00  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      ++-|.|-|..|+|||||.+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46688999999999999988843

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.04  Score=42.17  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      +.|.|++|+|||+|...+..+-.
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999976543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.77  E-value=0.038  Score=45.04  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|++.|++|+|||+|++.+.+.
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHHH
Confidence            4899999999999999998653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.73  E-value=0.055  Score=41.34  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      .=|++.|++|+|||||...+....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3488999999999999999887543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.68  E-value=0.045  Score=42.91  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .=|.+.|.+|+|||||.+.|..
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.56  E-value=0.028  Score=47.25  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+++|++|+|||+|++++.+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            489999999999999999853

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.54  E-value=0.046  Score=44.77  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      -|.|.|.+|+|||||+..+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4779999999999999987653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.53  E-value=0.047  Score=42.91  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      +.|.|++|+|||+|...+..+-
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6789999999999999997553

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.27  E-value=0.046  Score=48.07  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +|+++|++|||||-|++++..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999843

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.21  E-value=0.051  Score=43.03  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      =++|.|++|+|||+|..+|..+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37799999999999999997654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.02  E-value=0.067  Score=40.85  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      .=|++.|++|+|||+|...+....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3488999999999999999986543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.06  Score=41.82  Aligned_cols=20  Identities=30%  Similarity=0.134  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |++-|..||||||++..+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.72  E-value=0.088  Score=40.07  Aligned_cols=24  Identities=17%  Similarity=0.248  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      ++-|.|.|..|+||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            467889999999999999988653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.40  E-value=0.082  Score=40.06  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      .=|++.|++|+|||||...+.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999887644

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.22  E-value=0.073  Score=41.99  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      =++|.|++|+|||+|+.++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4779999999999999999765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.06  E-value=0.075  Score=41.60  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcCC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~~  124 (284)
                      ++|.|++|+|||+|+..+..+-
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999997654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.018  Score=43.77  Aligned_cols=19  Identities=26%  Similarity=0.462  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 023316          103 ISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~  121 (284)
                      .+|+|..|+|||||+..+.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3478999999999999984

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=89.63  E-value=0.084  Score=45.04  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -+++.|+||+|||+|.+.+.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=0.088  Score=41.11  Aligned_cols=20  Identities=35%  Similarity=0.308  Sum_probs=16.4

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |++-|..|+||||++..+..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66779999999998777643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.066  Score=42.13  Aligned_cols=21  Identities=38%  Similarity=0.513  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .|+|-|..||||||++..|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.42  E-value=0.094  Score=41.13  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      +.+.|++|+|||.|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999998654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.35  E-value=0.07  Score=43.73  Aligned_cols=17  Identities=18%  Similarity=0.380  Sum_probs=15.8

Q ss_pred             EEEcCCCCChHHHHHHH
Q 023316          104 SLLGDCQIGKTSFVVKY  120 (284)
Q Consensus       104 ~llG~~~vGKSsLl~~l  120 (284)
                      +++|..|+||||++.++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            78999999999999877

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.14  Score=42.52  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHh
Q 023316           99 VSLKISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus        99 ~~~KI~llG~~~vGKSsLl~~l~  121 (284)
                      ..+=|.|-|.+|||||||.+.+.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHH
Confidence            36789999999999999988874

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.11  Score=40.82  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGNE  124 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~~  124 (284)
                      =+.|.|++|+|||+|...++.+-
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37799999999999999997643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.49  E-value=0.11  Score=43.23  Aligned_cols=20  Identities=25%  Similarity=0.398  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      -++++|++|||||.|+..+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHH
Confidence            47899999999999999984

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.34  E-value=0.12  Score=40.10  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      =++|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999987653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=88.15  E-value=0.12  Score=43.20  Aligned_cols=20  Identities=25%  Similarity=0.292  Sum_probs=16.8

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      +++.|+||+|||.|++.+.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            34469999999999999865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.14  Score=40.29  Aligned_cols=21  Identities=29%  Similarity=0.582  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -|+|=|..||||||+++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999999865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=87.48  E-value=0.16  Score=42.67  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC
Q 023316           98 LVSLKISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus        98 ~~~~KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      +..++|+|=|.-|+||||+++.+...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            34689999999999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.48  E-value=0.16  Score=39.51  Aligned_cols=21  Identities=5%  Similarity=0.101  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -+++.|++|+|||+++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.43  E-value=0.15  Score=41.03  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      ++|.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.26  E-value=0.18  Score=42.34  Aligned_cols=23  Identities=26%  Similarity=0.218  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .++|.|=|.-|+||||+++.+..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            58999999999999999998865

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.21  E-value=0.68  Score=33.63  Aligned_cols=47  Identities=9%  Similarity=0.098  Sum_probs=33.5

Q ss_pred             cccCCcEEEEEEeCC-----Chhh-----HHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          168 ACKDAVAILFMFDLT-----SRCT-----LNSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       168 ~~~~ad~iilv~d~~-----~~~s-----~~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      .++++|++++..-..     ++..     ..-++++.+.+.+++++...+++.|=.|
T Consensus        65 ~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD  121 (144)
T d1mlda1          65 CLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN  121 (144)
T ss_dssp             HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHH
T ss_pred             HhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence            468899998886532     1211     1224578888899998888889999888

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=87.04  E-value=0.15  Score=43.49  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 023316          102 KISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~  121 (284)
                      .++++|+.|||||-|..++.
T Consensus        70 niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHH
Confidence            49999999999999999874

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=86.91  E-value=0.16  Score=40.75  Aligned_cols=20  Identities=15%  Similarity=0.238  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      .+|.|.+|+|||+|+..+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            66899999999999988753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.89  E-value=0.17  Score=40.06  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      +++-|++|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78889999999999998754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.67  E-value=0.17  Score=42.37  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhc
Q 023316          100 SLKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      .++|.|=|.-|+||||+++.+..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            57899999999999999998854

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.21  E-value=0.15  Score=39.70  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -+++.|++++|||.|++.+++
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            488999999999999998865

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.10  E-value=0.19  Score=39.20  Aligned_cols=20  Identities=25%  Similarity=0.117  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 023316          103 ISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~  122 (284)
                      |++-|..||||||+++.+..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999888753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.05  E-value=0.29  Score=40.10  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=18.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHH
Q 023316          100 SLKISLLGDCQIGKTSFVVKY  120 (284)
Q Consensus       100 ~~KI~llG~~~vGKSsLl~~l  120 (284)
                      .+=|.|-|.+|+|||||...+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHH
Confidence            577889999999999998766

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=86.03  E-value=0.28  Score=37.88  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCCC
Q 023316          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~~~~  125 (284)
                      +-|.|.|..|+||||..+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            3467999999999999998865433

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.02  E-value=0.12  Score=42.56  Aligned_cols=19  Identities=21%  Similarity=0.361  Sum_probs=14.5

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 023316          103 ISLLGDCQIGKTSFVVKYV  121 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~  121 (284)
                      |.|-|.+|+||||+.+.|.
T Consensus         7 IgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEESCC---CCTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            8899999999999998874

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=85.75  E-value=0.17  Score=41.56  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+.++|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999888653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.45  E-value=0.2  Score=42.60  Aligned_cols=18  Identities=22%  Similarity=0.370  Sum_probs=16.1

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 023316          103 ISLLGDCQIGKTSFVVKY  120 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l  120 (284)
                      -+++|+.|+|||+++.++
T Consensus        28 ~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            358899999999999997

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=85.16  E-value=0.35  Score=37.16  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      +-|.|.|..|+||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999988754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=84.23  E-value=1.3  Score=31.75  Aligned_cols=47  Identities=15%  Similarity=0.196  Sum_probs=30.7

Q ss_pred             cccCCcEEEEEEeCCC-----hh-hH----HHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316          168 ACKDAVAILFMFDLTS-----RC-TL----NSIVGWYSEARKWNQTAIPILIGTKFD  214 (284)
Q Consensus       168 ~~~~ad~iilv~d~~~-----~~-s~----~~~~~~~~~l~~~~~~~~~Ilv~nK~D  214 (284)
                      .++++|.+++..-...     +. -+    .-+.++.+.+.+++++...+++.|=+|
T Consensus        66 ~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd  122 (142)
T d1guza1          66 DTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD  122 (142)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHH
T ss_pred             HhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChH
Confidence            4688999888864321     11 11    113467788888888887777777766

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.28  E-value=2.2  Score=34.39  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+.++|.+|+|||+|+..+..+
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            7899999999999998776544

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=83.20  E-value=0.3  Score=42.01  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 023316          103 ISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       103 I~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+|.|+.|+||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=82.00  E-value=0.26  Score=39.85  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHH
Q 023316          103 ISLLGDCQIGKTSFV  117 (284)
Q Consensus       103 I~llG~~~vGKSsLl  117 (284)
                      ++|+|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            578999999999754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.74  E-value=0.39  Score=38.86  Aligned_cols=114  Identities=12%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             EEEEEEeCCCCcCCccccccc-ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceE--EEEeCCCCCCCCCCCc
Q 023316          148 IAFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPI--LIGTKFDDFVRLPPDL  223 (284)
Q Consensus       148 ~~l~l~Dt~G~e~~~~~~~~~-~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~-~~~~~I--lv~nK~Dl~~~~~~~~  223 (284)
                      +.+.++|+++.-......... ...++.++++.. .+..++..+...++.+.+.. .....+  +|.|+.+.    .   
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~----~---  190 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT----D---  190 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC----T---
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcc----h---
Confidence            456788887654332222222 234566666643 34556666665555554432 222333  88999872    1   


Q ss_pred             ccchHHHHHHHHHHcCCcEEEE---------cCCC---------CcCHHHHHHHHHHHHhCCcccc
Q 023316          224 QWTIATQARAYAKAMKATLFFS---------SATH---------NINVNKIFKFIMAKLFNLPWTV  271 (284)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~~---------Sa~~---------~~~v~~lf~~l~~~i~~~~~~~  271 (284)
                        ...+...++++.++.+++.+         +...         +...-+.|..|++.+.+.+...
T Consensus       191 --~~~~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~~  254 (289)
T d2afhe1         191 --REDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLV  254 (289)
T ss_dssp             --THHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCCB
T ss_pred             --hhHHHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCCC
Confidence              11334566777777765541         1112         2234456888888888765433

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=81.32  E-value=0.31  Score=39.80  Aligned_cols=15  Identities=20%  Similarity=0.414  Sum_probs=13.2

Q ss_pred             EEEEcCCCCChHHHH
Q 023316          103 ISLLGDCQIGKTSFV  117 (284)
Q Consensus       103 I~llG~~~vGKSsLl  117 (284)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=80.92  E-value=0.39  Score=41.07  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 023316          101 LKISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       101 ~KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -.++|+|.+|+|||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3599999999999999877754

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.79  E-value=0.37  Score=39.21  Aligned_cols=22  Identities=36%  Similarity=0.748  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 023316          102 KISLLGDCQIGKTSFVVKYVGN  123 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~~  123 (284)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999888654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.16  E-value=0.41  Score=39.70  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 023316          102 KISLLGDCQIGKTSFVVKYVG  122 (284)
Q Consensus       102 KI~llG~~~vGKSsLl~~l~~  122 (284)
                      -++++|++|+|||.|+..+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            367889999999999998753