Citrus Sinensis ID: 023335

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHcEEEccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEEEEEcccccccccccccccEEEEEEEccEEEEEEEEEccccccccccHHHHHHcccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHEHcccccccEEEEEEEcccccccccccHHccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHccccccEEEEEEEEEEEEEEEcccEEEEEEEEcccccHEEEEcHHHHHcccEEEEEEEcccHcHHHHHHHHHHHHHHHHcccEEEEEEccccccEcccccccEccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccEEcc
Coil and Loop (DISEMBL)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSigkqpavryqkltrrsssesspapdtmEAGLVELSRtfssgydtdsdLVSLKISllgdcqigKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSiwdvggdsrsfdhvpiACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQtaipiligtkfddfvrlppdlqWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLfnlpwtvkrnltigepiidf
Flexible Loop (DISEMBL)
MAKIIHEATENMTQLCRRVVHvnirrslfdrvSIFRRFFRFIWERILVcsigkqpavryqkltrrsssesspapdtMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFnlpwtvkrnltigepiidf
Low Complexity Region (SEG)
MAKIIHEATENMTQLCRRVVHVNIRRSLfdrvsifrrffrfiweriLVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF
Disordered region (IsUnstruct)
*********ENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY****************************F*SGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPI***
Disordered Region (DISOPRED)
*********ENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILV**************************************************VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF***************IIDF
Disordered Region (DISEMBL)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR******************MEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF
Disordered Region (DISPRO)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRR*****************************DSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVK******E*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
P87027	198	Septum-promoting GTP-bind	yes	no	0.674	0.964	0.492	1e-49
P38987	245	Protein TEM1 OS=Saccharom	yes	no	0.653	0.755	0.406	1e-34
Q9VP48	388	Ras-related protein Rab-2	yes	no	0.406	0.296	0.390	3e-13
Q9UL26	194	Ras-related protein Rab-2	yes	no	0.547	0.798	0.273	2e-11
P55745	223	Ras-related protein Rab-2	no	no	0.537	0.681	0.275	2e-11
P35285	194	Ras-related protein Rab-2	yes	no	0.547	0.798	0.273	2e-11
Q6AXT5	223	Ras-related protein Rab-2	yes	no	0.537	0.681	0.275	2e-11
Q9UL25	225	Ras-related protein Rab-2	no	no	0.537	0.675	0.275	3e-11
Q17R06	222	Ras-related protein Rab-2	yes	no	0.537	0.684	0.275	4e-11
P35282	222	Ras-related protein Rab-2	no	no	0.537	0.684	0.275	4e-11

>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 133/193 (68%), Gaps = 2/193 (1%)

Query: 93  DTDSDLVSLKISLLGDCQIGKTSF-VKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 150
           D   + V++K+ ++GD  IGKTS  V YV G+  E S Q  G+N + KT+ ++   I FS
Sbjct: 3   DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62

Query: 151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGT 210
           IWD+GG     + +P+ C DAVAILFMFDL+ + TLNSI  WY +AR +N+TA+PILIGT
Sbjct: 63  IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGT 122

Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
           K+D F+  P + Q  I  QAR YAKAMKA+L F S +H+INV KIFK ++AK+F+L  T+
Sbjct: 123 KYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTI 182

Query: 271 KRNLTIGEPIIDF 283
                +G+PI+++
Sbjct: 183 PEIKNVGDPILEY 195

GTP-binding protein essential for the induction of septum formation at G2 and pre-START stages of mitosis. Acts via the cdc7 protein kinase pathway.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38987|TEM1_YEAST Protein TEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TEM1 PE=1 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 114/187 (60%), Gaps = 2/187 (1%)

Query: 99  VSLKISLLGDCQIGKTSF-VKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V +++ L+GD Q+GKTS  VKYV N  ++   Q  G+N + + + ++   I FSI D+GG
Sbjct: 19  VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78

Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
                + +PIA   +  I+F+FDLT   TL+SI  WY +A   N +AIPIL+GTK+D  +
Sbjct: 79  QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLI 138

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTI 276
            L P+ Q  I+  +  YA+ M A L F S   +IN+ KIFK  +AK+FNL  T+     I
Sbjct: 139 DLDPEYQEQISRTSMKYAQVMNAPLIFCSTAKSINIQKIFKIALAKIFNLTLTIPEINEI 198

Query: 277 GEPIIDF 283
           G+P++ +
Sbjct: 199 GDPLLIY 205

GTP-binding protein involved in termination of M phase. May play a role in triggering the degradation of G2 cyclin to inactivate M-phase promoting factor at the termination of mitosis. Acts upstream of CDC15 kinase and may be required to activate the CDC15 protein kinase pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 8/123 (6%)

Query: 97  DLVSLKISLLGDCQIGKTSF-VKYVGNEQERSL----QMAGLNLINKTLMVQGARIAFSI 151
           D V+ K  LLGD  +GKTSF VKY  N  E  L       G+ L NK ++V G R+   I
Sbjct: 187 DTVNHKTILLGDSGVGKTSFLVKY--NTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQI 244

Query: 152 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGT 210
           WD  G  R         +DA A+L ++D+T++ T ++I  W  E R++ Q  + I LIG 
Sbjct: 245 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGN 304

Query: 211 KFD 213
           K D
Sbjct: 305 KAD 307

Participates in exocrine secretion.

Drosophila melanogaster (taxid: 7227)

>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
           L  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+  Q     F IWD  
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62

Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
           G  R     P+  + + A + ++D+T   T +++  W  E R+     I + I     D 
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122

Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           +    D++  +   A+ YA ++ A    +SA + IN+N++F
Sbjct: 123 I----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159

Homo sapiens (taxid: 9606)

>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 17  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 77  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Canis familiaris (taxid: 9615)

>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
           L  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+  Q     F IWD  
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62

Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
           G  R     P+  + + A + ++D+T   T +++  W  E R+    +I + I     D 
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122

Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
                D++  +   A+ YA ++ A    +SA + IN+N++F
Sbjct: 123 T----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159

Mus musculus (taxid: 10090)

>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 17  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 77  ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Rattus norvegicus (taxid: 10116)

>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 19  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 78

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 79  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 135

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 136 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 173

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration (By similarity). During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Homo sapiens (taxid: 9606)

>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 16  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 75

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 76  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVD--- 132

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 133 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 170

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Bos taurus (taxid: 9913)

>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 17  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 77  ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224117478	278	predicted protein [Populus trichocarpa]	0.971	0.989	0.744	1e-119
224126377	279	predicted protein [Populus trichocarpa]	0.968	0.982	0.736	1e-115
356553345	282	PREDICTED: septum-promoting GTP-binding	0.978	0.982	0.724	1e-115
356501505	282	PREDICTED: septum-promoting GTP-binding	0.971	0.975	0.719	1e-114
225461736	282	PREDICTED: septum-promoting GTP-binding	0.964	0.968	0.738	1e-112
147838102	277	hypothetical protein VITISV_008356 [Viti	0.964	0.985	0.738	1e-112
357494385	289	Ras-related protein Rab-37 [Medicago tru	0.996	0.975	0.689	1e-112
297796357	288	GTP-binding family protein [Arabidopsis	0.992	0.975	0.656	1e-104
356567378	284	PREDICTED: septum-promoting GTP-binding	0.978	0.975	0.665	1e-100
255648030	289	unknown [Glycine max]	0.918	0.899	0.689	1e-100

>gi|224117478|ref|XP_002317584.1| predicted protein [Populus trichocarpa] gi|222860649|gb|EEE98196.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/286 (74%), Positives = 244/286 (85%), Gaps = 11/286 (3%)

Query: 1   MAKIIHEATENMTQLCRRVVHV-NIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY 59
           MA+++HE    MTQLCR VVHV NI+ ++ +RV++F++FF+FIW+RIL CSIGK   VRY
Sbjct: 1   MAEVVHE---KMTQLCREVVHVKNIKWNILERVTVFKQFFQFIWDRILACSIGK--PVRY 55

Query: 60  QKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VK 118
           ++L  R  S   P P+ MEAG+  L     SG++ DSDLV LKISLLGDCQIGKTSF +K
Sbjct: 56  RRLASRPYS---PPPEAMEAGVESLEAASCSGFNPDSDLVRLKISLLGDCQIGKTSFMIK 112

Query: 119 YVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177
           YVG+EQE+  L M GLNL++KTL VQGARI+FSIWDV GDSRS DHVPIACKDAVAILFM
Sbjct: 113 YVGDEQEKKCLGMTGLNLMDKTLFVQGARISFSIWDVAGDSRSIDHVPIACKDAVAILFM 172

Query: 178 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM 237
           FDLTSRCTLNS++ WYS+ARKWNQTAIPILIGTKFDDFV+LPP+LQWTI TQARAYAKAM
Sbjct: 173 FDLTSRCTLNSVLEWYSQARKWNQTAIPILIGTKFDDFVQLPPNLQWTIVTQARAYAKAM 232

Query: 238 KATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           KATLFFSSA HNINVNKIFKFIMAKL NLPWTV+RNLTIGEPIIDF
Sbjct: 233 KATLFFSSAKHNINVNKIFKFIMAKLLNLPWTVERNLTIGEPIIDF 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126377|ref|XP_002319823.1| predicted protein [Populus trichocarpa] gi|222858199|gb|EEE95746.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/288 (73%), Positives = 247/288 (85%), Gaps = 14/288 (4%)

Query: 1   MAKIIHEATENMTQLCRRVVHVN-IRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY 59
           M+KI+HE    MTQLC ++ H N I+ S+ +RV++F++FF FIW++IL CSIGK PA RY
Sbjct: 1   MSKIVHE---KMTQLCVKIAHGNSIKWSILERVTVFKQFFHFIWDKILACSIGK-PA-RY 55

Query: 60  QKLTRRSSSESSPAPDTMEAGLVELSRTFSS--GYDTDSDLVSLKISLLGDCQIGKTSFV 117
           ++LT RS S   P P+ +EAG VE S   +S  G+  DSDLVSLKISLLGDCQIGKTSFV
Sbjct: 56  RRLTYRSCS---PPPEAIEAG-VETSLEAASCRGFSKDSDLVSLKISLLGDCQIGKTSFV 111

Query: 118 -KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175
            KYVG+EQE+  L+M GL+L++KTL VQGARI+FSIWDV GDS S DHVPIACKDAVAIL
Sbjct: 112 IKYVGDEQEKKCLEMTGLSLMDKTLFVQGARISFSIWDVAGDSSSLDHVPIACKDAVAIL 171

Query: 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK 235
           FMFDLTSRCTLN++V WY++ARKWNQTAIPILIGTKFDDFV+LPP+LQWTI TQARAYAK
Sbjct: 172 FMFDLTSRCTLNNVVEWYNQARKWNQTAIPILIGTKFDDFVQLPPNLQWTIVTQARAYAK 231

Query: 236 AMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           AMKATLFFSS+ HNINVNKIFKFIMAKLFNLPWTV+RNLT+GEPIIDF
Sbjct: 232 AMKATLFFSSSKHNINVNKIFKFIMAKLFNLPWTVERNLTVGEPIIDF 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553345|ref|XP_003545017.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/283 (72%), Positives = 236/283 (83%), Gaps = 6/283 (2%)

Query: 3   KIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKL 62
           KIIH+ T  M+QLC+++V V++R     RVS    FFRFIW R++VCS+   P+  Y+KL
Sbjct: 4   KIIHDTTRKMSQLCQKIVQVDVRWGFLKRVSFVGHFFRFIWNRLVVCSVAGSPS-HYRKL 62

Query: 63  TRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVG 121
             R  S S PA  T++  +   + T + GYD+DSDLV+LKISLLGDC IGKT+FV KYVG
Sbjct: 63  PLRDPSSSPPA--TVD-DVFSSAATTTGGYDSDSDLVNLKISLLGDCHIGKTTFVIKYVG 119

Query: 122 NEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180
           NEQE+ SLQM GLNL++KTL VQGARI+F IWDV GD RS D +P+ACKDAVAIL MFDL
Sbjct: 120 NEQEKGSLQMEGLNLMDKTLSVQGARISFRIWDVAGDKRSLDQIPMACKDAVAILIMFDL 179

Query: 181 TSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT 240
           TSRCTLNS+VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD+QWTIATQARAYA+AMKAT
Sbjct: 180 TSRCTLNSVVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDVQWTIATQARAYARAMKAT 239

Query: 241 LFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           LFFSSATHNINVNKIFKFIMAKLFNLPWTV+RNL +GEPIIDF
Sbjct: 240 LFFSSATHNINVNKIFKFIMAKLFNLPWTVERNLRVGEPIIDF 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501505|ref|XP_003519565.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/285 (71%), Positives = 236/285 (82%), Gaps = 10/285 (3%)

Query: 3   KIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKL 62
           KIIH+ T  M+QLC+++V V++R  +  RVS    FFRFIW R+LVCS+  +P+ +Y+KL
Sbjct: 4   KIIHDTTRKMSQLCQKIVKVDVRWGVLKRVSFVGHFFRFIWNRLLVCSVAGRPS-QYRKL 62

Query: 63  TRRSSSESSP--APDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KY 119
             R  S S P  A D   +     + T + GYD+DSDLV+LKISLLGDC IGKT+FV KY
Sbjct: 63  PVRDPSSSPPSYADDVFFS-----ATTTTGGYDSDSDLVNLKISLLGDCHIGKTTFVIKY 117

Query: 120 VGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178
           VGNEQE RSLQM GLNL++KTL VQGARI+F IWDV GD RS D +P+ACKD+VAIL MF
Sbjct: 118 VGNEQEKRSLQMEGLNLMDKTLSVQGARISFRIWDVAGDKRSLDQIPMACKDSVAILIMF 177

Query: 179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK 238
           DLTSRCTLNS+VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD+QWTI TQARAYA+AMK
Sbjct: 178 DLTSRCTLNSVVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDVQWTIVTQARAYARAMK 237

Query: 239 ATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           ATLFFSSATHNINVNKIFKFIMAKLFNLPWTV+RNL +GEPIIDF
Sbjct: 238 ATLFFSSATHNINVNKIFKFIMAKLFNLPWTVERNLRVGEPIIDF 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461736|ref|XP_002285529.1| PREDICTED: septum-promoting GTP-binding protein 1 [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/279 (73%), Positives = 241/279 (86%), Gaps = 6/279 (2%)

Query: 7   EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRS 66
           EAT  MTQLCR++V VNIR  + DRV+IF++FFRFIW+RI+VCSIGK   +RY +L+RRS
Sbjct: 8   EATGKMTQLCRKIVRVNIRVRILDRVTIFQKFFRFIWDRIIVCSIGK--PIRYHRLSRRS 65

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQE 125
              S    +T+E+GL     + ++G D+DSDLVSLKI ++GDCQIGKTSF +KYVG+EQE
Sbjct: 66  PPPSPSP-ETIESGLQSDDPSTAAG-DSDSDLVSLKICVMGDCQIGKTSFLIKYVGDEQE 123

Query: 126 RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 184
           +  L+M GLNL++KTL+VQ ARIAFSIWDVGGD  S  HVPIACKDAVAILFMFDLTSRC
Sbjct: 124 KKCLEMTGLNLMDKTLIVQDARIAFSIWDVGGDHTSLTHVPIACKDAVAILFMFDLTSRC 183

Query: 185 TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244
           TLNS++GWYS+AR+WNQTAIPI+IGTKFDDFV+LPPDLQ  I TQAR YA+AMKATLFFS
Sbjct: 184 TLNSVIGWYSQARRWNQTAIPIMIGTKFDDFVKLPPDLQRPIVTQARGYARAMKATLFFS 243

Query: 245 SATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           SATHNINVNKIFKFIMAKLFNLPWTV+RNLTIGEPIIDF
Sbjct: 244 SATHNINVNKIFKFIMAKLFNLPWTVQRNLTIGEPIIDF 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838102|emb|CAN60928.1| hypothetical protein VITISV_008356 [Vitis vinifera] gi|302142871|emb|CBI20166.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/279 (73%), Positives = 241/279 (86%), Gaps = 6/279 (2%)

Query: 7   EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRS 66
           EAT  MTQLCR++V VNIR  + DRV+IF++FFRFIW+RI+VCSIGK   +RY +L+RRS
Sbjct: 3   EATGKMTQLCRKIVRVNIRVRILDRVTIFQKFFRFIWDRIIVCSIGK--PIRYHRLSRRS 60

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQE 125
              S    +T+E+GL     + ++G D+DSDLVSLKI ++GDCQIGKTSF +KYVG+EQE
Sbjct: 61  PPPSPSP-ETIESGLQSDDPSTAAG-DSDSDLVSLKICVMGDCQIGKTSFLIKYVGDEQE 118

Query: 126 RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 184
           +  L+M GLNL++KTL+VQ ARIAFSIWDVGGD  S  HVPIACKDAVAILFMFDLTSRC
Sbjct: 119 KKCLEMTGLNLMDKTLIVQDARIAFSIWDVGGDHTSLTHVPIACKDAVAILFMFDLTSRC 178

Query: 185 TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244
           TLNS++GWYS+AR+WNQTAIPI+IGTKFDDFV+LPPDLQ  I TQAR YA+AMKATLFFS
Sbjct: 179 TLNSVIGWYSQARRWNQTAIPIMIGTKFDDFVKLPPDLQRPIVTQARGYARAMKATLFFS 238

Query: 245 SATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           SATHNINVNKIFKFIMAKLFNLPWTV+RNLTIGEPIIDF
Sbjct: 239 SATHNINVNKIFKFIMAKLFNLPWTVQRNLTIGEPIIDF 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494385|ref|XP_003617481.1| Ras-related protein Rab-37 [Medicago truncatula] gi|355518816|gb|AET00440.1| Ras-related protein Rab-37 [Medicago truncatula]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/290 (68%), Positives = 242/290 (83%), Gaps = 8/290 (2%)

Query: 1   MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQ 60
           MAK+I E T+ MTQLCR++V V+++  +  RVS   +FFRFIW +++VCS+G+ PA +Y+
Sbjct: 1   MAKVIQETTKKMTQLCRKIVQVDVKYGMLQRVSFVGQFFRFIWNKLMVCSVGRSPA-QYR 59

Query: 61  KLTRRSSSESSPA-----PDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTS 115
           +L+   SS SS +     P T++ G     +  ++GY++DSDLV+LKISLLGDC IGKT+
Sbjct: 60  RLSLNHSSASSSSSLSPSPATVDDGFTREQQHTNNGYESDSDLVNLKISLLGDCHIGKTT 119

Query: 116 F-VKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173
           F +KYVGNE E RSLQM GLNL++KTL VQGARI+F IWDV GD +S D +P+ACKDAVA
Sbjct: 120 FLIKYVGNEVEKRSLQMEGLNLMDKTLYVQGARISFCIWDVAGDKKSLDQIPMACKDAVA 179

Query: 174 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY 233
           +L MFDLTSR TLN++VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI TQARAY
Sbjct: 180 LLIMFDLTSRSTLNNVVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIVTQARAY 239

Query: 234 AKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           A+AMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT++RNL +GEPIIDF
Sbjct: 240 ARAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTIERNLKVGEPIIDF 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796357|ref|XP_002866063.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297311898|gb|EFH42322.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/288 (65%), Positives = 226/288 (78%), Gaps = 7/288 (2%)

Query: 1   MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQ 60
           MA+ +HE    +T  CR++VHVNI+  + +RVSIF  FFRF+W +I+ CS   +  + Y+
Sbjct: 1   MAEKVHEIAGKLTPFCRKIVHVNIKWRIIERVSIFGDFFRFLWRKIVSCSSIIEKPILYR 60

Query: 61  KLTRRSSSESSPAPDTMEAGLVELS---RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV 117
           ++  R SS +    D  +    E +   R F SG  +DSDLVSLKISLLGDCQ GKT+FV
Sbjct: 61  QIVHRISSTAGDIFDGDDDTATEHTVSTRRFGSG--SDSDLVSLKISLLGDCQTGKTTFV 118

Query: 118 -KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFDHVPIACKDAVAIL 175
            KYVG+E +  L+M GLNL++KT  VQG  I+FSIWDVGGD  RS DH+PIACKDAVAIL
Sbjct: 119 IKYVGDENQGFLEMTGLNLMDKTFYVQGVTISFSIWDVGGDEKRSKDHIPIACKDAVAIL 178

Query: 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK 235
           FMFDLTSR TLN + GWYS+ARKWN+TAIPILIGTKFDDFVRLPP+LQWTI TQARAYAK
Sbjct: 179 FMFDLTSRSTLNRVFGWYSQARKWNKTAIPILIGTKFDDFVRLPPNLQWTIVTQARAYAK 238

Query: 236 AMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
            MKA+LFFSSATHNINVNKIFKFI+AKLFNLPW + RNLT+GEPIID+
Sbjct: 239 VMKASLFFSSATHNINVNKIFKFILAKLFNLPWKIDRNLTLGEPIIDY 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567378|ref|XP_003551897.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/290 (66%), Positives = 223/290 (76%), Gaps = 13/290 (4%)

Query: 1   MAKIIHEATENMT----QLCRRVVH-VNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQP 55
           MAKII ++    T    QLC R+VH VN+  +LF RVS   RF   IW+R+L+CS+G+  
Sbjct: 1   MAKIIGKSRRRRTTTTQQLCHRMVHHVNVHCNLFHRVSFLGRF---IWDRMLLCSLGRP- 56

Query: 56  AVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTS 115
              Y +L  R     +             + T  S  D+DSDLV+LKISLLGDC IGKTS
Sbjct: 57  --SYLRLPLRDPPPQATVHGGASMHGYPFTTTTPSPCDSDSDLVNLKISLLGDCHIGKTS 114

Query: 116 FV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173
           FV KYVG+EQE RSLQM GLNL++KTL VQGARI+FSIWDV GD+ S   +P+ACKD+VA
Sbjct: 115 FVIKYVGDEQEKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDTGSLYQIPMACKDSVA 174

Query: 174 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY 233
           IL MFDLTSRCTLNS+VGWYS+ARKWNQ AIPILIGTKFDDFV+LPPD+QWTI TQARAY
Sbjct: 175 ILIMFDLTSRCTLNSVVGWYSKARKWNQIAIPILIGTKFDDFVKLPPDVQWTIVTQARAY 234

Query: 234 AKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           A+AM ATLFFSSATHNINVNKIFKFIMAKLFNLPW V+RNLT+GEP IDF
Sbjct: 235 ARAMNATLFFSSATHNINVNKIFKFIMAKLFNLPWKVERNLTLGEPTIDF 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648030|gb|ACU24471.1| unknown [Glycine max]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/280 (68%), Positives = 222/280 (79%), Gaps = 20/280 (7%)

Query: 14  QLCRRVVH--VNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESS 71
           QLC R+VH  VN+R +LF  +S   RF   IW+RIL+CS+G+     Y +L  R S    
Sbjct: 20  QLCNRMVHHHVNVRCNLFHSMSFLGRF---IWDRILLCSLGRP---SYLRLPLRDS---- 69

Query: 72  PAPDTMEAGLVEL-SRTFSSGY-----DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQ 124
           P P T+  G   L    F++       D+DSDLV+LKISLLGDC IGKTSFV KYVG+EQ
Sbjct: 70  PPPATVNGGGGSLHGHPFTTTTTTIPCDSDSDLVNLKISLLGDCHIGKTSFVIKYVGDEQ 129

Query: 125 E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183
           E RSLQM GLNL++KTL VQGARI+FSIWDV GD  S   +P+ACKD+VAIL MFDLTSR
Sbjct: 130 EKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDPGSICQIPMACKDSVAILIMFDLTSR 189

Query: 184 CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 243
           CTLNS+VGWYS+ARKWNQTAIPILIGTKFDDFV+LPPD+QWTI TQARAYA+AMKATLFF
Sbjct: 190 CTLNSVVGWYSKARKWNQTAIPILIGTKFDDFVKLPPDVQWTIVTQARAYARAMKATLFF 249

Query: 244 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
           SSA+HNINVNKIFKFIMAKLFNLPW V+RNLT+GEP IDF
Sbjct: 250 SSASHNINVNKIFKFIMAKLFNLPWKVERNLTLGEPTIDF 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2160125	288	SGP1 [Arabidopsis thaliana (ta	0.992	0.975	0.604	2.6e-86
TAIR|locus:2093019	292	SGP2 [Arabidopsis thaliana (ta	0.667	0.647	0.711	1.1e-74
ASPGD|ASPL0000066888	314	spgA [Emericella nidulans (tax	0.759	0.684	0.470	4.7e-48
POMBASE|SPAC1565.06c	198	spg1 "GTPase Spg1" [Schizosacc	0.674	0.964	0.492	8.8e-47
DICTYBASE|DDB_G0291269	203	spg1 "small GTPase" [Dictyoste	0.692	0.965	0.479	2.3e-46
SGD|S000004529	245	TEM1 "GTP-binding protein of t	0.646	0.746	0.410	2e-33
SGD|S000001889	215	SEC4 "Rab family GTPase essent	0.614	0.809	0.301	3.8e-14
FB|FBgn0015793	219	Rab19 "Rab19" [Drosophila mela	0.554	0.716	0.299	6.2e-14
FB|FBgn0086913	388	Rab26 "Rab26" [Drosophila mela	0.409	0.298	0.409	1.5e-13
DICTYBASE|DDB_G0291738	196	rabG1 "Rab GTPase" [Dictyostel	0.575	0.831	0.275	2.1e-13

TAIR|locus:2160125 SGP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 174/288 (60%), Positives = 210/288 (72%)

Query:     1 MAKIIHEATENMTQLCRRVVHVNIRRSLXXXXXXXXXXXXXXXXXXLVCSIGKQPAVRYQ 60
             MA+ +HE    +T  CR++VHVN +  +                  + CS   +  + Y+
Sbjct:     1 MAEKVHEIAGKITPFCRKIVHVNRKWRIIERVSIFGDFFRFLWRKIVSCSSIIEKPILYR 60

Query:    61 KLTRRSSSESSPAPDTMEAGLVELS---RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV 117
             ++  + SS +    D  +    E +   R F S   +DSDLVSLKISLLGDCQ GKT+FV
Sbjct:    61 RIVHKISSTAGDIFDGDDDTTTEPTVSGRRFGSS--SDSDLVSLKISLLGDCQTGKTTFV 118

Query:   118 -KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFDHVPIACKDAVAIL 175
              KYVG+E +  L+M GLNL++KT  VQG  I+FSIWDVGGD  RS DH+PIACKDAVAIL
Sbjct:   119 VKYVGDENQSFLEMTGLNLMDKTFYVQGVTISFSIWDVGGDEKRSKDHIPIACKDAVAIL 178

Query:   176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK 235
             FMFDLTSR TLNS+ GWYS+ARKWN+TAIPILIGTKFDDFVRLPP+LQWTI TQARAYAK
Sbjct:   179 FMFDLTSRSTLNSVFGWYSQARKWNKTAIPILIGTKFDDFVRLPPNLQWTIVTQARAYAK 238

Query:   236 AMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283
              M A+LFFSSATHNINVNKIFKFI+A+LFNLPW + RNLT+GEPIID+
Sbjct:   239 VMNASLFFSSATHNINVNKIFKFILARLFNLPWKIDRNLTLGEPIIDY 286

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2093019 SGP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
 Identities = 138/194 (71%), Positives = 169/194 (87%)

Query:    94 TDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE---RSLQMAGLNLINKTLMVQGARIAF 149
             +DSDLVSLKISLLGD +IGKTSF+ KYVG E+E   R L+  G+N  +KTL + GARI++
Sbjct:   100 SDSDLVSLKISLLGDPEIGKTSFLAKYVGEEKEVEMRELEK-GINCTDKTLYMGGARISY 158

Query:   150 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIG 209
             SIW++ G  RS D +P+ACKD+VAILFMFDLTSRCTLNS++ WY +ARK NQTAIP+++G
Sbjct:   159 SIWELEGAERSRDQIPVACKDSVAILFMFDLTSRCTLNSVISWYQQARKSNQTAIPVMVG 218

Query:   210 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT 269
             TKFD+F++LP DLQWTIA+QAR YAKA+ ATLFFSSA++NINVNKIFKF+ AKLF+LPWT
Sbjct:   219 TKFDEFIQLPIDLQWTIASQARTYAKALNATLFFSSASYNINVNKIFKFVTAKLFDLPWT 278

Query:   270 VKRNLTIGEPIIDF 283
             V+RNLTIGEPIIDF
Sbjct:   279 VERNLTIGEPIIDF 292

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ASPGD|ASPL0000066888 spgA [Emericella nidulans (taxid:162425)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 102/217 (47%), Positives = 139/217 (64%)

Query:    67 SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYV-GNEQ 124
             + +  P P T       LS T      T  + V +K+ ++GD QIGKTS  VKYV G+  
Sbjct:    93 TQDPQPQPPTSSRPSSGLSGTQKQPAQTTKNSVVIKVGMVGDAQIGKTSLMVKYVEGSWD 152

Query:   125 ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 184
             E  +Q  G+N + KT+ ++   I FSIWD+GG     + +P+ C DAVAILFMFDLT + 
Sbjct:   153 EDYIQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDLTRKS 212

Query:   185 TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244
             TLNSI  WY + R +N+TAIP L+GTK+D FV  P + Q  I+ QA+ +AKAMKA+L FS
Sbjct:   213 TLNSIKEWYRQGRGFNKTAIPFLVGTKYDHFVNFPREDQEEISIQAKRFAKAMKASLIFS 272

Query:   245 SATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPII 281
             S +H+INV KIFK ++AK F+L  T+     IGEP++
Sbjct:   273 STSHSINVQKIFKIVLAKAFDLKCTIPEIENIGEPLL 309

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0031028 "septation initiation signaling cascade" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

POMBASE|SPAC1565.06c spg1 "GTPase Spg1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 95/193 (49%), Positives = 133/193 (68%)

Query:    93 DTDSDLVSLKISLLGDCQIGKTSF-VKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 150
             D   + V++K+ ++GD  IGKTS  V YV G+  E S Q  G+N + KT+ ++   I FS
Sbjct:     3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62

Query:   151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGT 210
             IWD+GG     + +P+ C DAVAILFMFDL+ + TLNSI  WY +AR +N+TA+PILIGT
Sbjct:    63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGT 122

Query:   211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
             K+D F+  P + Q  I  QAR YAKAMKA+L F S +H+INV KIFK ++AK+F+L  T+
Sbjct:   123 KYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTI 182

Query:   271 KRNLTIGEPIIDF 283
                  +G+PI+++
Sbjct:   183 PEIKNVGDPILEY 195

GO:0003924 "GTPase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IC

GO:0005816 "spindle pole body" evidence=IDA

GO:0031028 "septation initiation signaling cascade" evidence=IGI

GO:0033205 "cell cycle cytokinesis" evidence=IMP

GO:0034613 "cellular protein localization" evidence=IMP

GO:0044732 "mitotic spindle pole body" evidence=IDA

DICTYBASE|DDB_G0291269 spg1 "small GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 95/198 (47%), Positives = 134/198 (67%)

Query:    88 FSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYV-GNEQERSLQMAGLNLINKTLMVQGA 145
             F+   DT  + V +K+ ++GD QIGKTS  VKYV G   E  +Q  G+N + KT+ ++G 
Sbjct:     6 FTGSSDTKKNNVVVKVGMVGDSQIGKTSLMVKYVEGTFDEDYIQTLGVNFMEKTISIRGT 65

Query:   146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 205
              I FSIWD+GG     + +P+ C DAVAILFMFDL+ + TLNS+  WY +AR +N+TAIP
Sbjct:    66 EITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNKTAIP 125

Query:   206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
              LIGTKFD F   P + Q  I  QAR +A AMK+ L F S +H+INV KIFK +++K F+
Sbjct:   126 FLIGTKFDVFATKPIEEQEEITKQARKFASAMKSPLIFCSTSHSINVQKIFKIVISKAFD 185

Query:   266 LPWTVKRNLTIGEPIIDF 283
             L  T+ + + +GEP++++
Sbjct:   186 LNCTIPKVVGVGEPLLEY 203

GO:0005813 "centrosome" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007096 "regulation of exit from mitosis" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000004529 TEM1 "GTP-binding protein of the Ras family involved in M-phase termination" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 76/185 (41%), Positives = 113/185 (61%)

Query:    99 VSLKISLLGDCQIGKTSF-VKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 156
             V +++ L+GD Q+GKTS  VKYV N  ++   Q  G+N + + + ++   I FSI D+GG
Sbjct:    19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78

Query:   157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
                  + +PIA   +  I+F+FDLT   TL+SI  WY +A   N +AIPIL+GTK+D  +
Sbjct:    79 QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLI 138

Query:   217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTI 276
              L P+ Q  I+  +  YA+ M A L F S   +IN+ KIFK  +AK+FNL  T+     I
Sbjct:   139 DLDPEYQEQISRTSMKYAQVMNAPLIFCSTAKSINIQKIFKIALAKIFNLTLTIPEINEI 198

Query:   277 GEPII 281
             G+P++
Sbjct:   199 GDPLL 203

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005816 "spindle pole body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007096 "regulation of exit from mitosis" evidence=TAS

GO:0051301 "cell division" evidence=IEA

SGD|S000001889 SEC4 "Rab family GTPase essential for exocytic secretion and autophagy" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 57/189 (30%), Positives = 95/189 (50%)

Query:    79 AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLI 136
             +GL  +S +  +G   DS    +KI L+GD  +GK+   V++V ++   S +   G++  
Sbjct:     2 SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58

Query:   137 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 195
              KT+ + G ++   +WD  G  R F  +  A  + A+ I+ ++D+T   T  +I  W+  
Sbjct:    59 IKTVDINGKKVKLQLWDTAGQER-FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT 117

Query:   196 ARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254
               +  N  A  +L+G K D   R+        A Q  A AK +      SSA ++ NVN+
Sbjct:   118 VNEHANDEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKNDDNVNE 171

Query:   255 IFKFIMAKL 263
             IF F +AKL
Sbjct:   172 IF-FTLAKL 179

GO:0007107 "membrane addition at site of cytokinesis" evidence=IEP;IGI;IMP

GO:0006914 "autophagy" evidence=IGI;IMP

GO:0031982 "vesicle" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA;TAS

GO:0007121 "bipolar cellular bud site selection" evidence=TAS

GO:0030478 "actin cap" evidence=TAS

GO:0030133 "transport vesicle" evidence=TAS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IMP

GO:0006893 "Golgi to plasma membrane transport" evidence=IMP

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006887 "exocytosis" evidence=IEA;IDA

GO:0031321 "ascospore-type prospore assembly" evidence=IMP

GO:0000131 "incipient cellular bud site" evidence=IDA

GO:0000910 "cytokinesis" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IDA

FB|FBgn0015793 Rab19 "Rab19" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 50/167 (29%), Positives = 82/167 (49%)

Query:   102 KISLLGDCQIGKTSFV-KY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
             KI L+GDC  GKT  V ++  GN  ER     G++   KT+ V+G +I   IWD  G  R
Sbjct:    23 KIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQIWDTAGQER 82

Query:   160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRL 218
                      + A  +L ++D+T R + +++  W  E R++  +  + IL+G K D   + 
Sbjct:    83 FRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQR 142

Query:   219 PPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 263
               D +     +AR   + +   LF   +SA  N+NV   F+ +  +L
Sbjct:   143 EVDFE-----EARQMCQYIPEILFVMETSAKENMNVEDAFRCLANEL 184

GO:0005525 "GTP binding" evidence=ISS

GO:0005097 "Rab GTPase activator activity" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

FB|FBgn0086913 Rab26 "Rab26" [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 50/122 (40%), Positives = 69/122 (56%)

Query:    97 DLVSLKISLLGDCQIGKTSF-VKY-VGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
             D V+ K  LLGD  +GKTSF VKY  G  +  S     G+ L NK ++V G R+   IWD
Sbjct:   187 DTVNHKTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWD 246

Query:   154 VGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTK 211
               G  R F  V  A  +DA A+L ++D+T++ T ++I  W  E R++ Q  + I LIG K
Sbjct:   247 TAGQER-FRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNK 305

Query:   212 FD 213
              D
Sbjct:   306 AD 307

GO:0003924 "GTPase activity" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=ISS

GO:0031226 "intrinsic to plasma membrane" evidence=ISS

GO:0017157 "regulation of exocytosis" evidence=ISS

GO:0031982 "vesicle" evidence=ISS

DICTYBASE|DDB_G0291738 rabG1 "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 48/174 (27%), Positives = 83/174 (47%)

Query:    95 DSDLVSLKISLLGDCQIGKTSFV-KYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSI 151
             DSD+   KI L+GD  +GKTS + ++    N QE S+ M  ++  NK + + G      I
Sbjct:     3 DSDV--FKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQI 60

Query:   152 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGT 210
             WD  G  R         + A  +L  +D+T + T N++  W  E +++    +  +L+G 
Sbjct:    61 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGN 120

Query:   211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
             K D       D +   A+ A+ YA  +      +SAT  +NV + F  +  +++
Sbjct:   121 KCD-----LEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIY 169

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-108
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-23
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-23
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-17
pfam00071	162	pfam00071, Ras, Ras family	5e-15
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-13
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	7e-13
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-12
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-12
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-12
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	9e-12
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-11
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-11
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-11
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-10
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-10
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	4e-10
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-09
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-09
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-09
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-09
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-09
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	8e-09
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-08
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-08
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	5e-08
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	8e-08
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	9e-08
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-07
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-07
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-07
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-07
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	7e-07
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	7e-07
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	8e-07
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	9e-07
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-06
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-06
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-06
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-06
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-06
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-06
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-06
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	5e-06
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-05
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-05
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-05
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-05
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-05
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-05
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	8e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-04
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	8e-04
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	8e-04

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score =  312 bits (800), Expect = e-108
 Identities = 108/182 (59%), Positives = 133/182 (73%), Gaps = 2/182 (1%)

Query: 101 LKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           LKI LLGD QIGKTS  VKYV  E  E  +Q  G+N + KT+ ++G  I FSIWD+GG  
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
              + +P+ CKDAVAILFMFDLT + TLNSI  WY +AR +N+TAIPIL+GTK+D F  L
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADL 120

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGE 278
           PP+ Q  I  QAR YAKAMKA L F S +H+INV KIFKF++AK+F+LP T+   LT+GE
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKVFDLPLTIPEILTVGE 180

Query: 279 PI 280
           PI
Sbjct: 181 PI 182

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 91.3 bits (227), Expect = 3e-23
 Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG-DS 158
           K+ ++GD   GK+S + + VG E     L++ G  L   TL V G     +IWD GG + 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLN---SIVGWYSEARKWNQTAIP-ILIGTKF 212
             F+H  I  K A AIL ++DLT R +LN    ++ W    RK     IP IL+G K 
Sbjct: 61  LKFEH-IIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLG-GKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 92.1 bits (230), Expect = 4e-23
 Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 10/163 (6%)

Query: 101 LKISLLGDCQIGKTSFVK-YVGNEQERSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI L+GD  +GKTS +  +V N+   + +   G++  +KT+ V G ++   IWD  G  
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
           R F  +     + A   + ++D+T+R +  ++  W +E +++    IPI L+G K D   
Sbjct: 61  R-FRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSD--- 116

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
            L  + Q +   +A+ +AK      F +SA    NV++ F+ +
Sbjct: 117 -LEDERQVSTE-EAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 76.1 bits (188), Expect = 5e-17
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 16/165 (9%)

Query: 102 KISLLGDCQIGKTSFV-KYVGN----EQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           K+ LLG+ ++GKTS V +YV N    + E + Q +      KT+ + G RI  +IWD  G
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQAS---FFQKTVNIGGKRIDLAIWDTAG 58

Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI-GTKFDDF 215
             R     PI  +DA   + ++D+T   +   +  W  E ++     I ++I G K  D 
Sbjct: 59  QERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNK-IDL 117

Query: 216 VRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIFKFI 259
            R     Q  ++  +A  YAK++ A  F +SA     + ++F  +
Sbjct: 118 ER-----QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 70.6 bits (174), Expect = 5e-15
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+GD  +GK+S + ++  N+  E  +   G++   KT+ V G  +   IWD  G  R
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 160 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 217
            F  +     + A   L ++D+TSR +  ++  W  E  +     +PI L+G K D    
Sbjct: 61  -FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCD---- 115

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           L      +   +  A AK +      +SA  N NV + F
Sbjct: 116 LEDQRVVSTE-EGEALAKELGLPFMETSAKTNENVEEAF 153

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 20/175 (11%)

Query: 101 LKISLLGDCQIGKTSFVK-YVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI L+GD  +GK+S +  +   +  E+     G++   KT+ V G R+   IWD  G  
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 159 R------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTK 211
           R      S+       + AV  L ++D+T+R +  ++  W  E R++    + I L+G K
Sbjct: 61  RFRSITSSY------YRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNK 114

Query: 212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
            D    L    Q +   +A A+A+      F +SA  N NV + F+ +  ++   
Sbjct: 115 SD----LEEQRQVSR-EEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 65.8 bits (160), Expect = 7e-13
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 19/203 (9%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARI 147
           SSG  +  DL S KI L+GD  +GK+S  V ++ +  E      G++   K L V G R+
Sbjct: 4   SSGQSSGYDL-SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRL 62

Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKW--NQTAI 204
             +IWD  G  R         ++A  I+ ++D+T R T  ++   W  E   +  NQ  +
Sbjct: 63  KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV 122

Query: 205 PILIGTKFDDFVRLPPDLQWTIA-TQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
            +L+G K D       + +  ++  +  A AK         SA    NV + F+ +  K+
Sbjct: 123 KMLVGNKVDR------ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176

Query: 264 FNLP-------WTVKRNLTIGEP 279
             +P         VKRN+   +P
Sbjct: 177 MEVPSLLEEGSTAVKRNILKQKP 199

Length = 211

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 8/167 (4%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
             K+ LLGD  +GK+S V ++V NE  E      G   + +T+ +    + F IWD  G 
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
            R     P+  + A A + ++D+TS  +      W  E ++      +  L G K D   
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKAD--- 117

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
            L    Q +   +A+ YA         +SA    NVN++F  I  KL
Sbjct: 118 -LESKRQVSTE-EAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 101 LKISLLGDCQIGKTSFVK-YVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 158
           LKI L+GD  +GK+S +  +  +  +  L    G++   KT+ V G ++  +IWD  G  
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFV 216
           R         + A  ++ ++D+T R T +++  W +E   +  N  A+ +L+G K D   
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
           R           + + +A+        +SA   I V + F+
Sbjct: 121 REVT------REEGQKFARKHNMLFIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 63.4 bits (154), Expect = 5e-12
 Identities = 47/200 (23%), Positives = 74/200 (37%), Gaps = 16/200 (8%)

Query: 99  VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLI-NKTLMVQGARIAFSIWDVGG 156
              KI +LGD  +GKT+ + + VG+E          NL   KT+      I   +WD  G
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
                   P   + A  IL ++D T R  +      W  E R+     +PI L+G K D 
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 215 FVR----------LPPDLQWTIATQARAYAKAMKATLFFSSA--THNINVNKIFKFIMAK 262
           F            L  ++   +        +     L  +SA      NVN++FK ++ K
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 263 LFNLPWTVKRNLTIGEPIID 282
           L      +     + +    
Sbjct: 184 LLEEIEKLVLKNELRQLDRL 203

Length = 219

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 102 KISLLGDCQIGKTSFVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           KI L+GD  +GKT  V+    G   ER     G++   KTL +QG R+   IWD  G  R
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFD 213
                    + A   +  +D+T R +  S+  W  E  K+  + +  +LIG K D
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCD 119

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 10/159 (6%)

Query: 101 LKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           +KI LLGD  +GK+  V+   +   + + L    L L       +G  I    WD  G  
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R           A A + +FD+T + T  ++  WY E R++      I++  K       
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKI------ 114

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
             DL  ++  +   +A+     L++ SA    NV K+F+
Sbjct: 115 --DLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQ 151

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           K+ L+GD  +GKT   V++          +   G+   NK + V G ++   IWD  G  
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 213
           R F  V  A  +DA A+L ++D+T++ + ++I  W +E  ++ Q+ + I L+G K D
Sbjct: 62  R-FRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKAD 117

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+  LGD  +GKTS + +++ +  +   Q   G++ ++KT+ V    +   +WD  G  R
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVRL 218
               +P   +D+   + ++D+T+R + ++   W  + R +     I +L+G K D    L
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTD----L 117

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
               Q +   +    AK   A    +SA    NV ++FK I   L
Sbjct: 118 SDKRQVSTE-EGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ ++G+  +GKTSF+    ++   S  +   G++   KT+     RI   IWD  G  
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 217
           R         + A+  + M+D+T+  + N++  W ++ + ++   A  IL+G K D    
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD---- 117

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
              D +   A + R  A  +    F +SA  NINV ++F+
Sbjct: 118 -MEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFE 156

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 15/174 (8%)

Query: 102 KISLLGDCQIGKTSFVK-YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           KI L+GD Q GKT+ ++ +  +    +           +  V   RI  S+WD  G S  
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSG-SPY 61

Query: 161 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD----- 213
           +D+V P++  D+ A+L  FD++   TL+S++  W  E R++      +L+G K D     
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDL 121

Query: 214 -DFVRLPPDLQWTIAT-QARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 263
                L    Q  ++  Q R  AK + A  +   S+ T   +V  +F+  MA L
Sbjct: 122 STLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE--MATL 173

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI L+GD  +GK++ + ++  NE    S    G+    +TL V+G  +   IWD  G  
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI-GTKFD-DFV 216
           R         + AV  L ++D+T R T +++  W  E R    + I I++ G K D + +
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
           R   +         +A A+    +   +SA    NV K F+ I+ +++++
Sbjct: 133 RSVAE------EDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176

Length = 216

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            ++ L+GD  +GKT  + ++  NE   S +   G++   KT+ V G ++   IWD  G  
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 217
           R         + A  I  ++D++S  +   I+ W S+  ++    +  ILIG K D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD---- 116

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
                +     Q    AK      F +SA  N N+ + F
Sbjct: 117 -EEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ ++GD  +GK+S  +++  N      +   G++   +T+ + G R+   IWD  G  R
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219
                    +    ++ ++D+T+  +  ++  W  E  +       +L+G K DD     
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD----- 122

Query: 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF-----KFIMAKLFNLP 267
           P+ +      A  +A  M  +LF +SA  NINV ++F       + AK  NL 
Sbjct: 123 PERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLA 175

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 10/167 (5%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI L+G+  +GKT  V+          Q A  G++ + KT+ ++G +I   IWD  G  
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A A++  +D+T   +   +  W  E  ++ N   I IL+G K D    
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL--- 124

Query: 218 LPPDLQWTIATQ-ARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                +  ++ Q A  ++ A       +SA  + NV K+F  +  +L
Sbjct: 125 ---AERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 19/168 (11%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQ----------GARIA 148
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++              R+ 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP--I 206
             +WD  G  R         +DA+  L MFDLTS  +  ++  W S+ +       P  +
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254
           LIG K D      PD +     QAR  A       F +SA    NV K
Sbjct: 125 LIGNKAD-----LPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 25/176 (14%)

Query: 102 KISLLGDCQIGKT--SFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           KI ++GD  +GKT  ++    G   ER+    G++   +T+ + G RI   +WD  G  R
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 160 SFDH--VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKF 212
            F    V    ++  A++F++D+T+  + +S+  W  E     Q ++P     IL+G K 
Sbjct: 64  -FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECE---QHSLPNEVPRILVGNKC 119

Query: 213 D--DFVRLPPDLQWTIATQARAYAKAMKATLFFSSA---THNINVNKIFKFIMAKL 263
           D  + +++P DL       A+ +A A    LF +SA   + N +V  IF  +  KL
Sbjct: 120 DLREQIQVPTDL-------AQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 11/165 (6%)

Query: 102 KISLLGDCQIGKTS-FVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+GD  +GK+   +++  +    S +   G++   +T+ + G +I   IWD  G  R
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64

Query: 160 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
            F  +  +  + A+ I+ ++D+T   +  +I  W     +  ++    +L+G K D    
Sbjct: 65  -FRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCD---- 119

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
           +      +   +  A A+        +SA  NINV + F   +AK
Sbjct: 120 MEEKRVVSKE-EGEALAREYGIKFLETSAKANINVEEAF-LTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 102 KISLLGDCQIGKTSFVKYV--GNEQERSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS 158
           ++ ++GD  +GK+S +K    G   E S    G++  ++ + ++ G RI   +WD  G  
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP--ILIGTKFDDF 215
           R F  +  +  +++V +L +FD+T+R +   +  W  EAR   Q   P  IL+G K D  
Sbjct: 64  R-FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD-- 120

Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
             L    Q T   +A   AK +      +SA    NV + F+ +  +++  
Sbjct: 121 --LESQRQVTRE-EAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYER 168

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 11/166 (6%)

Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           +KI ++GD  +GKT   + Y  N+          +  +  + V G ++   +WD  G   
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQE- 59

Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD---- 213
            +D + P++       L  F + S  +  ++   WY E + +      IL+GTK D    
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDD 119

Query: 214 -DFVRLPPDLQWTIAT-QARAYAKAMKATLFFS-SATHNINVNKIF 256
            + ++     Q  I   +    AK + A  +   SA     + ++F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 14/120 (11%)

Query: 102 KISLLGDCQIGKTSFVK-YVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+GD   GKT+FVK ++  E E+  +   G+ +          +I F++WD  G  +
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 160 SFDHVPIACKDAVAI-----LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 213
                    +D   I     + MFD+TSR T  ++  W+ +  +  +  IPI L G K D
Sbjct: 62  -----FGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD 115

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 101 LKISLLGDCQIGKTSFVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           LK  L+GD  +GK   +  +  G+ +       G++    T+++ G R+   +WD  G  
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R         + A  I+ ++D+T+R + + I  W  E  +       IL+G       RL
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGN------RL 120

Query: 219 PPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIF 256
               +  +AT QA+AYA+    T F  S   N N+ + F
Sbjct: 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 101 LKISLLGDCQIGKTSFVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           +K+  +G+  +GK+  +K    G    + L   G++   K + V+   +  + +D+ G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT------AIPILIGTKF 212
              +      KD   +L ++D+T R +  ++  W  E ++           + ++   K 
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           D               + R +A++     F +SA     VN++F
Sbjct: 121 DLTKHRAVSED-----EGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 132 GLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG 191
           G++ ++KTL +    +   +WD  G  R    +P   +D+ A + ++D+T+R +  +   
Sbjct: 14  GIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK 73

Query: 192 WYSEA-RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 250
           W  +   +  +  I  L+G K D       DL+     +    A+        +SA    
Sbjct: 74  WIQDILNERGKDVIIALVGNKTD-----LGDLRKVTYEEGMQKAQEYNTMFHETSAKAGH 128

Query: 251 NVNKIFKFIMAKLFNL 266
           N+  +FK I AKL NL
Sbjct: 129 NIKVLFKKIAAKLPNL 144

Length = 176

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 12/179 (6%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           L++ ++G   +GKTS ++   ++   E      G++   KT+ ++G +I   IWD  G  
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 159 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R F+ +  A  + A  I+ ++D+T + T + +  W     K+ ++ A  +L+G K D   
Sbjct: 61  R-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD--- 116

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF-KFIMAKLFNLPWTVKRN 273
               D + T   Q   +A+ +    F  +SA  N NV++IF K +   L  +P  + RN
Sbjct: 117 -CETDREIT-RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRN 173

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 153
            ++   K+ L+GD  +GKT+FVK    G  +++ +   G+ +           I F++WD
Sbjct: 5   DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWD 64

Query: 154 VGGDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-L 207
             G       R   ++   C    AI+ MFD+TSR T  ++  W+ +  +  +  IPI L
Sbjct: 65  TAGQEKFGGLRDGYYIKGQC----AII-MFDVTSRITYKNVPNWHRDIVRVCEN-IPIVL 118

Query: 208 IGTKFD 213
           +G K D
Sbjct: 119 VGNKVD 124

Length = 215

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 13/164 (7%)

Query: 105 LLGDCQIGKTSFV-KYVGNEQERSLQMAG--LNLINKTLMVQGARIAFSIWDVGG----- 156
           ++G   +GK+S +   +G E      + G   +       +   ++   + D  G     
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61

Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
                +   +  + A  IL + D T R +            +     I IL+G K D   
Sbjct: 62  GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPI-ILVGNKID--- 117

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 260
            L       +              +F  SA     V+++F+ ++
Sbjct: 118 LLEEREVEELLRLEELAKIL-GVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 15/169 (8%)

Query: 101 LKISLLGDCQIGKTS----FVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDV 154
           +K+ ++G+  +GK+S    FVK +  +  +  +  G++ + K + ++     +   +WD 
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYK--KTIGVDFLEKQIFLRQSDEDVRLMLWDT 58

Query: 155 GGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213
            G    FD +  A  + A A + +F  T R +  +I  W  +          +L+ TK D
Sbjct: 59  AG-QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKID 117

Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
               L      T   +A A AK ++  LF +S   + NV ++F+++  K
Sbjct: 118 ----LLDQAVIT-NEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 12/166 (7%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLIN-----KTLMVQGARIAFSIWDV 154
           +K+ +LG   +GKTS V +YV     R L     N I      K ++V    +   IWD 
Sbjct: 1   VKVVMLGKESVGKTSLVERYV---HHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDT 57

Query: 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 213
            G  R      I  + A A +  +DLT   +      W  E +   +    I L GTK  
Sbjct: 58  AGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKS- 115

Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
           D +     L+       + +A  +KA  F +S+    NV+++F+ +
Sbjct: 116 DLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 48.1 bits (114), Expect = 8e-07
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 99  VSLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  KI ++GD Q GKT+ +     +   E  +     N    +  +   RI  S+WD  G
Sbjct: 4   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 62

Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD- 213
            S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D 
Sbjct: 63  -SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121

Query: 214 -----DFVRLPPDLQWTIA-TQARAYAKAMKATLFFS-SATHNIN-VNKIF 256
                  V L    Q  ++  Q    AK + A  +   SA  + N V  IF
Sbjct: 122 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 172

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 14/172 (8%)

Query: 101 LKISLLGDCQIGKTSFVKYV---GNEQERSLQM-AGLNLINKTLMV--QGARIAFSIWDV 154
            + +++GD  +GK++ V+     G   +++  M  G +L+ KT+ V      +   I+D 
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKF 212
            G     D V    +    +  ++D+T+  + N+   W +  R  +       +L+G K 
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
           D   R   D     A QA+A A+A     + +SA   +     F  + A+ F
Sbjct: 121 DLTDRREVD-----AAQAQALAQANTLKFYETSAKEGVGYEAPFLSL-ARAF 166

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 102 KISLLGDCQIGKTSFVK-YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           KI ++GD Q GKT+ +  +  +    S           +  +   RI  ++WD  G S  
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSG-SSY 61

Query: 161 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 213
           +D+V P+A  D+ A+L  FD++   TL+S++  W  E +++   A  +L+G K D
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLD 116

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V G  +   IWD  G  
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 213
           R F  V  +  + A   L ++D+TSR + N++  W ++AR   +   + IL+G K D
Sbjct: 61  R-FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKD 116

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           LK+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +   IWD  G  
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 159 R 159
           R
Sbjct: 66  R 66

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 18/170 (10%)

Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           LK  L+GD  +GKTS  V Y  N           +  +  ++V G  +   + D  G   
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD- 59

Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVR 217
            FD + P+   D    L  F + +  +  +I   W  E RK N  A  IL+GT+ D  +R
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD--LR 117

Query: 218 LPPDLQWTIAT---------QARAYAKAMKATLFF--SSATHNINVNKIF 256
              ++   +A          +A+A A+ + A  +   S+ T   N+ ++F
Sbjct: 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK-NLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           KI L+GD  +GK++ + ++  NE    S    G+    +T+ + G  I   IWD  G  R
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 160 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 217
            +  +  A  + AV  L ++D+T + T  ++  W  E R    + I I L+G K D    
Sbjct: 65  -YRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSD---- 119

Query: 218 LPPDLQWTIATQ-ARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
           L       + T+ A+A+A+    +   +SA    NV + FK ++ +++
Sbjct: 120 LRHLRA--VPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGD 157
           +KI +LGD   GKTS ++    E   +   Q  GL+  ++ + + G+  +   +WD+GG 
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP----ILIGTKFD 213
                 +      A A+  ++D+T+  +  ++  W S  +K N+ +      +L+G K D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
               L  + Q T    AR +A+       F SA     V   F+ I A+L  +
Sbjct: 121 ----LEHNRQVTAEKHAR-FAQENDMESIFVSAKTGDRVFLCFQRIAAELLGV 168

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 153
            D  S K+ ++GD   GKT+FVK    G  +++     G+ +          +I F  WD
Sbjct: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68

Query: 154 VGGDSRSFDHVPIACKDAVAI-----LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-L 207
             G  + F       +D   I     + MFD+T+R T  ++  W+ +  +  +  IPI L
Sbjct: 69  TAGQEK-FG----GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVL 122

Query: 208 IGTKFD 213
            G K D
Sbjct: 123 CGNKVD 128

Length = 219

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 19/167 (11%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGGD 157
           LK+ +LGD  +GKTS + +YV N++  +   A  G + + K + V    +   IWD  G 
Sbjct: 1   LKVIILGDSGVGKTSLMNQYV-NKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQ 59

Query: 158 SRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGTK 211
            R F  + +A  + A   + ++D+T+  +  S+  W  E    A   +    P +++G K
Sbjct: 60  ER-FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNK 118

Query: 212 FDDFVRLPPDLQWTIAT-QARAYAKAMK-ATLFFSSATHNINVNKIF 256
            D       + +  ++T +A+ + K+      F +SA   INV++ F
Sbjct: 119 IDL------EEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAF 159

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 16/120 (13%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           LK+ LLGD  +GKTS + +Y+    + ++   G     K    Q      SIWD  G  +
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR------KWNQTAIPILIGTKFD 213
                 + C+ A A++  +D+++  +L  +     E R        N+  +  ++G K D
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEEL-----EDRFLGLTDTANEDCLFAVVGNKLD 111

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 7/169 (4%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ ++GD  +GKT  + ++  +  +++ +   G++   +   V G   +  +WD  G  R
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVR 217
                    + A AI+ +FDLT   +L     W  +A K N   + +  L+GTK D    
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKD---L 118

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
             P     +   A   A+ MKA  +  SA    NV   F  + +  F L
Sbjct: 119 SSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFEL 167

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK+  +    ++   E  +   G++   +T+ + G  +   IWD  G  
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 159 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R F  +  +  + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D   
Sbjct: 63  R-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD--- 118

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
               D +    T+A+ +A  +      +SA +  NV + F  +  ++
Sbjct: 119 --LTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 98  LVSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +V  K+ L+GD Q GKT+ ++ +  +   E  +     N     L  +  R+  S+WD  
Sbjct: 11  VVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTS 69

Query: 156 GDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFD 213
           G S  +D+V P+   D+ A+L  FD++     +S +  W +E   +  +   +LIG K D
Sbjct: 70  G-SPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTD 128

Query: 214 ------DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFK 257
                   + L    Q  I+  Q  A AK + A  +   S+ T   +++ IF+
Sbjct: 129 LRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFR 181

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 12/160 (7%)

Query: 102 KISLLGDCQIGKTSFVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K  ++GD  +GK+  +     ++         G+    + + V G +I   IWD  G  R
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 160 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD-DFV 216
            F  V  +  + A   L ++D+T R T N +  W ++AR   N   +  LIG K D +  
Sbjct: 64  -FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           R   D+ +    +A+ +A          SA    NV   F
Sbjct: 123 R---DVTY---EEAKQFADENGLLFLECSAKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 138 KTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEA 196
           + + + G +I   IWD  G   SF  +  +  + A   L ++D+T R T N +  W  +A
Sbjct: 44  RMITIDGKQIKLQIWDTAG-QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA 102

Query: 197 RKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVN 253
           R+ + + + I LIG K D    L    + +   +  A+A+  +  L F  +SA    NV 
Sbjct: 103 RQHSNSNMTIMLIGNKCD----LESRREVS-YEEGEAFAR--EHGLIFMETSAKTASNVE 155

Query: 254 KIF 256
           + F
Sbjct: 156 EAF 158

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 11/128 (8%)

Query: 139 TLMVQGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEA 196
            + V G  +   +WD  G    +D + P++  D    L  F + S  +  ++   WY E 
Sbjct: 38  DVEVDGKPVELGLWDTAG-QEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV 96

Query: 197 RKWNQTAIPILIGTKFD-----DFVRLPPDLQWTIAT--QARAYAKAMKATLFFS-SATH 248
           + +      IL+GTK D       +      +    T  Q +A AK + A  +   SA  
Sbjct: 97  KHFCPNVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALT 156

Query: 249 NINVNKIF 256
              V ++F
Sbjct: 157 QEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 25/179 (13%)

Query: 101 LKISLLGDCQIGKTSFVK-YVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDV--- 154
            K+ ++GD  +GKTS +K YV     +  +   G++   K +      +    +WD+   
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 155 ---GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY----SEARKWNQTAIP-I 206
              GG +R +       K AV  + +FD+T   T  +++ W     S+    N   IP +
Sbjct: 61  ERFGGMTRVYY------KGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPAL 114

Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLF 264
           L+  K D    L  +       Q   + K      +F +SA  NIN+ +  +F++  + 
Sbjct: 115 LLANKCD----LKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL 169

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 14/165 (8%)

Query: 102 KISLLGDCQIGKTS-FVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           KI ++GD  +GK++   + +GN+            N +   +   G    F++ D  G  
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILI-GTKFD-D 214
                  +  +   + L +FD+          +     E     ++ +PI++ G K D  
Sbjct: 63  DYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLR 122

Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
             +L   +          +AK     +   SA    N++  FK +
Sbjct: 123 DAKLKTHVA-------FLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 19/169 (11%)

Query: 106 LGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----- 158
           +GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G       
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R   ++   C    AI+ MFD+T+R T  ++  W+ +  +  +    +L G K D   R 
Sbjct: 61  RDGYYIQGQC----AII-MFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR- 114

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
                  +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 115 ------KVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 37/173 (21%)

Query: 101 LKISLLGDCQIGKTSFV------KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 154
           LK+ ++G+ + GK++ V       YV  E     +        K ++V G      I D 
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRF------KKEVLVDGQSHLLLIRDE 54

Query: 155 GGDSRSFDHVPIA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGT 210
           GG        P A       A++F+F L    +  ++   Y +   + N + IP IL+GT
Sbjct: 55  GG-------APDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGT 107

Query: 211 KFDDFV-----RLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFK 257
           +  D +     R+  D       +AR     MK   ++ + AT+ +NV ++F+
Sbjct: 108 Q--DAISASNPRVIDD------ARARQLCADMKRCSYYETCATYGLNVERVFQ 152

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++GD  +GK+  +    +++ + +     G+    + + +    I   IWD  G  
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG-Q 65

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 213
            SF  +  +  + A   L ++D+T R T N +  W  +AR+  N     +LIG K D
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Length = 210

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG1673	205	consensus Ras GTPases [General function prediction	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.98
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.98
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.98
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.98
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.98
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.98
PLN03110	216	Rab GTPase; Provisional	99.98
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
PLN03108	210	Rab family protein; Provisional	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
PLN03118	211	Rab family protein; Provisional	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.96
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.95
PRK12299	335	obgE GTPase CgtA; Reviewed	99.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.94
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.94
PTZ00099	176	rab6; Provisional	99.94
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.94
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
PRK12297	424	obgE GTPase CgtA; Reviewed	99.93
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.93
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.93
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.92
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.92
PRK12298	390	obgE GTPase CgtA; Reviewed	99.91
PRK12296	500	obgE GTPase CgtA; Reviewed	99.91
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.91
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.91
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.91
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.91
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.91
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.91
COG1100	219	GTPase SAR1 and related small G proteins [General	99.91
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.91
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.9
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.9
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.9
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.9
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.89
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.88
PRK15494	339	era GTPase Era; Provisional	99.88
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.87
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.87
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.87
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.86
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.86
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.85
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK04213	201	GTP-binding protein; Provisional	99.85
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.85
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.85
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.84
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.84
COG0536	369	Obg Predicted GTPase [General function prediction	99.84
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.84
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.84
PRK03003	472	GTP-binding protein Der; Reviewed	99.83
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.83
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.83
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.83
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.82
cd00881	189	GTP_translation_factor GTP translation factor fami	99.82
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.81
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.81
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.81
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.8
PRK00089	292	era GTPase Era; Reviewed	99.8
PRK11058	426	GTPase HflX; Provisional	99.8
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.79
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.78
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.78
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.78
PRK00093	435	GTP-binding protein Der; Reviewed	99.78
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.78
PRK00093	435	GTP-binding protein Der; Reviewed	99.78
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.78
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.77
CHL00189	742	infB translation initiation factor 2; Provisional	99.77
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.77
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.76
PRK05306	787	infB translation initiation factor IF-2; Validated	99.76
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.75
COG1159	298	Era GTPase [General function prediction only]	99.75
PRK05433	600	GTP-binding protein LepA; Provisional	99.74
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.74
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.73
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.73
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.73
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.72
PRK12317	425	elongation factor 1-alpha; Reviewed	99.72
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.72
PRK10218	607	GTP-binding protein; Provisional	99.7
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.7
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.7
COG2229	187	Predicted GTPase [General function prediction only	99.69
COG1160	444	Predicted GTPases [General function prediction onl	99.69
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.68
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.68
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.68
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.68
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.66
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.66
COG0486	454	ThdF Predicted GTPase [General function prediction	99.66
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.66
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.66
PRK04004	586	translation initiation factor IF-2; Validated	99.65
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.62
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.59
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.59
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.59
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.58
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.58
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.58
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.57
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.57
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.55
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.55
PRK12735	396	elongation factor Tu; Reviewed	99.54
COG1084	346	Predicted GTPase [General function prediction only	99.53
PRK12736	394	elongation factor Tu; Reviewed	99.53
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.51
PRK09602	396	translation-associated GTPase; Reviewed	99.5
PLN00043	447	elongation factor 1-alpha; Provisional	99.48
PRK13351	687	elongation factor G; Reviewed	99.48
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.48
COG0218	200	Predicted GTPase [General function prediction only	99.48
COG1163	365	DRG Predicted GTPase [General function prediction	99.47
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.47
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.46
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.45
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.44
COG2262	411	HflX GTPases [General function prediction only]	99.44
CHL00071	409	tufA elongation factor Tu	99.44
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.43
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.43
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.42
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.42
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.4
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.4
PLN03126	478	Elongation factor Tu; Provisional	99.4
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.4
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.38
PRK00049	396	elongation factor Tu; Reviewed	99.38
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.36
PTZ00141	446	elongation factor 1- alpha; Provisional	99.36
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.35
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.35
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.35
PLN03127	447	Elongation factor Tu; Provisional	99.33
KOG0090	238	consensus Signal recognition particle receptor, be	99.33
PRK13768	253	GTPase; Provisional	99.3
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.29
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.28
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.27
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.27
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.25
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.24
PRK14845	1049	translation initiation factor IF-2; Provisional	99.24
PRK12740	668	elongation factor G; Reviewed	99.23
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.21
PRK12739	691	elongation factor G; Reviewed	99.2
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.18
PRK09866	741	hypothetical protein; Provisional	99.18
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.18
PTZ00258	390	GTP-binding protein; Provisional	99.15
KOG1145	683	consensus Mitochondrial translation initiation fac	99.14
COG3596	296	Predicted GTPase [General function prediction only	99.14
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.13
PRK00007	693	elongation factor G; Reviewed	99.13
PRK09601	364	GTP-binding protein YchF; Reviewed	99.1
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.08
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.07
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.04
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.03
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.02
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.96
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.94
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.91
PRK07560	731	elongation factor EF-2; Reviewed	98.91
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.9
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.9
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.9
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.88
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.85
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.85
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.84
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.81
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.78
PTZ00416	836	elongation factor 2; Provisional	98.77
PRK12289	352	GTPase RsgA; Reviewed	98.75
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.75
PRK00098	298	GTPase RsgA; Reviewed	98.74
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.73
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.72
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.71
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.7
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.68
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.68
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.67
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.64
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.64
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.64
PRK12288	347	GTPase RsgA; Reviewed	98.62
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.61
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.6
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.58
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.55
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.55
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.48
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.46
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.42
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.42
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.41
KOG0410	410	consensus Predicted GTP binding protein [General f	98.41
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.37
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.35
PRK13796	365	GTPase YqeH; Provisional	98.34
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.33
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.32
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.3
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.29
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.22
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.2
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.18
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.14
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.14
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.14
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.11
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.11
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.1
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.1
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.08
KOG2486	320	consensus Predicted GTPase [General function predi	98.07
KOG1143	591	consensus Predicted translation elongation factor	98.07
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.05
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.03
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.01
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.0
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.98
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	97.93
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.92
COG1161	322	Predicted GTPases [General function prediction onl	97.89
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	97.87
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.83
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.82
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.78
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.77
PRK10416	318	signal recognition particle-docking protein FtsY;	97.77
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.77
KOG0467	887	consensus Translation elongation factor 2/ribosome	97.72
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.71
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.71
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	97.7
PRK01889	356	GTPase RsgA; Reviewed	97.7
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.65
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.64
PRK14974	336	cell division protein FtsY; Provisional	97.63
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.56
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.52
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.5
COG1162	301	Predicted GTPases [General function prediction onl	97.48
PRK13695	174	putative NTPase; Provisional	97.46
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.45
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.39
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.37
KOG0460	449	consensus Mitochondrial translation elongation fac	97.36
cd03112	158	CobW_like The function of this protein family is u	97.34
PRK12289	352	GTPase RsgA; Reviewed	97.32
PRK12288	347	GTPase RsgA; Reviewed	97.32
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.29
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.26
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.23
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.22
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.17
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.17
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.14
PRK13796	365	GTPase YqeH; Provisional	97.13
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.13
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.1
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.07
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.0
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.97
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.96
TIGR00959	428	ffh signal recognition particle protein. This mode	96.95
PRK10867	433	signal recognition particle protein; Provisional	96.93
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.91
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.9
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.86
cd02036	179	MinD Bacterial cell division requires the formatio	96.84
COG3523	1188	IcmF Type VI protein secretion system component Va	96.81
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.78
PRK00098	298	GTPase RsgA; Reviewed	96.77
cd03114	148	ArgK-like The function of this protein family is u	96.73
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.73
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.72
COG1162	301	Predicted GTPases [General function prediction onl	96.65
KOG0464	753	consensus Elongation factor G [Translation, riboso	96.63
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	96.63
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.57
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.53
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	96.52
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	96.5
cd03111	106	CpaE_like This protein family consists of proteins	96.49
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.42
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	96.39
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	96.33
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.17
PRK08118	167	topology modulation protein; Reviewed	96.11
cd03110	179	Fer4_NifH_child This protein family's function is	96.06
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.04
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.0
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	95.98
PRK14738	206	gmk guanylate kinase; Provisional	95.97
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	95.96
PRK07261	171	topology modulation protein; Provisional	95.93
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	95.92
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.9
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	95.81
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	95.8
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.78
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.77
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.76
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.73
KOG2484	435	consensus GTPase [General function prediction only	95.68
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	95.62
KOG0099	379	consensus G protein subunit Galphas, small G prote	95.6
KOG0465	721	consensus Mitochondrial elongation factor [Transla	95.6
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.53
COG0523	323	Putative GTPases (G3E family) [General function pr	95.5
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.36
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	95.3
PRK14737	186	gmk guanylate kinase; Provisional	95.27
smart00382	148	AAA ATPases associated with a variety of cellular	95.24
PRK11537	318	putative GTP-binding protein YjiA; Provisional	95.23
PRK06217	183	hypothetical protein; Validated	95.23
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.14
COG1161	322	Predicted GTPases [General function prediction onl	95.14
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.13
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.09
KOG0780	483	consensus Signal recognition particle, subunit Srp	95.09
PF00004	132	AAA: ATPase family associated with various cellula	95.04
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	95.0
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	94.97
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	94.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	94.89
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	94.82
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	94.79
PRK14530	215	adenylate kinase; Provisional	94.73
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	94.69
PRK03839	180	putative kinase; Provisional	94.67
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	94.66
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	94.59
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	94.56
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	94.55
PF05729	166	NACHT: NACHT domain	94.54
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	94.49
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	94.48
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.46
PRK14532	188	adenylate kinase; Provisional	94.45
PRK08233	182	hypothetical protein; Provisional	94.4
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.38
PRK13949	169	shikimate kinase; Provisional	94.37
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	94.33
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.26
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.25
KOG2423	572	consensus Nucleolar GTPase [General function predi	94.24
PLN02165	334	adenylate isopentenyltransferase	94.22
PRK02496	184	adk adenylate kinase; Provisional	94.15
COG3638	258	ABC-type phosphate/phosphonate transport system, A	94.13
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	94.11
PRK14531	183	adenylate kinase; Provisional	94.08
PHA00729	226	NTP-binding motif containing protein	94.08
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	94.07
PTZ00088	229	adenylate kinase 1; Provisional	94.05
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	94.04
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.01
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	94.0
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	94.0
TIGR00235	207	udk uridine kinase. Model contains a number of lon	93.97
PRK00300	205	gmk guanylate kinase; Provisional	93.92
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	93.92
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	93.9
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	93.86
PF13173	128	AAA_14: AAA domain	93.81
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	93.78
PF13479	213	AAA_24: AAA domain	93.75
PLN03025	319	replication factor C subunit; Provisional	93.7

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-41  Score=272.26  Aligned_cols=166  Identities=22%  Similarity=0.408  Sum_probs=153.5

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      -.+.+||+++|+.|||||+|+ ||..+.|. .+..|+|+||..+++.++|+.++++||||+||++|+.+..+||++|++|
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi   85 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   85 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence            356899999999999999999 99999999 5666999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v  252 (283)
                      |+|||+++++||+++..|+++++++.... +++|||||+||     .+.+.+..+++++|+..++++ ++|+|||++.||
T Consensus        86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl-----~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV  160 (205)
T KOG0084|consen   86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDL-----TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV  160 (205)
T ss_pred             EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeecccc-----HhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence            99999999999999999999999997766 66899999997     344556689999999999999 999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023335          253 NKIFKFIMAKLFNLP  267 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~  267 (283)
                      +++|..|...+....
T Consensus       161 e~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  161 EDAFLTLAKELKQRK  175 (205)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-41  Score=268.78  Aligned_cols=168  Identities=29%  Similarity=0.434  Sum_probs=154.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|+.+||||||+ ||+.+.|.+ ..+|+|..|..+++.+++..++|.||||+|||+|.++.++||++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35799999999999999999 999999995 4679999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceE-EEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++.+||..++.|++++.+..+...+| |||||+||     .+.+.+..+++..+|+..|..|||+|||+|.||++
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL-----~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~  157 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADL-----LERREVEFEEAQAYAESQGLLFFETSAKTGENVNE  157 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhh-----hhcccccHHHHHHHHHhcCCEEEEEecccccCHHH
Confidence            9999999999999999999999987754555 89999997     23466779999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcccc
Q 023335          255 IFKFIMAKLFNLPWTV  270 (283)
Q Consensus       255 lf~~l~~~i~~~~~~~  270 (283)
                      +|..|.+.+.......
T Consensus       158 if~~Ia~~lp~~~~~~  173 (200)
T KOG0092|consen  158 IFQAIAEKLPCSDPQE  173 (200)
T ss_pred             HHHHHHHhccCccccc
Confidence            9999999998876543

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-39  Score=265.15  Aligned_cols=167  Identities=22%  Similarity=0.412  Sum_probs=155.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      .....+||+++|+++||||+|+ +|..+.|. .+..|.|++|..+++.+++..+.+++|||+||++|..+...||++|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            4556899999999999999999 99999999 666699999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          174 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      +++|||+++..||+++..|+..|.++.+..++ +|||||+|+     ...+.+..+.++++|.++|+.|+|+||++|.||
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~-----~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI  162 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDL-----EEKRQVSKERGEALAREYGIKFFETSAKTNFNI  162 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccc-----cccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence            99999999999999999999999999875555 799999997     235666799999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023335          253 NKIFKFIMAKLFNLP  267 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~  267 (283)
                      ++.|..|++.+.++.
T Consensus       163 ~eaF~~La~~i~~k~  177 (207)
T KOG0078|consen  163 EEAFLSLARDILQKL  177 (207)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999998654

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-39  Score=251.95  Aligned_cols=171  Identities=25%  Similarity=0.420  Sum_probs=155.8

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||++||++|||||||+ +|+.+.|....+ |+|+||..+.+.++|.++++.||||+|||+|+.+.+.||++|.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            345799999999999999999 999999996666 699999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCCC--CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      |+|||++.+++|.++..|++++..|..+  .+.++||||+|.     +.++.+..+++.+||+++++-|+|+||++.+||
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk-----es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V  162 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK-----ESERVVDREEGLKFARKHRCLFIECSAKTRENV  162 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc-----hhcccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence            9999999999999999999999999654  334799999994     234666799999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcccccc
Q 023335          253 NKIFKFIMAKLFNLPWTVKR  272 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~~~~~~  272 (283)
                      +..|+.++..|++.|.--+.
T Consensus       163 ~~~FeelveKIi~tp~l~~~  182 (209)
T KOG0080|consen  163 QCCFEELVEKIIETPSLWEE  182 (209)
T ss_pred             HHHHHHHHHHHhcCcchhhc
Confidence            99999999999999854443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-39  Score=257.30  Aligned_cols=168  Identities=23%  Similarity=0.447  Sum_probs=152.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      ....+.+||+++|+.+||||||| ||+.+.|. .+.+|+|+||..+++.+.+..+.|++|||+|||+|+.+.+.|++++.
T Consensus        17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            34455699999999999999999 99999999 56669999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhHCCCC-ce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      ++|+|||++|..||++..+|++.++..+... ++ +|||||.||     .+.+++..+++...|+++++.|+++||+.|.
T Consensus        97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL-----~dkrqvs~eEg~~kAkel~a~f~etsak~g~  171 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL-----SDKRQVSIEEGERKAKELNAEFIETSAKAGE  171 (221)
T ss_pred             EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc-----cchhhhhHHHHHHHHHHhCcEEEEecccCCC
Confidence            9999999999999999999999999886653 44 599999997     2335667889999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCc
Q 023335          251 NVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~~  267 (283)
                      ||+++|..|...+....
T Consensus       172 NVk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  172 NVKQLFRRIAAALPGME  188 (221)
T ss_pred             CHHHHHHHHHHhccCcc
Confidence            99999999998887764

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-39  Score=256.64  Aligned_cols=165  Identities=20%  Similarity=0.368  Sum_probs=152.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+|++++|+.|||||+|+ +|+.+.|... ..|.|+++..+.+.+++++++++||||+|++.|+++.+.||++|.++|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            35799999999999999999 9999999944 459999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ||||+++++||..+..|+.+++++. ++..++|+|||+||     +..+.+..+|++.||+++|+.++|+||++++||+|
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL-----~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEE  158 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL-----EARREVSKEEGEAFAREHGLIFMETSAKTAENVEE  158 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh-----hccccccHHHHHHHHHHcCceeehhhhhhhhhHHH
Confidence            9999999999999999999999995 66666899999997     34556779999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023335          255 IFKFIMAKLFNLP  267 (283)
Q Consensus       255 lf~~l~~~i~~~~  267 (283)
                      +|..+...++.+-
T Consensus       159 aF~nta~~Iy~~~  171 (216)
T KOG0098|consen  159 AFINTAKEIYRKI  171 (216)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=100.00  E-value=2.7e-38  Score=243.27  Aligned_cols=191  Identities=61%  Similarity=1.020  Sum_probs=183.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhccc
Q 023335           93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD  170 (283)
Q Consensus        93 ~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  170 (283)
                      ...++...+||-++|++.+|||||+ +|+++++. ++..+.|+++..+++.+.+..+.+.|||.+|++++..+.+..+++
T Consensus        13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d   92 (205)
T KOG1673|consen   13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD   92 (205)
T ss_pred             cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence            3346778999999999999999999 99999998 566699999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      +-+++|+||++.+++++.+..||.+.+..+...+||+||+|.|++..++++.++.+..+++.+|+.++++.|++|+..+.
T Consensus        93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI  172 (205)
T KOG1673|consen   93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI  172 (205)
T ss_pred             cEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCccccccccCCCCCCCCC
Q 023335          251 NVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF  283 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~~~~~~~~~~~~~~i~d~  283 (283)
                      ||+++|+.+...+++.+|+++++...|+||+||
T Consensus       173 Nv~KIFK~vlAklFnL~~ti~~~~~iGdPildy  205 (205)
T KOG1673|consen  173 NVQKIFKIVLAKLFNLPWTIPEILTIGDPILDY  205 (205)
T ss_pred             cHHHHHHHHHHHHhCCceecccccccCcccccC
Confidence            999999999999999999999999999999998

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=243.18  Aligned_cols=164  Identities=25%  Similarity=0.477  Sum_probs=152.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+|.+|+|++|||||||+ +|..+.|. ++..|+|+|+..+++.++|..++++|||++|+|+|+.+...||+..+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            3578999999999999999 99999999 555699999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |||+++.+||.++.+|+++++..++..|-|+||||.|+     ++++.+..++++.||..+|+.+||+|||.++|++..|
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~-----~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDD-----PERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCC-----ccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            99999999999999999999999987777999999996     3455566999999999999999999999999999999


Q ss_pred             HHHHHHHhCCc
Q 023335          257 KFIMAKLFNLP  267 (283)
Q Consensus       257 ~~l~~~i~~~~  267 (283)
                      ..|.+..++..
T Consensus       162 ~cit~qvl~~k  172 (198)
T KOG0079|consen  162 HCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=4e-37  Score=254.28  Aligned_cols=180  Identities=58%  Similarity=0.966  Sum_probs=160.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|+.|||||||+ +|+++.|. .+.+|.|.++..+.+.+++..+.+++|||+|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999 99999998 56779999998889999999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  258 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  258 (283)
                      |+++++||+++..|++++.+..+..+||+||||+||....+...++...++++++++.++++++++||++|.||+++|++
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~  160 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI  160 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988766667789999999843333333333467888999999999999999999999999999


Q ss_pred             HHHHHhCCccccccccCCCCCC
Q 023335          259 IMAKLFNLPWTVKRNLTIGEPI  280 (283)
Q Consensus       259 l~~~i~~~~~~~~~~~~~~~~i  280 (283)
                      +++.+++.+.....-...||||
T Consensus       161 l~~~l~~~~~~~~~~~~~~~~~  182 (182)
T cd04128         161 VLAKAFDLPLTIPEILTVGEPI  182 (182)
T ss_pred             HHHHHHhcCCChhhhcCCCCCC
Confidence            9999999888888888888886

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3e-37  Score=244.16  Aligned_cols=168  Identities=21%  Similarity=0.364  Sum_probs=151.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +|++++|. .+..|+|.+|..+.+.+++..+.++||||+|||+|.++.-.||++||+.+
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            34699999999999999999 99999999 67779999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC----CCCce-EEEeecCCCCCCCCC-CcccchHHHHHHHHHHcC-CcEEEEcCCC
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIP-ILIGTKFDDFVRLPP-DLQWTIATQARAYAKAMK-ATLFFSSATH  248 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~-ilvgnK~DL~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~  248 (283)
                      +|||+++++||+++..|.+++..+.    |..-| ||+|||+|+    +. ..+.+..+.++.||+..| ++|||+|||.
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~----~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~  162 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV----DGGKSRQVSEKKAQTWCKSKGNIPYFETSAKE  162 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC----CCCccceeeHHHHHHHHHhcCCceeEEecccc
Confidence            9999999999999999999988773    23444 799999995    33 336667999999999875 7999999999


Q ss_pred             CcCHHHHHHHHHHHHhCCccc
Q 023335          249 NINVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~~~~  269 (283)
                      ..||++.|+.+.+.++..+..
T Consensus       163 ~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  163 ATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cccHHHHHHHHHHHHHhccch
Confidence            999999999999999988753

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-37  Score=246.89  Aligned_cols=168  Identities=26%  Similarity=0.454  Sum_probs=155.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      ..-...+||+++|+++||||-|+ ||..++|. +..+|+|+++...++.++++.++.+||||+|||+|+.+...||++|.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            34456899999999999999999 99999999 88899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  251 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  251 (283)
                      +.++|||++.+.+|+++..|+.+++.+....++ +|||||+||     ...+.+..++++.+|+..+..++|+||.++.|
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL-----~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tN  163 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDL-----NHLRAVPTEDGKAFAEKEGLFFLETSALDATN  163 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhh-----hhccccchhhhHhHHHhcCceEEEeccccccc
Confidence            999999999999999999999999999765555 699999997     23455669999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCc
Q 023335          252 VNKIFKFIMAKLFNLP  267 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~  267 (283)
                      |++.|..++..|++..
T Consensus       164 Ve~aF~~~l~~I~~~v  179 (222)
T KOG0087|consen  164 VEKAFERVLTEIYKIV  179 (222)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.4e-36  Score=248.63  Aligned_cols=164  Identities=23%  Similarity=0.374  Sum_probs=147.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|+.|||||||+ +|.++.|. ++.++.+.++....+.+++..+.+++|||+|+++|..++..+++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            4699999999999999999 99999988 444578888888888999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |||+++++||+++..|++++..+.++.|+||||||+||.     ..+.+..++++.+++.+++.|||+||++|.||+++|
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~-----~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA-----FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch-----hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            999999999999999999998887777778999999972     223445888999999999999999999999999999


Q ss_pred             HHHHHHHhCCc
Q 023335          257 KFIMAKLFNLP  267 (283)
Q Consensus       257 ~~l~~~i~~~~  267 (283)
                      +++++.+....
T Consensus       160 ~~l~~~i~~~~  170 (189)
T cd04121         160 TELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHHhc
Confidence            99999887543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-36  Score=231.60  Aligned_cols=164  Identities=25%  Similarity=0.462  Sum_probs=151.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+|++++|+..||||||+ ++.++.|. ..+.|.|++|..+++.-..+.+++++|||+|+|+|+.+...||++++++||
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            3569999999999999999 99999999 788899999999999888899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||++|.+||..++.|...|+.+.-. .++||||||||+     ++++.+..+.++.++.++|+.|||+|||.+.||+++
T Consensus       100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm-----d~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~  174 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM-----DSERVISHERGRQLADQLGFEFFETSAKENINVKQV  174 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC-----ccceeeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence            99999999999999999999999764 455799999997     344556699999999999999999999999999999


Q ss_pred             HHHHHHHHhCCc
Q 023335          256 FKFIMAKLFNLP  267 (283)
Q Consensus       256 f~~l~~~i~~~~  267 (283)
                      |+.++..+.++.
T Consensus       175 Fe~lv~~Ic~km  186 (193)
T KOG0093|consen  175 FERLVDIICDKM  186 (193)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.1e-35  Score=249.05  Aligned_cols=161  Identities=23%  Similarity=0.415  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +.|+++|+.|||||||+ +|+.+.|. .+.+|.+.++..+.+.+++..+.+++|||+|+++|..++..|++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46999999999999999 99999998 45568899998889999999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIF  256 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |+++++||+++..|++.+.+... +.|+||||||+||.     ..+.+..++++++++++ ++.|+++||++|.||+++|
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~-----~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F  155 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-----TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  155 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence            99999999999999999987754 45557999999972     23445577888899885 7899999999999999999


Q ss_pred             HHHHHHHhCC
Q 023335          257 KFIMAKLFNL  266 (283)
Q Consensus       257 ~~l~~~i~~~  266 (283)
                      +++++.+.+.
T Consensus       156 ~~l~~~~~~~  165 (202)
T cd04120         156 LKLVDDILKK  165 (202)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.3e-35  Score=241.33  Aligned_cols=165  Identities=22%  Similarity=0.362  Sum_probs=142.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|+++||||||+ +|+.+.|. ++.+|.+..+ .+.+.+++..+.+++|||+|+++|..+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            79999999999999999 99999998 5667877665 456778999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCC-----CCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023335          179 DLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP-----PDLQWTIATQARAYAKAMKA-TLFFSSATHNIN  251 (283)
Q Consensus       179 D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-----~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  251 (283)
                      |+++++||+++ ..|+++++...++.|+||||||+||..+-.     ...+.+..+++.++++.+++ .|+||||++|.|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  160 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN  160 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence            99999999998 689999988877767789999999732100     01123558899999999998 599999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 023335          252 VNKIFKFIMAKLFNL  266 (283)
Q Consensus       252 v~~lf~~l~~~i~~~  266 (283)
                      |+++|+.+++.+.+.
T Consensus       161 V~~~F~~~~~~~~~~  175 (176)
T cd04133         161 VKAVFDAAIKVVLQP  175 (176)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999987553

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3.4e-35  Score=242.57  Aligned_cols=167  Identities=26%  Similarity=0.342  Sum_probs=144.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +|+.+.|. .+.||.+.++ .+.+.+++..+.+++|||+|+++|..+.+.+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            35789999999999999999 99999998 5556777665 467888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023335          176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~------~-~~~~~~~~~~~~~~~~~~~-~~~e~Sa  246 (283)
                      +|||+++++||+++ ..|+++++++.++.|+||||||+||.....      . ..+.+..++++++|+++++ +|+||||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999998 799999999887777789999999732110      0 1123558899999999996 8999999


Q ss_pred             CCCcC-HHHHHHHHHHHHhC
Q 023335          247 THNIN-VNKIFKFIMAKLFN  265 (283)
Q Consensus       247 ~~~~~-v~~lf~~l~~~i~~  265 (283)
                      ++|.| |+++|+.+++.+++
T Consensus       162 k~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         162 LQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99998 99999999997665

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-36  Score=228.67  Aligned_cols=164  Identities=23%  Similarity=0.415  Sum_probs=150.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|..|||||+|+ +|..+-|. ..-.|+|++|+.+++.++|.+++++||||+|+++|+++...||+.|+++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            45689999999999999999 99999998 66669999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++...||+.+.+|+.+|.+|..++.. |+||||.|+     .+++++..+.+++|++...+-|.|+||+..+||+.
T Consensus        85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~-----~drrevp~qigeefs~~qdmyfletsakea~nve~  159 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL-----ADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEK  159 (213)
T ss_pred             EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch-----hhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHH
Confidence            999999999999999999999999766666 899999996     34556668889999999888788999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|..+...+...
T Consensus       160 lf~~~a~rli~~  171 (213)
T KOG0095|consen  160 LFLDLACRLISE  171 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            999998877553

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.2e-36  Score=232.52  Aligned_cols=165  Identities=21%  Similarity=0.409  Sum_probs=149.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ...+++++||++-||||||+ .|..++|. -..||.|+||+.+.+.+ +|..+++++|||+|||+|+++...||+++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35799999999999999999 99999999 56779999999887776 68899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC--CCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  251 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  251 (283)
                      ++|||++|++||+.+..|+.+...+.  |.+++ .|||+|+||     ...+.+..++++++++.+|+.|+|+||++|.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL-----~SqRqVt~EEaEklAa~hgM~FVETSak~g~N  160 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDL-----QSQRQVTAEEAEKLAASHGMAFVETSAKNGCN  160 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccch-----hhhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence            99999999999999999999988774  55666 499999997     24566779999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCc
Q 023335          252 VNKIFKFIMAKLFNLP  267 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~  267 (283)
                      |++.|..+.+.++..-
T Consensus       161 VeEAF~mlaqeIf~~i  176 (213)
T KOG0091|consen  161 VEEAFDMLAQEIFQAI  176 (213)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887654

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.9e-36  Score=230.70  Aligned_cols=167  Identities=28%  Similarity=0.474  Sum_probs=154.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|..-||||||+ +|+.++|. ....|....|..+.+.+.+....+.||||+||++|..+.+.||+++++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            35899999999999999999 99999999 77778888999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++|++||+.++.|..+++....+.+- +|||||+||     ++++.+..+++..+++..|+.|+++||+.+.||.+
T Consensus        91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL-----EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e  165 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL-----EEERQVTRQEAEAYAESVGALYMETSAKDNVGISE  165 (218)
T ss_pred             EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH-----HHhhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence            999999999999999999999998776666 699999997     35566779999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCccc
Q 023335          255 IFKFIMAKLFNLPWT  269 (283)
Q Consensus       255 lf~~l~~~i~~~~~~  269 (283)
                      +|+.+.+.+++.-..
T Consensus       166 lFe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  166 LFESLTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998876533

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.2e-34  Score=238.63  Aligned_cols=164  Identities=25%  Similarity=0.333  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+++|++|||||||+ +|+++.|. .+.||.+.++ .+.+.+++..+.+++|||+|++.|..+.+.+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            479999999999999999 99999998 5556777665 46788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335          178 FDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSATH  248 (283)
Q Consensus       178 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~------~-~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~  248 (283)
                      ||+++++||+++ ..|+++++++.++.|+||||||+||..+..      . ....+..++++++++++++ .|+|+||++
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            999999999996 799999999887777789999999732100      0 1123558899999999997 799999999


Q ss_pred             CcC-HHHHHHHHHHHHh
Q 023335          249 NIN-VNKIFKFIMAKLF  264 (283)
Q Consensus       249 ~~~-v~~lf~~l~~~i~  264 (283)
                      |+| |+++|..+++..+
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999999655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=227.10  Aligned_cols=165  Identities=23%  Similarity=0.359  Sum_probs=152.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+|++++|+.|.|||+|+ +|+.++|. ....|+|++|..+.+.+.++.++++||||+|||+|++..+.||++|.+.+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            45789999999999999999 99999999 55569999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++++||+.+..|+..++...+..+. |++|||.||     +..+++...++..||.+..+.+.|+||++|+||+|
T Consensus        87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL-----~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL-----DPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc-----ChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            999999999999999999999998776666 689999997     34466678999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023335          255 IFKFIMAKLFNLP  267 (283)
Q Consensus       255 lf~~l~~~i~~~~  267 (283)
                      .|-...+.++++-
T Consensus       162 aFl~c~~tIl~kI  174 (214)
T KOG0086|consen  162 AFLKCARTILNKI  174 (214)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887754

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=4.2e-34  Score=243.75  Aligned_cols=168  Identities=24%  Similarity=0.302  Sum_probs=145.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +|+++.|. .+.||.+.++ ...+.+++..+.++||||+|++.|..+.+.|++++|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            45799999999999999999 99999998 5666888776 456788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023335          176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~------~-~~~~~~~~~~~~~~~~~~~-~~~e~Sa  246 (283)
                      +|||+++++||+++ ..|++++....++.|+||||||+||.....      . ..+.+..++++++|+++++ .||||||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            99999999999985 799999998877777789999999732110      0 1234558899999999999 6999999


Q ss_pred             CCCc-CHHHHHHHHHHHHhCC
Q 023335          247 THNI-NVNKIFKFIMAKLFNL  266 (283)
Q Consensus       247 ~~~~-~v~~lf~~l~~~i~~~  266 (283)
                      ++|+ ||+++|..+++.+++.
T Consensus       170 ktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHHh
Confidence            9998 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=7e-34  Score=236.68  Aligned_cols=167  Identities=20%  Similarity=0.271  Sum_probs=142.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|+.|||||||+ +|+.+.|. .+.||.+.++ .+.+.+++..+.+++|||+|+++|..+++.|++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            3589999999999999999 99999997 5566777655 4556789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCC-------CcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023335          177 MFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMK-ATLFFSSAT  247 (283)
Q Consensus       177 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~-------~~~~~~~~~~~~~~~~~~-~~~~e~Sa~  247 (283)
                      |||+++++||+++. .|++++....++.|++|||||+||.+....       ....+..++++++++.++ +.|+|+||+
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            99999999999996 699989887767677899999997322110       001234678999999998 589999999


Q ss_pred             CCcCHHHHHHHHHHHHhCC
Q 023335          248 HNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~  266 (283)
                      +|.||+++|+++++.+...
T Consensus       161 ~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.6e-33  Score=227.70  Aligned_cols=161  Identities=23%  Similarity=0.394  Sum_probs=142.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ ++.++.|.. +.+|.+.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            489999999999999999 999999884 445888888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ||+++++||+.+..|++.+..... +.|+++||||+|+.     ..+....+++.++++..+++++++||++|.||+++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f  156 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-----AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF  156 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            999999999999999999877643 45557999999962     223345778899999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      .++++.+++
T Consensus       157 ~~l~~~~~~  165 (166)
T cd04122         157 LETAKKIYQ  165 (166)
T ss_pred             HHHHHHHhh
Confidence            999998865

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.4e-35  Score=220.80  Aligned_cols=161  Identities=24%  Similarity=0.413  Sum_probs=147.0

Q ss_pred             EEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          104 SLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       104 ~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      +++|++++|||+|+ +|..+.|-  ...+|.|++|..+.+.++++++++++|||+|||+|++....||+++|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999999 99999988  5667999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHH
Q 023335          181 TSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI  259 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l  259 (283)
                      +|+.||++++.|+.+|.++...... .++|||+|+     ..++.+..++++++++.++++|+|+||++|.||+-.|-.|
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~-----a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i  155 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDL-----AHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI  155 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhcccccc-----chhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence            9999999999999999999877666 599999996     1224455889999999999999999999999999999999


Q ss_pred             HHHHhCCccc
Q 023335          260 MAKLFNLPWT  269 (283)
Q Consensus       260 ~~~i~~~~~~  269 (283)
                      .+.+.+....
T Consensus       156 a~~l~k~~~~  165 (192)
T KOG0083|consen  156 AEELKKLKMG  165 (192)
T ss_pred             HHHHHHhccC
Confidence            9999876543

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.4e-33  Score=233.65  Aligned_cols=167  Identities=20%  Similarity=0.354  Sum_probs=145.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +||+|+|++|||||||+ +|+++.+. .+.+|.+.++..+.+.++ +..+.+.+|||+|++.|..+++.+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            59999999999999999 99999988 566788999888888888 8899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcC
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNIN  251 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  251 (283)
                      ||+++++||+++..|+.++....     .+.|.||||||+||.    + ......+++.++++.++ ..++++||++|.|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~  155 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK----K-RLAKDGEQMDQFCKENGFIGWFETSAKEGIN  155 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc----c-ccccCHHHHHHHHHHcCCceEEEEeCCCCCC
Confidence            99999999999999999887642     345568999999972    1 23445788999999998 6899999999999


Q ss_pred             HHHHHHHHHHHHhCCcccccc
Q 023335          252 VNKIFKFIMAKLFNLPWTVKR  272 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~~~~~~  272 (283)
                      |+++|++|++.+.+......+
T Consensus       156 v~e~f~~l~~~l~~~~~~~~~  176 (201)
T cd04107         156 IEEAMRFLVKNILANDKNLQQ  176 (201)
T ss_pred             HHHHHHHHHHHHHHhchhhHh
Confidence            999999999999876544333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=4.8e-33  Score=236.38  Aligned_cols=162  Identities=23%  Similarity=0.321  Sum_probs=143.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++.+.|. .+.+|.|.++....+..++..+.+.+|||+|+++|..++..|++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            55799999999999999999 99999998 66678899988888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      +|||+++++||+++..|+.++.+..++.|++|||||+||.      .+.+..+++ .+++..++.||++||++|.||+++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~------~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~  163 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK------NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP  163 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh------hccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHH
Confidence            9999999999999999999999887777778999999972      122223444 777888999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |++|++.+.+.
T Consensus       164 f~~l~~~~~~~  174 (219)
T PLN03071        164 FLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHcC
Confidence            99999999765

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4e-33  Score=236.48  Aligned_cols=167  Identities=23%  Similarity=0.346  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+|+|++|||||||+ +|..+.|. .+.||.+.++. ..+.+++..+.+.+|||+|++.|..+++.+|+++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999 99999998 56678776664 6778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCC------Cc-ccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335          178 FDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPP------DL-QWTIATQARAYAKAMKA-TLFFSSATH  248 (283)
Q Consensus       178 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~------~~-~~~~~~~~~~~~~~~~~-~~~e~Sa~~  248 (283)
                      ||+++++||+++ ..|..++....++.|+||||||+||..+...      .. ..+..+++..+++++++ .|+||||++
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999999 5798888888878888999999998432110      01 12447899999999996 899999999


Q ss_pred             CcC-HHHHHHHHHHHHhCCc
Q 023335          249 NIN-VNKIFKFIMAKLFNLP  267 (283)
Q Consensus       249 ~~~-v~~lf~~l~~~i~~~~  267 (283)
                      +.| |+++|+.++...++..
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            985 9999999999887754

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=5.6e-33  Score=228.11  Aligned_cols=162  Identities=18%  Similarity=0.264  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +|+.+.|. .+.||.+.++. ..+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999 99999997 66677776664 45678899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCC------CC-CcccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023335          179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRL------PP-DLQWTIATQARAYAKAMK-ATLFFSSATHN  249 (283)
Q Consensus       179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l------~~-~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~  249 (283)
                      |+++++||+++. .|+.++....++.|.||||||+|+...-      .. ..+.+..+++++++++.+ +.|+|+||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            999999999996 6999998877777778999999973210      00 113345788999999887 68999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023335          250 INVNKIFKFIMAKL  263 (283)
Q Consensus       250 ~~v~~lf~~l~~~i  263 (283)
                      .||+++|+.+++..
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=5.7e-33  Score=224.88  Aligned_cols=157  Identities=25%  Similarity=0.452  Sum_probs=140.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++++.|. .+.+|.+.++..+.+.+++..+.+++||++|++++..+...+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999 99999998 55678888888888899998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |+++++||+.+..|++++....+. .|+++||||+||.     ..+.+..+++..+++.++++|+++||++|.||+++|+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE-----QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999887654 4557999999962     2234457889999999999999999999999999999


Q ss_pred             HHHHH
Q 023335          258 FIMAK  262 (283)
Q Consensus       258 ~l~~~  262 (283)
                      +|++.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=5e-33  Score=227.75  Aligned_cols=161  Identities=13%  Similarity=0.195  Sum_probs=140.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +|+++.|. .+.+|.+..+ .+.+.+++..+.+++|||+|+++|..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            479999999999999999 99999998 5556776554 45678899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      ||+++++||+.+..|+..+....  ++.|+++||||+|+.     ..+.+..++++++++.++++|+++||++|.||+++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~-----~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~  155 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE-----SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDA  155 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh-----hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHH
Confidence            99999999999999998887753  355668999999962     22334577889999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |+++++.+.+.
T Consensus       156 f~~l~~~~~~~  166 (172)
T cd04141         156 FHGLVREIRRK  166 (172)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-34  Score=222.93  Aligned_cols=165  Identities=27%  Similarity=0.418  Sum_probs=147.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC---------CeEEEEEEEeCCCCCCcccchhh
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ---------GARIAFSIWDVGGDSRSFDHVPI  166 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~---------~~~~~l~i~Dt~G~~~~~~~~~~  166 (283)
                      ...+|.+.+|++||||||++ ++..++|. .-..|.|+||..+.+.++         +..+.+++|||+|||+|+++...
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            34689999999999999999 99999999 777899999999888763         46799999999999999999999


Q ss_pred             hcccCcEEEEEEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  244 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  244 (283)
                      |+++|-+++++||+++..||-++++|+.+++.+  ++++-+|++|||+||     ++.+.+..+++.++|.++++||||+
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL-----~~~R~Vs~~qa~~La~kyglPYfET  161 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL-----EDQRVVSEDQAAALADKYGLPYFET  161 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch-----hhhhhhhHHHHHHHHHHhCCCeeee
Confidence            999999999999999999999999999998865  556566899999997     3445566899999999999999999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCCc
Q 023335          245 SATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      ||-+|.||++..+.++..++++-
T Consensus       162 SA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  162 SACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             ccccCcCHHHHHHHHHHHHHHHH
Confidence            99999999999988888776643

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.6e-32  Score=224.33  Aligned_cols=163  Identities=25%  Similarity=0.386  Sum_probs=142.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      ||+++|++|||||||+ +++++.|. ++.+|.+.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            8999999999999999 99999998 666788999888888899999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH-CCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          180 LTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~-~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      ++++++|+.+..|++++.+. .++.+| ++||||+||.   +........+++..++++++++|+++||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~  158 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS---SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFF  158 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC---ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999998765 344455 7999999962   211112346778888888999999999999999999999


Q ss_pred             HHHHHHhCCc
Q 023335          258 FIMAKLFNLP  267 (283)
Q Consensus       258 ~l~~~i~~~~  267 (283)
                      .+++.+.+.+
T Consensus       159 ~l~~~~~~~~  168 (170)
T cd04108         159 RVAALTFELG  168 (170)
T ss_pred             HHHHHHHHcc
Confidence            9999987754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1e-32  Score=222.84  Aligned_cols=158  Identities=27%  Similarity=0.472  Sum_probs=144.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      ||+++|+++||||||+ +|.++.|. .+.+|.|.+...+.+.+++..+.+++||++|++.|..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999 99999988 566688899999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023335          180 LTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  258 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  258 (283)
                      +++++||+++..|++.+..+.+. .|++|||||.|+.     ..+.+..+++++++++++++|+|+||+++.||.++|..
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS-----DEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG-----GGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeecccccc-----ccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999884 5557999999962     23455578999999999999999999999999999999


Q ss_pred             HHHHHh
Q 023335          259 IMAKLF  264 (283)
Q Consensus       259 l~~~i~  264 (283)
                      +++.+.
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.2e-32  Score=222.54  Aligned_cols=162  Identities=21%  Similarity=0.396  Sum_probs=143.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ ++.++.|. .+.+|.+.++....+.+++..+.+++||++|++.+..+...+++++|++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            3589999999999999999 99999988 566788888888888899989999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||++++++|+.+..|+..+..+.. +.|+++||||+|+.    + ......+++..+++.++++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  156 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME----E-KRVVSKEEGEALADEYGIKFLETSAKANINVEEA  156 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc----c-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999988754 44558999999972    1 2233467788899999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023335          256 FKFIMAKLFN  265 (283)
Q Consensus       256 f~~l~~~i~~  265 (283)
                      |+++.+.+.+
T Consensus       157 ~~~i~~~~~~  166 (167)
T cd01867         157 FFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.6e-32  Score=225.79  Aligned_cols=162  Identities=27%  Similarity=0.445  Sum_probs=140.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC----------CeEEEEEEEeCCCCCCcccchhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ----------GARIAFSIWDVGGDSRSFDHVPI  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~----------~~~~~l~i~Dt~G~~~~~~~~~~  166 (283)
                      ..+||+++|++|||||||+ ++.++.+. .+.+|.+.++....+.+.          +..+.+++|||+|+++|..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            4699999999999999999 99999998 566788888877766654          45789999999999999999999


Q ss_pred             hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  244 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  244 (283)
                      +++++|++++|||+++++||.++..|+.++....  ++.|+++||||+||.     ....+..+++.++++.++++++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-----DQRQVSEEQAKALADKYGIPYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-----hcCccCHHHHHHHHHHcCCeEEEE
Confidence            9999999999999999999999999999998764  345557999999972     122344677899999999999999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhC
Q 023335          245 SATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ||++|.|++++|++|++.+++
T Consensus       158 Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999998865

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.2e-32  Score=221.13  Aligned_cols=160  Identities=24%  Similarity=0.483  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ ++.+++|. .+.+|.+.++....+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999 99999998 56678888887778888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |++++++|+.+..|+.++..+.. ..|+++||||+||.    + .+....+++.++++.++++++++||++|.|++++|+
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  156 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME----D-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFE  156 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC----c-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999988764 45558999999972    1 222346777888888999999999999999999999


Q ss_pred             HHHHHHhC
Q 023335          258 FIMAKLFN  265 (283)
Q Consensus       258 ~l~~~i~~  265 (283)
                      ++++.+.+
T Consensus       157 ~l~~~~~~  164 (165)
T cd01865         157 RLVDIICD  164 (165)
T ss_pred             HHHHHHHh
Confidence            99987754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.5e-32  Score=220.77  Aligned_cols=160  Identities=24%  Similarity=0.372  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++.+.+. ...+|.+.++....+..++..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            59999999999999999 99998887 56678888888777778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  258 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  258 (283)
                      |+++.+||+.+..|+.++.....+.|+++||||+|+.      .. ....+..++++..++++|++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~------~~-~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK------DR-KVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc------cc-cCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHH
Confidence            9999999999999999999887777778999999972      11 1223445677778889999999999999999999


Q ss_pred             HHHHHhCCc
Q 023335          259 IMAKLFNLP  267 (283)
Q Consensus       259 l~~~i~~~~  267 (283)
                      |++.+.+.+
T Consensus       154 l~~~~~~~~  162 (166)
T cd00877         154 LARKLLGNP  162 (166)
T ss_pred             HHHHHHhcc
Confidence            999997644

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=4.3e-32  Score=220.31  Aligned_cols=161  Identities=20%  Similarity=0.418  Sum_probs=142.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+++||++|++++..++..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            489999999999999999 99999988 5567888888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ||+++++||+++..|+..+.... ++.|.++||||+|+.    . ......+++..+++.++++++++||++|.|++++|
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  156 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----D-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAF  156 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc----c-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence            99999999999999999998876 345668999999962    1 22344678889999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      ++|++.+.+
T Consensus       157 ~~i~~~~~~  165 (166)
T cd01869         157 MTMAREIKK  165 (166)
T ss_pred             HHHHHHHHh
Confidence            999998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.2e-32  Score=222.70  Aligned_cols=161  Identities=24%  Similarity=0.355  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++.+.|. ++.+|.+ +.....+.+++..+.+.+|||+|++.|..+++.+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999 99999998 5556665 444566778899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335          179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHN  249 (283)
Q Consensus       179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~  249 (283)
                      |+++++||+++. .|+..+....++.|+||||||+||...-.       .....+..+++.+++++++. .|+|+||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            999999999996 69999888777777789999999732100       00123458889999999985 8999999999


Q ss_pred             cCHHHHHHHHHHH
Q 023335          250 INVNKIFKFIMAK  262 (283)
Q Consensus       250 ~~v~~lf~~l~~~  262 (283)
                      +||+++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-33  Score=211.05  Aligned_cols=168  Identities=23%  Similarity=0.372  Sum_probs=153.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .-+|.+++|+-|||||+|+ +|..++|. +...|+|++|..+.+.+.|++++++||||+|+++|+...+.||+++.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            4689999999999999999 99999999 555599999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH-CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||++.+.+++.+..|+...+.. +++..++++|||.||     ++.+.+..+++.+|+++.|..|.|+||++|+||++.
T Consensus        90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadl-----e~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-----ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh-----hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            99999999999999999998877 567777899999997     345566799999999999999999999999999999


Q ss_pred             HHHHHHHHhCCccccc
Q 023335          256 FKFIMAKLFNLPWTVK  271 (283)
Q Consensus       256 f~~l~~~i~~~~~~~~  271 (283)
                      |-...+.+.++-+.-.
T Consensus       165 fle~akkiyqniqdgs  180 (215)
T KOG0097|consen  165 FLETAKKIYQNIQDGS  180 (215)
T ss_pred             HHHHHHHHHHhhhcCc
Confidence            9999999887654433

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=7.1e-32  Score=225.99  Aligned_cols=164  Identities=23%  Similarity=0.433  Sum_probs=146.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +|.++.|. .+.+|.+.++....+.+++..+.+.+||++|++.+..++..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            3699999999999999999 99999988 566788888888888889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |||+++++||+.+..|++.+....+..|++|||||+|+.    + ......+++..+++.+++++|++||++|.||+++|
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf  159 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP----E-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMF  159 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc----c-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHH
Confidence            999999999999999999998877777778999999962    1 22334677888998999999999999999999999


Q ss_pred             HHHHHHHhCCc
Q 023335          257 KFIMAKLFNLP  267 (283)
Q Consensus       257 ~~l~~~i~~~~  267 (283)
                      ++|.+.++...
T Consensus       160 ~~l~~~~~~~~  170 (199)
T cd04110         160 NCITELVLRAK  170 (199)
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=4.2e-32  Score=230.09  Aligned_cols=162  Identities=26%  Similarity=0.413  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC-eEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +||+++|++|||||||+ +|+++.|. .+.+|.+.++..+.+.+++ ..+.+++|||+|++.+..++..|++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            59999999999999999 99999988 5667999999888888865 579999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCC---CCc-eEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQ---TAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~---~~~-~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      ||+++++||+++..|++.+.+...   ..+ +++||||+||.     ..+.+..+++..+++.++++++++||++|+||+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~-----~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~  155 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE-----HNRTVKDDKHARFAQANGMESCLVSAKTGDRVN  155 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence            999999999999999999988743   234 46899999972     223445778889999999999999999999999


Q ss_pred             HHHHHHHHHHhCCc
Q 023335          254 KIFKFIMAKLFNLP  267 (283)
Q Consensus       254 ~lf~~l~~~i~~~~  267 (283)
                      ++|+++++.+....
T Consensus       156 ~lf~~l~~~l~~~~  169 (215)
T cd04109         156 LLFQQLAAELLGVD  169 (215)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=6e-32  Score=218.33  Aligned_cols=158  Identities=18%  Similarity=0.303  Sum_probs=135.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+++|++|||||||+ +++.+.|...+ +|++ +...+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            379999999999999999 99999988444 4555 55567788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      ||++++++|+++..|++.+....  .+.|.++||||+|+.    . ......+++..+++.++++++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  154 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE----D-ERVVSREEGQALARQWGCPFYETSAKSKINVDEV  154 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            99999999999999999998763  345668999999962    1 2233466777888888899999999999999999


Q ss_pred             HHHHHHHH
Q 023335          256 FKFIMAKL  263 (283)
Q Consensus       256 f~~l~~~i  263 (283)
                      |+++++.+
T Consensus       155 ~~~l~~~~  162 (163)
T cd04136         155 FADLVRQI  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=6.4e-32  Score=218.77  Aligned_cols=160  Identities=18%  Similarity=0.369  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            59999999999999999 99999988 66678899988888999999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCC------CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQ------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~------~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      |++++++|+.+..|+.++.++..      ..|+++|+||+|+.    + ......++.+.+++..+++++++||++|.|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT----K-HRAVSEDEGRLWAESKGFKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc----c-ccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            99999999999999999988753      34557999999962    1 2334477778888988999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 023335          253 NKIFKFIMAKLFN  265 (283)
Q Consensus       253 ~~lf~~l~~~i~~  265 (283)
                      +++|++|++.+++
T Consensus       156 ~~l~~~l~~~l~~  168 (168)
T cd04119         156 NEMFQTLFSSIVD  168 (168)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998763

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=6.6e-32  Score=224.36  Aligned_cols=166  Identities=22%  Similarity=0.246  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      .||+++|++|||||||+ +|.++.|. .+.+|.+.++ ...+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999 99999998 4455666654 356677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC-------cccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023335          179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-------LQWTIATQARAYAKAMK-ATLFFSSATHN  249 (283)
Q Consensus       179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-------~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~  249 (283)
                      |+++++||+.+. .|++.+....++.|+||||||+||.......       ...+..+++.++++..+ +.|+++||++|
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            999999999996 6999999877777778999999973221100       01233667888888887 68999999999


Q ss_pred             cCHHHHHHHHHHHHhCCc
Q 023335          250 INVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~~~  267 (283)
                      .||+++|+++++.++...
T Consensus       160 ~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         160 RGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999999987543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.1e-31  Score=217.25  Aligned_cols=158  Identities=26%  Similarity=0.467  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++++.|. ...++.+.++..+.+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999 99999988 44457777777777888899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF  258 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  258 (283)
                      |++++.+|+++..|+..+++..++.|.++|+||+|+    ..    ...++...+++..+++++++||++|.|++++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl----~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL----DP----SVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccC----ch----hHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999887767777999999996    11    1234566777888899999999999999999999


Q ss_pred             HHHHHhCC
Q 023335          259 IMAKLFNL  266 (283)
Q Consensus       259 l~~~i~~~  266 (283)
                      +++.+.+.
T Consensus       153 l~~~~~~~  160 (161)
T cd04124         153 AIKLAVSY  160 (161)
T ss_pred             HHHHHHhc
Confidence            99988754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=6.1e-32  Score=218.30  Aligned_cols=153  Identities=22%  Similarity=0.362  Sum_probs=128.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+++|++|||||||+ +++.+.|...+++++..+ .+.+.+++..+.+.+|||+|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            58999999999999999 999999885555555555 46788999999999999999975     346789999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHH
Q 023335          180 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIF  256 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf  256 (283)
                      +++++||+++..|++++..+.  ++.|++|||||+||.   ....+.+..++++++++.. ++.|+||||++|.||+++|
T Consensus        75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103          75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS---ESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF  151 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh---hcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence            999999999999999998875  345667999999961   1123445577888999876 4899999999999999999


Q ss_pred             HHHHHH
Q 023335          257 KFIMAK  262 (283)
Q Consensus       257 ~~l~~~  262 (283)
                      +.+++.
T Consensus       152 ~~~~~~  157 (158)
T cd04103         152 QEAAQK  157 (158)
T ss_pred             HHHHhh
Confidence            999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=7.4e-32  Score=225.63  Aligned_cols=154  Identities=23%  Similarity=0.333  Sum_probs=137.0

Q ss_pred             EcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh
Q 023335          106 LGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  183 (283)
Q Consensus       106 lG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~  183 (283)
                      +|++|||||||+ +|+.+.|. .+.+|.|.++..+.+.+++..+.+.||||+|+++|..++..|++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999 99999988 5667889999888889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          184 CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       184 ~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +||+.+..|++++.+..++.|+||||||+||.    .  +.+..+ ...+++..++.|+||||++|.||+++|++|++.+
T Consensus        81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~----~--~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK----D--RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECcccc----c--ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999887777778999999972    1  222233 3467888899999999999999999999999998


Q ss_pred             hCC
Q 023335          264 FNL  266 (283)
Q Consensus       264 ~~~  266 (283)
                      .+.
T Consensus       154 ~~~  156 (200)
T smart00176      154 IGD  156 (200)
T ss_pred             Hhc
Confidence            765

Ran is involved in the active transport of proteins through nuclear pores.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.3e-31  Score=217.10  Aligned_cols=158  Identities=20%  Similarity=0.270  Sum_probs=135.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+++|++|||||||+ +++.+.+.+ +.+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            479999999999999999 999998874 445665544 46778889899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      ||+++.++|+++.+|+..+....  .+.|.+|||||+||.    . ......+++..+++.++++++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  154 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE----D-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEI  154 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch----h-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence            99999999999999999987653  355668999999972    1 1223356678888889999999999999999999


Q ss_pred             HHHHHHHH
Q 023335          256 FKFIMAKL  263 (283)
Q Consensus       256 f~~l~~~i  263 (283)
                      |.++++.+
T Consensus       155 ~~~l~~~l  162 (164)
T cd04175         155 FYDLVRQI  162 (164)
T ss_pred             HHHHHHHh
Confidence            99999865

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=8.5e-32  Score=223.87  Aligned_cols=162  Identities=18%  Similarity=0.254  Sum_probs=137.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      ||+++|++|||||||+ +|+.+.|.. +.+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            6899999999999999 999999884 445665444 4566788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          180 LTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      +++.+||+.+..|++.+....    .+.|+||||||+|+.    . ......+++.++++.++++|+++||++|.|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  154 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV----Y-EREVSTEEGAALARRLGCEFIEASAKTNVNVERA  154 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc----c-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence            999999999999999987764    345667999999962    1 2334466778889999999999999999999999


Q ss_pred             HHHHHHHHhCCccc
Q 023335          256 FKFIMAKLFNLPWT  269 (283)
Q Consensus       256 f~~l~~~i~~~~~~  269 (283)
                      |+++++.+.+....
T Consensus       155 ~~~l~~~l~~~~~~  168 (190)
T cd04144         155 FYTLVRALRQQRQG  168 (190)
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999988765433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=8.4e-32  Score=228.22  Aligned_cols=164  Identities=23%  Similarity=0.400  Sum_probs=137.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+|+|++|||||||+ +|+.+.|....+|++.++....+    ..+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            58999999999999999 99999998767788877654433    46789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCC--------------CCcccchHHHHHHHHHHcC------
Q 023335          180 LTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLP--------------PDLQWTIATQARAYAKAMK------  238 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~--------------~~~~~~~~~~~~~~~~~~~------  238 (283)
                      +++++||+++..|+..+.+... +.|+||||||+||.....              ...+.+..+++..++++++      
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            9999999999988887776543 455589999999843100              0134555889999999876      


Q ss_pred             --------CcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023335          239 --------ATLFFSSATHNINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       239 --------~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~  268 (283)
                              ++|+||||++|.||+++|..+++.++....
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~  194 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL  194 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                    689999999999999999999998876553

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.2e-31  Score=223.66  Aligned_cols=161  Identities=20%  Similarity=0.327  Sum_probs=128.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hh-hcCc-----cc-ccccccee-eeeEEE--------EEECCeEEEEEEEeCCCCCCccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KY-VGNE-----QE-RSLQMAGL-NLINKT--------LMVQGARIAFSIWDVGGDSRSFD  162 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~-~~~~-----~~-~~~~t~~~-~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~  162 (283)
                      .+||+++|+.|||||||+ ++ .++.     |. .+.||++. +.+...        +.+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            479999999999999999 54 4433     33 44567752 333222        25789999999999999986  3


Q ss_pred             chhhhcccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC--------------CCcccchH
Q 023335          163 HVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP--------------PDLQWTIA  227 (283)
Q Consensus       163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~--------------~~~~~~~~  227 (283)
                      +...+++++|++|+|||+++++||+++. .|+++++...++.|+||||||+||.....              ...+.+..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            5667899999999999999999999997 69999988776677789999999742100              01244558


Q ss_pred             HHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          228 TQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       228 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      ++++++|++++++|+||||++|.||+++|+.+++.
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            89999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.4e-31  Score=222.82  Aligned_cols=164  Identities=24%  Similarity=0.458  Sum_probs=144.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +||+++|++|||||||+ +++++.+.  .+.+|++.++..+.+.+++..+.++||||+|++++..+...+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999 99999986  4556888888877888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ||+++++||+++..|+..+....+.. |.++||||+|+.    . .+....+++..+++.++++|+++||++|.|++++|
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~----~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~  155 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS----G-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAF  155 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch----h-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999887544 447999999962    1 23334677888999999999999999999999999


Q ss_pred             HHHHHHHhCCccc
Q 023335          257 KFIMAKLFNLPWT  269 (283)
Q Consensus       257 ~~l~~~i~~~~~~  269 (283)
                      ++|.+.+.+..+.
T Consensus       156 ~~l~~~~~~~~~~  168 (191)
T cd04112         156 TAVAKELKHRKYE  168 (191)
T ss_pred             HHHHHHHHHhccc
Confidence            9999999887644

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.7e-31  Score=221.93  Aligned_cols=163  Identities=16%  Similarity=0.235  Sum_probs=140.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.+. .+.+|.+.++ .+.+.+++..+.+++|||+|+++|..++..+++++|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            4699999999999999999 99999988 4445666555 5677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++++||+++..|+..+.....  +.|.++||||+|+.    . ...+..+++..+++.++++++++||++|.||++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD----S-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence            9999999999999999999887643  44557999999962    1 223346677888888899999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023335          255 IFKFIMAKLFNLP  267 (283)
Q Consensus       255 lf~~l~~~i~~~~  267 (283)
                      +|+++++.+.+..
T Consensus       158 ~~~~l~~~l~~~~  170 (189)
T PTZ00369        158 AFYELVREIRKYL  170 (189)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887653

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.1e-31  Score=215.57  Aligned_cols=159  Identities=18%  Similarity=0.260  Sum_probs=135.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      ++||+++|++|||||||+ +++.+.+...+.++..++....+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            479999999999999999 9999998844443334666678888998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |+++++||+++..|+..+....  .+.|.++||||+|+.    . ......++...+++.++++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  155 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE----S-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF  155 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch----h-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHH
Confidence            9999999999999999988763  355668999999962    1 12233556788888888999999999999999999


Q ss_pred             HHHHHHH
Q 023335          257 KFIMAKL  263 (283)
Q Consensus       257 ~~l~~~i  263 (283)
                      +++++.+
T Consensus       156 ~~l~~~l  162 (163)
T cd04176         156 AEIVRQM  162 (163)
T ss_pred             HHHHHhc
Confidence            9998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.6e-31  Score=220.40  Aligned_cols=162  Identities=20%  Similarity=0.424  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ ++.++.|. .+.+|.+.++..+.+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999 99999998 46678898888888889998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |+++++||+++..|+.++..+... .|.|+||||+|+.     ....+..+++..+++..+++++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV-----NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc-----ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999987654 4457999999972     1223346777888888899999999999999999999


Q ss_pred             HHHHHHhCCc
Q 023335          258 FIMAKLFNLP  267 (283)
Q Consensus       258 ~l~~~i~~~~  267 (283)
                      ++++.+.+..
T Consensus       156 ~l~~~~~~~~  165 (188)
T cd04125         156 LLVKLIIKRL  165 (188)
T ss_pred             HHHHHHHHHh
Confidence            9999987654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.98  E-value=1.7e-31  Score=225.74  Aligned_cols=163  Identities=23%  Similarity=0.434  Sum_probs=142.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+ ++..+.+++|||+|++.+..+...+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999 99999988 55678889988888877 4678999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC-CCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++++||+++..|+.++.... +..++ +|||||+|+.     ....+..+++..+++.++++|+++||++|.||++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE-----SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc-----cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence            999999999999999999998764 33454 7899999972     1233457788899999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023335          255 IFKFIMAKLFNLP  267 (283)
Q Consensus       255 lf~~l~~~i~~~~  267 (283)
                      +|++|++.+.+..
T Consensus       157 ~f~~l~~~~~~~~  169 (211)
T cd04111         157 AFELLTQEIYERI  169 (211)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.98  E-value=2.9e-31  Score=215.11  Aligned_cols=159  Identities=26%  Similarity=0.475  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ ++.++.+. .+.++.+.++..+.+.+++..+.+.+||++|++++..+...++++++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            489999999999999999 99999988 6778889888888999999889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ||++++++|+++..|+.++...... .|+++||||+|+.    . .+....++...+++..++.++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  157 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR----H-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF  157 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            9999999999999999999888765 4447999999962    1 23344677888888889999999999999999999


Q ss_pred             HHHHHHH
Q 023335          257 KFIMAKL  263 (283)
Q Consensus       257 ~~l~~~i  263 (283)
                      +++++.+
T Consensus       158 ~~l~~~i  164 (165)
T cd01868         158 KQLLTEI  164 (165)
T ss_pred             HHHHHHh
Confidence            9999876

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.98  E-value=4.7e-31  Score=212.46  Aligned_cols=157  Identities=17%  Similarity=0.242  Sum_probs=134.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+++|++|||||||+ +++++.+. .+.+|.+.. ..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            479999999999999999 99999987 444565544 456777888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      ||++++++|+++..|+..+.+..  .+.|++||+||+|+.    .  .....+++.++++..+++++++||++|.|++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  153 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA----A--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEA  153 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHH
Confidence            99999999999999999988764  345668999999962    1  334467788888888999999999999999999


Q ss_pred             HHHHHHHH
Q 023335          256 FKFIMAKL  263 (283)
Q Consensus       256 f~~l~~~i  263 (283)
                      |+++++.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04138         154 FYTLVREI  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.98  E-value=3.3e-31  Score=219.38  Aligned_cols=167  Identities=20%  Similarity=0.281  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +||+|+|++|||||||+ +++++.+. .+.+|.+.++.. .+... +..+.+.+|||+|+++|..+++.+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            59999999999999999 99999988 555566666543 45554 7789999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~l  255 (283)
                      ||+++++||+++. .|+..+....++.|+|+||||+||....+ ....+..++++++++.+++ +++++||++|.||+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN-LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc-ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999996 69999887777777789999999732211 1123447788999999998 8999999999999999


Q ss_pred             HHHHHHHHhCCccc
Q 023335          256 FKFIMAKLFNLPWT  269 (283)
Q Consensus       256 f~~l~~~i~~~~~~  269 (283)
                      |+.+++.+......
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999876544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.98  E-value=2.8e-31  Score=214.38  Aligned_cols=157  Identities=21%  Similarity=0.406  Sum_probs=138.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC--CeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      +||+++|++|||||||+ +++++.+. ...+|.+.++..+.+.++  +..+.+++|||+|+++|..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999 99999888 556688888877777777  778999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |||++++++|+.+..|+..+.....+.|+++|+||+|+.   .  ...+..+++..+++.++++++++||++|.|++++|
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~---~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  155 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL---D--QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF  155 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc---c--ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            999999999999999999998877777779999999972   1  12334677888999999999999999999999999


Q ss_pred             HHHHHH
Q 023335          257 KFIMAK  262 (283)
Q Consensus       257 ~~l~~~  262 (283)
                      ++|...
T Consensus       156 ~~l~~~  161 (162)
T cd04106         156 EYLAEK  161 (162)
T ss_pred             HHHHHh
Confidence            998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=5.3e-31  Score=215.42  Aligned_cols=162  Identities=23%  Similarity=0.363  Sum_probs=136.8

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      |+|+|++|||||||+ ++.++.|.. +.++.+.. ....+.+++..+.+.+|||+|++.|..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            689999999999999 999999984 44455444 456677889999999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023335          181 TSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHNIN  251 (283)
Q Consensus       181 ~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  251 (283)
                      ++++||+++. .|+..+..+.++.|+||||||+|+.....       .....+..+++.++++.+++ .++++||++|.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            9999999996 69999998877888899999999732110       00122447788899999997 899999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 023335          252 VNKIFKFIMAKLFN  265 (283)
Q Consensus       252 v~~lf~~l~~~i~~  265 (283)
                      |+++|+.+++.+++
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01866 Rab2 Rab2 subfamily

Probab=99.98  E-value=6.5e-31  Score=214.14  Aligned_cols=161  Identities=22%  Similarity=0.380  Sum_probs=142.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +++++.+. ...++.|.++....+.+++..+.+.+||++|++++..+...+++++|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999 99999888 5556888888888888999899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ||+++++||+++..|+.+++.+. ++.|++|||||.|+.     .......+++..+++..++.++++||++++|++++|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~  158 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE-----SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF  158 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999998875 455668999999972     122344677888899999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      +++.+.+++
T Consensus       159 ~~~~~~~~~  167 (168)
T cd01866         159 INTAKEIYE  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999998865

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=5.5e-31  Score=215.58  Aligned_cols=161  Identities=24%  Similarity=0.355  Sum_probs=137.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+++|++|||||||+ ++.++.|...+++++.+.....+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            68999999999999999 99999998656655567777788889989999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023335          180 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHNI  250 (283)
Q Consensus       180 ~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~  250 (283)
                      +++++||+++. .|+..+....++.|.++||||+||.....       ...+.+..+++..+++..++ .|+++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            99999999985 79999987666667789999999732110       01234457889999999998 89999999999


Q ss_pred             CHHHHHHHHHH
Q 023335          251 NVNKIFKFIMA  261 (283)
Q Consensus       251 ~v~~lf~~l~~  261 (283)
                      ||+++|+.++-
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04116 Rab9 Rab9 subfamily

Probab=99.98  E-value=6.1e-31  Score=214.39  Aligned_cols=159  Identities=24%  Similarity=0.391  Sum_probs=139.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.+. ...++.+.++..+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            4699999999999999999 99999988 566788888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-----CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNI  250 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-----~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~  250 (283)
                      |||+++++||+.+..|+.++..+..     +.|.+|||||+|+.      .+....+++++++++++. +++++||++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  157 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP------ERQVSTEEAQAWCRENGDYPYFETSAKDAT  157 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc------ccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence            9999999999999999998876532     33557999999961      233457788999998885 79999999999


Q ss_pred             CHHHHHHHHHHHH
Q 023335          251 NVNKIFKFIMAKL  263 (283)
Q Consensus       251 ~v~~lf~~l~~~i  263 (283)
                      |++++|+++++.+
T Consensus       158 ~v~~~~~~~~~~~  170 (170)
T cd04116         158 NVAAAFEEAVRRV  170 (170)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04118 Rab24 Rab24 subfamily

Probab=99.98  E-value=7.4e-31  Score=218.45  Aligned_cols=166  Identities=24%  Similarity=0.364  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +||+|+|++|||||||+ +|+++.|.  .+.+|.+.++..+.+.+++..+.+.+||++|++++..+...+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            58999999999999999 99999987  3556888888888899999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      ||+++.++|+++..|++.+....++.|+++|+||+|+..... ....+..+++.+++..++++++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR-SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc-ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988766677789999999732111 1123335678888888899999999999999999999


Q ss_pred             HHHHHHhCCc
Q 023335          258 FIMAKLFNLP  267 (283)
Q Consensus       258 ~l~~~i~~~~  267 (283)
                      ++.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999987654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03110 Rab GTPase; Provisional

Probab=99.98  E-value=6.1e-31  Score=223.08  Aligned_cols=162  Identities=27%  Similarity=0.459  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +|+++.+. .+.+|.+.++..+.+.+++..+.+++||++|++++..++..++++++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999 99999988 667799999998999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||++++++|+++..|+..+...... .|+++||||+||.     ..+....++++.++..++++++++||++|.|++++
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~-----~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l  165 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN-----HLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA  165 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999887654 4557999999962     22334467888999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023335          256 FKFIMAKLFN  265 (283)
Q Consensus       256 f~~l~~~i~~  265 (283)
                      |+++++.+.+
T Consensus       166 f~~l~~~i~~  175 (216)
T PLN03110        166 FQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHH
Confidence            9999998866

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=9e-31  Score=212.44  Aligned_cols=160  Identities=26%  Similarity=0.447  Sum_probs=138.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ ++.++.+. ...+|.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            3689999999999999999 99999888 445677888888888889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~  254 (283)
                      |||+++++||+.+..|+..+..... +.|+++|+||+|+.     ..+....+++..+++.+++ .++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  156 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE-----EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEE  156 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence            9999999999999999999987654 45568999999972     1223446778889998886 689999999999999


Q ss_pred             HHHHHHHHH
Q 023335          255 IFKFIMAKL  263 (283)
Q Consensus       255 lf~~l~~~i  263 (283)
                      +|+++.+.+
T Consensus       157 ~~~~l~~~l  165 (165)
T cd01864         157 AFLLMATEL  165 (165)
T ss_pred             HHHHHHHhC
Confidence            999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=1.4e-30  Score=217.97  Aligned_cols=164  Identities=15%  Similarity=0.204  Sum_probs=134.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhccc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACKD  170 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~  170 (283)
                      +||+|+|++|||||||+ +++++.|. .+.||++.++....+.+++..+.+++|||+|.+.+...        ...++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999 99999988 56678887777777888999999999999997665322        2345789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEc
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSS  245 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~S  245 (283)
                      +|++|+|||+++++||+.+..|++.+....    .+.|+||||||+|+.    . .+.+..++++.++. .++++|+++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~e~S  155 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ----R-HRFAPRHVLSVLVRKSWKCGYLECS  155 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc----c-cccccHHHHHHHHHHhcCCcEEEec
Confidence            999999999999999999999999988763    445668999999962    2 22334556777754 5689999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCccc
Q 023335          246 ATHNINVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~~~~~  269 (283)
                      |++|.||+++|+.+++.++.....
T Consensus       156 ak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         156 AKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCCCCCHHHHHHHHHHHhhccCCC
Confidence            999999999999999998876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=1.3e-30  Score=211.59  Aligned_cols=155  Identities=17%  Similarity=0.260  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++++.|. .+.+|.+..+ ...+..++..+.+++|||+|+++|..+...+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            79999999999999999 99999987 4455655443 456667788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |+++++||+++..|++.+....    ++.|+++||||+|+.    . .+....+++..++..+++.|+++||++|+|+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~  155 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES----H-KREVSSNEGAACATEWNCAFMETSAKTNHNVQE  155 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc----c-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHH
Confidence            9999999999999998887653    345668999999962    1 233446677888888899999999999999999


Q ss_pred             HHHHHHH
Q 023335          255 IFKFIMA  261 (283)
Q Consensus       255 lf~~l~~  261 (283)
                      +|++|++
T Consensus       156 ~f~~l~~  162 (165)
T cd04140         156 LFQELLN  162 (165)
T ss_pred             HHHHHHh
Confidence            9999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=219.15  Aligned_cols=164  Identities=21%  Similarity=0.356  Sum_probs=144.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            3699999999999999999 99999888 556688999888888999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++.++|+.+..|+..+..... ..|.++|+||+||.     ..+....++++++++.++++++++||+++.||+++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~  159 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-----HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999998877654 44557999999962     22334577889999999999999999999999999


Q ss_pred             HHHHHHHHhCCc
Q 023335          256 FKFIMAKLFNLP  267 (283)
Q Consensus       256 f~~l~~~i~~~~  267 (283)
                      |+++++.++++.
T Consensus       160 f~~l~~~~~~~~  171 (210)
T PLN03108        160 FIKTAAKIYKKI  171 (210)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.9e-30  Score=209.97  Aligned_cols=158  Identities=16%  Similarity=0.259  Sum_probs=134.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++++.+...+ +|++ +...+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            59999999999999999 99999888444 4444 445667778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |++++++|+.+..|+..+.+..  .+.|.++||||+|+.    + ......+++..+++.++++++++||++|.|++++|
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  154 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE----S-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF  154 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHH
Confidence            9999999999999998887653  245668999999962    1 23344677888888899999999999999999999


Q ss_pred             HHHHHHHh
Q 023335          257 KFIMAKLF  264 (283)
Q Consensus       257 ~~l~~~i~  264 (283)
                      ++|++.+.
T Consensus       155 ~~l~~~~~  162 (164)
T smart00173      155 YDLVREIR  162 (164)
T ss_pred             HHHHHHHh
Confidence            99998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=1.5e-30  Score=210.16  Aligned_cols=158  Identities=24%  Similarity=0.398  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+++||++|++.|..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            59999999999999999 99999987 56668888888888889998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |++++++|+++..|+.+++... ++.|.+||+||+|+.    . ......+++..+++..++.++++||+++.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  155 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA----D-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFL  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc----h-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999999988765 455567999999962    1 233447788889999999999999999999999999


Q ss_pred             HHHHHH
Q 023335          258 FIMAKL  263 (283)
Q Consensus       258 ~l~~~i  263 (283)
                      ++++.+
T Consensus       156 ~~~~~~  161 (161)
T cd04113         156 KCARSI  161 (161)
T ss_pred             HHHHhC
Confidence            998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=1.6e-30  Score=212.16  Aligned_cols=159  Identities=27%  Similarity=0.472  Sum_probs=139.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-cchhhhcccCcEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILF  176 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~ad~iil  176 (283)
                      .+||+++|++|||||||+ +++.+.+. .+.++.+.++..+.+.+++..+.+++||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            589999999999999999 99999988 566688888888889999999999999999999886 578889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC---CcC
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NIN  251 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~---~~~  251 (283)
                      |||++++++|+.+..|++++..+.  .+.|.++|+||+|+.     ....+..+++.++++..+++|+++||++   +.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~  156 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR-----EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDH  156 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch-----hhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC
Confidence            999999999999999999998764  345668999999962     2233446778889999999999999999   999


Q ss_pred             HHHHHHHHHHHH
Q 023335          252 VNKIFKFIMAKL  263 (283)
Q Consensus       252 v~~lf~~l~~~i  263 (283)
                      ++++|..+++.+
T Consensus       157 i~~~f~~l~~~~  168 (170)
T cd04115         157 VEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=1.7e-30  Score=210.30  Aligned_cols=158  Identities=22%  Similarity=0.371  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC--ccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~--~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      +||+++|++|||||||+ ++..+  .+. ++.+|.|.++..+.+.++ +..+.+.+|||+|++.+..+...+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            59999999999999999 99865  566 556688899887777775 57799999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      +|||++++++|+++..|++.+.....+.|.++||||+|+.   +  .......+++.++..++++++++||++|.|++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  155 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA---D--KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEP  155 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc---c--ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHH
Confidence            9999999999999999999998877666778999999962   1  1223355667778888899999999999999999


Q ss_pred             HHHHHHHH
Q 023335          256 FKFIMAKL  263 (283)
Q Consensus       256 f~~l~~~i  263 (283)
                      |+.+++.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04101         156 FESLARAF  163 (164)
T ss_pred             HHHHHHHh
Confidence            99998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=3.1e-30  Score=208.48  Aligned_cols=158  Identities=16%  Similarity=0.228  Sum_probs=134.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +++++.+.. ..+|++.. ......+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            489999999999999999 999988874 44455543 455677888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      ||+++.++|+.+..|+..+.+..  .+.|++||+||+|+.    . ......+++.++++.++++++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  155 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE----H-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKA  155 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc----c-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHH
Confidence            99999999999999999988753  345668999999962    1 1223456788889988999999999999999999


Q ss_pred             HHHHHHHH
Q 023335          256 FKFIMAKL  263 (283)
Q Consensus       256 f~~l~~~i  263 (283)
                      |+++++.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04145         156 FHDLVRVI  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=3.7e-31  Score=216.04  Aligned_cols=169  Identities=21%  Similarity=0.296  Sum_probs=148.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ..+|++|||+.++|||+|+ .+..+.|. ++.||.. +-+...+.++ |+.+.+.+|||+||+.|..+++..|.++|+|+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            4799999999999999999 99999999 5555554 6667788895 99999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023335          176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~------~-~~~~~~~~~~~~~~~~~~~-~~~e~Sa  246 (283)
                      +||++.+++||+++. +|+.++++++++.|+||||+|.||..+..      . ....+..++++++|++.|+ .|+|+||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            999999999999985 89999999999999999999999853210      0 1123458899999999995 7999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCcc
Q 023335          247 THNINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i~~~~~  268 (283)
                      +++.|++++|+..+..++..+.
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999988765

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=8.5e-30  Score=215.29  Aligned_cols=167  Identities=26%  Similarity=0.443  Sum_probs=143.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+|+|++|||||||+ +++++.+....++.+.++....+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv   92 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV   92 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            4799999999999999999 999988877777888888888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHH-HHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          178 FDLTSRCTLNSIVG-WYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       178 ~D~~~~~s~~~~~~-~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ||++++++|+++.. |...+..+..  +.+++|||||+|+.    . ......++...+++.+++.|+++||++|.|+++
T Consensus        93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~----~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE----S-ERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999975 7777765532  34568999999962    1 122346777888888999999999999999999


Q ss_pred             HHHHHHHHHhCCcccc
Q 023335          255 IFKFIMAKLFNLPWTV  270 (283)
Q Consensus       255 lf~~l~~~i~~~~~~~  270 (283)
                      +|++|.+.+.+.+...
T Consensus       168 l~~~l~~~~~~~~~~~  183 (211)
T PLN03118        168 CFEELALKIMEVPSLL  183 (211)
T ss_pred             HHHHHHHHHHhhhhhh
Confidence            9999999998877433

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=6.1e-30  Score=206.65  Aligned_cols=160  Identities=26%  Similarity=0.486  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ ++.+..+. ...++.+.++....+.+++..+.+++||++|++.+..+...+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            59999999999999999 99999887 55678888888888889998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |+++.++++.+..|+..+..+. ++.|.++|+||+|+.    . ......+.++++++.++++++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~  155 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE----D-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFE  155 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc----c-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998876 455557999999962    1 123346678888888999999999999999999999


Q ss_pred             HHHHHHhC
Q 023335          258 FIMAKLFN  265 (283)
Q Consensus       258 ~l~~~i~~  265 (283)
                      ++.+.+.+
T Consensus       156 ~i~~~~~~  163 (164)
T smart00175      156 ELAREILK  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998864

Rab GTPases are implicated in vesicle trafficking.

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1.1e-29  Score=207.59  Aligned_cols=164  Identities=17%  Similarity=0.280  Sum_probs=136.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+++|++|||||||+ +++++.+...+.++..+.....+.+++..+.+.+|||+|++.|..++..+++++|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            59999999999999999 99999988444434344455677888889999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023335          180 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSATHNI  250 (283)
Q Consensus       180 ~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~-------~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~  250 (283)
                      ++++++|+++. .|++.+....++.|+++||||+||...-..       ....+..+++..+++.+++ +++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            99999999996 799998877667777899999997321100       0123446788999999986 79999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 023335          251 NVNKIFKFIMAKLF  264 (283)
Q Consensus       251 ~v~~lf~~l~~~i~  264 (283)
                      ||+++|+.+++.++
T Consensus       161 gi~~~f~~~~~~~~  174 (174)
T cd04135         161 GLKTVFDEAILAIL  174 (174)
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999998763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=9.2e-30  Score=205.25  Aligned_cols=157  Identities=24%  Similarity=0.450  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ ++++..+. .+.++.+.++..+.+.+++..+.+++||++|++++..+...+++++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999 99999988 66778899999999999998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |++++++|+.+..|+..+..... +.|.++|+||+|+.     .......++...+++..++.++++||+++.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS-----DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc-----ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999877654 45668999999962     2233446778888888899999999999999999999


Q ss_pred             HHHHH
Q 023335          258 FIMAK  262 (283)
Q Consensus       258 ~l~~~  262 (283)
                      ++.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            99875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=8.3e-30  Score=219.87  Aligned_cols=157  Identities=17%  Similarity=0.262  Sum_probs=132.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +|+++.|... .+|++ ++..+.+.+++..+.++||||+|++.|..+...++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            58999999999999999 9999999844 45554 677788889999999999999999999988888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhH----------CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCC
Q 023335          179 DLTSRCTLNSIVGWYSEARKW----------NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSAT  247 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~----------~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~  247 (283)
                      |+++++||+++..|++++...          ..+.|.||||||+|+.    . ...+..+++.+++.. .++.++++||+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~----~-~~~v~~~ei~~~~~~~~~~~~~evSAk  154 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD----F-PREVQRDEVEQLVGGDENCAYFEVSAK  154 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch----h-ccccCHHHHHHHHHhcCCCEEEEEeCC
Confidence            999999999999999998754          1345668999999972    1 123446667776654 46789999999


Q ss_pred             CCcCHHHHHHHHHHHH
Q 023335          248 HNINVNKIFKFIMAKL  263 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i  263 (283)
                      +|.||+++|++|++.+
T Consensus       155 tg~gI~elf~~L~~~~  170 (247)
T cd04143         155 KNSNLDEMFRALFSLA  170 (247)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=8.4e-30  Score=206.74  Aligned_cols=157  Identities=17%  Similarity=0.310  Sum_probs=130.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCC-cccchhhhcccCcEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad~iilv~  178 (283)
                      ||+++|++|||||||+ +++.+.+...+ ++++.. ..+.+.+++..+.+++||++|++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            6999999999999999 99998887444 454433 356677889999999999999986 3456777899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC-cCHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN-INVNK  254 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~~v~~  254 (283)
                      |+++++||+.+..|+..+.....   +.|.++||||+|+.     ....+..+++.++++..+++|+++||++| .||++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~  154 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL-----HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH-----HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHH
Confidence            99999999999999998887642   56668999999962     12233467788899999999999999999 59999


Q ss_pred             HHHHHHHHHh
Q 023335          255 IFKFIMAKLF  264 (283)
Q Consensus       255 lf~~l~~~i~  264 (283)
                      +|+.+++.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=1.7e-29  Score=204.04  Aligned_cols=159  Identities=29%  Similarity=0.471  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+++|++|||||||+ +++++.+.. ..++.+.++..+.+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            479999999999999999 999999884 677888888888999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ||+++.++|+.+..|+..+.... +..|.++++||+|+.    + ......++...+++.+++.++++||++|.|++++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  155 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE----S-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELF  155 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999998876 345557999999962    1 22334667788888889999999999999999999


Q ss_pred             HHHHHHH
Q 023335          257 KFIMAKL  263 (283)
Q Consensus       257 ~~l~~~i  263 (283)
                      ++|++.+
T Consensus       156 ~~l~~~l  162 (163)
T cd01860         156 TEIAKKL  162 (163)
T ss_pred             HHHHHHh
Confidence            9999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1.3e-29  Score=206.99  Aligned_cols=161  Identities=12%  Similarity=0.097  Sum_probs=135.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ..+||+++|++|||||||+ +|+++.|.  ++.+|++.++..+.+.+++..+.+.+||++|++.+..+...+++++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4689999999999999999 99999986  44568888887788888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+... .+.|.++|+||+||.    +. ......+..++++.+++ .++++||++|.|+++
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  156 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLD----EQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNE  156 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEccccc----cc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHH
Confidence            999999999999999999876432 245668999999962    11 22223456677888887 469999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|+.+++.+.+
T Consensus       157 lf~~l~~~~~~  167 (169)
T cd01892         157 LFTKLATAAQY  167 (169)
T ss_pred             HHHHHHHHhhC
Confidence            99999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=4.4e-29  Score=203.24  Aligned_cols=159  Identities=18%  Similarity=0.251  Sum_probs=134.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+++|.+|||||||+ ++.++.+.. +.+|++.. ..+.+.+++..+.+++|||+|+++|..+++.+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            479999999999999999 999999874 44455544 467778889899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINVNK  254 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~  254 (283)
                      ||++++++|+.+..|.+.+.+..  .+.|.++++||.|+.    . .+....++...+++.++ ++++++||++|.|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~  154 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE----D-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDE  154 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc----c-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence            99999999999999999987642  345667999999962    1 22334566778888888 7899999999999999


Q ss_pred             HHHHHHHHHh
Q 023335          255 IFKFIMAKLF  264 (283)
Q Consensus       255 lf~~l~~~i~  264 (283)
                      +|+++++.++
T Consensus       155 ~f~~i~~~~~  164 (168)
T cd04177         155 VFIDLVRQII  164 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=2e-29  Score=209.62  Aligned_cols=162  Identities=17%  Similarity=0.241  Sum_probs=144.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|.+|||||+|+ +|+.+.|.+.|.++..+.+.+.+.+++..+.+.|+||+|+++|..+...+++++|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            3689999999999999999 999999996666555588899999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH-CCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW-NQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~-~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |+++++.||+.+..+++.|.+. ..+. |.|+||||+||.     ..+.+..++++.++..++++|+|+||+.+.||+++
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~-----~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE-----RERQVSEEEGKALARSWGCAFIETSAKLNYNVDEV  156 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch-----hccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHH
Confidence            9999999999999999999543 2233 558999999972     23566699999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023335          256 FKFIMAKLFN  265 (283)
Q Consensus       256 f~~l~~~i~~  265 (283)
                      |..|++.+-.
T Consensus       157 F~~L~r~~~~  166 (196)
T KOG0395|consen  157 FYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=4.7e-29  Score=201.23  Aligned_cols=156  Identities=24%  Similarity=0.455  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ ++.++.+. ...++.+.++....+.+++..+.+.+||++|++.+..+...+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            59999999999999999 99999887 56678888887777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |+++.++|+.+..|++.+..+.  .+.|.++||||+|+.      ......++..++++..+++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  154 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE------NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAF  154 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc------ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHH
Confidence            9999999999999999998874  345558999999962      22334677888899999999999999999999999


Q ss_pred             HHHHHH
Q 023335          257 KFIMAK  262 (283)
Q Consensus       257 ~~l~~~  262 (283)
                      +++++.
T Consensus       155 ~~~~~~  160 (161)
T cd01863         155 EELVEK  160 (161)
T ss_pred             HHHHHh
Confidence            999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=3.6e-29  Score=212.88  Aligned_cols=160  Identities=17%  Similarity=0.216  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcc-cCcEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK-DAVAILF  176 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-~ad~iil  176 (283)
                      +||+++|++|||||||+ +|+++.+. ..++ +.+.++..+.+.+++..+.+.+|||+|++.  .....+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999 99988886 5554 444577788889999999999999999982  34455667 9999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++++||+.+..|+..+....  .+.|+|+|+||+|+.    . ...+..+++.+++..++++|+++||++|.||++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~----~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~  153 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA----R-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDE  153 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc----c-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            999999999999999999998764  356678999999962    1 233446677888998999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023335          255 IFKFIMAKLFNLP  267 (283)
Q Consensus       255 lf~~l~~~i~~~~  267 (283)
                      +|+++++.+....
T Consensus       154 l~~~l~~~~~~~~  166 (221)
T cd04148         154 LLEGIVRQIRLRR  166 (221)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999886444

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=5.8e-29  Score=202.61  Aligned_cols=161  Identities=24%  Similarity=0.371  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ ++.++.+. ...++.+.++..+.+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999 99999887 55567788888888889999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCC-----CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINV  252 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~-----~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v  252 (283)
                      |++++++|+++..|.+.+.....     +.|+++|+||+|+.   .  ......++...+++..+ .+++++||++|.|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  155 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE---E--KRQVSTKKAQQWCQSNGNIPYFETSAKEAINV  155 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc---c--ccccCHHHHHHHHHHcCCceEEEEECCCCCCH
Confidence            99999999999999988766543     45668999999972   1  12234666778888887 78999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 023335          253 NKIFKFIMAKLFNL  266 (283)
Q Consensus       253 ~~lf~~l~~~i~~~  266 (283)
                      +++|+++.+.+++.
T Consensus       156 ~~l~~~i~~~~~~~  169 (172)
T cd01862         156 EQAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988775

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=6.3e-29  Score=203.32  Aligned_cols=162  Identities=21%  Similarity=0.309  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      .||+++|++|||||||+ ++.++.|.+ +.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            59999999999999999 999999884 445665444 356778888999999999999999998888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335          179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSATHN  249 (283)
Q Consensus       179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~-------~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~  249 (283)
                      |++++++|+++. .|+..+++..++.|+++|+||+|+......       ....+...+++++++..+. .++++||++|
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence            999999999985 699999887777778899999997321100       0112335778888888875 7999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023335          250 INVNKIFKFIMAKL  263 (283)
Q Consensus       250 ~~v~~lf~~l~~~i  263 (283)
                      .|++++|++|.+.+
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=1.7e-28  Score=203.48  Aligned_cols=167  Identities=22%  Similarity=0.281  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      .||+|+|++|||||||+ ++..+.+. ...+|.+..+ ...+.+++..+.+.+||++|++.+....+.+++++|++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            59999999999999999 99988887 4444555444 346677888899999999999998888888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC-----cccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023335          179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-----LQWTIATQARAYAKAMKA-TLFFSSATHNIN  251 (283)
Q Consensus       179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-----~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  251 (283)
                      |+++.++|+.+. .|++.+....++.|+|+||||+|+.......     .+.+..+++..+++.+++ +||++||++|.|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  160 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG  160 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence            999999999996 6999998887777778999999973221111     223346778899999985 899999999999


Q ss_pred             HHHHHHHHHHHHhCCcc
Q 023335          252 VNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~~  268 (283)
                      |+++|+++.+.++....
T Consensus       161 v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         161 VDDVFEAATRAALLVRK  177 (187)
T ss_pred             HHHHHHHHHHHHhcccC
Confidence            99999999988876553

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04123 Rab21 Rab21 subfamily

Probab=99.96  E-value=1.6e-28  Score=197.67  Aligned_cols=158  Identities=27%  Similarity=0.486  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|.+|||||||+ +++++.+. ...++++.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999 99999887 44556667777777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |+++.++++.+..|++++...... .|+++|+||+|+.     .......++..++++..+++++++||++++|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~  155 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE-----RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFL  155 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999887654 4557999999962     1223346677788888899999999999999999999


Q ss_pred             HHHHHH
Q 023335          258 FIMAKL  263 (283)
Q Consensus       258 ~l~~~i  263 (283)
                      ++.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04123         156 SLAKRM  161 (162)
T ss_pred             HHHHHh
Confidence            998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04114 Rab30 Rab30 subfamily

Probab=99.96  E-value=2.6e-28  Score=198.40  Aligned_cols=160  Identities=24%  Similarity=0.426  Sum_probs=137.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ ++.++.+. ...++.+.++..+.+.+++..+.+.+||++|++.+......+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            4699999999999999999 99988877 556688888888888999999999999999999999888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++.++|+.+..|+.+++..... .|.++|+||+|+.    . ......+..+.+.+.....++++||++|.|++++
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~----~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA----E-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence            99999999999999999999887654 4448999999962    1 2233355567777777888999999999999999


Q ss_pred             HHHHHHHH
Q 023335          256 FKFIMAKL  263 (283)
Q Consensus       256 f~~l~~~i  263 (283)
                      |++|.+.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=7.2e-29  Score=202.34  Aligned_cols=152  Identities=16%  Similarity=0.186  Sum_probs=121.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ ++..+.+....||+|.++.  .+..  ..+.+++|||+|++++..+++.+++++|++|+|
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4689999999999999999 9998888776778887764  3333  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~  250 (283)
                      ||++++.+|+++..|+.++...  .++.|.+||+||+|+.    .   ....++++++++     ...+.++++||++|.
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~  156 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP----D---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD  156 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc----c---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence            9999999999998887776543  2456668999999962    1   122445555432     123468899999999


Q ss_pred             CHHHHHHHHHH
Q 023335          251 NVNKIFKFIMA  261 (283)
Q Consensus       251 ~v~~lf~~l~~  261 (283)
                      ||+++|++|.+
T Consensus       157 gv~~~~~~l~~  167 (168)
T cd04149         157 GLYEGLTWLSS  167 (168)
T ss_pred             ChHHHHHHHhc
Confidence            99999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=5.7e-28  Score=194.95  Aligned_cols=159  Identities=16%  Similarity=0.236  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++.+.+...+ ++++ +...+...+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            58999999999999999 99999888444 4544 344566778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |++++++|+++..|+..+....  .+.|+++|+||+|+.   .  ......++...+++.++++++++||++|.|++++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  154 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE---D--KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF  154 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc---c--ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence            9999999999999999888763  356668999999962   1  12233566777888889999999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      +++.+.+.+
T Consensus       155 ~~l~~~~~~  163 (164)
T cd04139         155 YDLVREIRQ  163 (164)
T ss_pred             HHHHHHHHh
Confidence            999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=5.5e-28  Score=196.45  Aligned_cols=161  Identities=20%  Similarity=0.284  Sum_probs=126.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+++|++|||||||+ ++.++.+...++++..++ .....+++..+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            48999999999999999 999999875555443333 3444567788999999999999888888888899999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHH
Q 023335          180 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIF  256 (283)
Q Consensus       180 ~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf  256 (283)
                      ++++++|+.+. .|++.++...++.|+++|+||+|+.   +........+++..+++.++  ..++++||++|.|++++|
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  156 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR---DGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF  156 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc---cccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence            99999999985 7999888776666778999999972   11111112344444444443  379999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      +.+.+.+..
T Consensus       157 ~~~~~~~~~  165 (166)
T cd01893         157 YYAQKAVLH  165 (166)
T ss_pred             HHHHHHhcC
Confidence            999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=9.7e-28  Score=203.27  Aligned_cols=167  Identities=23%  Similarity=0.357  Sum_probs=143.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      ......+||+++|++|||||||+ +++.+.+. .+.+|.+.++....+..++..+.+++|||+|++.|..++..++++++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            34445799999999999999999 99999887 66678899988888888889999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      ++++|||+++..||..+..|+..+.....+.|++++|||+|+.    +  ... ..+...+++..++.++++||++|.|+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~----~--~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v  156 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK----D--RQV-KARQITFHRKKNLQYYDISAKSNYNF  156 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc----c--ccC-CHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            9999999999999999999999998877666667899999962    1  112 22334577788899999999999999


Q ss_pred             HHHHHHHHHHHhCCcc
Q 023335          253 NKIFKFIMAKLFNLPW  268 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~~  268 (283)
                      +++|.+|++.+...+.
T Consensus       157 ~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        157 EKPFLWLARRLTNDPN  172 (215)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999999987764

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=2e-28  Score=199.79  Aligned_cols=156  Identities=17%  Similarity=0.199  Sum_probs=126.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      ||+++|++|||||||+ ++.++.+..+.+|.+.++.  .+.+  ..+.+++|||+|++.+..++..+++++|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            6899999999999999 9999887776778777664  3333  457899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC------CcEEEEcCCCCcCH
Q 023335          181 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK------ATLFFSSATHNINV  252 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~------~~~~e~Sa~~~~~v  252 (283)
                      +++++|+++..|+.++....  .+.|++||+||+||.    .   ....++++++++..+      +.++++||++|.||
T Consensus        77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  149 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA----G---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL  149 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc----c---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence            99999999999998887542  245668999999962    1   233555666554322      25778999999999


Q ss_pred             HHHHHHHHHHHhCCcc
Q 023335          253 NKIFKFIMAKLFNLPW  268 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~~  268 (283)
                      +++|++|.+.+.+.++
T Consensus       150 ~~~f~~l~~~~~~~~~  165 (169)
T cd04158         150 YEGLDWLSRQLVAAGV  165 (169)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=2.7e-28  Score=197.07  Aligned_cols=151  Identities=17%  Similarity=0.217  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+++|++|||||||+ ++..+.+..+.||+|.++.  .+..  ..+.+++||++|++++..++..+++++|++|+|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            48999999999999999 9988888877778887653  3333  45789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCHH
Q 023335          180 LTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINVN  253 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~  253 (283)
                      ++++++|+++..|+..+...  ..+.|++|++||+||..    .  ....+....+.    ...++.++++||++|+||+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~  150 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN----A--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLY  150 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC----C--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence            99999999998888777543  23456689999999621    1  11112222221    1223456789999999999


Q ss_pred             HHHHHHHH
Q 023335          254 KIFKFIMA  261 (283)
Q Consensus       254 ~lf~~l~~  261 (283)
                      ++|++|.+
T Consensus       151 ~~~~~l~~  158 (159)
T cd04150         151 EGLDWLSN  158 (159)
T ss_pred             HHHHHHhc
Confidence            99999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=2e-28  Score=200.96  Aligned_cols=155  Identities=17%  Similarity=0.209  Sum_probs=120.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ ++..+.+..+.||++.++..  +..  ..+.+++|||+|++.+..++..|++++|++|+|
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            3689999999999999999 99888887667788877643  333  357899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~  250 (283)
                      ||++++++++++..|+..+...  ..+.|++|||||+||.+..       ..+++.+..     +...+.++++||++|.
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  160 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM-------KAAEITEKLGLHSIRDRNWYIQPTCATSGD  160 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-------CHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence            9999999999999888877543  2345668999999972211       112222111     1223346689999999


Q ss_pred             CHHHHHHHHHHHHh
Q 023335          251 NVNKIFKFIMAKLF  264 (283)
Q Consensus       251 ~v~~lf~~l~~~i~  264 (283)
                      ||+++|++|.+.+.
T Consensus       161 gv~e~~~~l~~~~~  174 (175)
T smart00177      161 GLYEGLTWLSNNLK  174 (175)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999987753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=3e-28  Score=201.05  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=121.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ ++..+.+..+.||.|.++.  .+..  ..+.+++||++|++++..++..+++++|++|+|
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V   91 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4689999999999999999 9998888766678887653  3333  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC--------cEEEEcCC
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--------TLFFSSAT  247 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~e~Sa~  247 (283)
                      ||++++++++++..|+..+...  .++.|++|||||+|+..    .   ...++   +.+..++        .++++||+
T Consensus        92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~----~---~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~  161 (181)
T PLN00223         92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----A---MNAAE---ITDKLGLHSLRQRHWYIQSTCAT  161 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC----C---CCHHH---HHHHhCccccCCCceEEEeccCC
Confidence            9999999999988777776432  23556689999999622    1   11222   3333333        35579999


Q ss_pred             CCcCHHHHHHHHHHHHhCC
Q 023335          248 HNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~  266 (283)
                      +|+||+++|++|.+.+.++
T Consensus       162 ~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        162 SGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCCCHHHHHHHHHHHHhhc
Confidence            9999999999999988654

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=1.9e-27  Score=193.50  Aligned_cols=160  Identities=21%  Similarity=0.335  Sum_probs=131.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|++|||||||+ +++++.+. .+.++.. +.....+..++..+.+++||++|++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            69999999999999999 99999986 4444443 444556677888999999999999999888888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC------cccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023335          179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD------LQWTIATQARAYAKAMKA-TLFFSSATHNI  250 (283)
Q Consensus       179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~------~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~  250 (283)
                      |++++++|.... .|+..+..+..+.|.++||||+|+.......      ......+++.+++..+++ +++++||++|+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            999999998875 6999888887777779999999973221110      012236778888888888 89999999999


Q ss_pred             CHHHHHHHHHH
Q 023335          251 NVNKIFKFIMA  261 (283)
Q Consensus       251 ~v~~lf~~l~~  261 (283)
                      |++++|++|++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00154 Rab Rab family

Probab=99.96  E-value=1.6e-27  Score=190.37  Aligned_cols=155  Identities=26%  Similarity=0.494  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+++|.+|||||||+ ++.++.+. .+.+|.+.++....+.+++..+.+.+||++|++.+......+++++|++++||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999 99999988 55678899998889999888899999999999999899999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |++++++++.+..|+..+.... ...|.++|+||+|+.     .......++..+++...+++++++||+++.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  155 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE-----DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQ  155 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc-----ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            9999999999999999998887 455668999999962     1233447788888888899999999999999999999


Q ss_pred             HHH
Q 023335          258 FIM  260 (283)
Q Consensus       258 ~l~  260 (283)
                      +|.
T Consensus       156 ~i~  158 (159)
T cd00154         156 SLA  158 (159)
T ss_pred             HHh
Confidence            986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=1.9e-28  Score=199.00  Aligned_cols=151  Identities=14%  Similarity=0.120  Sum_probs=123.3

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      |+++|++|||||||+ +++++.+. .+.||.|.+.    ..+++..+.+.+||++|+++|..++..+++++|++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            799999999999999 99998877 5566777653    33455678899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc-h--HHHHHHHHHHcCCcEEEEcCCC------CcC
Q 023335          181 TSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT-I--ATQARAYAKAMKATLFFSSATH------NIN  251 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~-~--~~~~~~~~~~~~~~~~e~Sa~~------~~~  251 (283)
                      ++..+|..++.|+.++....++.|+++||||+|+..    ..... .  ..++..++++.++.++++||++      ++|
T Consensus        78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~  153 (164)
T cd04162          78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA----ARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA  153 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC----CCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence            999999999999998876556667789999999632    11110 1  1235667777788899988888      999


Q ss_pred             HHHHHHHHHH
Q 023335          252 VNKIFKFIMA  261 (283)
Q Consensus       252 v~~lf~~l~~  261 (283)
                      |+++|+.++.
T Consensus       154 v~~~~~~~~~  163 (164)
T cd04162         154 VKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHhc
Confidence            9999998874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=2.2e-27  Score=198.57  Aligned_cols=163  Identities=15%  Similarity=0.211  Sum_probs=132.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      ||+++|++|||||||+ +++++.+...+..+..++..+.+.+++..+.+++||++|++.|..++..+++++|++|+|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            7999999999999999 999999885444333356667788888889999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCCcCHHHHHH
Q 023335          181 TSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      ++.++|+.+..|+..+.....  +.|.|||+||+|+.   + .......++..+.+. ..++.++++||++|.|++++|+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~---~-~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL---E-EERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc---c-ccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHH
Confidence            999999999999999887743  45668999999962   2 112222333333333 4567899999999999999999


Q ss_pred             HHHHHHhCCcc
Q 023335          258 FIMAKLFNLPW  268 (283)
Q Consensus       258 ~l~~~i~~~~~  268 (283)
                      ++++.+...++
T Consensus       157 ~l~~~~~~~~~  167 (198)
T cd04147         157 ELLRQANLPYN  167 (198)
T ss_pred             HHHHHhhcccc
Confidence            99998865554

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=5e-28  Score=200.05  Aligned_cols=166  Identities=16%  Similarity=0.171  Sum_probs=132.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ ++..+.+....+|.|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            689999999999999999 9999888866788887776666655 44678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH------cCCcEEEEcCCCC
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------MKATLFFSSATHN  249 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~  249 (283)
                      ||+++.++++.+..|+.++....  .+.|.+||+||+|+.    ..   ...++...++..      .+++++++||++|
T Consensus        83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  155 (183)
T cd04152          83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP----NA---LSVSEVEKLLALHELSASTPWHVQPACAIIG  155 (183)
T ss_pred             EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc----cc---CCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence            99999999999999998887653  345668999999962    11   112333333321      1245789999999


Q ss_pred             cCHHHHHHHHHHHHhCCcccccc
Q 023335          250 INVNKIFKFIMAKLFNLPWTVKR  272 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~~~~~~~~  272 (283)
                      .|++++|++|.+.+.+.....++
T Consensus       156 ~gi~~l~~~l~~~l~~~~~~~~~  178 (183)
T cd04152         156 EGLQEGLEKLYEMILKRRKMLRQ  178 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999766554443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=2e-27  Score=198.93  Aligned_cols=149  Identities=21%  Similarity=0.276  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-----CeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-----GARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      +||+++|+++||||||+ +++++.|. .+.+|+|.++..+.+.++     +..+.+++|||+|+++|..++..||+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999 99999998 566688988877777764     578999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhHC--------------------CCCceEEEeecCCCCCCCCCCcccchHHHHHHH
Q 023335          174 ILFMFDLTSRCTLNSIVGWYSEARKWN--------------------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY  233 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~~~~~~i~~~~--------------------~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~  233 (283)
                      +|+|||+++++||+++..|++++....                    .+.|+||||||+||..+- .............+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r-~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK-ESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc-ccchHHHhhHhhhH
Confidence            999999999999999999999997642                    234557999999972110 00011123345677


Q ss_pred             HHHcCCcEEEEcCCCCc
Q 023335          234 AKAMKATLFFSSATHNI  250 (283)
Q Consensus       234 ~~~~~~~~~e~Sa~~~~  250 (283)
                      |++.+++.++.++.+..
T Consensus       160 a~~~~~~~i~~~c~~~~  176 (202)
T cd04102         160 AEQGNAEEINLNCTNGR  176 (202)
T ss_pred             HHhcCCceEEEecCCcc
Confidence            89999999998887443

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=7.3e-28  Score=198.93  Aligned_cols=157  Identities=17%  Similarity=0.199  Sum_probs=120.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ ++..+.+....||.+.++.  .+..  ..+.+++|||+|++.+..++..+++++|++|+|
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            3689999999999999999 9988888776678887654  3333  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHH-HHH----HHHcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQA-RAY----AKAMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~-~~~----~~~~~~~~~e~Sa~~~~  250 (283)
                      ||++++++|+++..|+.++...  ..+.|.+||+||.|+.    ..   ...+++ ..+    ++...+.++++||++|+
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~----~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~  164 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP----NA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ  164 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC----CC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence            9999999999998777766432  2345668999999962    11   111222 111    11122346689999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 023335          251 NVNKIFKFIMAKLFNL  266 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~  266 (283)
                      |++++|++|.+.+..+
T Consensus       165 gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        165 GLYEGLDWLSANIKKS  180 (182)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999877653

>cd00876 Ras Ras family

Probab=99.95  E-value=4.3e-27  Score=188.89  Aligned_cols=156  Identities=20%  Similarity=0.337  Sum_probs=133.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      ||+++|++|||||||+ +++++.+. ...++++ +...+.+.+++..+.+++||++|++.+..+...+++++|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            7999999999999999 99988877 4444555 5666777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          180 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      +++.++++++..|+..+.....  ..|.++|+||+|+.    . ......+++..+++.++++++++||+++.|++++|+
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~  154 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE----N-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFK  154 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc----c-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Confidence            9999999999999999888765  55668999999962    1 233446788888898889999999999999999999


Q ss_pred             HHHHHH
Q 023335          258 FIMAKL  263 (283)
Q Consensus       258 ~l~~~i  263 (283)
                      +|++.+
T Consensus       155 ~l~~~i  160 (160)
T cd00876         155 LLVREI  160 (160)
T ss_pred             HHHhhC
Confidence            998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.95  E-value=1e-26  Score=191.26  Aligned_cols=164  Identities=18%  Similarity=0.246  Sum_probs=136.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      .||+++|.+|||||||+ ++.++.+. ...+|++..+ ...+.+++..+.+++||++|+++|..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            68999999999999999 99999887 4555655444 466677888889999999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |+++.++|+.+..|+..+....  .+.|.|+|+||+|+.    . ......++...+++.++++++++||+++.|+.++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  155 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH----T-QRQVSTEEGKELAESWGAAFLESSARENENVEEAF  155 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh----h-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999988887753  345678999999962    1 12233556777888888999999999999999999


Q ss_pred             HHHHHHHhCCcccc
Q 023335          257 KFIMAKLFNLPWTV  270 (283)
Q Consensus       257 ~~l~~~i~~~~~~~  270 (283)
                      +++.+.+...+...
T Consensus       156 ~~l~~~~~~~~~~~  169 (180)
T cd04137         156 ELLIEEIEKVENPL  169 (180)
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999987765443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.95  E-value=8.4e-27  Score=208.85  Aligned_cols=205  Identities=17%  Similarity=0.141  Sum_probs=153.2

Q ss_pred             hhhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceeeE----EEEEcCCCCcHHHhH
Q 023335           42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLK----ISLLGDCQIGKTSFV  117 (283)
Q Consensus        42 ~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~K----I~vlG~~~vGKSSLi  117 (283)
                      --+++++|.||+||.+|.++.++...     +|..+..|.++         +...-..++|    |.|||.||||||||+
T Consensus       110 ~~~~~~~a~gg~gg~gn~~f~~~~~~-----~p~~~~~g~~g---------~~~~~~lelk~~adVglVG~PNaGKSTLl  175 (335)
T PRK12299        110 HGQRFLVAKGGKGGLGNAHFKSSTNR-----APRYATPGEPG---------EERWLRLELKLLADVGLVGLPNAGKSTLI  175 (335)
T ss_pred             CCcEEEEecCCCCcCCchhhccccCC-----CCccccCCCCC---------cEEEEEEEEcccCCEEEEcCCCCCHHHHH
Confidence            35789999999999999888877665     47777777666         3333333444    679999999999999


Q ss_pred             -hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhh---cccCcEEEEEEECCChhhHHH
Q 023335          118 -KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKDAVAILFMFDLTSRCTLNS  188 (283)
Q Consensus       118 -~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~---~~~ad~iilv~D~~~~~s~~~  188 (283)
                       ++.+.+.. ..++.++.......+.+.+ ...+.+||+||..+    ...+...|   +++++++|+|+|+++.+++++
T Consensus       176 n~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~  254 (335)
T PRK12299        176 SAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVED  254 (335)
T ss_pred             HHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHH
Confidence             99887655 6677555555555666532 23578999999643    22344444   457999999999999889999


Q ss_pred             HHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          189 IVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       189 ~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      +..|.+++..+.+   +.|.+||+||+|+.   +.  .....+..+.+++..+.+++++||++++||+++|++|.+.+.+
T Consensus       255 ~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~---~~--~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        255 YKTIRNELEKYSPELADKPRILVLNKIDLL---DE--EEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHhhhhcccCCeEEEEECcccC---Cc--hhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            9999999998854   45668999999962   11  1122334555566677899999999999999999999988765


Q ss_pred             C
Q 023335          266 L  266 (283)
Q Consensus       266 ~  266 (283)
                      .
T Consensus       330 ~  330 (335)
T PRK12299        330 A  330 (335)
T ss_pred             h
Confidence            3

>cd04154 Arl2 Arl2 subfamily

Probab=99.95  E-value=8.6e-27  Score=190.70  Aligned_cols=152  Identities=19%  Similarity=0.216  Sum_probs=120.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ ++.+..+....+|.|...  ..+.++  .+.+++|||+|++.+..++..+++++|++++|
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV   88 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            4689999999999999999 999886656666777543  345555  47789999999999988999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~  250 (283)
                      ||++++.+|+++..|+..+...  ..+.|++||+||+|+..    .   ...+++.++.+     ..+++++++||++|.
T Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG----A---LSEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc----C---CCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            9999999999998888887543  24566689999999621    1   12344444442     345689999999999


Q ss_pred             CHHHHHHHHHH
Q 023335          251 NVNKIFKFIMA  261 (283)
Q Consensus       251 ~v~~lf~~l~~  261 (283)
                      |++++|++++.
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.94  E-value=9.7e-27  Score=187.46  Aligned_cols=154  Identities=17%  Similarity=0.228  Sum_probs=117.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      ||+++|++|||||||+ ++.++.+....+|.+.++.  .+..+ ..+.+.+||++|++.+...+..+++++|++|+|||+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            6899999999999999 9999988766777776543  33333 457899999999999988899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHH--HHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          181 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQ--ARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ++..++..+..|+.++.+..  .+.|.++|+||+|+...   .........  ...++...++.++++||++|+||+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            99999999988888876532  35566899999996211   111111111  122223334568999999999999999


Q ss_pred             HHHHH
Q 023335          257 KFIMA  261 (283)
Q Consensus       257 ~~l~~  261 (283)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=3.9e-26  Score=200.53  Aligned_cols=141  Identities=24%  Similarity=0.339  Sum_probs=118.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC-------------eEEEEEEEeCCCCCCc
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-------------ARIAFSIWDVGGDSRS  160 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~-------------~~~~l~i~Dt~G~~~~  160 (283)
                      .....+||+|+|+.|||||||+ +|+++.|. .+.+|+|.++..+.+.+++             ..+.++||||+|+++|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            3445799999999999999999 99999998 5567999998878777652             5688999999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-------------CCceEEEeecCCCCCCCCCCc-cc--
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-------------TAIPILIGTKFDDFVRLPPDL-QW--  224 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-------------~~~~ilvgnK~DL~~~l~~~~-~~--  224 (283)
                      ..++..|+++++++|+|||+++++||+++..|++++.....             +.|+||||||+||.   .... +.  
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~---~~~~~r~~s  173 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA---PKEGTRGSS  173 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc---ccccccccc
Confidence            99999999999999999999999999999999999987631             24557999999972   2111 11  


Q ss_pred             -chHHHHHHHHHHcCC
Q 023335          225 -TIATQARAYAKAMKA  239 (283)
Q Consensus       225 -~~~~~~~~~~~~~~~  239 (283)
                       +..+++++||+++++
T Consensus       174 ~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        174 GNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccHHHHHHHHHHcCC
Confidence             247899999999884

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-28  Score=192.93  Aligned_cols=165  Identities=18%  Similarity=0.354  Sum_probs=151.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+|++|+|..+|||||+| +|+.+-|. ++..|+|+++....+.++++.+.+.+||++|+++|..+...||++|.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            45799999999999999999 99999999 55569999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+-+|+.||+.+..|++++.......|.++|-||+||   +.+  ......+++.+++.+++.++.+|++...||.++
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDl---ved--s~~~~~evE~lak~l~~RlyRtSvked~NV~~v  172 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDL---VED--SQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV  172 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchh---hHh--hhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence            999999999999999999999998888888999999998   222  334578899999999999999999999999999


Q ss_pred             HHHHHHHHhCCc
Q 023335          256 FKFIMAKLFNLP  267 (283)
Q Consensus       256 f~~l~~~i~~~~  267 (283)
                      |.+|++.+.++.
T Consensus       173 F~YLaeK~~q~~  184 (246)
T KOG4252|consen  173 FAYLAEKLTQQK  184 (246)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887655

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.94  E-value=3.2e-26  Score=187.66  Aligned_cols=152  Identities=17%  Similarity=0.218  Sum_probs=119.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      .+||+++|++|||||||+ ++..+.+....+|.+.++.  .+.++  .+.+.+||++|++.+...+..+++++|++++||
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~   90 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI   90 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence            589999999999999999 9999888876777776653  33444  477999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINV  252 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v  252 (283)
                      |+++++++.....|+.++.+..  .+.|+++++||+|+....      ...+..+.+.    +..+++++++||++|+||
T Consensus        91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi  164 (174)
T cd04153          91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TPAEISESLGLTSIRDHTWHIQGCCALTGEGL  164 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CHHHHHHHhCcccccCCceEEEecccCCCCCH
Confidence            9999999998888777775442  345668999999962211      1112122222    234567899999999999


Q ss_pred             HHHHHHHHH
Q 023335          253 NKIFKFIMA  261 (283)
Q Consensus       253 ~~lf~~l~~  261 (283)
                      +++|++|.+
T Consensus       165 ~e~~~~l~~  173 (174)
T cd04153         165 PEGLDWIAS  173 (174)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=1.3e-25  Score=184.31  Aligned_cols=143  Identities=24%  Similarity=0.371  Sum_probs=123.8

Q ss_pred             Cccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC
Q 023335          122 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  200 (283)
Q Consensus       122 ~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~  200 (283)
                      +.|. .+.+|.|.++..+.+.+++..+.+.||||+|++++..++..|+++||++|+|||+++++||+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            4566 566799999998999999999999999999999999999999999999999999999999999999999997765


Q ss_pred             C-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023335          201 Q-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       201 ~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~  269 (283)
                      . ..|+||||||+||.     ..+.+..+++..+++.+++.|+++||++|.||+++|++|++.+.+.+..
T Consensus        83 ~~~~piilVgNK~DL~-----~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 GKDVIIALVGNKTDLG-----DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            3 44557999999972     1223446778888999999999999999999999999999999876644

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.94  E-value=9.4e-26  Score=201.88  Aligned_cols=200  Identities=17%  Similarity=0.144  Sum_probs=149.8

Q ss_pred             hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceee----EEEEEcCCCCcHHHhH-
Q 023335           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV-  117 (283)
Q Consensus        43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~----KI~vlG~~~vGKSSLi-  117 (283)
                      -+++++|.||.||.++.++.++...     +|..+..|.++         +...-..++    .|+++|.+|||||||+ 
T Consensus       110 ~~~~~~a~gg~gg~gn~~f~~~~~~-----~p~~~~~g~~g---------~~~~~~lelk~~adV~lvG~pnaGKSTLl~  175 (329)
T TIGR02729       110 GQRFVVAKGGRGGLGNAHFKSSTNR-----APRFATPGEPG---------EERWLRLELKLLADVGLVGLPNAGKSTLIS  175 (329)
T ss_pred             CcEEEecCCCCCCCCcccccCccCC-----CCcccCCCCCC---------cEEEEEEEeeccccEEEEcCCCCCHHHHHH
Confidence            5789999999999999888877665     36777777666         222222333    5779999999999999 


Q ss_pred             hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhcc---cCcEEEEEEECCCh---hhH
Q 023335          118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---DAVAILFMFDLTSR---CTL  186 (283)
Q Consensus       118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~~---~ad~iilv~D~~~~---~s~  186 (283)
                      ++.+.+.. ..++.+........+.+++ ...+.+||+||..+    ...+...|++   +++++++|+|+++.   +++
T Consensus       176 ~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~  254 (329)
T TIGR02729       176 AVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI  254 (329)
T ss_pred             HHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH
Confidence            99987755 6666444444445555554 35678999999753    2245555544   69999999999987   788


Q ss_pred             HHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          187 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       187 ~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +++..|.+++..+.+   +.|.+||+||+|+   ...   ....+..+.+++.++.+++++||++++|++++++++.+.+
T Consensus       255 e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL---~~~---~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       255 EDYEIIRNELKKYSPELAEKPRIVVLNKIDL---LDE---EELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHHHhhhhhccCCEEEEEeCccC---CCh---HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            899999999887753   5677899999996   221   2234556667777788999999999999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04157 Arl6 Arl6 subfamily

Probab=99.94  E-value=3.1e-26  Score=184.68  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcc-c-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +|+++|++|||||||+ ++.+..+ . ...||.|....  .+.  ...+.+++|||+|++++..++..+++++|++|+||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            5899999999999999 9998764 3 45567775543  222  34577899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH--HcCCcEEEEcCCCCcCH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--AMKATLFFSSATHNINV  252 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~e~Sa~~~~~v  252 (283)
                      |+++..+|..+..|+..+....    .+.|.++|+||+|+.    .........+...+..  ...+.++++||++|.|+
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~----~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv  152 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP----DALTAVKITQLLGLENIKDKPWHIFASNALTGEGL  152 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc----CCCCHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence            9999999999888888876531    345668999999962    1111111111111111  12345889999999999


Q ss_pred             HHHHHHHHH
Q 023335          253 NKIFKFIMA  261 (283)
Q Consensus       253 ~~lf~~l~~  261 (283)
                      +++|++|.+
T Consensus       153 ~~~~~~l~~  161 (162)
T cd04157         153 DEGVQWLQA  161 (162)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=3.1e-26  Score=184.56  Aligned_cols=150  Identities=20%  Similarity=0.262  Sum_probs=113.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      ||+++|+++||||||+ ++..+.+....+|.+.++.  .+..  ..+.+++|||+|++.+..++..+++++|++|+|||+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            6899999999999999 9988887766677776653  3333  457899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHh-H-CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCHHH
Q 023335          181 TSRCTLNSIVGWYSEARK-W-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~-~-~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +++.++.....|+..+.+ . ..+.|.+||+||+|+..    ..  ...+....+.    +..+.+++++||++|.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~----~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  150 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG----AL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE  150 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC----CC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHH
Confidence            999988877666655433 2 23566689999999621    11  1111111111    12235699999999999999


Q ss_pred             HHHHHHH
Q 023335          255 IFKFIMA  261 (283)
Q Consensus       255 lf~~l~~  261 (283)
                      +|++|++
T Consensus       151 l~~~l~~  157 (158)
T cd04151         151 GMDWLVN  157 (158)
T ss_pred             HHHHHhc
Confidence            9999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=8e-25  Score=200.83  Aligned_cols=203  Identities=14%  Similarity=0.164  Sum_probs=151.3

Q ss_pred             hhhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceee----EEEEEcCCCCcHHHhH
Q 023335           42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV  117 (283)
Q Consensus        42 ~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~----KI~vlG~~~vGKSSLi  117 (283)
                      -.+++++|.||+||.++.++.++....     |..++.|.++         +...-..++    .|+++|.+|||||||+
T Consensus       110 ~~~~~~va~GG~gG~gn~~F~~s~~~~-----p~~~~~G~~g---------e~~~~~lelk~~adVglVG~pNaGKSTLL  175 (424)
T PRK12297        110 PGQEVVVAKGGRGGRGNAHFATSTNQA-----PRIAENGEPG---------EERELRLELKLLADVGLVGFPNVGKSTLL  175 (424)
T ss_pred             CCcEEEEECCCCCCcCchhhcCCCCCC-----CCcCCCCCCC---------eEeEEEEeecccCcEEEEcCCCCCHHHHH
Confidence            368899999999999998888776654     6677777665         222222333    5779999999999999


Q ss_pred             -hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhc---ccCcEEEEEEECCCh---hh
Q 023335          118 -KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSR---CT  185 (283)
Q Consensus       118 -~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~ad~iilv~D~~~~---~s  185 (283)
                       ++++.+.. ..++.+........+.+++ ...+.+||+||...    ...+...|+   .+++++|+|+|+++.   ++
T Consensus       176 n~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp  254 (424)
T PRK12297        176 SVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDP  254 (424)
T ss_pred             HHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCCh
Confidence             99987765 5666444444444454441 34588999999643    334555554   459999999999865   78


Q ss_pred             HHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          186 LNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       186 ~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      ++++..|.+++..+.+   ..|.|||+||+||    +.     ..+..+++++.++.+++++||++++|+++++++|.+.
T Consensus       255 ~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL----~~-----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~  325 (424)
T PRK12297        255 IEDYEKINKELKLYNPRLLERPQIVVANKMDL----PE-----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAEL  325 (424)
T ss_pred             HHHHHHHHHHHhhhchhccCCcEEEEEeCCCC----cC-----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            8888899999988754   4566899999996    11     1344566677777889999999999999999999998


Q ss_pred             HhCCcc
Q 023335          263 LFNLPW  268 (283)
Q Consensus       263 i~~~~~  268 (283)
                      +.+.+.
T Consensus       326 l~~~~~  331 (424)
T PRK12297        326 LEETPE  331 (424)
T ss_pred             HHhCcc
Confidence            877654

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.93  E-value=3.3e-25  Score=178.26  Aligned_cols=149  Identities=17%  Similarity=0.205  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      ||+++|.+|||||||+ +++++.+....+|.+....  .+.++  .+.+.+||++|++.+...+..+++++|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            7999999999999999 9999986666667776553  34444  46789999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCcCHH
Q 023335          181 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNINVN  253 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~  253 (283)
                      ++++++.....|+..+....  .+.|.++|+||+|+.   ...    ..++..+..     ....++++++||++|.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  149 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP---GAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLD  149 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc---ccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHH
Confidence            99999999988888776642  355668999999962   111    122222222     2234679999999999999


Q ss_pred             HHHHHHHH
Q 023335          254 KIFKFIMA  261 (283)
Q Consensus       254 ~lf~~l~~  261 (283)
                      ++|++|..
T Consensus       150 ~~~~~l~~  157 (158)
T cd00878         150 EGLDWLLQ  157 (158)
T ss_pred             HHHHHHhh
Confidence            99999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.93  E-value=7e-25  Score=181.90  Aligned_cols=154  Identities=16%  Similarity=0.168  Sum_probs=121.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ...||+++|++|||||||+ ++.++.+..+.+|.+...  ..+.+++  +.+.+||++|++.+..++..+++++|++++|
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4789999999999999999 999888766666666543  3555554  5688999999999888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH----------------cCC
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----------------MKA  239 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~----------------~~~  239 (283)
                      +|+++.++|+....|+.++....  .+.|+++++||+|+..       ....++++++.+.                ..+
T Consensus        94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (190)
T cd00879          94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSEEELRQALGLYGTTTGKGVSLKVSGIRPI  166 (190)
T ss_pred             EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCHHHHHHHhCcccccccccccccccCceeE
Confidence            99999999998888888876542  3466689999999621       2224455555432                224


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          240 TLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      .++++||++|+|++++|++|.+.+
T Consensus       167 ~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         167 EVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EEEEeEecCCCChHHHHHHHHhhC
Confidence            689999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.92  E-value=7e-25  Score=178.53  Aligned_cols=151  Identities=15%  Similarity=0.182  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +|+++|++|||||||+ ++.+. +. .+.+|.|...  ..+..+  .+.+++||++|++.+..++..|++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999 99877 55 6667777653  344444  4778999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccc-h--HHHHHHHHHHcC--CcEEEEcCCCC---
Q 023335          180 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWT-I--ATQARAYAKAMK--ATLFFSSATHN---  249 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~-~--~~~~~~~~~~~~--~~~~e~Sa~~~---  249 (283)
                      +++.++|+++..|+..+.+..  .+.|++||+||+|+.    ...... .  ...+..++++.+  +.++++||++|   
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~----~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~  151 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK----NALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK  151 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc----CCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence            999999999999999887653  355668999999962    221111 1  112234443333  45667999998   


Q ss_pred             ---cCHHHHHHHHHH
Q 023335          250 ---INVNKIFKFIMA  261 (283)
Q Consensus       250 ---~~v~~lf~~l~~  261 (283)
                         .|+++.|+||.+
T Consensus       152 ~~~~g~~~~~~wl~~  166 (167)
T cd04161         152 KIDPSIVEGLRWLLA  166 (167)
T ss_pred             ccccCHHHHHHHHhc
Confidence               899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.92  E-value=4.3e-25  Score=179.06  Aligned_cols=149  Identities=17%  Similarity=0.204  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcc------c-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      +|+++|++|||||||+ ++.+...      . ...+|.+.++.  .+.++  ...+.+|||+|++.+..++..+++++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999 9875432      1 33456666653  44454  4678999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------cCCcEEEE
Q 023335          174 ILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------MKATLFFS  244 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~e~  244 (283)
                      +++|||+++.+++.....|+..+.+..  .+.|.++|+||+|+..    .   ...++..++.+.       .+++++++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD----A---LSVEEIKEVFQDKAEEIGRRDCLVLPV  149 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc----C---CCHHHHHHHhccccccccCCceEEEEe
Confidence            999999999999999988888876542  3556689999999621    1   112333333332       24579999


Q ss_pred             cCCCCcCHHHHHHHHHH
Q 023335          245 SATHNINVNKIFKFIMA  261 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~  261 (283)
                      ||++|.|++++|++|.+
T Consensus       150 Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         150 SALEGTGVREGIEWLVE  166 (167)
T ss_pred             eCCCCcCHHHHHHHHhc
Confidence            99999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.1e-23  Score=192.37  Aligned_cols=216  Identities=17%  Similarity=0.157  Sum_probs=155.8

Q ss_pred             hhhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceee----EEEEEcCCCCcHHHhH
Q 023335           42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV  117 (283)
Q Consensus        42 ~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~----KI~vlG~~~vGKSSLi  117 (283)
                      --+++++|.||+||.++.++.++...     +|..+..|.++         +...-..++    .|.|+|.||||||||+
T Consensus       111 ~~~~~~~a~GG~gG~gn~~f~~~~~~-----~p~~~~~g~~g---------~~~~~~lelk~iadValVG~PNaGKSTLl  176 (390)
T PRK12298        111 HGQRLLVAKGGWHGLGNTRFKSSVNR-----APRQKTPGTPG---------EERELKLELKLLADVGLLGLPNAGKSTFI  176 (390)
T ss_pred             CCcEEEEecCCCCccchhhhccCccC-----CCcccCCCCCC---------ceEEEEEeeeccccEEEEcCCCCCHHHHH
Confidence            46889999999999999887777664     46777777665         222222333    4779999999999999


Q ss_pred             -hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc----cchh---hhcccCcEEEEEEECC---Chhh
Q 023335          118 -KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVP---IACKDAVAILFMFDLT---SRCT  185 (283)
Q Consensus       118 -~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~~---~~~~~ad~iilv~D~~---~~~s  185 (283)
                       ++++.+.. ..+|.++.......+.+++ ...+.++||||..+-.    .+..   ..+.++|++++|+|++   +.++
T Consensus       177 n~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~  255 (390)
T PRK12298        177 RAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDP  255 (390)
T ss_pred             HHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccCh
Confidence             99887755 6677444444444555543 2347889999975421    1222   2468999999999998   5677


Q ss_pred             HHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHH
Q 023335          186 LNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIM  260 (283)
Q Consensus       186 ~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~  260 (283)
                      ++++..|++++..+..   ..|.|||+||+|+   ..   .....+.++++.+..+  .+++.+||+++.|++++++.|.
T Consensus       256 ~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl---~~---~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~  329 (390)
T PRK12298        256 VENARIIINELEKYSPKLAEKPRWLVFNKIDL---LD---EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLM  329 (390)
T ss_pred             HHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc---CC---hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHH
Confidence            8888899999888753   5677899999996   21   1223445555655544  3689999999999999999999


Q ss_pred             HHHhCCccccccccCCCC
Q 023335          261 AKLFNLPWTVKRNLTIGE  278 (283)
Q Consensus       261 ~~i~~~~~~~~~~~~~~~  278 (283)
                      +.+.+.++..+.....++
T Consensus       330 ~~L~~~~~~~~~~~~td~  347 (390)
T PRK12298        330 TFIEENPREEAEEAEAPE  347 (390)
T ss_pred             HHhhhCcccCCcccccCc
Confidence            999888876655554443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1e-23  Score=195.89  Aligned_cols=204  Identities=14%  Similarity=0.103  Sum_probs=148.2

Q ss_pred             hhhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCcee----eEEEEEcCCCCcHHHhH
Q 023335           42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVS----LKISLLGDCQIGKTSFV  117 (283)
Q Consensus        42 ~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~----~KI~vlG~~~vGKSSLi  117 (283)
                      -.+++++|.||+||.+|.++.++...     +|..+..|.++         +...-..+    .+|+|||.||||||||+
T Consensus       111 ~g~~~~~a~GG~GG~Gn~~f~~~~~~-----~p~~~~~G~~G---------e~~~~~leLk~~adV~LVG~PNAGKSTLl  176 (500)
T PRK12296        111 AGTRFVAAAGGRGGLGNAALASKARK-----APGFALLGEPG---------EERDLVLELKSVADVGLVGFPSAGKSSLI  176 (500)
T ss_pred             CCCEEEEEccCCCcCCCcccCCccCC-----CCccccCCCCC---------ceEEEEEEecccceEEEEEcCCCCHHHHH
Confidence            36889999999999999888777765     47888888777         22222233    45889999999999999


Q ss_pred             -hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhh---hcccCcEEEEEEECCC----hh
Q 023335          118 -KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPI---ACKDAVAILFMFDLTS----RC  184 (283)
Q Consensus       118 -~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~---~~~~ad~iilv~D~~~----~~  184 (283)
                       ++++.+.. ..++.+........+.+++  ..+.+||+||...    ...+...   ++.++|++|+|+|+++    ++
T Consensus       177 n~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rd  254 (500)
T PRK12296        177 SALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRD  254 (500)
T ss_pred             HHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccC
Confidence             99987766 6777555555555666655  4688999999642    2222222   3568999999999985    35


Q ss_pred             hHHHHHHHHHHHHhHCC------------CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          185 TLNSIVGWYSEARKWNQ------------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       185 s~~~~~~~~~~i~~~~~------------~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      .++++..|..++..+.+            ..|.|||+||+|+    ++.  ....+.........++++|++||++++|+
T Consensus       255 p~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL----~da--~el~e~l~~~l~~~g~~Vf~ISA~tgeGL  328 (500)
T PRK12296        255 PLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV----PDA--RELAEFVRPELEARGWPVFEVSAASREGL  328 (500)
T ss_pred             chhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc----hhh--HHHHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            67777777777776642            4667899999996    221  11223333344456789999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023335          253 NKIFKFIMAKLFNLP  267 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~  267 (283)
                      ++++++|.+.+.+.+
T Consensus       329 dEL~~~L~ell~~~r  343 (500)
T PRK12296        329 RELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998886644

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.91  E-value=5.9e-24  Score=175.82  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=117.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|.+|||||||+ ++.++.+....+|.+...  ..+.++  .+.+.+||++|++.+..++..++.++|++|+|
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            3589999999999999999 999887765555655443  334444  36788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH------------cCCcEEE
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------------MKATLFF  243 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~e  243 (283)
                      +|+++++++.....|+.++.+.  ..+.|.++|+||+|+...       ...+++.+....            ....+++
T Consensus        92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-------~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~  164 (184)
T smart00178       92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA-------ASEDELRYALGLTNTTGSKGKVGVRPLEVFM  164 (184)
T ss_pred             EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-------CCHHHHHHHcCCCcccccccccCCceeEEEE
Confidence            9999999999998888877643  235566899999996221       122333322210            1234788


Q ss_pred             EcCCCCcCHHHHHHHHHHH
Q 023335          244 SSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~  262 (283)
                      +||++|+|++++++||.+.
T Consensus       165 ~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      165 CSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eecccCCChHHHHHHHHhh
Confidence            9999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.91  E-value=2.5e-23  Score=168.83  Aligned_cols=154  Identities=15%  Similarity=0.173  Sum_probs=107.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchh---------hhccc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP---------IACKD  170 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------~~~~~  170 (283)
                      +|+++|.+|||||||+ ++.++.+. ..++.+..+.....+..  ..+.+.+|||+|.........         .....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999 99998875 33332222222222222  347799999999843111000         01123


Q ss_pred             CcEEEEEEECCChhhH--HHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          171 AVAILFMFDLTSRCTL--NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       171 ad~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      +|++|+|+|+++..++  +....|++.+.....+.|+|+|+||+|+.   .   ..... +..++++..+.+++++||++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~---~---~~~~~-~~~~~~~~~~~~~~~~Sa~~  152 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL---T---FEDLS-EIEEEEELEGEEVLKISTLT  152 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC---c---hhhHH-HHHHhhhhccCceEEEEecc
Confidence            6899999999987654  66678888887765567778999999962   1   11112 25556666678899999999


Q ss_pred             CcCHHHHHHHHHHHHh
Q 023335          249 NINVNKIFKFIMAKLF  264 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~  264 (283)
                      |.|++++|+++.+.++
T Consensus       153 ~~gi~~l~~~l~~~~~  168 (168)
T cd01897         153 EEGVDEVKNKACELLL  168 (168)
T ss_pred             cCCHHHHHHHHHHHhC
Confidence            9999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.91  E-value=2e-23  Score=171.39  Aligned_cols=155  Identities=19%  Similarity=0.258  Sum_probs=122.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ...+||+++|..|+|||||+ ++..+.+....||.|.+..  .+.+++  +.+.+||.+|+..++.+|+.|+.++|++|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence            45899999999999999999 9988877777888887754  455555  568899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCC
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATH  248 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~  248 (283)
                      |+|.++.+.+.+....+.++...  ..+.|.+|++||+|+.    ..   ...+++.....      ...+.++.+||.+
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~----~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~  160 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP----DA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKT  160 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST----TS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEecccccc----Cc---chhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence            99999999999988877777654  2345557899999962    21   12333333222      2344578899999


Q ss_pred             CcCHHHHHHHHHHHH
Q 023335          249 NINVNKIFKFIMAKL  263 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i  263 (283)
                      |+|+.+.|+||.+.+
T Consensus       161 g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  161 GEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcC
Confidence            999999999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01890 LepA LepA subfamily

Probab=99.91  E-value=2.1e-23  Score=171.16  Aligned_cols=152  Identities=14%  Similarity=0.223  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc-------cc-cccc------cceeeeeEEEEEE-----CCeEEEEEEEeCCCCCCcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE-------QE-RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~-------~~-~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~~  161 (283)
                      +|+++|+++||||||+ ++++..       +. ...+      +.|.++....+.+     ++..+.+++|||+|+++|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            6899999999999999 998742       22 1111      2244554444333     6678899999999999999


Q ss_pred             cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-
Q 023335          162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-  240 (283)
Q Consensus       162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-  240 (283)
                      .....+++++|++|+|||+++..+++....|.....   .+.|.++|+||+|+.    ..   ...+...++++.+++. 
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~----~~---~~~~~~~~~~~~~~~~~  151 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLP----SA---DPERVKQQIEDVLGLDP  151 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCC----cC---CHHHHHHHHHHHhCCCc
Confidence            999999999999999999999877777766654332   245668999999962    11   1123345566666663 


Q ss_pred             --EEEEcCCCCcCHHHHHHHHHHHH
Q 023335          241 --LFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       241 --~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                        ++++||++|.|++++|+++.+.+
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhC
Confidence              89999999999999999998875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.91  E-value=3.1e-23  Score=168.50  Aligned_cols=154  Identities=14%  Similarity=0.133  Sum_probs=110.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCC----Ccccchhhhcc---cCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACK---DAV  172 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~---~ad  172 (283)
                      .|+++|.+|||||||+ ++.+.... ...+.+..+.....+.+++. ..+.+|||||..    .+..+...+++   .+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999 99876543 33332222222233344432 468999999964    22334444444   599


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCC
Q 023335          173 AILFMFDLTSR-CTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSAT  247 (283)
Q Consensus       173 ~iilv~D~~~~-~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~  247 (283)
                      ++++|+|+++. ++++.+..|.+++....+   ..|+++|+||+|+.   +   .....+....+... .+.+++++||+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~~Sa~  154 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL---D---EEELFELLKELLKELWGKPVFPISAL  154 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC---C---chhhHHHHHHHHhhCCCCCEEEEecC
Confidence            99999999999 899999999999987743   45668999999962   2   12233445555555 37789999999


Q ss_pred             CCcCHHHHHHHHHHH
Q 023335          248 HNINVNKIFKFIMAK  262 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~  262 (283)
                      ++.|++++|+++.+.
T Consensus       155 ~~~gi~~l~~~i~~~  169 (170)
T cd01898         155 TGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.91  E-value=1.4e-23  Score=167.67  Aligned_cols=150  Identities=18%  Similarity=0.331  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      .|+++|++|||||||+ ++.+.++. .+.+|.+.++.  .+..++  +.+.+||++|++.+..++..+++++|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3789999999999999 99999888 66678877764  333433  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCHH
Q 023335          180 LTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      +++.+++.....|+..+...  ..+.|.++|+||+|+.    ...  ...+....+    ....+++++++||++|.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  150 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP----GAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNID  150 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc----CCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence            99999998888777776543  2345668999999962    111  111111111    11234678999999999999


Q ss_pred             HHHHHHHH
Q 023335          254 KIFKFIMA  261 (283)
Q Consensus       254 ~lf~~l~~  261 (283)
                      ++|++|.+
T Consensus       151 ~l~~~l~~  158 (159)
T cd04159         151 IVLDWLIK  158 (159)
T ss_pred             HHHHHHhh
Confidence            99999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.91  E-value=4.7e-23  Score=174.61  Aligned_cols=168  Identities=26%  Similarity=0.326  Sum_probs=130.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ ++.++.+.. +.+|.+..+........+..+.+.+|||+|+++|+.++..|+.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            499999999999999999 999999994 555777777777766666688999999999999999999999999999999


Q ss_pred             EECCC-hhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCc-------ccchHHHHHHHHHH---cCCcEEEEc
Q 023335          178 FDLTS-RCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDL-------QWTIATQARAYAKA---MKATLFFSS  245 (283)
Q Consensus       178 ~D~~~-~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~-------~~~~~~~~~~~~~~---~~~~~~e~S  245 (283)
                      ||.++ ..+++....|.+++....+ ..++++|+||+||........       ...........+..   ....++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 4556666799999998885 466689999999743211000       11112222222222   233489999


Q ss_pred             CC--CCcCHHHHHHHHHHHHhCCc
Q 023335          246 AT--HNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       246 a~--~~~~v~~lf~~l~~~i~~~~  267 (283)
                      ++  ++.+|+++|..++..+.+..
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhh
Confidence            99  99999999999999997654

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.91  E-value=3.9e-23  Score=161.08  Aligned_cols=164  Identities=20%  Similarity=0.202  Sum_probs=131.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .++++|+++|..|+||||++ +|.+.......||.|.+..  ++.++  .+++++||.+||..++..|+.||..+|++|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik--tl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK--TLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE--EEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            34899999999999999999 9998876677778887654  55554  4779999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |+|.+|+..+++....++++..-  ....+++|++||.|+...+.... ....-++.++++...++.+.|||.+|+++.+
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~-i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEE-ISKALDLEELAKSHHWRLVKCSAVTGEDLLE  168 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHH-HHHhhCHHHhccccCceEEEEeccccccHHH
Confidence            99999999888877666655432  22467889999999743332211 0113446677788899999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      -++|+...+..+
T Consensus       169 gidWL~~~l~~r  180 (185)
T KOG0073|consen  169 GIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988763

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.90  E-value=9.4e-24  Score=166.94  Aligned_cols=133  Identities=17%  Similarity=0.141  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCC-----CcccchhhhcccCcEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-----RSFDHVPIACKDAVAIL  175 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~~~~~~~~~~ad~ii  175 (283)
                      ||+++|++|||||||+ ++.++.+. +.+|.+.++.       +     .+|||+|+.     .+..+.. .++++|++|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999 99987653 2334443331       1     579999973     2333333 478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++.++.. ..|.+.+     ..|.++|+||+||.   +   .....+++.++++..+. +++++||++|.|+++
T Consensus        68 lv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  135 (142)
T TIGR02528        68 LVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLA---E---ADVDIERAKELLETAGAEPIFEISSVDEQGLEA  135 (142)
T ss_pred             EEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccC---C---cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence            9999999998865 3454432     23668899999972   1   12235667778887776 799999999999999


Q ss_pred             HHHHHH
Q 023335          255 IFKFIM  260 (283)
Q Consensus       255 lf~~l~  260 (283)
                      +|+++.
T Consensus       136 l~~~l~  141 (142)
T TIGR02528       136 LVDYLN  141 (142)
T ss_pred             HHHHHh
Confidence            999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.90  E-value=2.5e-22  Score=159.65  Aligned_cols=154  Identities=20%  Similarity=0.257  Sum_probs=124.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|.+|+|||||+ ++.++.+. ++.++++.++....+..++..+.+.+||++|+..+..++..+++++++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            379999999999999999 99998866 6667888888777788888778899999999999999999999999999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          178 FDLTSR-CTLNSIV-GWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       178 ~D~~~~-~s~~~~~-~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|+... .++.... .|...+..... +.|.++++||+|+.   ..   .........+......+++++||++|.|+++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~---~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~  154 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLR---DA---KLKTHVAFLFAKLNGEPIIPLSAETGKNIDS  154 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCC---cc---hhhHHHHHHHhhccCCceEEeecCCCCCHHH
Confidence            999887 7777765 78887777655 55668999999962   11   1223333334444456899999999999999


Q ss_pred             HHHHH
Q 023335          255 IFKFI  259 (283)
Q Consensus       255 lf~~l  259 (283)
                      +|++|
T Consensus       155 ~~~~l  159 (161)
T TIGR00231       155 AFKIV  159 (161)
T ss_pred             HHHHh
Confidence            99986

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.90  E-value=8.6e-23  Score=166.59  Aligned_cols=149  Identities=16%  Similarity=0.221  Sum_probs=114.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ ++.+..+....+|.|.++.  .+..++  ..+.+||++|+..+...+..+++++|++++|
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v   88 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV   88 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            3789999999999999999 9988777666667775543  444554  5688999999998888888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC--------cEEEEcCC
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--------TLFFSSAT  247 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~e~Sa~  247 (283)
                      ||+++..++.....|+..+.+..  .+.|.++++||+|+.   . .  ..    ..++.+.+++        .++++||+
T Consensus        89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~-~--~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04155          89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA---T-A--AP----AEEIAEALNLHDLRDRTWHIQACSAK  158 (173)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc---c-C--CC----HHHHHHHcCCcccCCCeEEEEEeECC
Confidence            99999999988887776665432  245667999999962   1 1  11    1222333332        36789999


Q ss_pred             CCcCHHHHHHHHHH
Q 023335          248 HNINVNKIFKFIMA  261 (283)
Q Consensus       248 ~~~~v~~lf~~l~~  261 (283)
                      +|+|++++|++|.+
T Consensus       159 ~~~gi~~~~~~l~~  172 (173)
T cd04155         159 TGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.90  E-value=1.2e-22  Score=163.83  Aligned_cols=151  Identities=15%  Similarity=0.133  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc---cc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE---QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~---~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .|+++|++|||||||+ ++++..   +. +..++++.+.....+.+++ ...+.+|||+|+++|......+++++|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            5899999999999999 998642   33 2223334444334455542 3578999999999887666678899999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH---cCCcEEEEcCCCCc
Q 023335          177 MFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA---MKATLFFSSATHNI  250 (283)
Q Consensus       177 v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~  250 (283)
                      |||+++   .++++.+.    .+... ...|+++|+||+|+.   .........++..+..+.   .+.+++++||++|.
T Consensus        81 V~d~~~~~~~~~~~~~~----~~~~~-~~~~~ilv~NK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171          81 VVAADEGIMPQTREHLE----ILELL-GIKRGLVVLTKADLV---DEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EEECCCCccHhHHHHHH----HHHHh-CCCcEEEEEECcccc---CHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            999987   34443322    22222 223668999999962   111111223444455444   46789999999999


Q ss_pred             CHHHHHHHHHH
Q 023335          251 NVNKIFKFIMA  261 (283)
Q Consensus       251 ~v~~lf~~l~~  261 (283)
                      |++++|+.+.+
T Consensus       153 ~v~~l~~~l~~  163 (164)
T cd04171         153 GIEELKEYLDE  163 (164)
T ss_pred             CHHHHHHHHhh
Confidence            99999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9.2e-23  Score=162.89  Aligned_cols=163  Identities=16%  Similarity=0.179  Sum_probs=127.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+.+|+++|..++||||++ ++..+++....||.|.+...  +.+.  ++.+.+||.+||++++.+|+.|+++.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            3456899999999999999999 99999999779999987654  3443  68899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHH--HHcCCcEEEEcCCCCc
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYA--KAMKATLFFSSATHNI  250 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~e~Sa~~~~  250 (283)
                      |||+|.+|++-+.+.++-+..+.....  ..|.++.+||.|+.+.++..+    ..+...+.  +.....+..++|.+|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~e----i~~~L~l~~l~~~~w~iq~~~a~~G~  164 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAE----ITNKLGLHSLRSRNWHIQSTCAISGE  164 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHH----HHhHhhhhccCCCCcEEeeccccccc
Confidence            999999999999998877777666543  445568899999754444210    11111111  1122334559999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 023335          251 NVNKIFKFIMAKLFNL  266 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~  266 (283)
                      |+.|.++++.+.+.+.
T Consensus       165 GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  165 GLYEGLDWLSNNLKKR  180 (181)
T ss_pred             cHHHHHHHHHHHHhcc
Confidence            9999999999987653

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-22  Score=162.07  Aligned_cols=164  Identities=23%  Similarity=0.342  Sum_probs=142.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+|++++|+.|.|||+++ +.+.++|+ .+.+|+|++...-...-+...+++..|||+|+|.+..+..-||-++.+.|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            35799999999999999999 99999999 66679999887666655555799999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      ++||++.+-++.++..|...+.+.+.+.|++++|||.|.    .   .+.+....-.+-+..++.||++||+++.|.+.-
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi----~---~r~~k~k~v~~~rkknl~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDI----K---ARKVKAKPVSFHRKKNLQYYEISAKSNYNFERP  160 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceec----c---ccccccccceeeecccceeEEeecccccccccc
Confidence            999999999999999999999999988788899999994    1   112334445566677899999999999999999


Q ss_pred             HHHHHHHHhCCcc
Q 023335          256 FKFIMAKLFNLPW  268 (283)
Q Consensus       256 f~~l~~~i~~~~~  268 (283)
                      |.++.+.+...+.
T Consensus       161 Fl~LarKl~G~p~  173 (216)
T KOG0096|consen  161 FLWLARKLTGDPS  173 (216)
T ss_pred             hHHHhhhhcCCCC
Confidence            9999999988773

>PRK15494 era GTPase Era; Provisional

Probab=99.88  E-value=2.1e-21  Score=174.97  Aligned_cols=168  Identities=16%  Similarity=0.277  Sum_probs=122.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC-cccchh-------h
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVP-------I  166 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~-------~  166 (283)
                      .+.+||+++|.+|||||||+ ++++..+.  ...+.+..+.....+..++.  .+.+|||||... +..+..       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            45789999999999999999 99998876  23332233444455666654  578999999854 333222       2


Q ss_pred             hcccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEE
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFF  243 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e  243 (283)
                      ++.++|++++|+|.++  +|.... .|++.++..  +.|+|+|+||+|+.    ..    ...++.+++...+  ..+|+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~----~~----~~~~~~~~l~~~~~~~~i~~  195 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIE----SK----YLNDIKAFLTENHPDSLLFP  195 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCc----cc----cHHHHHHHHHhcCCCcEEEE
Confidence            4679999999999754  455553 466666543  45778999999962    11    1344555555544  57899


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335          244 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP  279 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  279 (283)
                      +||++|.|++++|++|.+.+.+.+|.......++.|
T Consensus       196 iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~  231 (339)
T PRK15494        196 ISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLP  231 (339)
T ss_pred             EeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999888777665

>cd01878 HflX HflX subfamily

Probab=99.87  E-value=1e-21  Score=164.83  Aligned_cols=153  Identities=18%  Similarity=0.164  Sum_probs=109.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--chh------hhcc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--HVP------IACK  169 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~------~~~~  169 (283)
                      .++|+|+|++|||||||+ ++++..+. ...+..+.+.....+.+++. ..+.+|||+|......  +..      ..+.
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~  119 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEVA  119 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence            479999999999999999 99988754 33333333334445555543 3688999999743111  111      1357


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      ++|++++|+|++++.++..+..|.+.+..... +.|+++|+||+|+   .+..   .    ....+...+.+++++||++
T Consensus       120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl---~~~~---~----~~~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDL---LDDE---E----LEERLEAGRPDAVFISAKT  189 (204)
T ss_pred             cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcccc---CChH---H----HHHHhhcCCCceEEEEcCC
Confidence            89999999999999999888888887776543 4566899999996   2211   1    1134455677899999999


Q ss_pred             CcCHHHHHHHHHHHH
Q 023335          249 NINVNKIFKFIMAKL  263 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i  263 (283)
                      +.|++++|++|.+.+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.87  E-value=3.9e-21  Score=154.08  Aligned_cols=146  Identities=13%  Similarity=0.076  Sum_probs=109.9

Q ss_pred             EEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc------hhhhcc--cCcEE
Q 023335          105 LLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIACK--DAVAI  174 (283)
Q Consensus       105 vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~~--~ad~i  174 (283)
                      ++|.+|||||||+ ++.+..+. ..+++++.+.....+.+++  ..+.+|||||++.+...      ...++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999 99888755 6667666676667777776  46889999999876643      455664  99999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ++|+|.++.++.   ..|..++...  +.|.++|+||+|+.   . .  .........+++.++++++++||.+|.|+++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~---~-~--~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~  147 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEA---E-K--RGIKIDLDKLSELLGVPVVPTSARKGEGIDE  147 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhc---c-c--ccchhhHHHHHHhhCCCeEEEEccCCCCHHH
Confidence            999999886543   2444444432  45678999999962   1 1  1223334577777889999999999999999


Q ss_pred             HHHHHHHHH
Q 023335          255 IFKFIMAKL  263 (283)
Q Consensus       255 lf~~l~~~i  263 (283)
                      +|+++.+.+
T Consensus       148 l~~~l~~~~  156 (158)
T cd01879         148 LKDAIAELA  156 (158)
T ss_pred             HHHHHHHHh
Confidence            999998763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.87  E-value=1.3e-21  Score=149.90  Aligned_cols=112  Identities=29%  Similarity=0.541  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc---cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ||+|+|++|||||||+ ++++..+.   ...++.+.++......+......+++||++|++.+...+..++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999 99998876   2233445555555667777777799999999999888888889999999999


Q ss_pred             EECCChhhHHHHH---HHHHHHHhHCCCCceEEEeecCC
Q 023335          178 FDLTSRCTLNSIV---GWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       178 ~D~~~~~s~~~~~---~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      ||+++++||+.+.   .|+..+.....+.|.||||||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            9999999999874   56777777777766689999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00436 era GTP-binding protein Era

Probab=99.87  E-value=6.5e-21  Score=166.96  Aligned_cols=165  Identities=16%  Similarity=0.114  Sum_probs=117.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-cc-------hhhhcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DH-------VPIACK  169 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~-------~~~~~~  169 (283)
                      +|+++|.+|||||||+ ++++.++.  ...+ |+.. ........++  ..+.+|||||..... .+       ...+++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            6899999999999999 99998765  4444 4432 2222222233  458899999976432 11       234678


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATH  248 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~  248 (283)
                      ++|++++|+|+++..+.+  ..+++.+..  .+.|.++|+||+|+   ..   .....+....++...+. +++++||++
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl---~~---~~~~~~~~~~~~~~~~~~~v~~iSA~~  148 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDN---KF---KDKLLPLIDKYAILEDFKDIVPISALT  148 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeC---CC---HHHHHHHHHHHHhhcCCCceEEEecCC
Confidence            999999999999877764  344554443  24566899999996   21   22234455556555555 789999999


Q ss_pred             CcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335          249 NINVNKIFKFIMAKLFNLPWTVKRNLTIGEP  279 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  279 (283)
                      |.|++++++++.+.+...+|........+.|
T Consensus       149 g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~  179 (270)
T TIGR00436       149 GDNTSFLAAFIEVHLPEGPFRYPEDYVTDQP  179 (270)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCcccCCCC
Confidence            9999999999999999999887777665544

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=5.5e-21  Score=179.69  Aligned_cols=254  Identities=15%  Similarity=0.115  Sum_probs=153.1

Q ss_pred             hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCccc-ccccccCCCCCCCCCCcccccccc
Q 023335            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR-YQKLTRRSSSESSPAPDTMEAGLV   82 (283)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~~-~~~~~~~~~~~~~p~p~~~~~g~~   82 (283)
                      +..++..++.+++..++.+|.+.+.......+.+.++..--+++++-...-.... .............|-+..+..|..
T Consensus       107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~g  186 (472)
T PRK03003        107 VAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRG  186 (472)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCC
Confidence            4455666778888889999999887666655666666544455554441110000 000000000000111111122211


Q ss_pred             --cc----ccccCC-CCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEE
Q 023335           83 --EL----SRTFSS-GYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIW  152 (283)
Q Consensus        83 --~~----~~~~~~-~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~  152 (283)
                        ..    ...... ..........+||+++|.+|||||||+ ++++..+.  ...++++.+.....+.+++..  +.+|
T Consensus       187 i~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~  264 (472)
T PRK03003        187 VGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFV  264 (472)
T ss_pred             cHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEE
Confidence              00    000000 001111123589999999999999999 99998764  666777777777777788765  4689


Q ss_pred             eCCCCCC----------cccch-hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335          153 DVGGDSR----------SFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  221 (283)
Q Consensus       153 Dt~G~~~----------~~~~~-~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~  221 (283)
                      ||+|..+          |..+. ..+++++|++|+|||+++..+++++. ++..+..  .+.|.|||+||+||.   ...
T Consensus       265 DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~---~~~  338 (472)
T PRK03003        265 DTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLV---DED  338 (472)
T ss_pred             ECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccC---Chh
Confidence            9999632          22222 23578999999999999998888764 4454443  355678999999972   222


Q ss_pred             cccchHHHHHH-HHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          222 LQWTIATQARA-YAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       222 ~~~~~~~~~~~-~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ......+++.+ +.....++++++||++|.||+++|+.+.+.+.+
T Consensus       339 ~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        339 RRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             HHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            11222223322 222334789999999999999999999987743

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.86  E-value=2.5e-21  Score=161.35  Aligned_cols=147  Identities=14%  Similarity=0.136  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc--Ccccccc-------------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG--NEQERSL-------------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV  164 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~--~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~  164 (283)
                      .+|+++|.++||||||+ ++++  +.+...+             .+.|.++..+...++...+.+++|||+|+++|....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            48999999999999999 9987  5554221             234555555555666667889999999999999999


Q ss_pred             hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-------Hc
Q 023335          165 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AM  237 (283)
Q Consensus       165 ~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-------~~  237 (283)
                      ..+++++|++++|||+++.. +.....|+..+..  .+.|+++|+||+|+.    ........+++.++..       ..
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~  155 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRP----DARPEEVVDEVFDLFIELGATEEQL  155 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCC----CCCHHHHHHHHHHHHHHhCCccccC
Confidence            99999999999999998742 3333445554433  245678999999962    2222223455555543       23


Q ss_pred             CCcEEEEcCCCCcCHHH
Q 023335          238 KATLFFSSATHNINVNK  254 (283)
Q Consensus       238 ~~~~~e~Sa~~~~~v~~  254 (283)
                      +++++++||++|.|+.+
T Consensus       156 ~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         156 DFPVLYASAKNGWASLN  172 (194)
T ss_pred             ccCEEEeehhccccccc
Confidence            67899999999987643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.86  E-value=1.2e-20  Score=152.79  Aligned_cols=156  Identities=10%  Similarity=0.027  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      .|+++|.+|||||||+ ++..+.+.. ..++...+.....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            4899999999999999 999888773 22333333322333333 23567899999999998888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCCCcCH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATHNINV  252 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v  252 (283)
                      |+++....+.. ..+..+..  .+.|+++|+||+|+.    ........+....+..      ...++++++||++|+|+
T Consensus        82 d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKP----NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI  154 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecc----cccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence            99885322221 11222322  345678999999962    1111111222222211      12367999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023335          253 NKIFKFIMAKLF  264 (283)
Q Consensus       253 ~~lf~~l~~~i~  264 (283)
                      +++|++|.+...
T Consensus       155 ~~l~~~l~~~~~  166 (168)
T cd01887         155 DDLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.85  E-value=2.5e-20  Score=143.72  Aligned_cols=163  Identities=15%  Similarity=0.182  Sum_probs=131.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCc-ccchhhhcccCcEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRS-FDHVPIACKDAVAI  174 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-~~~~~~~~~~ad~i  174 (283)
                      ..||+++|..+||||+++ +++.+...  ..+..+..|.+...+.- .|..-.+.++||+|...+ ..+-++|+.-+|++
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf   88 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF   88 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence            579999999999999999 88776655  33334445555555544 455667999999998887 66778899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      +||||..|++||+.+..+..+|.+...  ..|+++.|||+|+     .+..++..+.++.||+.-.+..++++|.+...+
T Consensus        89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr-----~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL  163 (198)
T KOG3883|consen   89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDR-----AEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL  163 (198)
T ss_pred             EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhc-----ccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence            999999999999998877777776643  3455688999996     233455688899999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023335          253 NKIFKFIMAKLFNLP  267 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~  267 (283)
                      -+.|..+...+....
T Consensus       164 ~epf~~l~~rl~~pq  178 (198)
T KOG3883|consen  164 YEPFTYLASRLHQPQ  178 (198)
T ss_pred             hhHHHHHHHhccCCc
Confidence            999999999987654

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.85  E-value=3.3e-20  Score=145.73  Aligned_cols=152  Identities=25%  Similarity=0.415  Sum_probs=116.7

Q ss_pred             EEcCCCCcHHHhH-hhhcCcc-ccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCC
Q 023335          105 LLGDCQIGKTSFV-KYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS  182 (283)
Q Consensus       105 vlG~~~vGKSSLi-~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~  182 (283)
                      ++|.+|+|||||+ ++.+... .....++..++........+....+.+||++|+..+......+++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            5899999999999 9998887 4333433477777777777778899999999999888777888999999999999999


Q ss_pred             hhhHHHHHHHH--HHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023335          183 RCTLNSIVGWY--SEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM  260 (283)
Q Consensus       183 ~~s~~~~~~~~--~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~  260 (283)
                      ..+++....|.  ..........|.++|+||+|+.   ... ...............+.+++++|+.++.|+++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~---~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLP---EER-VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc---ccc-chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            99999988773  2223334456668999999962   111 11111114445556678999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=5.9e-20  Score=171.08  Aligned_cols=252  Identities=16%  Similarity=0.152  Sum_probs=150.6

Q ss_pred             hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCC--CCccc--ccccccCCCCCCCCCCccccc
Q 023335            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGK--QPAVR--YQKLTRRSSSESSPAPDTMEA   79 (283)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~--~~~~~--~~~~~~~~~~~~~p~p~~~~~   79 (283)
                      +..++..++.++...++.+|.+.++.....-+.+.+++...+++++-...  .....  +........   .+-+..+..
T Consensus        68 ~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~---~~~~vSa~~  144 (429)
T TIGR03594        68 IREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFG---EPIPISAEH  144 (429)
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCC---CeEEEeCCc
Confidence            44566677788888899999998888777667777777666666654311  11000  000000000   000111111


Q ss_pred             cc--ccc----ccccC-CCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEE
Q 023335           80 GL--VEL----SRTFS-SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAF  149 (283)
Q Consensus        80 g~--~~~----~~~~~-~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l  149 (283)
                      |.  ...    ..... ...........+||+++|.+|||||||+ ++++....  ...+.+..+.....+..++.  .+
T Consensus       145 g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~  222 (429)
T TIGR03594       145 GRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KY  222 (429)
T ss_pred             CCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EE
Confidence            10  000    00000 0111112234689999999999999999 99987644  55555555555555666665  57


Q ss_pred             EEEeCCCCCCcccch-----------hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335          150 SIWDVGGDSRSFDHV-----------PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL  218 (283)
Q Consensus       150 ~i~Dt~G~~~~~~~~-----------~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l  218 (283)
                      .+|||+|..++....           ..+++.+|++|+|+|+++..+.++.. ++..+..  ...|.|+|+||+||..  
T Consensus       223 ~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~--  297 (429)
T TIGR03594       223 LLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVK--  297 (429)
T ss_pred             EEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCC--
Confidence            889999986654322           23678999999999999887776653 3444433  2456789999999720  


Q ss_pred             CCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          219 PPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      .........+++...... .+++++++||++|.|++++|+++.+.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       298 DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            111111112222221111 24789999999999999999999886643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK04213 GTP-binding protein; Provisional

Probab=99.85  E-value=6.7e-21  Score=159.51  Aligned_cols=149  Identities=16%  Similarity=0.198  Sum_probs=99.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCC-----------CCCcccchh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVP  165 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~  165 (283)
                      ..+||+++|.+|||||||+ ++.+..+. ...++++  +....+.+.    .+.+|||+|           ++.++.++.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            3579999999999999999 99988766 4444333  333333333    488999999           455655555


Q ss_pred             hhcc----cCcEEEEEEECCChhhHHHHHHH------------HHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHH
Q 023335          166 IACK----DAVAILFMFDLTSRCTLNSIVGW------------YSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ  229 (283)
Q Consensus       166 ~~~~----~ad~iilv~D~~~~~s~~~~~~~------------~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~  229 (283)
                      .++.    .++++++|+|.++...+.  ..|            +..+..  .+.|+++|+||+|+.    ...    .+.
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~----~~~----~~~  149 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKI----KNR----DEV  149 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH--cCCCeEEEEECcccc----CcH----HHH
Confidence            6654    346777888765432210  122            222222  356778999999962    111    334


Q ss_pred             HHHHHHHcCC---------cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          230 ARAYAKAMKA---------TLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       230 ~~~~~~~~~~---------~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ..++++.+++         +++++||++| |++++|++|.+.+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            5566666665         4789999999 9999999999887543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.85  E-value=4.5e-21  Score=146.89  Aligned_cols=159  Identities=19%  Similarity=0.296  Sum_probs=120.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .++.+.++|..++|||||+ ....+.+. .-.||.|.+..    .+....+.+.+||.+||.+|+.+|..|++.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            3678999999999999999 88888887 67788887753    344567889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |+|.++++.++..+.-++.+..... ..+| ++.|||.|+...+...  ..+.+....-.....+..|.+|+++..|++.
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~--~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI--ALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH--HHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            9999999888777665555554432 4455 6889999964433321  1111111111222345688999999999999


Q ss_pred             HHHHHHHHH
Q 023335          255 IFKFIMAKL  263 (283)
Q Consensus       255 lf~~l~~~i  263 (283)
                      +.+||++.-
T Consensus       173 ~~~Wli~hs  181 (186)
T KOG0075|consen  173 TLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHh
Confidence            999999864

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.2e-20  Score=142.07  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=121.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++++|+++|..++||||++ ++.-+......||+|++..  ++.+  +++.+++||.+|+++.+.+|++||....++|||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve--tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCcccccccceeEE--EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            4899999999999999999 9999988888999998765  3333  568899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~  250 (283)
                      .|..+++..++.+.-+..+....  .+.+.+|.+||.|+....+       .+++.++.     +........+||.+|+
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-------pqei~d~leLe~~r~~~W~vqp~~a~~gd  164 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK-------PQEIQDKLELERIRDRNWYVQPSCALSGD  164 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-------HHHHHHHhccccccCCccEeeccccccch
Confidence            99999988888876555554432  2344568899999633222       23333332     2223345569999999


Q ss_pred             CHHHHHHHHHHHHh
Q 023335          251 NVNKIFKFIMAKLF  264 (283)
Q Consensus       251 ~v~~lf~~l~~~i~  264 (283)
                      |+.|-|.|+.+.+-
T Consensus       165 gL~eglswlsnn~~  178 (180)
T KOG0071|consen  165 GLKEGLSWLSNNLK  178 (180)
T ss_pred             hHHHHHHHHHhhcc
Confidence            99999999987653

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.84  E-value=4.4e-20  Score=171.37  Aligned_cols=149  Identities=15%  Similarity=0.234  Sum_probs=117.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcc--ccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~  168 (283)
                      .+||+++|.+|||||||+ ++++...  ...+++++.++....+.+++..  +.+|||+|...+...        ...++
T Consensus       203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            589999999999999999 9998764  3667777778777888887754  689999998765432        23578


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      +++|++++|||++++.+++..  |+..+..  .+.|+|+|+||+|+.    ..       +...+++.++.+++++||++
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~----~~-------~~~~~~~~~~~~~~~vSak~  345 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLK----IN-------SLEFFVSSKVLNSSNLSAKQ  345 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCC----Cc-------chhhhhhhcCCceEEEEEec
Confidence            999999999999999888775  7776643  245668999999962    11       12345667788899999998


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023335          249 NINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~  266 (283)
                       .||+++|+.+.+.+.+.
T Consensus       346 -~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       346 -LKIKALVDLLTQKINAF  362 (442)
T ss_pred             -CCHHHHHHHHHHHHHHH
Confidence             69999999999887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.84  E-value=2.6e-20  Score=168.26  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=109.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC---------cccchhhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~  168 (283)
                      .++|+++|.+|||||||+ ++++..+. ...+.+..++....+.+++. ..+.+|||+|..+         |.... ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            489999999999999999 99988754 55554445666677777432 3688999999732         21111 247


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      .+||++++|||++++.+++.+..|...+..... +.|.++|+||+|+   .+.       .+...+. ....+++++||+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl---~~~-------~~v~~~~-~~~~~~i~iSAk  335 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDL---LDE-------PRIERLE-EGYPEAVFVSAK  335 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecC---CCh-------HhHHHHH-hCCCCEEEEEcc
Confidence            899999999999999988888777766666543 4566899999996   211       1111111 123468999999


Q ss_pred             CCcCHHHHHHHHHHH
Q 023335          248 HNINVNKIFKFIMAK  262 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~  262 (283)
                      +|.|++++++.|.+.
T Consensus       336 tg~GI~eL~~~I~~~  350 (351)
T TIGR03156       336 TGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-22  Score=161.39  Aligned_cols=166  Identities=20%  Similarity=0.324  Sum_probs=139.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE-EEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR-IAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ...+|+.|+|+-++||||++ +++...|. .+..|+|.++..+.+..+... +++++||++||++|..+...||+.+.+.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            34689999999999999999 99999999 566699999988888887654 6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC--CC--Cce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN--QT--AIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATH  248 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~--~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~  248 (283)
                      .+|||+++.-+|+.+..|.+++....  ++  +.| |+.+||||+    ..............+++++|+ ..+|+|+|.
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~----e~~a~~~~~~~~d~f~kengf~gwtets~Ke  178 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ----EKSAKNEATRQFDNFKKENGFEGWTETSAKE  178 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhcc----ChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence            99999999999999999999987652  22  222 688999995    222111224667788888987 589999999


Q ss_pred             CcCHHHHHHHHHHHHhCCc
Q 023335          249 NINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~~  267 (283)
                      +.|++|+-..+++.++-+.
T Consensus       179 nkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  179 NKNIPEAQRELVEKILVND  197 (229)
T ss_pred             ccChhHHHHHHHHHHHhhc
Confidence            9999999999999887655

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.84  E-value=5.3e-20  Score=159.94  Aligned_cols=205  Identities=17%  Similarity=0.170  Sum_probs=152.7

Q ss_pred             hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceeeEEE----EEcCCCCcHHHhH-
Q 023335           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKIS----LLGDCQIGKTSFV-  117 (283)
Q Consensus        43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~KI~----vlG~~~vGKSSLi-  117 (283)
                      -+++++|.||.+|.+|.++.++.+.     +|+.+..|.++         +...-..++|++    +||.||+|||||+ 
T Consensus       112 gq~~~~akGG~GG~GN~~Fks~~nr-----AP~~a~~G~~G---------e~r~v~LELKllADVGLVG~PNaGKSTlls  177 (369)
T COG0536         112 GQRFLVAKGGRGGLGNAHFKSSVNR-----APRFATPGEPG---------EERDLRLELKLLADVGLVGLPNAGKSTLLS  177 (369)
T ss_pred             CcEEEEEcCCCCCccchhhcCcccC-----CcccCCCCCCC---------ceEEEEEEEeeecccccccCCCCcHHHHHH
Confidence            5789999999999999998888776     48888888877         555556678876    9999999999999 


Q ss_pred             hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhc---ccCcEEEEEEECCChh---hH
Q 023335          118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSRC---TL  186 (283)
Q Consensus       118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~ad~iilv~D~~~~~---s~  186 (283)
                      .+...+.. ..||.|.....-..+.++ ..-.+.+-|.||.-+    -..+-..|+   .++.++++|+|++..+   ..
T Consensus       178 ~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~  256 (369)
T COG0536         178 AVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPI  256 (369)
T ss_pred             HHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHH
Confidence            99998888 889966555555566653 234578899998543    344555554   5788999999998654   47


Q ss_pred             HHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE-EcCCCCcCHHHHHHHHHHH
Q 023335          187 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       187 ~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e-~Sa~~~~~v~~lf~~l~~~  262 (283)
                      +++.....++.+|.+   ++|.+||+||+|+    ..+ .+........+.+..+...+. +||.+++|++++...+.+.
T Consensus       257 ~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~----~~~-~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~  331 (369)
T COG0536         257 EDYQTIRNELEKYSPKLAEKPRIVVLNKIDL----PLD-EEELEELKKALAEALGWEVFYLISALTREGLDELLRALAEL  331 (369)
T ss_pred             HHHHHHHHHHHHhhHHhccCceEEEEeccCC----CcC-HHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHH
Confidence            777788888888854   6777999999995    111 112233344444444543322 9999999999999999988


Q ss_pred             HhCCc
Q 023335          263 LFNLP  267 (283)
Q Consensus       263 i~~~~  267 (283)
                      +.+.+
T Consensus       332 l~~~~  336 (369)
T COG0536         332 LEETK  336 (369)
T ss_pred             HHHhh
Confidence            87765

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.84  E-value=1.3e-19  Score=144.67  Aligned_cols=144  Identities=16%  Similarity=0.242  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhcc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK  169 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~  169 (283)
                      +||+++|++|+|||||+ ++.+..+.  ...+++..++....+..++  ..+.+|||+|...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999 99887754  4455555555555555554  46788999998765432        224678


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  249 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  249 (283)
                      ++|++++|+|++++.+..+...|..     ....|+++|+||+|+.   ... ..        .....+.+++++||+++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~---~~~-~~--------~~~~~~~~~~~~Sa~~~  142 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLL---PDS-EL--------LSLLAGKPIIAISAKTG  142 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcC---Ccc-cc--------ccccCCCceEEEECCCC
Confidence            9999999999999888777654433     3456778999999962   211 11        33445678999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023335          250 INVNKIFKFIMAKL  263 (283)
Q Consensus       250 ~~v~~lf~~l~~~i  263 (283)
                      .|+++++++|.+.+
T Consensus       143 ~~v~~l~~~l~~~~  156 (157)
T cd04164         143 EGLDELKEALLELA  156 (157)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.84  E-value=3.9e-20  Score=150.84  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=105.2

Q ss_pred             EEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccch---hhhcccCcEEE
Q 023335          105 LLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHV---PIACKDAVAIL  175 (283)
Q Consensus       105 vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~---~~~~~~ad~ii  175 (283)
                      ++|++|||||||+ ++.+..+. ..++.+..+.....+.+++ ...+.+|||||...    ...+.   ..+++++|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            5899999999999 99888753 3444232333333444551 34578999999632    22332   23467899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHhHC--------CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335          176 FMFDLTSR------CTLNSIVGWYSEARKWN--------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  241 (283)
Q Consensus       176 lv~D~~~~------~s~~~~~~~~~~i~~~~--------~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
                      +|+|+++.      .+++++..|..++....        ...|.++|+||+|+.   ..  ...............+..+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~---~~--~~~~~~~~~~~~~~~~~~~  154 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD---DA--EELEEELVRELALEEGAEV  154 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC---ch--hHHHHHHHHHHhcCCCCCE
Confidence            99999988      57888888888887654        245668999999961   11  1111111233444556789


Q ss_pred             EEEcCCCCcCHHHHHHHHHHH
Q 023335          242 FFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       242 ~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      +++||+++.|++++++++.+.
T Consensus       155 ~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         155 VPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEehhhhcCHHHHHHHHHhh
Confidence            999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=6.2e-20  Score=172.55  Aligned_cols=152  Identities=21%  Similarity=0.267  Sum_probs=107.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC--------cccchhhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~  168 (283)
                      ..+|+|+|.+|||||||+ ++++....  ...++++.+.....+.+++.  .+.+|||+|.+.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999 99988754  44454445555555666664  478899999763        223345678


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      +.+|++|+|||+++..++.. ..|...++.  .+.|+|+|+||+|+.    ..    ..+....+...++ ..+++||++
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~----~~----~~~~~~~~~~g~~-~~~~iSA~~  183 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDE----RG----EADAAALWSLGLG-EPHPVSALH  183 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCC----cc----chhhHHHHhcCCC-CeEEEEcCC
Confidence            99999999999999876543 344444443  356778999999962    11    1112222222223 357899999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023335          249 NINVNKIFKFIMAKLFN  265 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~  265 (283)
                      |.|++++|+++++.+.+
T Consensus       184 g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        184 GRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCcHHHHHHHHhhccc
Confidence            99999999999998865

>cd01889 SelB_euk SelB subfamily

Probab=99.83  E-value=6.4e-20  Score=152.65  Aligned_cols=159  Identities=13%  Similarity=0.071  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC----ccc----cccc--cceeeeeEEEEE----------ECCeEEEEEEEeCCCCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN----EQE----RSLQ--MAGLNLINKTLM----------VQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~----~~~----~~~~--t~~~~~~~~~~~----------~~~~~~~l~i~Dt~G~~~  159 (283)
                      ++|+++|++++|||||+ +++..    .+.    +..+  |.+..+....+.          .++....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999 99872    222    1122  333333333332          123467899999999865


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-H---
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-K---  235 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-~---  235 (283)
                      +..........+|++++|+|+++..+......|.. . ... ..++++|+||+|+   ..........++..+.. +   
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~-~~~-~~~~iiv~NK~Dl---~~~~~~~~~~~~~~~~l~~~~~  154 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-G-EIL-CKKLIVVLNKIDL---IPEEERERKIEKMKKKLQKTLE  154 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-H-HHc-CCCEEEEEECccc---CCHHHHHHHHHHHHHHHHHHHH
Confidence            43322233467899999999988654444333321 1 112 4466899999996   22221212223332221 1   


Q ss_pred             ---HcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          236 ---AMKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       236 ---~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                         ..+++++++||++|+|++++++++...+.-
T Consensus       155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence               135789999999999999999999887753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.83  E-value=9.4e-20  Score=169.91  Aligned_cols=146  Identities=17%  Similarity=0.192  Sum_probs=112.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcc--ccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~  168 (283)
                      .+||+++|.+|||||||+ ++++...  ....+.+..++....+.+++.  .+.+|||+|.+.+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            479999999999999999 9998775  356666667777777777764  5788999998765432        22367


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      +++|++++|||++++.++++...|..     ..+.|.++|+||+|+.   +..   ...       ...+.+++++||++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~---~~~---~~~-------~~~~~~~i~iSAkt  354 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLT---GEI---DLE-------EENGKPVIRISAKT  354 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhcc---ccc---hhh-------hccCCceEEEEeeC
Confidence            89999999999999988876655543     3456778999999972   111   101       33456899999999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023335          249 NINVNKIFKFIMAKLFN  265 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~  265 (283)
                      |.|++++++++.+.+..
T Consensus       355 g~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        355 GEGIDELREAIKELAFG  371 (449)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999998754

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.83  E-value=7.8e-20  Score=147.51  Aligned_cols=139  Identities=13%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch----hhhcccCcEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----PIACKDAVAILF  176 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~ad~iil  176 (283)
                      ||+++|.+|||||||+ ++.+. +.....+.+..       +.+.    .+|||||........    ...++++|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~-~~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGN-YTLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCC-CccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            7999999999999999 86643 33222222222       2222    269999974322111    223689999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC--cEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--TLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~~~~v~~  254 (283)
                      |||+++.+++.  ..|+..+   ....|.++++||+|+    +.    ...+.+.+++++.++  +++++||++|+|+++
T Consensus        71 v~d~~~~~s~~--~~~~~~~---~~~~~ii~v~nK~Dl----~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~  137 (158)
T PRK15467         71 VHGANDPESRL--PAGLLDI---GVSKRQIAVISKTDM----PD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQ  137 (158)
T ss_pred             EEeCCCccccc--CHHHHhc---cCCCCeEEEEEcccc----Cc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHH
Confidence            99999887763  3455543   234566899999996    21    124556677777775  899999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|+.+.+.+.+
T Consensus       138 l~~~l~~~~~~  148 (158)
T PRK15467        138 LVDYLASLTKQ  148 (158)
T ss_pred             HHHHHHHhchh
Confidence            99999877644

>cd01894 EngA1 EngA1 subfamily

Probab=99.82  E-value=2.6e-19  Score=143.00  Aligned_cols=145  Identities=20%  Similarity=0.213  Sum_probs=99.8

Q ss_pred             EEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chhhhcccCc
Q 023335          104 SLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIACKDAV  172 (283)
Q Consensus       104 ~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ad  172 (283)
                      +++|.+|||||||+ ++++....  ...+.++.+........++  ..+.+|||||...+..        ....+++++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999 99887533  4444444444444555555  5688999999887654        2345678999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNIN  251 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  251 (283)
                      ++++|+|.++..+.... .+...++..  ..|+++|+||+|+.    ..  .   .. .......+. .++++|+++|.|
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~----~~--~---~~-~~~~~~~~~~~~~~~Sa~~~~g  145 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNI----KE--E---DE-AAEFYSLGFGEPIPISAEHGRG  145 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccC----Ch--H---HH-HHHHHhcCCCCeEEEecccCCC
Confidence            99999999876554432 222223322  35668999999962    11  1   11 222344566 789999999999


Q ss_pred             HHHHHHHHHHHH
Q 023335          252 VNKIFKFIMAKL  263 (283)
Q Consensus       252 v~~lf~~l~~~i  263 (283)
                      ++++|+++.+.+
T Consensus       146 v~~l~~~l~~~~  157 (157)
T cd01894         146 IGDLLDAILELL  157 (157)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.82  E-value=1.6e-19  Score=148.84  Aligned_cols=154  Identities=13%  Similarity=0.092  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccc-----------------cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQ-----------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  163 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  163 (283)
                      +|+++|.+|+|||||+ .+++........                 +...+.....+...  ...+.+|||+|...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            4899999999999999 998876653221                 11122222222233  467899999999988888


Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------  236 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-------  236 (283)
                      +..+++.+|++++|+|+++..+... ..++..+..  .+.|+++|+||+|+   ..+.......+.+++..+.       
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~---~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDR---VGEEDLEEVLREIKELLGLIGFISTK  152 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCC---cchhcHHHHHHHHHHHHccccccchh
Confidence            8889999999999999988665443 344444443  35677899999997   2222222223444444443       


Q ss_pred             -------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          237 -------MKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       237 -------~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                             ...+++++||++|.|++++|+++.+.+
T Consensus       153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                   346789999999999999999999886

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.82  E-value=2e-19  Score=172.55  Aligned_cols=155  Identities=12%  Similarity=0.181  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc-------ccccc-c------cceeeeeEEEEEE-----CCeEEEEEEEeCCCCCCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE-------QERSL-Q------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS  160 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~-------~~~~~-~------t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~  160 (283)
                      -+|+++|..++|||||+ +++...       +...+ .      ..|.++....+.+     ++..+.+++|||||+++|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            47999999999999999 998642       22111 1      2366665554433     567789999999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT  240 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~  240 (283)
                      ......+++.+|++|+|||+++..+++....|...+.   .+.|.|+|+||+|+.    ...   ..+...++.+.+++.
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~----~~~---~~~~~~el~~~lg~~  153 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLP----SAD---PERVKKEIEEVIGLD  153 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCC----ccC---HHHHHHHHHHHhCCC
Confidence            9999999999999999999999877777777765443   245668999999962    111   123334555556653


Q ss_pred             ---EEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          241 ---LFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       241 ---~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                         ++++||++|.|++++|++|.+.+..
T Consensus       154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       154 ASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence               7899999999999999999987743

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=8.3e-19  Score=158.39  Aligned_cols=249  Identities=16%  Similarity=0.156  Sum_probs=165.9

Q ss_pred             hhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCc--c----cccccccCCCCCCCCCCc
Q 023335            2 AKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPA--V----RYQKLTRRSSSESSPAPD   75 (283)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~--~----~~~~~~~~~~~~~~p~p~   75 (283)
                      +.|..|+..||.+++..+|.||.|.++..-+..+.+.+|+.+-+++++-..--+.  .    -|..+...     .|-|-
T Consensus        71 ~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g-----~~~~I  145 (444)
T COG1160          71 ELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFG-----EPVPI  145 (444)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCC-----CceEe
Confidence            3588999999999999999999999999999999999999888888876633221  1    12222221     22233


Q ss_pred             ccccccccc------ccccCCCCCCCCC---ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEEC
Q 023335           76 TMEAGLVEL------SRTFSSGYDTDSD---LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQ  143 (283)
Q Consensus        76 ~~~~g~~~~------~~~~~~~~~~~~~---~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~  143 (283)
                      .+.+|..-.      ..... ..+....   ...+||+++|.||||||||+ ++++.+..  ...+.+..|.....+..+
T Consensus       146 SA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~  224 (444)
T COG1160         146 SAEHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD  224 (444)
T ss_pred             ehhhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC
Confidence            344442211      00111 1111111   24699999999999999999 99998876  777766677767777788


Q ss_pred             CeEEEEEEEeCCCCCCcccc-----------hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecC
Q 023335          144 GARIAFSIWDVGGDSRSFDH-----------VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF  212 (283)
Q Consensus       144 ~~~~~l~i~Dt~G~~~~~~~-----------~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~  212 (283)
                      ++.  +.+.||+|..+-...           ....+..+|++++|.|.+..-+-++.+ ....+.+  ...+.|||.||+
T Consensus       225 ~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKW  299 (444)
T COG1160         225 GRK--YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKW  299 (444)
T ss_pred             CeE--EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEcc
Confidence            877  456899996542211           123467999999999999876655432 2222222  255778999999


Q ss_pred             CCCCCCCCC--cccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          213 DDFVRLPPD--LQWTIATQARAYAKAM-KATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       213 DL~~~l~~~--~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      |+   +..+  ......++++...... .++.+.+||++|.+++++|+.+.+..-
T Consensus       300 Dl---~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         300 DL---VEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             cc---CCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            97   3321  1111233333322222 357889999999999999999876543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.81  E-value=2.6e-19  Score=150.32  Aligned_cols=116  Identities=20%  Similarity=0.250  Sum_probs=88.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccC-cEEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA-VAILFMFD  179 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a-d~iilv~D  179 (283)
                      +|+++|++|||||||+ ++..+.+...++++..+.........+....+.+||+||+++++.....+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999 999988875555444443322222224457799999999999988888899999 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHhH----CCCCceEEEeecCCCCCC
Q 023335          180 LTSR-CTLNSIVGWYSEARKW----NQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       180 ~~~~-~s~~~~~~~~~~i~~~----~~~~~~ilvgnK~DL~~~  217 (283)
                      +++. +++..+..|+..+...    .+..|++|++||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9998 7788877666555332    245566899999998543

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.81  E-value=3e-19  Score=142.40  Aligned_cols=146  Identities=13%  Similarity=0.131  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc------chhhhc--cc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--KD  170 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~  170 (283)
                      ++|+++|.||||||||+ ++++.+.. .++|.++.+.....+.+.+.  .+.++|+||......      ....++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~--~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ--QVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE--EEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc--eEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            58999999999999999 99999876 88887777877778888774  467899999644332      233444  68


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      .|++|+|.|+++.+.-   .....++.+.  ..|.|+|.||+|+      ..+.....+...+++.+|++.+.+||++++
T Consensus        79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P~vvvlN~~D~------a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~  147 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN---LYLTLQLLEL--GIPVVVVLNKMDE------AERKGIEIDAEKLSERLGVPVIPVSARTGE  147 (156)
T ss_dssp             SSEEEEEEEGGGHHHH---HHHHHHHHHT--TSSEEEEEETHHH------HHHTTEEE-HHHHHHHHTS-EEEEBTTTTB
T ss_pred             CCEEEEECCCCCHHHH---HHHHHHHHHc--CCCEEEEEeCHHH------HHHcCCEECHHHHHHHhCCCEEEEEeCCCc
Confidence            9999999999875422   2333344432  4567899999995      222223345778888899999999999999


Q ss_pred             CHHHHHHHH
Q 023335          251 NVNKIFKFI  259 (283)
Q Consensus       251 ~v~~lf~~l  259 (283)
                      |++++++.|
T Consensus       148 g~~~L~~~I  156 (156)
T PF02421_consen  148 GIDELKDAI  156 (156)
T ss_dssp             THHHHHHHH
T ss_pred             CHHHHHhhC
Confidence            999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01895 EngA2 EngA2 subfamily

Probab=99.81  E-value=2.5e-18  Score=139.33  Aligned_cols=154  Identities=20%  Similarity=0.287  Sum_probs=102.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc----------c-hh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------H-VP  165 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~-~~  165 (283)
                      .++|+++|.+|+|||||+ ++++..+.  ...+++..+.....+..++..  +.+|||+|......          . ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999 99887644  444444444444455556544  67899999754311          0 12


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc----CCcE
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATL  241 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~----~~~~  241 (283)
                      .++..+|++++|+|.++..+.... .++..+..  .+.|+++++||+|+.   ... ..........+.+..    ..++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~---~~~-~~~~~~~~~~~~~~~~~~~~~~~  152 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLV---EKD-SKTMKEFKKEIRRKLPFLDYAPI  152 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccC---Ccc-HHHHHHHHHHHHhhcccccCCce
Confidence            346799999999999998776553 33333332  245668999999972   211 011122222333333    3689


Q ss_pred             EEEcCCCCcCHHHHHHHHHHH
Q 023335          242 FFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       242 ~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      +++||++++|++++++++.+.
T Consensus       153 ~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         153 VFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEEeccCCCCHHHHHHHHHHh
Confidence            999999999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.80  E-value=8.9e-19  Score=145.77  Aligned_cols=155  Identities=14%  Similarity=0.169  Sum_probs=103.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCC----------Ccccchhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVPI  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~  166 (283)
                      ..++|+++|.+|||||||+ ++++..+. ...++.+.+.......+   ...+.+|||+|..          .+..+...
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            4689999999999999999 99987754 33334443332222222   2578999999943          23334445


Q ss_pred             hcccC---cEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335          167 ACKDA---VAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  241 (283)
Q Consensus       167 ~~~~a---d~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
                      +++.+   +++++|+|.++..+...  +..|+   ..  ...+.++++||+|+   ++........+.+.+........+
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~--~~~~~iiv~nK~Dl---~~~~~~~~~~~~i~~~l~~~~~~~  171 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE--YGIPVLIVLTKADK---LKKGERKKQLKKVRKALKFGDDEV  171 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH--cCCcEEEEEECccc---CCHHHHHHHHHHHHHHHHhcCCce
Confidence            55544   67888999887654433  22333   21  23456899999997   333222223344555555556789


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHh
Q 023335          242 FFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       242 ~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      +++||+++.|++++|+.|.+.+-
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhc
Confidence            99999999999999999987664

>PRK00089 era GTPase Era; Reviewed

Probab=99.80  E-value=2.1e-18  Score=152.77  Aligned_cols=171  Identities=17%  Similarity=0.133  Sum_probs=115.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chhhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIA  167 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~  167 (283)
                      +.-.|+++|.+|||||||+ ++++....  ...+.+..+........+  ...+.+|||||......        .....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            4567999999999999999 99988765  333322222222222222  36789999999765322        22335


Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSA  246 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa  246 (283)
                      +.++|++++|+|+++..+- ....+++.+..  .+.|.++|+||+|+   ..  ......+....+.+..+ ..++++||
T Consensus        82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~--~~~pvilVlNKiDl---~~--~~~~l~~~~~~l~~~~~~~~i~~iSA  153 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGP-GDEFILEKLKK--VKTPVILVLNKIDL---VK--DKEELLPLLEELSELMDFAEIVPISA  153 (292)
T ss_pred             HhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh--cCCCEEEEEECCcC---CC--CHHHHHHHHHHHHhhCCCCeEEEecC
Confidence            6899999999999883221 11223333332  24567899999997   21  12223455566666555 57899999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335          247 THNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP  279 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  279 (283)
                      +++.|++++++++.+.+...+|....+...+.+
T Consensus       154 ~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~  186 (292)
T PRK00089        154 LKGDNVDELLDVIAKYLPEGPPYYPEDQITDRP  186 (292)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            999999999999999999988877776555543

>PRK11058 GTPase HflX; Provisional

Probab=99.80  E-value=1.2e-18  Score=161.04  Aligned_cols=155  Identities=15%  Similarity=0.144  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--ccchh------hhccc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVP------IACKD  170 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~------~~~~~  170 (283)
                      .+|+++|.+|||||||+ ++++..+. .+.+.++.+.....+.+.+. ..+.+|||+|..+.  ..++.      ..+++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999 99987755 45555556666666666553 24678999997432  12222      23689


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCC
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATH  248 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~  248 (283)
                      ||++|+|+|++++.+++.+..|...+.... .+.|+++|+||+|+.   +..   .  ....  ....+.+ ++++||++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~---~~~---~--~~~~--~~~~~~~~~v~ISAkt  346 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML---DDF---E--PRID--RDEENKPIRVWLSAQT  346 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC---Cch---h--HHHH--HHhcCCCceEEEeCCC
Confidence            999999999999988888765555444433 245668999999972   111   0  0111  1123555 48899999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023335          249 NINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~  266 (283)
                      |.|+++++++|.+.+...
T Consensus       347 G~GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        347 GAGIPLLFQALTERLSGE  364 (426)
T ss_pred             CCCHHHHHHHHHHHhhhc
Confidence            999999999999988543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.79  E-value=1.1e-18  Score=143.54  Aligned_cols=148  Identities=13%  Similarity=0.141  Sum_probs=96.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----------cccch
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV  164 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~  164 (283)
                      ....++|+|+|.+|+|||||+ ++++..+. ...++.+.+.....+..++   .+.+|||+|...          +..+.
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            345789999999999999999 99988644 3333434333223333332   588999999532          33333


Q ss_pred             hhhccc---CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--C
Q 023335          165 PIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--A  239 (283)
Q Consensus       165 ~~~~~~---ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~  239 (283)
                      ..|++.   ++++++|+|.+++-+..+. .++..+..  ...|.++|+||+|+   ..........+++++..+..+  .
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--~~~pviiv~nK~D~---~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--RGIPVLIVLTKADK---LKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccc---CCHHHHHHHHHHHHHHHhhccCCC
Confidence            455553   5799999999886555544 22333332  24566799999997   322222333556666666654  4


Q ss_pred             cEEEEcCCCCcCHH
Q 023335          240 TLFFSSATHNINVN  253 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~  253 (283)
                      .+|++||++|+|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            79999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.78  E-value=4.5e-18  Score=162.57  Aligned_cols=156  Identities=11%  Similarity=0.078  Sum_probs=105.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      .+..+|+++|..++|||||+ ++.+..+. ...++++.+.....+.+++.. .+.||||||++.|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            34578999999999999999 99988776 333444444444455554332 6889999999999999998999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCCc
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHNI  250 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~---~~~~~~--~~~~e~Sa~~~~  250 (283)
                      +|||+++...-+....| ..+..  .+.|.|+++||+|+.    ........+.+..   ....++  .+++++||++|+
T Consensus       164 LVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~----~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKP----EANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECcccc----cCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            99999874322222222 22221  245668999999962    1111111122111   112222  468999999999


Q ss_pred             CHHHHHHHHHH
Q 023335          251 NVNKIFKFIMA  261 (283)
Q Consensus       251 ~v~~lf~~l~~  261 (283)
                      |++++|+++..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.78  E-value=1.7e-18  Score=145.41  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=77.7

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh----hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  222 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~  222 (283)
                      ..+.||||||++.|.......+..+|++++|+|+++.    .+++.+..|    .. ....++|||+||+|+   .....
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~~~~iiivvNK~Dl---~~~~~  154 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MGLKHIIIVQNKIDL---VKEEQ  154 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cCCCcEEEEEEchhc---cCHHH
Confidence            6789999999988877666777889999999999873    333333222    22 122345789999997   22111


Q ss_pred             ccchHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          223 QWTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       223 ~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      .....++++++++.+   +++++++||++|+|++++|+++.+.+..
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            112234455555543   5689999999999999999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.78  E-value=2.9e-18  Score=164.58  Aligned_cols=144  Identities=14%  Similarity=0.085  Sum_probs=109.3

Q ss_pred             cCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc------hhhhc--ccCcEEEE
Q 023335          107 GDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--KDAVAILF  176 (283)
Q Consensus       107 G~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~--~~ad~iil  176 (283)
                      |++|||||||+ ++.+..+. .++++++.+.....+.+++..  +++|||||++.+...      .+.++  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999 99988876 777877777777777777654  689999999887654      34444  37899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |+|.++.+   ....+..++.+  .+.|.++|+||+|+.      ++.....+.+++++..+++++++||++|+|++++|
T Consensus        79 VvDat~le---r~l~l~~ql~~--~~~PiIIVlNK~Dl~------~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~  147 (591)
T TIGR00437        79 VVDASNLE---RNLYLTLQLLE--LGIPMILALNLVDEA------EKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLK  147 (591)
T ss_pred             EecCCcch---hhHHHHHHHHh--cCCCEEEEEehhHHH------HhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHH
Confidence            99998743   22233334433  245668999999961      12223445678888999999999999999999999


Q ss_pred             HHHHHHH
Q 023335          257 KFIMAKL  263 (283)
Q Consensus       257 ~~l~~~i  263 (283)
                      +++.+..
T Consensus       148 ~~i~~~~  154 (591)
T TIGR00437       148 DAIRKAI  154 (591)
T ss_pred             HHHHHHh
Confidence            9998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.78  E-value=3.1e-18  Score=159.86  Aligned_cols=146  Identities=19%  Similarity=0.266  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--------ccchhhhcc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIACK  169 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~  169 (283)
                      .+|+++|.+|||||||+ ++++....  ...+.++.+.....+.+++  ..+.+|||+|.+..        ......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999 99987753  5555555566666667766  66899999998862        223445678


Q ss_pred             cCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcC
Q 023335          170 DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSA  246 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa  246 (283)
                      ++|++|+|+|+++..+..  .+..|+...     +.|+|+|+||+|+.    .  .   .+...++ ..+++ .++++||
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~----~--~---~~~~~~~-~~lg~~~~~~iSa  144 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGP----D--E---EADAYEF-YSLGLGEPYPISA  144 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCc----c--c---hhhHHHH-HhcCCCCCEEEEe
Confidence            999999999998864433  334555432     55778999999951    1  1   1222233 34566 4899999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q 023335          247 THNINVNKIFKFIMAKL  263 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i  263 (283)
                      ++|.|++++|+.+.+..
T Consensus       145 ~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        145 EHGRGIGDLLDAILEEL  161 (435)
T ss_pred             eCCCCHHHHHHHHHhhC
Confidence            99999999999998843

>cd04163 Era Era subfamily

Probab=99.78  E-value=6.9e-18  Score=135.49  Aligned_cols=153  Identities=18%  Similarity=0.123  Sum_probs=100.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chhhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~  168 (283)
                      ..+|+++|.+|+|||||+ ++.+....  ...+.+.....  ..........+.+|||+|......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI--RGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceE--EEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            578999999999999999 99887654  22221111111  111223346788999999765432        233457


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSAT  247 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~  247 (283)
                      ..+|++++|+|+++..+.. ...+...+...  +.|.++|+||+|+   ..  ......+....+....+ .+++++|++
T Consensus        81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl---~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~  152 (168)
T cd04163          81 KDVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDL---VK--DKEDLLPLLEKLKELGPFAEIFPISAL  152 (168)
T ss_pred             HhCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhc---cc--cHHHHHHHHHHHHhccCCCceEEEEec
Confidence            8999999999999872211 12333444332  4567899999996   11  12223444445555553 688999999


Q ss_pred             CCcCHHHHHHHHHHH
Q 023335          248 HNINVNKIFKFIMAK  262 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~  262 (283)
                      ++.|++++++.|.+.
T Consensus       153 ~~~~~~~l~~~l~~~  167 (168)
T cd04163         153 KGENVDELLEEIVKY  167 (168)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.78  E-value=1.2e-17  Score=155.93  Aligned_cols=248  Identities=17%  Similarity=0.184  Sum_probs=144.3

Q ss_pred             hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcc------cccccccCCCCCCCCCCccc
Q 023335            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM   77 (283)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~------~~~~~~~~~~~~~~p~p~~~   77 (283)
                      +..++..++.+.+..++.+|.+.++......+.+.++....+++++-...-...      .+..+...     .+-+..+
T Consensus        70 ~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~-----~~~~iSa  144 (435)
T PRK00093         70 IREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLG-----EPYPISA  144 (435)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCC-----CCEEEEe
Confidence            445566677888888899999887776665566666665555555433111100      11111100     0111111


Q ss_pred             ccccc--cc----ccccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEE
Q 023335           78 EAGLV--EL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIA  148 (283)
Q Consensus        78 ~~g~~--~~----~~~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~  148 (283)
                      ..|..  ..    ................++|+++|.+|+|||||+ ++++....  ...+.+..+.....+..++..  
T Consensus       145 ~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--  222 (435)
T PRK00093        145 EHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--  222 (435)
T ss_pred             eCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--
Confidence            11110  00    000000001111234699999999999999999 99977643  555545455444455555544  


Q ss_pred             EEEEeCCCCCCcccc-----------hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335          149 FSIWDVGGDSRSFDH-----------VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       149 l~i~Dt~G~~~~~~~-----------~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~  217 (283)
                      +.+|||+|..+....           ...+++.+|++|+|+|+++..+.++.. +...+..  ...+.|+|+||+|+   
T Consensus       223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl---  296 (435)
T PRK00093        223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDL---  296 (435)
T ss_pred             EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccC---
Confidence            678999996543221           123678999999999999987776643 3333333  24567899999997   


Q ss_pred             CCCCcccchHHHHHH-HHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          218 LPPDLQWTIATQARA-YAKAMKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       218 l~~~~~~~~~~~~~~-~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ..+.......++... +.....++++++||++|.|++++|+.+.+...
T Consensus       297 ~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        297 VDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            221111112222222 22223578999999999999999999887553

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.78  E-value=3.3e-18  Score=163.99  Aligned_cols=155  Identities=16%  Similarity=0.122  Sum_probs=112.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC---ccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN---EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~---~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      +.|+++|..++|||||+ ++++.   .+. +...+++.++....+..++  ..+.+||+||+++|......++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            36899999999999999 99863   333 3334555565555666665  67899999999998877778889999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCcccchHHHHHHHHHHc----CCcEEEEcCC
Q 023335          176 FMFDLTS---RCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATLFFSSAT  247 (283)
Q Consensus       176 lv~D~~~---~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~----~~~~~e~Sa~  247 (283)
                      +|+|+++   +++++.+. +   +.. . +.+ +|+|+||+|+   .+........+++.++++..    +++++++||+
T Consensus        79 LVVDa~~G~~~qT~ehl~-i---l~~-l-gi~~iIVVlNK~Dl---v~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA-V---LDL-L-GIPHTIVVITKADR---VNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEECCCCCcHHHHHHHH-H---HHH-c-CCCeEEEEEECCCC---CCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            9999998   44554432 2   222 1 345 6899999997   22221122355666776665    4789999999


Q ss_pred             CCcCHHHHHHHHHHHHhCC
Q 023335          248 HNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~  266 (283)
                      +|+|++++++.+.+.+-..
T Consensus       150 tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       150 TGQGIGELKKELKNLLESL  168 (581)
T ss_pred             CCCCchhHHHHHHHHHHhC
Confidence            9999999999988776544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.77  E-value=1e-17  Score=144.17  Aligned_cols=196  Identities=14%  Similarity=0.153  Sum_probs=142.8

Q ss_pred             hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceeeEEE----EEcCCCCcHHHhH-
Q 023335           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKIS----LLGDCQIGKTSFV-  117 (283)
Q Consensus        43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~KI~----vlG~~~vGKSSLi-  117 (283)
                      .+++++|.||.||.++..+++--..     .|..+..|..+         +...-..++|.+    +||.||+|||||+ 
T Consensus       149 ~~~~i~arGG~GG~gn~~fls~~~r-----~p~~~~~G~~G---------~e~~~~lELKsiadvGLVG~PNAGKSTLL~  214 (366)
T KOG1489|consen  149 GDRVIAARGGEGGKGNKFFLSNENR-----SPKFSKPGLNG---------EERVIELELKSIADVGLVGFPNAGKSTLLN  214 (366)
T ss_pred             CcEEEEeecCCCCccceeecccccc-----CcccccCCCCC---------ceEEEEEEeeeecccceecCCCCcHHHHHH
Confidence            4678999999998887666652222     34555555444         333334456654    9999999999999 


Q ss_pred             hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhc---ccCcEEEEEEECCCh---hhH
Q 023335          118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSR---CTL  186 (283)
Q Consensus       118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~ad~iilv~D~~~~---~s~  186 (283)
                      ++...+.. ..|+.|+......++.+++.. .+.+-|.||.-+    .+.+-..|+   ..|+..++|+|++..   ..+
T Consensus       215 als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~  293 (366)
T KOG1489|consen  215 ALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPW  293 (366)
T ss_pred             HhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHH
Confidence            99988887 888866666655666666543 388899998543    345555555   588999999999988   888


Q ss_pred             HHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCHHHHHHHHHH
Q 023335          187 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       187 ~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      +.++.+..++..|..   +.|.+||+||+|+    ++.    ..+.+.++++...-+ ++++||++++|+.++++.|-+
T Consensus       294 ~~~~lL~~ELe~yek~L~~rp~liVaNKiD~----~ea----e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  294 QQLQLLIEELELYEKGLADRPALIVANKIDL----PEA----EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             HHHHHHHHHHHHHhhhhccCceEEEEeccCc----hhH----HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence            888888888877743   5677899999995    211    123346777777655 899999999999999887754

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.77  E-value=5.8e-18  Score=164.22  Aligned_cols=156  Identities=13%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccc--eeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMA--GLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~--~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      .+..+|+|+|..++|||||+ ++.+..+. ....+.  ....+...+..++....+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            35678999999999999999 99887776 333222  222333334444556889999999999999999999999999


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEc
Q 023335          174 ILFMFDLTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSS  245 (283)
Q Consensus       174 iilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~---~~~~~~--~~~~e~S  245 (283)
                      +|+|+|+++.   .+++.+.    .+..  .+.|.|+++||+|+.    ........+++..   +...++  ++++++|
T Consensus       322 aILVVDA~dGv~~QT~E~I~----~~k~--~~iPiIVViNKiDl~----~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VS  391 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAIN----YIQA--ANVPIIVAINKIDKA----NANTERIKQQLAKYNLIPEKWGGDTPMIPIS  391 (742)
T ss_pred             EEEEEECcCCCChhhHHHHH----HHHh--cCceEEEEEECCCcc----ccCHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence            9999999874   3443332    2221  245668999999962    2111111222221   123333  6899999


Q ss_pred             CCCCcCHHHHHHHHHHHH
Q 023335          246 ATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i  263 (283)
                      |++|.|++++|++|....
T Consensus       392 AktG~GIdeLle~I~~l~  409 (742)
T CHL00189        392 ASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCCHHHHHHhhhhhh
Confidence            999999999999988754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.77  E-value=5.5e-18  Score=166.51  Aligned_cols=249  Identities=16%  Similarity=0.136  Sum_probs=147.2

Q ss_pred             hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcc------cccccccCCCCCCCCCCccc
Q 023335            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM   77 (283)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~------~~~~~~~~~~~~~~p~p~~~   77 (283)
                      +..++..++......++.+|.+.++......+.+.++...-+++++-...-...      .+..+..     ..+-|..+
T Consensus       344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~-----~~~~~iSA  418 (712)
T PRK09518        344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGL-----GEPYPISA  418 (712)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCC-----CCeEEEEC
Confidence            445566666777788888999888776666555666665555555433111000      0111100     00111111


Q ss_pred             ccccc--cc----ccccCCCCCCC---CCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCe
Q 023335           78 EAGLV--EL----SRTFSSGYDTD---SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGA  145 (283)
Q Consensus        78 ~~g~~--~~----~~~~~~~~~~~---~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~  145 (283)
                      ..|..  ..    ...........   .....+||+++|.+|||||||+ ++++.+..  ..+++++.+.....+.+++.
T Consensus       419 ~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~  498 (712)
T PRK09518        419 MHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE  498 (712)
T ss_pred             CCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC
Confidence            11211  00    00000000000   0123479999999999999999 99998753  66666666766667777776


Q ss_pred             EEEEEEEeCCCCCC----------cccch-hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          146 RIAFSIWDVGGDSR----------SFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~----------~~~~~-~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      .  +.+|||+|..+          |..+. ..+++.+|++++|+|+++..++++.. ++..+..  .+.|.|||+||+||
T Consensus       499 ~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~--~~~piIiV~NK~DL  573 (712)
T PRK09518        499 D--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD--AGRALVLVFNKWDL  573 (712)
T ss_pred             E--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEEchhc
Confidence            5  55899999642          11111 23468999999999999998888765 3444433  24577899999997


Q ss_pred             CCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          215 FVRLPPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                         .+.........+....... ...+.+++||++|.|++++|+.+.+.+.+
T Consensus       574 ---~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        574 ---MDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ---CChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence               2221111111111111111 13467899999999999999999987765

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.9e-18  Score=131.12  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=119.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++.+|.++|..|+|||+++ ++--++.....||.|++..  ++  ..++.++++||.+|+...+.+|+.||.+.|++|+|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve--~v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE--TV--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc--cc--ccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            5789999999999999999 9988888888899887754  33  33678899999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhH-CCCCceEEEeecCCCCCCCCCCcccchHHHH-----HHHHHHcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIV-GWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQA-----RAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~-~~~~~i~~~-~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      +|.+|++...-.. .++..+.+- ......++++||.|.    +..   ....++     ..-.+..-+.+|++||.+|+
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~----~~~---~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~  165 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY----SGA---LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGE  165 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc----hhh---hhHHHHHHHhChHHHhhheeEEEeecccccc
Confidence            9999988665554 333333332 234566799999994    221   111111     11122233678999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023335          251 NVNKIFKFIMAKLFN  265 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~  265 (283)
                      |+++.++|+.+.+..
T Consensus       166 Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  166 GLDPAMDWLQRPLKS  180 (182)
T ss_pred             CCcHHHHHHHHHHhc
Confidence            999999999988754

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.76  E-value=1.9e-17  Score=162.00  Aligned_cols=154  Identities=11%  Similarity=0.079  Sum_probs=107.7

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ..+...|+|+|..++|||||+ ++.+..+. ........+.....+.+++  ..+.||||||++.|..++..+++.+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            456688999999999999999 99887766 3333333333334455555  5688999999999999999899999999


Q ss_pred             EEEEECCCh---hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHH---HHHHHcC--CcEEEEcC
Q 023335          175 LFMFDLTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR---AYAKAMK--ATLFFSSA  246 (283)
Q Consensus       175 ilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~---~~~~~~~--~~~~e~Sa  246 (283)
                      |||||+++.   ++++.+    ..+.  ..+.|+||++||+|+.    ......+..++.   .++..++  ++++++||
T Consensus       365 ILVVdAddGv~~qT~e~i----~~a~--~~~vPiIVviNKiDl~----~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA  434 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI----NHAK--AAGVPIIVAINKIDKP----GANPDRVKQELSEYGLVPEEWGGDTIFVPVSA  434 (787)
T ss_pred             EEEEECCCCCCHhHHHHH----HHHH--hcCCcEEEEEECcccc----ccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence            999999874   333332    1122  1245668999999962    111111222221   1233444  68999999


Q ss_pred             CCCcCHHHHHHHHHHH
Q 023335          247 THNINVNKIFKFIMAK  262 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~  262 (283)
                      ++|.||+++|++|...
T Consensus       435 ktG~GI~eLle~I~~~  450 (787)
T PRK05306        435 KTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCchHHHHhhhhh
Confidence            9999999999998753

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.76  E-value=3.5e-17  Score=140.22  Aligned_cols=148  Identities=19%  Similarity=0.233  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc----c---chhhhcccCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----D---HVPIACKDAV  172 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~---~~~~~~~~ad  172 (283)
                      +|+++|.+|||||||+ ++.+.... ..++.+..+.....+.+++  ..+++||+||.....    .   ....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999 99887644 5555444455555666665  468889999975432    1   2234689999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHH--------------------------------------------HHHhHC-------
Q 023335          173 AILFMFDLTSRC-TLNSIVGWYS--------------------------------------------EARKWN-------  200 (283)
Q Consensus       173 ~iilv~D~~~~~-s~~~~~~~~~--------------------------------------------~i~~~~-------  200 (283)
                      ++++|+|+++.+ ..+.+.+.++                                            +..-++       
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 3333322222                                            111000       


Q ss_pred             ---------------CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          201 ---------------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       201 ---------------~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                                     ...|.++|+||+|+   .       ..+++..+++.  ..++++||++|.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl---~-------~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDL---I-------SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccC---C-------CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                           11244799999996   1       13344455553  4589999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.75  E-value=1.7e-17  Score=154.59  Aligned_cols=148  Identities=21%  Similarity=0.263  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC--------cccchhhhccc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACKD  170 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~  170 (283)
                      ||+++|.+|||||||+ ++++....  ...+.+..+.....+.+++.  .+.+|||||...        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999 99987753  45555555555556666664  488999999643        33445567899


Q ss_pred             CcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCC
Q 023335          171 AVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSAT  247 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~  247 (283)
                      +|++++|+|.++..+..+  +..|+.   +  .+.|.++|+||+|+.   ...   .   ...+ ...+++ .++++||+
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~---~--~~~piilVvNK~D~~---~~~---~---~~~~-~~~lg~~~~~~vSa~  143 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLR---K--SGKPVILVANKIDGK---KED---A---VAAE-FYSLGFGEPIPISAE  143 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHH---H--hCCCEEEEEECccCC---ccc---c---cHHH-HHhcCCCCeEEEeCC
Confidence            999999999987644433  334443   2  245678999999962   111   1   1122 235566 78999999


Q ss_pred             CCcCHHHHHHHHHHHHhCC
Q 023335          248 HNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~  266 (283)
                      +|.|++++++++.+.+...
T Consensus       144 ~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       144 HGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             cCCChHHHHHHHHHhcCcc
Confidence            9999999999999887553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG1159 Era GTPase [General function prediction only]

Probab=99.75  E-value=5e-17  Score=139.71  Aligned_cols=172  Identities=19%  Similarity=0.214  Sum_probs=120.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chhh
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPI  166 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~  166 (283)
                      .+.--|+++|.||||||||+ ++++.+..  +..+.+.-+.....+..+  +.++.+.||||-.+-..        ....
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            45677999999999999999 99999877  666633333333333333  56788999999765322        2344


Q ss_pred             hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS  245 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~S  245 (283)
                      .+.++|+++||+|+++...-. -...++.++.  .+.|+|++.||+|.   ..++.  ........+...... ..+++|
T Consensus        82 sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~--~~~pvil~iNKID~---~~~~~--~l~~~~~~~~~~~~f~~ivpiS  153 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPG-DEFILEQLKK--TKTPVILVVNKIDK---VKPKT--VLLKLIAFLKKLLPFKEIVPIS  153 (298)
T ss_pred             HhccCcEEEEEEeccccCCcc-HHHHHHHHhh--cCCCeEEEEEcccc---CCcHH--HHHHHHHHHHhhCCcceEEEee
Confidence            678999999999998743221 1233444444  34577999999996   22211  112333333333333 678899


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335          246 ATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP  279 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  279 (283)
                      |++|.|++.+.+.+...+.+.+|....+..+++|
T Consensus       154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~  187 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRP  187 (298)
T ss_pred             ccccCCHHHHHHHHHHhCCCCCCcCChhhccCCh
Confidence            9999999999999999999999999888777765

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.74  E-value=3.4e-17  Score=157.32  Aligned_cols=156  Identities=13%  Similarity=0.195  Sum_probs=112.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCc--cc---------ccc---ccceeeeeEEEEEE-----CCeEEEEEEEeCCCCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR  159 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~--~~---------~~~---~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~  159 (283)
                      -.+|+++|..++|||||+ +++...  +.         +..   .+.|.++....+.+     ++..+.+++|||||+..
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            358999999999999999 997531  11         111   12355544433333     56678999999999999


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA  239 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~  239 (283)
                      |...+..+++.+|++|+|+|+++....+....|.....   .+.|.|+|+||+|+    ....   ......++.+.+++
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl----~~a~---~~~v~~ei~~~lg~  156 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDL----PAAD---PERVKQEIEDVIGI  156 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCC----Cccc---HHHHHHHHHHHhCC
Confidence            99889999999999999999998766666666654432   24566899999996    2111   12223344444565


Q ss_pred             c---EEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          240 T---LFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       240 ~---~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      .   ++++||++|.|+++++++|.+.+..
T Consensus       157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        157 DASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             CcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            4   8999999999999999999988754

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.6e-18  Score=136.62  Aligned_cols=159  Identities=19%  Similarity=0.192  Sum_probs=117.8

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCcc---c-----cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhh
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQ---E-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA  167 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~---~-----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~  167 (283)
                      ....+.|+|+|..++|||||+ +......   .     .-.+|.|.+..  ++.++  ...+.+||.+||+..+++|..|
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHH
Confidence            345688999999999999999 7643221   1     23346666654  44444  4558899999999999999999


Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH---HHHc---CC
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY---AKAM---KA  239 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~---~~~~---~~  239 (283)
                      |..++++|+++|.++++-|+....-++.+...  ....|.++.+||.|+.+..       ...++...   ++..   .+
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~-------~~~El~~~~~~~e~~~~rd~  162 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM-------EAAELDGVFGLAELIPRRDN  162 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh-------hHHHHHHHhhhhhhcCCccC
Confidence            99999999999999999999887666666554  2345557889999963211       12222222   3333   35


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          240 TLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ++..+||.+|+||++-.+|+++.+..+
T Consensus       163 ~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  163 PFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccccchhhhcccHHHHHHHHHHHHhhc
Confidence            678899999999999999999998766

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.74  E-value=4.6e-17  Score=131.07  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----------cccchhhhcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIACK  169 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~  169 (283)
                      +|+++|.+|+|||||+ .++++.+. ...++.+.+.....+..++   .+.+|||+|...          +......|+.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            4899999999999999 99966655 3444545444444444443   788999999433          2333344444


Q ss_pred             ---cCcEEEEEEECCChhh--HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH--HcCCcEE
Q 023335          170 ---DAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--AMKATLF  242 (283)
Q Consensus       170 ---~ad~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~  242 (283)
                         ..+++++++|.++..+  ...+..|+...     ..|.++|+||+|+   .................+  ....+++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~---~~~~~~~~~~~~~~~~l~~~~~~~~~~  149 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADK---LKKSELAKALKEIKKELKLFEIDPPII  149 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhc---CChHHHHHHHHHHHHHHHhccCCCceE
Confidence               4578899999986532  22334555443     3456899999996   333222222333333333  3446789


Q ss_pred             EEcCCCCcCHHHHHHHHHHH
Q 023335          243 FSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       243 e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      ++||+++.|+.+++++|.+.
T Consensus       150 ~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         150 LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EEecCCCCCHHHHHHHHHHh
Confidence            99999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.73  E-value=7.6e-18  Score=154.93  Aligned_cols=164  Identities=21%  Similarity=0.225  Sum_probs=121.1

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ....++|+++|+.|||||||| .++..+|.+..|..-..+ ..-..+.-..+...+.|++..+..+.....-++.||++.
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc-ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            445799999999999999999 999999986665332111 011222234455788999877766666677789999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhHC---CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-C-cEEEEcCCCC
Q 023335          176 FMFDLTSRCTLNSIV-GWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-A-TLFFSSATHN  249 (283)
Q Consensus       176 lv~D~~~~~s~~~~~-~~~~~i~~~~---~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~e~Sa~~~  249 (283)
                      ++|+++++++++.+. .|+..+++..   .+.|+||||||+|+......    .++.+...+..++. + ..++|||++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----s~e~~~~pim~~f~EiEtciecSA~~~  160 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----SDEVNTLPIMIAFAEIETCIECSALTL  160 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----chhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence            999999999999996 8999999986   57788999999997322111    11222333333332 2 4789999999


Q ss_pred             cCHHHHHHHHHHHHhC
Q 023335          250 INVNKIFKFIMAKLFN  265 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~  265 (283)
                      .++.++|...-+.++.
T Consensus       161 ~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  161 ANVSELFYYAQKAVIH  176 (625)
T ss_pred             hhhHhhhhhhhheeec
Confidence            9999999998877654

>cd00880 Era_like Era (E

Probab=99.73  E-value=7.7e-17  Score=127.94  Aligned_cols=151  Identities=15%  Similarity=0.133  Sum_probs=100.1

Q ss_pred             EEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch-------hhhcccCcEE
Q 023335          105 LLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PIACKDAVAI  174 (283)
Q Consensus       105 vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~ad~i  174 (283)
                      ++|.+|+|||||+ ++++....  ...++............+. ...+.+||++|...+....       ..+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999 98876655  2233333333333333321 4578999999987764333       3477999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHH-HHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      ++|+|.++..+..... |......  ...|.++|+||+|+   ..........+ .........+.+++++||+++.|++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~  153 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDL---LPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID  153 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEcccc---CChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence            9999999987766654 3333322  34566899999997   22211111110 1223333446789999999999999


Q ss_pred             HHHHHHHHH
Q 023335          254 KIFKFIMAK  262 (283)
Q Consensus       254 ~lf~~l~~~  262 (283)
                      ++++++.+.
T Consensus       154 ~l~~~l~~~  162 (163)
T cd00880         154 ELREALIEA  162 (163)
T ss_pred             HHHHHHHhh
Confidence            999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.73  E-value=1.2e-16  Score=156.96  Aligned_cols=152  Identities=13%  Similarity=0.047  Sum_probs=110.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc----------hhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~~  166 (283)
                      +.++|+++|.+|||||||+ ++.+.... .+.+.+..+.....  ++.....+.+|||||...+...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            3579999999999999999 99887655 55554444443333  4444567889999998776432          223


Q ss_pred             hc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335          167 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  244 (283)
Q Consensus       167 ~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  244 (283)
                      ++  .++|++++|+|.++.+.   ...|..++.+.  +.|.++|.||+|+.      ++.....+.+++.+.+|++++++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~--giPvIvVlNK~Dl~------~~~~i~id~~~L~~~LG~pVvpi  148 (772)
T PRK09554         80 YILSGDADLLINVVDASNLER---NLYLTLQLLEL--GIPCIVALNMLDIA------EKQNIRIDIDALSARLGCPVIPL  148 (772)
T ss_pred             HHhccCCCEEEEEecCCcchh---hHHHHHHHHHc--CCCEEEEEEchhhh------hccCcHHHHHHHHHHhCCCEEEE
Confidence            43  48999999999988643   23344555443  45678999999961      12233556778888999999999


Q ss_pred             cCCCCcCHHHHHHHHHHHH
Q 023335          245 SATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ||++|+|++++++.+.+..
T Consensus       149 SA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        149 VSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EeecCCCHHHHHHHHHHhh
Confidence            9999999999999987764

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.73  E-value=2.3e-17  Score=125.85  Aligned_cols=152  Identities=17%  Similarity=0.251  Sum_probs=115.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .+++||.++|-.++|||||+ .+.+.....-.||.|++.  +.+.+++ .+.+.+||.+|+...+.+|..||.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            46899999999999999999 777766667777888664  4555654 6789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHc--------CCcEEEEcC
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--------KATLFFSSA  246 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa  246 (283)
                      |+|.+|+.-|+++..-+-++..-.. ...| .+.+||.|+.   ...       ..++.+.+.        ...+-++||
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll---taa-------~~eeia~klnl~~lrdRswhIq~csa  161 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL---TAA-------KVEEIALKLNLAGLRDRSWHIQECSA  161 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH---hhc-------chHHHHHhcchhhhhhceEEeeeCcc
Confidence            9999999999988765655554322 3344 5789999972   221       122222222        234567999


Q ss_pred             CCCcCHHHHHHHHHHH
Q 023335          247 THNINVNKIFKFIMAK  262 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~  262 (283)
                      .+++|+.+-.+|+...
T Consensus       162 ls~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  162 LSLEGSTDGSDWVQSN  177 (185)
T ss_pred             ccccCccCcchhhhcC
Confidence            9999999888887653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.72  E-value=1.1e-16  Score=157.38  Aligned_cols=154  Identities=18%  Similarity=0.186  Sum_probs=104.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--------ccchhhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIA  167 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~  167 (283)
                      ...+|+|+|.+|||||||+ ++++....  ...++++.+........++  ..+.+|||+|.+..        ......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3578999999999999999 99987654  4455444454444444555  45788999997642        2233456


Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      ++.+|++|+|+|+++.-+..+ ..|.+.++.  .+.|+|+|+||+|+.    ..  .  ......+...++ ..|++||+
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~----~~--~--~~~~~~~~lg~~-~~~~iSA~  419 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQ----AS--E--YDAAEFWKLGLG-EPYPISAM  419 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccc----cc--h--hhHHHHHHcCCC-CeEEEECC
Confidence            889999999999986422211 245555543  356778999999962    11  1  111222222222 35789999


Q ss_pred             CCcCHHHHHHHHHHHHhCC
Q 023335          248 HNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~  266 (283)
                      +|.||+++|+++++.+.+.
T Consensus       420 ~g~GI~eLl~~i~~~l~~~  438 (712)
T PRK09518        420 HGRGVGDLLDEALDSLKVA  438 (712)
T ss_pred             CCCCchHHHHHHHHhcccc
Confidence            9999999999999988653

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.72  E-value=4.3e-17  Score=151.60  Aligned_cols=155  Identities=16%  Similarity=0.121  Sum_probs=99.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cc-------------------------c---ccceeeeeEEEEEECCeE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RS-------------------------L---QMAGLNLINKTLMVQGAR  146 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~-------------------------~---~t~~~~~~~~~~~~~~~~  146 (283)
                      ...++|+++|.+++|||||+ +++...-.  ..                         .   ...|.+.......++...
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            45799999999999999999 99732111  00                         0   012333333333444456


Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc--
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ--  223 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~--  223 (283)
                      +.+.+|||||+++|.......+..+|++|+|+|+++..++... ..++..+.. ....++++++||+|+.   .....  
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~---~~~~~~~  159 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAV---NYDEKRY  159 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccc---cccHHHH
Confidence            7899999999988866555557899999999999873222111 222222322 2223457899999972   11111  


Q ss_pred             cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023335          224 WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF  256 (283)
Q Consensus       224 ~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf  256 (283)
                      ....+++.++++..+     ++++++||++|+|+++++
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            123566777776666     468999999999998754

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.72  E-value=3.8e-17  Score=152.01  Aligned_cols=156  Identities=12%  Similarity=0.054  Sum_probs=102.5

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhc--Ccccc------------------------------ccccceeeeeEEEEEEC
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVG--NEQER------------------------------SLQMAGLNLINKTLMVQ  143 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~  143 (283)
                      ....++|+++|..++|||||+ +++.  +....                              .....+.+..  ...+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEc
Confidence            345799999999999999999 9975  21110                              0112233333  33344


Q ss_pred             CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHH--HHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335          144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIV--GWYSEARKWNQTAIPILIGTKFDDFVRLPPD  221 (283)
Q Consensus       144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~  221 (283)
                      ...+.+.+|||+|++.|.......+..+|++++|+|+++.+++....  .++. +.......+.|||+||+|+... .++
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~~~iIVviNK~Dl~~~-~~~  159 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGINQLIVAINKMDSVNY-DEE  159 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCCCeEEEEEEChhccCc-cHH
Confidence            44578899999999988666666678999999999999886432211  1111 2222223345789999997210 111


Q ss_pred             cccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023335          222 LQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF  256 (283)
Q Consensus       222 ~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf  256 (283)
                      ......++++++++..+     ++++++||++|.|+++.+
T Consensus       160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            11233567778887776     568999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10218 GTP-binding protein; Provisional

Probab=99.70  E-value=3.5e-16  Score=149.90  Aligned_cols=159  Identities=15%  Similarity=0.146  Sum_probs=115.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc--Cccccc-------------cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  163 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~--~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  163 (283)
                      -.+|+|+|..++|||||+ +++.  +.+...             ..+.|.++..+...++...+.+++|||+|+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            358999999999999999 9986  333321             124567777777777777789999999999999999


Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------  236 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-------  236 (283)
                      +..+++.+|++|+|+|+++....+. ..++..+..  .+.|+|++.||+|+.    ........+++..+...       
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~--~gip~IVviNKiD~~----~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA--YGLKPIVVINKVDRP----GARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH--cCCCEEEEEECcCCC----CCchhHHHHHHHHHHhccCccccc
Confidence            9999999999999999987543322 333333333  245678999999962    22222334444444322       


Q ss_pred             cCCcEEEEcCCCCc----------CHHHHHHHHHHHHhC
Q 023335          237 MKATLFFSSATHNI----------NVNKIFKFIMAKLFN  265 (283)
Q Consensus       237 ~~~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~  265 (283)
                      ..++++.+||++|.          |+..+|+.|++.+..
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence            34678999999998          588999988887753

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.70  E-value=3e-16  Score=149.93  Aligned_cols=157  Identities=13%  Similarity=0.124  Sum_probs=100.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccc-----cceeeeeEEEEE------------ECCeEEEEEEEeCCCCCCcc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-----MAGLNLINKTLM------------VQGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-----t~~~~~~~~~~~------------~~~~~~~l~i~Dt~G~~~~~  161 (283)
                      ..-|+++|.+++|||||+ ++.+..+....+     +.|..+......            ++.....+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            346999999999999999 999887763222     233333221110            00111238899999999999


Q ss_pred             cchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-----------ccchH
Q 023335          162 DHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-----------QWTIA  227 (283)
Q Consensus       162 ~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-----------~~~~~  227 (283)
                      .++..+++.+|++++|||+++   +.+++.+..+    +.  .+.|.|+++||+|+........           ...+.
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            999999999999999999987   4555554322    22  2456689999999742111100           00000


Q ss_pred             H--------HHHHHHH------------Hc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          228 T--------QARAYAK------------AM--KATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       228 ~--------~~~~~~~------------~~--~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      .        ...++++            .+  .++++++||++|+|+++++.++...
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence            0        0111121            11  2578999999999999999988653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.70  E-value=5.8e-17  Score=134.44  Aligned_cols=158  Identities=13%  Similarity=0.150  Sum_probs=104.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cc-------------c---ccceeeeeEEEEEEC--CeEEEEEEEeCCCCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RS-------------L---QMAGLNLINKTLMVQ--GARIAFSIWDVGGDSR  159 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~-------------~---~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~  159 (283)
                      .++|+++|..++|||||+ +++...-. ..             .   ...+.........+.  .....+.++||||+..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            578999999999999999 88754321 00             0   011222222222232  4456789999999999


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHH-HHHHHcC
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR-AYAKAMK  238 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~-~~~~~~~  238 (283)
                      |.......++.+|++|+|+|+.+.-.... ...+..+...  +.|.|+|.||+|+   . ........++.. .+.+..+
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~--~~p~ivvlNK~D~---~-~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL--GIPIIVVLNKMDL---I-EKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT--T-SEEEEEETCTS---S-HHHHHHHHHHHHHHHHHHTT
T ss_pred             eeecccceecccccceeeeeccccccccc-cccccccccc--ccceEEeeeeccc---h-hhhHHHHHHHHHHHhccccc
Confidence            88877778899999999999987644332 2333334332  3457899999996   2 111222233333 4545443


Q ss_pred             ------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          239 ------ATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       239 ------~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                            ++++.+||++|.|++++++.+.+.+.
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                  46899999999999999999988763

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.69  E-value=8.9e-16  Score=122.74  Aligned_cols=155  Identities=17%  Similarity=0.185  Sum_probs=114.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccc---------ccc----ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE---------RSL----QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~---------~~~----~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  161 (283)
                      ......||+|+|+.++||||++ ++......         +..    .|+..++...  .+++ ...+++++||||++|+
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~~~-~~~v~LfgtPGq~RF~   82 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--ELDE-DTGVHLFGTPGQERFK   82 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EEcC-cceEEEecCCCcHHHH
Confidence            3456889999999999999999 88766531         111    1334454433  3332 3457889999999999


Q ss_pred             cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH--cCC
Q 023335          162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA--MKA  239 (283)
Q Consensus       162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~--~~~  239 (283)
                      -++..+++++.+.|+++|.+....+ .....++.+...++ .|.+|.+||.||+...+       .++++++.+.  ...
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~p-------pe~i~e~l~~~~~~~  153 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-IPVVVAINKQDLFDALP-------PEKIREALKLELLSV  153 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-CCEEEEeeccccCCCCC-------HHHHHHHHHhccCCC
Confidence            9999999999999999999999988 44555665555443 44468899999854433       3334444443  378


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHH
Q 023335          240 TLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      +.++++|..+++..+.++.+...
T Consensus       154 ~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         154 PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ceeeeecccchhHHHHHHHHHhh
Confidence            99999999999999998888776

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.69  E-value=7.4e-16  Score=139.42  Aligned_cols=147  Identities=19%  Similarity=0.221  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc---------cchhhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIAC  168 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~  168 (283)
                      ..|+++|.||||||||. |+++.+..  +++|.+.-|.......+.+..  +.+.||+|-+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999 99999877  888866666666677777766  7889999977533         1234467


Q ss_pred             ccCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335          169 KDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS  245 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~S  245 (283)
                      ..||++|||+|....-+-+  .+.+|+.     ..++|.|||+||+|-    .     ..++...+|. .+|+ ..+.+|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~----~-----~~e~~~~efy-slG~g~~~~IS  146 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDN----L-----KAEELAYEFY-SLGFGEPVPIS  146 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccC----c-----hhhhhHHHHH-hcCCCCceEee
Confidence            8999999999987643322  2233433     235678999999993    1     1123333333 3455 688899


Q ss_pred             CCCCcCHHHHHHHHHHHHh
Q 023335          246 ATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~  264 (283)
                      |.+|.|+.++++.+++.+.
T Consensus       147 A~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         147 AEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             hhhccCHHHHHHHHHhhcC
Confidence            9999999999999999984

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.68  E-value=2.5e-16  Score=145.51  Aligned_cols=162  Identities=14%  Similarity=0.164  Sum_probs=102.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCcccc---ccc---cceeeeeE----------------EEEEECC------eEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQER---SLQ---MAGLNLIN----------------KTLMVQG------ARIAF  149 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~---~~~---t~~~~~~~----------------~~~~~~~------~~~~l  149 (283)
                      ..++|+++|..++|||||+ ++.+.....   ...   |....+..                .....++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            4789999999999999999 886532211   100   11111100                0000011      13578


Q ss_pred             EEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHH
Q 023335          150 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ  229 (283)
Q Consensus       150 ~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~  229 (283)
                      .+||+||+++|.......+..+|++++|+|+++..........+..+.. ....++|+|+||+|+   .+.+......++
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl---~~~~~~~~~~~~  158 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDL---VSKEKALENYEE  158 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEcccc---CCHHHHHHHHHH
Confidence            9999999999877777777889999999999864311111222222222 222345789999997   222111122345


Q ss_pred             HHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          230 ARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       230 ~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      +.++.+..   +++++++||++|+|+++++++|...+.
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            55555543   578999999999999999999988664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04167 Snu114p Snu114p subfamily

Probab=99.68  E-value=2.1e-16  Score=133.70  Aligned_cols=149  Identities=19%  Similarity=0.322  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccc-----------c-------ccceeeeeEEEEEE-----CCeEEEEEEEeCCCC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERS-----------L-------QMAGLNLINKTLMV-----QGARIAFSIWDVGGD  157 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~-----------~-------~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~  157 (283)
                      +|+++|..++|||||+ +++.......           +       ...|.++....+.+     ++..+.+.+|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999 9986543311           0       11233332222222     356789999999999


Q ss_pred             CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCC---CCCCCc----ccchHHHH
Q 023335          158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV---RLPPDL----QWTIATQA  230 (283)
Q Consensus       158 ~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~---~l~~~~----~~~~~~~~  230 (283)
                      +.|......++..+|++++|+|+++..++.. ..|+..+..  ...|.++|+||+|+..   .++...    -....+++
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~  158 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV  158 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence            9998888889999999999999988776643 345554433  2356689999999631   011111    11123445


Q ss_pred             HHHHHHcCC-------c----EEEEcCCCCcCHH
Q 023335          231 RAYAKAMKA-------T----LFFSSATHNINVN  253 (283)
Q Consensus       231 ~~~~~~~~~-------~----~~e~Sa~~~~~v~  253 (283)
                      ..+++.++.       +    +++.|++.+.++.
T Consensus       159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            555655543       2    6688999887765

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.68  E-value=4.4e-16  Score=149.25  Aligned_cols=158  Identities=15%  Similarity=0.190  Sum_probs=114.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc--Ccccccc-------------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchh
Q 023335          102 KISLLGDCQIGKTSFV-KYVG--NEQERSL-------------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP  165 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~--~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~  165 (283)
                      +|+|+|..++|||||+ +++.  +.+....             ...|.++..+...+....+.+++|||||+..|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            6999999999999999 9985  3332110             1235555555555555567899999999999988888


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-------HcC
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AMK  238 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-------~~~  238 (283)
                      .+++.+|++++|+|+++. .......|+..+...  +.|+|+|+||+|+    .......+.+++.++..       ...
T Consensus        83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~--~ip~IVviNKiD~----~~a~~~~v~~ei~~l~~~~g~~~e~l~  155 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL--GLKPIVVINKIDR----PSARPDEVVDEVFDLFAELGADDEQLD  155 (594)
T ss_pred             HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC--CCCEEEEEECCCC----CCcCHHHHHHHHHHHHHhhcccccccc
Confidence            999999999999999864 234445666666553  3566899999996    22222223444555443       235


Q ss_pred             CcEEEEcCCCCc----------CHHHHHHHHHHHHhCC
Q 023335          239 ATLFFSSATHNI----------NVNKIFKFIMAKLFNL  266 (283)
Q Consensus       239 ~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~~  266 (283)
                      ++++++||++|.          |++.+|+.+++.+...
T Consensus       156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            678999999995          7999999999887543

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.68  E-value=2.1e-16  Score=133.15  Aligned_cols=149  Identities=15%  Similarity=0.078  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-c--------------------------ccc---cceeeeeEEEEEECCeEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-R--------------------------SLQ---MAGLNLINKTLMVQGARIAFS  150 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~--------------------------~~~---t~~~~~~~~~~~~~~~~~~l~  150 (283)
                      +|+++|.+|+|||||+ +++...-. .                          ..+   ..|.........+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            5899999999999999 88643211 1                          000   012222222222222345678


Q ss_pred             EEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc--ccchHH
Q 023335          151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL--QWTIAT  228 (283)
Q Consensus       151 i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~--~~~~~~  228 (283)
                      +|||||+++|.......++.+|++|+|+|+++...-+. ..+...+.. ....+.|+|+||+|+.   ....  ......
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~-~~~~~iIvviNK~D~~---~~~~~~~~~i~~  155 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL-LGIRHVVVAVNKMDLV---DYSEEVFEEIVA  155 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH-cCCCcEEEEEEchhcc---cCCHHHHHHHHH
Confidence            99999998876555667899999999999987532111 122222222 2222346789999962   1111  112345


Q ss_pred             HHHHHHHHcCC---cEEEEcCCCCcCHHHH
Q 023335          229 QARAYAKAMKA---TLFFSSATHNINVNKI  255 (283)
Q Consensus       229 ~~~~~~~~~~~---~~~e~Sa~~~~~v~~l  255 (283)
                      +++++++.++.   +++.+||++|.|+++.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            66677777774   4889999999999854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.66  E-value=8.3e-16  Score=142.02  Aligned_cols=160  Identities=15%  Similarity=0.181  Sum_probs=99.2

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc---cc-cc--cceeeeeEEEE----------------EEC--C----eEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE---RS-LQ--MAGLNLINKTL----------------MVQ--G----ARI  147 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~---~~-~~--t~~~~~~~~~~----------------~~~--~----~~~  147 (283)
                      ....++|+++|..++|||||+ ++.+....   +. ..  |....+....+                .++  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            345799999999999999999 88553111   11 01  21111110000                011  1    135


Q ss_pred             EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh----hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc
Q 023335          148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ  223 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~  223 (283)
                      .+.+|||||++.|..........+|++++|+|+++.    ++.+.+.    .+.. ....++++|+||+|+   .+.+..
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~-~~i~~iiVVlNK~Dl---~~~~~~  157 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI-IGIKNIVIVQNKIDL---VSKERA  157 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH-cCCCcEEEEEEeecc---ccchhH
Confidence            789999999988755444445567999999999964    3333322    2222 222345899999997   222211


Q ss_pred             cchHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          224 WTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       224 ~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ....+++..+++..   +.+++++||++|+|++++++.|...+.
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            11234555555442   568999999999999999999988764

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.66  E-value=1.5e-15  Score=130.22  Aligned_cols=182  Identities=14%  Similarity=0.221  Sum_probs=116.6

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCc--------
Q 023335           93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------  160 (283)
Q Consensus        93 ~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------  160 (283)
                      +..+..+.+.|+|||.||||||||. .+++.+..  .... |+.-..   .-.+.....++.|+||||.-.-        
T Consensus        65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i---lgi~ts~eTQlvf~DTPGlvs~~~~r~~~l  141 (379)
T KOG1423|consen   65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI---LGIITSGETQLVFYDTPGLVSKKMHRRHHL  141 (379)
T ss_pred             CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee---eEEEecCceEEEEecCCcccccchhhhHHH
Confidence            4466677899999999999999999 99998866  2222 433222   2223344567899999994321        


Q ss_pred             ----ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC----------CCCCcccc-
Q 023335          161 ----FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR----------LPPDLQWT-  225 (283)
Q Consensus       161 ----~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~----------l~~~~~~~-  225 (283)
                          ..-....+..||++++|+|+++....-+ ...+..++.+. ..|-|+|.||.|+..+          +.+..... 
T Consensus       142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~  219 (379)
T KOG1423|consen  142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL  219 (379)
T ss_pred             HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence                1112345679999999999997322211 13445555543 4455999999996211          00100000 


Q ss_pred             hHHHHHHHHHH---------cCC----cEEEEcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335          226 IATQARAYAKA---------MKA----TLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP  279 (283)
Q Consensus       226 ~~~~~~~~~~~---------~~~----~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  279 (283)
                      ..+..+++...         .|.    .+|.+||++|+||+++-++|+..+...+|+.......+++
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s  286 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEES  286 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccC
Confidence            01111111111         112    2678999999999999999999999999999888776654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.66  E-value=1.5e-15  Score=137.84  Aligned_cols=151  Identities=16%  Similarity=0.182  Sum_probs=110.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~  168 (283)
                      -+|++++|.||||||||+ .+++....  .+.+.|.-|.....+.++|..  +.+.||+|..+-.+.        ....+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            589999999999999999 99988766  888877788888888898855  677999997654433        23457


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      ++||.+++|+|.+...+-++. ..+.   ....+.+.++|.||.||.   +...       ...+.-..+.+.+.+||++
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~---~~~~-------~~~~~~~~~~~~i~iSa~t  360 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLV---SKIE-------LESEKLANGDAIISISAKT  360 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcc---cccc-------cchhhccCCCceEEEEecC
Confidence            899999999999986332221 1122   233456778999999972   1111       1111112244689999999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023335          249 NINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~  266 (283)
                      |+|++++.+.|.+.+...
T Consensus       361 ~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         361 GEGLDALREAIKQLFGKG  378 (454)
T ss_pred             ccCHHHHHHHHHHHHhhc
Confidence            999999999998888665

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.66  E-value=1.6e-15  Score=146.14  Aligned_cols=154  Identities=14%  Similarity=0.113  Sum_probs=102.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc---cc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE---QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~---~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      -|.++|..++|||||+ ++.+..   +. +.......+.....+...+ ...+.+|||||+++|.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            4789999999999999 998532   22 2212222332222232222 2347899999999987666667889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcC---CcEEEEcCCCC
Q 023335          177 MFDLTS---RCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK---ATLFFSSATHN  249 (283)
Q Consensus       177 v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~---~~~~e~Sa~~~  249 (283)
                      |+|+++   +.+.+.+    ..+.. . ..+. |||+||+|+   .+++......+++.++.+..+   .+++++||++|
T Consensus        81 VVda~eg~~~qT~ehl----~il~~-l-gi~~iIVVlNKiDl---v~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG  151 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AILQL-T-GNPMLTVALTKADR---VDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG  151 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHHHH-c-CCCeEEEEEECCcc---CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence            999987   3343333    22222 2 2343 699999996   222222223556666666554   67999999999


Q ss_pred             cCHHHHHHHHHHHHhC
Q 023335          250 INVNKIFKFIMAKLFN  265 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~  265 (283)
                      +|++++++.|.+....
T Consensus       152 ~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        152 RGIDALREHLLQLPER  167 (614)
T ss_pred             CCCHHHHHHHHHhhcc
Confidence            9999999999875533

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.66  E-value=1.8e-15  Score=128.45  Aligned_cols=169  Identities=19%  Similarity=0.225  Sum_probs=112.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcccccccccee--eeeEEEEEECCeEEEEEEEeCCCCCCccc-----chhhhcccCcE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGL--NLINKTLMVQGARIAFSIWDVGGDSRSFD-----HVPIACKDAVA  173 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----~~~~~~~~ad~  173 (283)
                      ||+++|..++||||+. -+..+-........+.  +.....+... ..+.+++||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            8999999999999999 4444332222222222  2222222222 346799999999986543     35667899999


Q ss_pred             EEEEEECCChhh---HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch----HHHHHHHHHHcC---CcEEE
Q 023335          174 ILFMFDLTSRCT---LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKAMK---ATLFF  243 (283)
Q Consensus       174 iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~----~~~~~~~~~~~~---~~~~e  243 (283)
                      +|+|+|+.+.+-   +..+...+..+.+++++....+..+|+|+   ++++.+...    .+.+.+.+...+   +.++.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~---l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~  156 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDL---LSEDEREEIFRDIQQRIRDELEDLGIEDITFFL  156 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCC---S-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc---CCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence            999999985543   34445677778888988888899999998   555544443    344555556666   77888


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCccccccccC
Q 023335          244 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLT  275 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~  275 (283)
                      ||..+ +.+-+.|..+++.++.+....++.++
T Consensus       157 TSI~D-~Sly~A~S~Ivq~LiP~~~~le~~L~  187 (232)
T PF04670_consen  157 TSIWD-ESLYEAWSKIVQKLIPNLSTLENLLN  187 (232)
T ss_dssp             E-TTS-THHHHHHHHHHHTTSTTHCCCCCCCC
T ss_pred             ccCcC-cHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            99987 57999999999999988777776654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.65  E-value=2.3e-15  Score=144.25  Aligned_cols=157  Identities=12%  Similarity=0.139  Sum_probs=99.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccc-----cceeeeeEEEEE--ECCeEE----------EEEEEeCCCCCCc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-----MAGLNLINKTLM--VQGARI----------AFSIWDVGGDSRS  160 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-----t~~~~~~~~~~~--~~~~~~----------~l~i~Dt~G~~~~  160 (283)
                      +...|+++|..++|||||+ ++.+.......+     +.|..+......  ..+..+          .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            4567999999999999999 997665442222     333333221110  011111          2689999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-----------cch
Q 023335          161 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-----------WTI  226 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-----------~~~  226 (283)
                      ..++...++.+|++++|+|+++   +++++.+..+    ..  .+.|.++++||+|+.........           ...
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v  158 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV  158 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence            9888888899999999999997   5666655322    22  24566899999997311110000           000


Q ss_pred             HH-------HHHHHHHHc---------------CCcEEEEcCCCCcCHHHHHHHHHH
Q 023335          227 AT-------QARAYAKAM---------------KATLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       227 ~~-------~~~~~~~~~---------------~~~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      .+       +...+....               .++++++||++|+|++++++.+..
T Consensus       159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            00       111111211               256899999999999999988764

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.62  E-value=5.2e-15  Score=127.02  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--------------ccc---ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  163 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--------------~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  163 (283)
                      +|+++|..|+|||||+ +++...-.              +..   ...+..+......+.....++.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4899999999999999 98753110              101   12233333334444445577899999999999888


Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      ...+++.+|++++|+|.++.... ....|+..+...  +.|.++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECcccc
Confidence            88899999999999999986543 334555555443  45668999999973

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.59  E-value=1.3e-14  Score=113.51  Aligned_cols=134  Identities=21%  Similarity=0.269  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhcccCcEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACKDAVAILF  176 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~~~ad~iil  176 (283)
                      ||+++|..|+|||||+ ++.+.+. .+..|..+.+.       +     .++||||.--    |....-....+||.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            7999999999999999 7766443 33334333332       1     3479998432    11111123369999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~l  255 (283)
                      +.|.+++.+.-. ..+..     ....|+|=|.||+|+    ..  .....+.++++.+..|+ ..|++|+.+|+||++|
T Consensus        70 l~dat~~~~~~p-P~fa~-----~f~~pvIGVITK~Dl----~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL  137 (143)
T PF10662_consen   70 LQDATEPRSVFP-PGFAS-----MFNKPVIGVITKIDL----PS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEEL  137 (143)
T ss_pred             EecCCCCCccCC-chhhc-----ccCCCEEEEEECccC----cc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHH
Confidence            999998754211 01111     124577889999996    21  12335677788888888 5788999999999999


Q ss_pred             HHHHH
Q 023335          256 FKFIM  260 (283)
Q Consensus       256 f~~l~  260 (283)
                      .++|-
T Consensus       138 ~~~L~  142 (143)
T PF10662_consen  138 KDYLE  142 (143)
T ss_pred             HHHHh
Confidence            98874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.59  E-value=1.8e-14  Score=136.05  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=119.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------cchhhhc--c
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIAC--K  169 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~--~  169 (283)
                      ..+|+++|+||||||||. ++++.... .++|...++.....+...+..  +++.|.||.-...      ...+.|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            567999999999999999 99998877 999988888877777777766  6779999965432      2344554  3


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  249 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  249 (283)
                      +.|++|-|.|.+|.+-     +.+-.++-..-+.|.|++.|++|.      .+++-+.-+..++.+..|++.+++||++|
T Consensus        81 ~~D~ivnVvDAtnLeR-----nLyltlQLlE~g~p~ilaLNm~D~------A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g  149 (653)
T COG0370          81 KPDLIVNVVDATNLER-----NLYLTLQLLELGIPMILALNMIDE------AKKRGIRIDIEKLSKLLGVPVVPTVAKRG  149 (653)
T ss_pred             CCCEEEEEcccchHHH-----HHHHHHHHHHcCCCeEEEeccHhh------HHhcCCcccHHHHHHHhCCCEEEEEeecC
Confidence            6699999999998652     222222222235567899999995      44555677788899999999999999999


Q ss_pred             cCHHHHHHHHHHHHhCCc
Q 023335          250 INVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~~~  267 (283)
                      .|++++.+.+.+....+.
T Consensus       150 ~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         150 EGLEELKRAIIELAESKT  167 (653)
T ss_pred             CCHHHHHHHHHHhccccc
Confidence            999999999987665544

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.59  E-value=3.4e-14  Score=126.56  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=57.6

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEE---------------------ECC-eEEEEEEEeCCCC-
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLM---------------------VQG-ARIAFSIWDVGGD-  157 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~---------------------~~~-~~~~l~i~Dt~G~-  157 (283)
                      |.++|.+|||||||+ ++++..+. ..+|.+..+.......                     +++ ..+.+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999 99988866 5565333222222222                     223 3478999999997 


Q ss_pred             ---CCcccchhhh---cccCcEEEEEEECC
Q 023335          158 ---SRSFDHVPIA---CKDAVAILFMFDLT  181 (283)
Q Consensus       158 ---~~~~~~~~~~---~~~ad~iilv~D~~  181 (283)
                         +++..+...|   +++||++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               5566666665   89999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.58  E-value=5.8e-15  Score=125.39  Aligned_cols=150  Identities=14%  Similarity=0.087  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcc---------------------------ccccc---cceeeeeEEEEEECCeEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQ---------------------------ERSLQ---MAGLNLINKTLMVQGARIAFS  150 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~---------------------------~~~~~---t~~~~~~~~~~~~~~~~~~l~  150 (283)
                      +|+++|..++|||||+ +++...-                           .+..+   ..|.........+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            4899999999999999 8853210                           00000   112222222233333456789


Q ss_pred             EEeCCCCCCcccchhhhcccCcEEEEEEECCChh-------hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC-CCCCc
Q 023335          151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-------TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR-LPPDL  222 (283)
Q Consensus       151 i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~-------s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~-l~~~~  222 (283)
                      +|||+|+..|.......+..+|++|+|+|+++..       ..+....| .... .....++|+++||+|+... .....
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLAR-TLGVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHH-HcCCCeEEEEEEccccccccccHHH
Confidence            9999998877655556678899999999998842       11122222 2222 2222445789999997210 00111


Q ss_pred             ccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHH
Q 023335          223 QWTIATQARAYAKAMK-----ATLFFSSATHNINVN  253 (283)
Q Consensus       223 ~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~  253 (283)
                      .....+++..+.+..+     ++++++||++|+|++
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1122444554555554     568999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.58  E-value=3.8e-14  Score=118.16  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=96.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  163 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  163 (283)
                      .++|+++|..++|||||+ +++.....            +..+   ..|.........+......+.+.||||...|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            578999999999999999 98753100            0000   2233444444445445567889999999887766


Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC---
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK---  238 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~---  238 (283)
                      ....+..+|++++|+|++..-.-+ ....+..+...  +.| .|++.||+|+   ..... .....+++.++.+..+   
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~---~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADM---VDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCC---CCcHHHHHHHHHHHHHHHHHhcccc
Confidence            677788999999999997643222 22333334332  234 4688999997   22221 1223456777766654   


Q ss_pred             --CcEEEEcCCCCcCHH
Q 023335          239 --ATLFFSSATHNINVN  253 (283)
Q Consensus       239 --~~~~e~Sa~~~~~v~  253 (283)
                        ++++.+||++|.|+.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence              578999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.58  E-value=3.8e-14  Score=118.41  Aligned_cols=160  Identities=14%  Similarity=0.143  Sum_probs=95.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-ccccccee-eee--EEEEEECCeEEEEEEEeCCCCCCcccchhhh-----cc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGL-NLI--NKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----CK  169 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~-~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-----~~  169 (283)
                      ++||+++|.+|||||||+ .+++..+. ....+++. ...  ...+... ....+.+|||+|..........|     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999 99886554 22223231 111  1111111 12358899999976543333333     57


Q ss_pred             cCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCC------cccchHHHHHHH----HHHcC
Q 023335          170 DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD------LQWTIATQARAY----AKAMK  238 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~------~~~~~~~~~~~~----~~~~~  238 (283)
                      ++|+++++.|    .+|... ..|++.+...  ..+.++|+||+|+...-...      .+....++.++.    ....+
T Consensus        80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8899888843    224343 3566766664  35668999999972100000      011112222222    22222


Q ss_pred             ---CcEEEEcCC--CCcCHHHHHHHHHHHHhCC
Q 023335          239 ---ATLFFSSAT--HNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       239 ---~~~~e~Sa~--~~~~v~~lf~~l~~~i~~~  266 (283)
                         .++|.+|+.  .+.|+..+.+.++..+.+.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence               267889998  5789999999999888653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01850 CDC_Septin CDC/Septin

Probab=99.57  E-value=2.2e-14  Score=125.74  Aligned_cols=142  Identities=12%  Similarity=0.208  Sum_probs=94.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-c----------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc-----
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-----  162 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----  162 (283)
                      .++|+++|.+|+|||||+ ++++..+. .          ..+|++.+.....+..+|..+.+.+|||+|-..+..     
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            689999999999999999 99988765 2          123555666666677788889999999999432211     


Q ss_pred             ---------------------chhhhcc--cCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335          163 ---------------------HVPIACK--DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRL  218 (283)
Q Consensus       163 ---------------------~~~~~~~--~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l  218 (283)
                                           .....+.  ++|+++++++.+.. .+... ...++.+.   ...+.|+|+||+|+   +
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~---l  156 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADT---L  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCc---C
Confidence                                 1113333  45667777766542 12121 23333333   24566899999997   4


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          219 PPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      .........+.+++.++.+++.+|......
T Consensus       157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            433333457778888999999998766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.57  E-value=2.9e-14  Score=121.31  Aligned_cols=153  Identities=11%  Similarity=0.158  Sum_probs=93.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccc------------------------cceeeeeEEEEE-------------EC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQ------------------------MAGLNLINKTLM-------------VQ  143 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~------------------------t~~~~~~~~~~~-------------~~  143 (283)
                      ||+++|+.++|||||+ +|..+.|.....                        ..|.+...+.+.             +.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999 999776642110                        011111000000             11


Q ss_pred             CeEEEEEEEeCCCCCCcccchhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335          144 GARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  221 (283)
Q Consensus       144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~  221 (283)
                      .....+.+.||||+++|.......+.  .+|++++|+|++....-. ...++..+...  ..|+++|.||+|+   .+..
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~---~~~~  154 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDL---APAN  154 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccc---cCHH
Confidence            11346788999999988654444443  689999999987654322 23344444332  3466899999996   3322


Q ss_pred             cccchHHHHHHHHHH--------------------------cCCcEEEEcCCCCcCHHHHHHHHH
Q 023335          222 LQWTIATQARAYAKA--------------------------MKATLFFSSATHNINVNKIFKFIM  260 (283)
Q Consensus       222 ~~~~~~~~~~~~~~~--------------------------~~~~~~e~Sa~~~~~v~~lf~~l~  260 (283)
                      ......+++.++.+.                          ..+++|.+||.+|+|++++...|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            222223334333331                          123789999999999999887764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.55  E-value=8.3e-14  Score=118.19  Aligned_cols=110  Identities=18%  Similarity=0.245  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--cc----------c---ccceeeeeE--EEEEEC--------CeEEEEEEEeCC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RS----------L---QMAGLNLIN--KTLMVQ--------GARIAFSIWDVG  155 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~----------~---~t~~~~~~~--~~~~~~--------~~~~~l~i~Dt~  155 (283)
                      +|+++|..++|||||+ +++...-.  ..          .   ...|.....  ..+.++        +..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999 98743211  00          0   011222211  122333        447889999999


Q ss_pred             CCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       156 G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      |++.|......+++.+|++++|||+++..+.+....|. ....  ...|+|+|+||+|+
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~--~~~p~ilviNKiD~  137 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK--ERVKPVLVINKIDR  137 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCCc
Confidence            99999999999999999999999999876665433322 2222  24567899999996

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.55  E-value=7.2e-14  Score=128.75  Aligned_cols=148  Identities=11%  Similarity=0.093  Sum_probs=95.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCc-------c-----cccc---ccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNE-------Q-----ERSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~-------~-----~~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ....++|+++|..++|||||+ ++++..       +     .+..   ...|.......+.++.....+.+|||||+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            345799999999999999999 997420       0     0000   01233343444555555667899999999988


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceE-EEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  238 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~  238 (283)
                      ..........+|++++|+|+++...-+. ...+..+...  ..|++ ++.||+|+   .+.+. .....++++++++.++
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl---~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDM---VDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEeccc---CCHHHHHHHHHHHHHHHHHhcC
Confidence            6555555678899999999987422222 2223333322  34554 68999997   22211 1122456777777775


Q ss_pred             -----CcEEEEcCCCCc
Q 023335          239 -----ATLFFSSATHNI  250 (283)
Q Consensus       239 -----~~~~e~Sa~~~~  250 (283)
                           ++++++||.+|.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.54  E-value=9.8e-14  Score=127.86  Aligned_cols=161  Identities=11%  Similarity=0.115  Sum_probs=103.4

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcC-------ccc-----ccc---ccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGN-------EQE-----RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~-------~~~-----~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ....++|+++|..++|||||+ ++++.       .+.     +..   ...|.........+......+.++||||+++|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            345799999999999999999 99852       110     000   02244333334445444566889999999887


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceE-EEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  238 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~  238 (283)
                      .......+..+|++++|+|+++...-+ ...++..+...  ..|.+ ++.||+|+   ...+. .....+++..+.+.++
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~--gi~~iivvvNK~Dl---~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDM---VDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEecCC---cchHHHHHHHHHHHHHHHHHcC
Confidence            665556678999999999998743222 22333333322  34545 67999997   22111 1223456777777664


Q ss_pred             -----CcEEEEcCCCCc----------CHHHHHHHHHHHH
Q 023335          239 -----ATLFFSSATHNI----------NVNKIFKFIMAKL  263 (283)
Q Consensus       239 -----~~~~e~Sa~~~~----------~v~~lf~~l~~~i  263 (283)
                           ++++++||++|.          ++.++++.|.+.+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence                 578999999984          5677777776654

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.53  E-value=2.1e-13  Score=118.57  Aligned_cols=158  Identities=18%  Similarity=0.158  Sum_probs=108.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC-----cccchh---hhcc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-----SFDHVP---IACK  169 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~---~~~~  169 (283)
                      ...|+|.|.||||||||+ ++.+.+.. .+||.|.-......+..++  ..+|+.||||.-.     .+.+-.   ..++
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            457999999999999999 99999988 9999555444444444443  5688999999422     111111   1222


Q ss_pred             -cCcEEEEEEECCChh--hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335          170 -DAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS  245 (283)
Q Consensus       170 -~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~S  245 (283)
                       =+++|+|+||.+..+  +.+.-..++++++.... .|.++|.||.|+    ..   ....+++.......+. ....++
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~----~~---~e~~~~~~~~~~~~~~~~~~~~~  317 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDI----AD---EEKLEEIEASVLEEGGEEPLKIS  317 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccc----cc---hhHHHHHHHHHHhhcccccccee
Confidence             357899999998654  56776788999988765 677899999995    11   1112333333333343 467788


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCc
Q 023335          246 ATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +..+.+++.+-+.+.....+.-
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~~~  339 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALEPL  339 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhchh
Confidence            8888888888877777765543

>PRK12736 elongation factor Tu; Reviewed

Probab=99.53  E-value=1.1e-13  Score=127.56  Aligned_cols=162  Identities=10%  Similarity=0.093  Sum_probs=104.2

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc------------c--c-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE------------R--S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~------------~--~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ....++|+++|..++|||||+ ++++....            +  . ....|.........+......+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            445799999999999999999 98752110            0  0 002233333344445445567789999999887


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCcc-cchHHHHHHHHHHcC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMK  238 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~~~~~  238 (283)
                      .......+..+|++++|+|+++...-+. ..++..+...  ..| .|++.||+|+   ...+.. ....+++.++.+..+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~---~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDL---VDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCC---cchHHHHHHHHHHHHHHHHHhC
Confidence            6555555678999999999986422121 2233333332  345 3688999997   221111 122456677766665


Q ss_pred             -----CcEEEEcCCCCc--------CHHHHHHHHHHHHh
Q 023335          239 -----ATLFFSSATHNI--------NVNKIFKFIMAKLF  264 (283)
Q Consensus       239 -----~~~~e~Sa~~~~--------~v~~lf~~l~~~i~  264 (283)
                           ++++.+||++|.        ++.++++.+.+.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                 478999999983        57788877776654

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.51  E-value=1.3e-14  Score=111.41  Aligned_cols=111  Identities=15%  Similarity=0.092  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcccc-cc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQER-SL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +||+++|+.|||||+|+ ++....+.. +. +|.+                           +..+...+++.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            58999999999999999 998777762 22 3332                           333445567889999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |+.++.++++.+  |...+...++..++ ++++||.|+.    ...         .++++.+..++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~----~~~---------~~~~~~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLE----EER---------QVATEEGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhH----hhC---------cCCHHHHHHHHHHhCCCcchhh
Confidence            999999999876  88887766544444 6899999951    111         1222223346678899999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.50  E-value=5.8e-13  Score=122.10  Aligned_cols=81  Identities=19%  Similarity=0.225  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEE---------------------C-CeEEEEEEEeCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV---------------------Q-GARIAFSIWDVGG  156 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~---------------------~-~~~~~l~i~Dt~G  156 (283)
                      +||.++|.||||||||+ ++++..+. ..++.++.+.....+.+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999 99988776 56663333222222221                     1 1236789999999


Q ss_pred             C----CCcccchhhh---cccCcEEEEEEECC
Q 023335          157 D----SRSFDHVPIA---CKDAVAILFMFDLT  181 (283)
Q Consensus       157 ~----~~~~~~~~~~---~~~ad~iilv~D~~  181 (283)
                      .    +.+..+...|   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    4455566666   78999999999997

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.48  E-value=2.9e-13  Score=126.21  Aligned_cols=154  Identities=14%  Similarity=0.122  Sum_probs=101.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcc--c-------------------------cccc---cceeeeeEEEEEECCeE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ--E-------------------------RSLQ---MAGLNLINKTLMVQGAR  146 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~--~-------------------------~~~~---t~~~~~~~~~~~~~~~~  146 (283)
                      ...++|+++|..++|||||+ +++...-  .                         +..+   ..|.........+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            45789999999999999999 8864210  0                         0000   11333333344455556


Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHH-------HHHHHHHHHHhHCCCCce-EEEeecCCCCC-C
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN-------SIVGWYSEARKWNQTAIP-ILIGTKFDDFV-R  217 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~-------~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~-~  217 (283)
                      ..+.+.|+||+++|.......+..+|++|+|+|+++ .+|+       ...+.+..+..  ...++ |+++||+|+.. .
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATTPK  161 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCchh
Confidence            788999999999998888888999999999999987 3333       22222222222  23444 67899999620 0


Q ss_pred             CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023335          218 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK  254 (283)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~  254 (283)
                      .....-..+.++++.++++.|     ++++++||++|+|+.+
T Consensus       162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            001112234677888888776     5689999999999854

>PRK13351 elongation factor G; Reviewed

Probab=99.48  E-value=2.1e-13  Score=134.09  Aligned_cols=114  Identities=13%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCcc-------------c-cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQ-------------E-RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~-------------~-~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ...+|+|+|..++|||||+ +++...-             . +..+   ..+.........+......+++|||||+.+|
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            3579999999999999999 9974210             0 0000   1122222222223334577899999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      ......+++.+|++++|+|.++..+.+....| ..+...  +.|+++++||+|+.
T Consensus        87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~~  138 (687)
T PRK13351         87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDRV  138 (687)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCCC
Confidence            88889999999999999999988776665555 333332  45668999999974

>cd04169 RF3 RF3 subfamily

Probab=99.48  E-value=6.8e-13  Score=115.84  Aligned_cols=111  Identities=11%  Similarity=0.115  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcc--c---------------cccc----cceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQ--E---------------RSLQ----MAGLNLINKTLMVQGARIAFSIWDVGGDS  158 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~--~---------------~~~~----t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  158 (283)
                      -+|+++|.+|+|||||+ +++...-  .               ..+.    ..+.++......++...+.+++|||+|+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            46999999999999999 8874210  0               0000    11334444445555566889999999999


Q ss_pred             CcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       159 ~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      +|......+++.+|++|+|+|.++.... ....++.....  .+.|.++++||+|+
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~--~~~P~iivvNK~D~  135 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL--RGIPIITFINKLDR  135 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh--cCCCEEEEEECCcc
Confidence            8887777788999999999999875332 22344444333  24566899999996

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.48  E-value=7.9e-13  Score=108.12  Aligned_cols=153  Identities=15%  Similarity=0.196  Sum_probs=101.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCcc-ccccccceeeeeEEEEEECCeEEEEEEEeCCC----------CCCcccchhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~  166 (283)
                      ...-|+++|.+|||||||| .+++.+- .....|.|.+.....+.+++.   +.+.|.||          .+.+..+...
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            3567999999999999999 9999663 333445565555555566554   67889998          2334455666


Q ss_pred             hcc---cCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC---
Q 023335          167 ACK---DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK---  238 (283)
Q Consensus       167 ~~~---~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~---  238 (283)
                      |++   +-.++++++|+...-.-.  .+.+|+.+.     +.|++||+||+|.   ++....   .......++..+   
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DK---i~~~~~---~k~l~~v~~~l~~~~  168 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADK---LKKSER---NKQLNKVAEELKKPP  168 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEcccc---CChhHH---HHHHHHHHHHhcCCC
Confidence            664   345888999987654332  234565553     5566899999996   332211   222333333332   


Q ss_pred             -Cc--EEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          239 -AT--LFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       239 -~~--~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                       ..  ++..|+.++.|++++...|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence             22  6679999999999999998887644

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.47  E-value=1.2e-12  Score=113.46  Aligned_cols=150  Identities=18%  Similarity=0.185  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----c---cchhhhcccC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----F---DHVPIACKDA  171 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~---~~~~~~~~~a  171 (283)
                      ..|+++|.|+||||||+ ++.+.+.. ..|+.+........+.++|  .++|+.|+||.-..    +   ...-...++|
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A  141 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA  141 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence            57999999999999999 99998887 8899777777777787777  45788999974332    2   1223456899


Q ss_pred             cEEEEEEECCChhh-HHHHHHHHHH--------------------------------------------HHhHCC-----
Q 023335          172 VAILFMFDLTSRCT-LNSIVGWYSE--------------------------------------------ARKWNQ-----  201 (283)
Q Consensus       172 d~iilv~D~~~~~s-~~~~~~~~~~--------------------------------------------i~~~~~-----  201 (283)
                      |++++|.|+....+ .+.+.+.++.                                            .+-++.     
T Consensus       142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir  221 (365)
T COG1163         142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR  221 (365)
T ss_pred             CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence            99999999986554 3333222221                                            110000     


Q ss_pred             -----------------CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          202 -----------------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       202 -----------------~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                                       -.|-+.|.||.|+   ..       .++...+.+..  .++.+||+.+.|++++.+.|.+.+-
T Consensus       222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~---~~-------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         222 EDVTLDDLIDALEGNRVYKPALYVVNKIDL---PG-------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             cCCcHHHHHHHHhhcceeeeeEEEEecccc---cC-------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                             0244899999996   11       34555555554  7899999999999999999998773

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.47  E-value=2.5e-13  Score=125.57  Aligned_cols=151  Identities=16%  Similarity=0.132  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--c---------------------------ccc---cceeeeeEEEEEECCeEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--R---------------------------SLQ---MAGLNLINKTLMVQGARI  147 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~---------------------------~~~---t~~~~~~~~~~~~~~~~~  147 (283)
                      ++|+++|..++|||||+ +++...-.  .                           ..+   ..|.........+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999 88633211  0                           000   112222222333333445


Q ss_pred             EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH
Q 023335          148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  227 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~  227 (283)
                      .+.|+||||+++|.......+..+|++++|+|++....-+....| ..+... ...+.|++.||+|+... +.+......
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~-~~~~iivviNK~D~~~~-~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL-GIRHVVLAVNKMDLVDY-DEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc-CCCcEEEEEEecccccc-hHHHHHHHH
Confidence            788999999998866555678899999999998764322211112 122221 22345789999997210 011111123


Q ss_pred             HHHHHHHHHcC---CcEEEEcCCCCcCHHH
Q 023335          228 TQARAYAKAMK---ATLFFSSATHNINVNK  254 (283)
Q Consensus       228 ~~~~~~~~~~~---~~~~e~Sa~~~~~v~~  254 (283)
                      ++...+.+..+   ++++++||++|+|+++
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            44555555554   4689999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.46  E-value=2.9e-13  Score=127.12  Aligned_cols=155  Identities=12%  Similarity=0.079  Sum_probs=92.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cc-----------ccc-------------------ceeeeeEEEEEECC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RS-----------LQM-------------------AGLNLINKTLMVQG  144 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~-----------~~t-------------------~~~~~~~~~~~~~~  144 (283)
                      ...++|+++|..++|||||+ +++...-.  ..           .-+                   .|+........+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            44699999999999999999 98643211  00           000                   12222222223334


Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCccc
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW  224 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~  224 (283)
                      ....+.|+||||++.|.......+..+|++++|+|++..-.-+....| ..+.... ..+.|++.||+|+... ......
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg-~~~iIvvvNKiD~~~~-~~~~~~  181 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG-IKHLVVAVNKMDLVDY-SEEVFE  181 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC-CCceEEEEEeeccccc-hhHHHH
Confidence            456788999999988765445557999999999999764221111111 1122212 2345789999997210 011011


Q ss_pred             chHHHHHHHHHHcC----CcEEEEcCCCCcCHHHH
Q 023335          225 TIATQARAYAKAMK----ATLFFSSATHNINVNKI  255 (283)
Q Consensus       225 ~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~l  255 (283)
                      ...++...+.+..+    .+++.+||++|+|++++
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            12344445455443    67899999999999865

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.6e-12  Score=119.27  Aligned_cols=161  Identities=16%  Similarity=0.194  Sum_probs=118.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcc-----------ccccc---cceeeeeEEEEE---ECCeEEEEEEEeCCCCCCcc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQ-----------ERSLQ---MAGLNLINKTLM---VQGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~-----------~~~~~---t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~~~~  161 (283)
                      --++.||-.---|||||. +++.-.-           .+...   ..|++...++..   .+|+.+.++++||||+-.|.
T Consensus        60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs  139 (650)
T KOG0462|consen   60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS  139 (650)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence            457888999999999999 8863211           01111   224444433322   24677999999999999999


Q ss_pred             cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335          162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  241 (283)
Q Consensus       162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
                      ......+.-|+++|||+|++..-.-+.+..++..+..   +-.+|.|.||+|+    +....+.+..++.++......+.
T Consensus       140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDl----p~adpe~V~~q~~~lF~~~~~~~  212 (650)
T KOG0462|consen  140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDL----PSADPERVENQLFELFDIPPAEV  212 (650)
T ss_pred             ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCC----CCCCHHHHHHHHHHHhcCCccce
Confidence            9999999999999999999987555555555555543   4567899999995    55555555666666666666688


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          242 FFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       242 ~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +.+|||+|.|++++|+.|++.+....
T Consensus       213 i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  213 IYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             EEEEeccCccHHHHHHHHHhhCCCCC
Confidence            99999999999999999999986543

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.44  E-value=1.8e-12  Score=122.93  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=78.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc--Cccc--cc--------------c---ccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG--NEQE--RS--------------L---QMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~--~~~~--~~--------------~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      ...+|+|+|..++|||||+ +++.  +...  ..              .   ...|..+......++...+.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            4579999999999999999 8863  1110  00              0   0124444444444444567789999999


Q ss_pred             CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      +..|......+++.+|++|+|+|+++...- ....++.....  .+.|+++++||+|+.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK~D~~  144 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINKLDRD  144 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEECCccc
Confidence            999888777889999999999999875322 22344444433  245668999999973

>COG2262 HflX GTPases [General function prediction only]

Probab=99.44  E-value=4.4e-12  Score=113.53  Aligned_cols=157  Identities=17%  Similarity=0.141  Sum_probs=108.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--ccchhh------hcc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVPI------ACK  169 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~~------~~~  169 (283)
                      -..|.++|-.|+|||||+ .+++...- .+.-....+...+.+.+.+ ...+.+-||.|--+.  ..+...      -..
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~  270 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK  270 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence            467999999999999999 88876544 4444556666777777764 334667899984321  112222      236


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      .||+++.|+|+++++..+.+..-.+-+....- +.|.|+|.||+|+   +.+..      ....+..... ..+.+||++
T Consensus       271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~---~~~~~------~~~~~~~~~~-~~v~iSA~~  340 (411)
T COG2262         271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL---LEDEE------ILAELERGSP-NPVFISAKT  340 (411)
T ss_pred             cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc---cCchh------hhhhhhhcCC-CeEEEEecc
Confidence            89999999999999877777655555555533 3455899999996   33221      1122222222 588999999


Q ss_pred             CcCHHHHHHHHHHHHhCCc
Q 023335          249 NINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~~  267 (283)
                      |.|++.+++.|...+....
T Consensus       341 ~~gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         341 GEGLDLLRERIIELLSGLR  359 (411)
T ss_pred             CcCHHHHHHHHHHHhhhcc
Confidence            9999999999999887543

>CHL00071 tufA elongation factor Tu

Probab=99.44  E-value=1.7e-12  Score=120.21  Aligned_cols=150  Identities=9%  Similarity=0.070  Sum_probs=95.0

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc---------------cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE---------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ....++|+++|..++|||||+ ++++..-.               ......|.........+......+.+.||||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            345799999999999999999 99864110               00001233333333344444556788999998877


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  238 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~  238 (283)
                      .......+..+|++++|+|+...-.- .....+..+...  ..| .|++.||+|+   .+.+. .....+++..+.+..+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~~--g~~~iIvvvNK~D~---~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQV--GVPNIVVFLNKEDQ---VDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEEccCC---CCHHHHHHHHHHHHHHHHHHhC
Confidence            66666677899999999999864321 222333333322  335 4688999997   22111 1122456677766654


Q ss_pred             -----CcEEEEcCCCCcCH
Q 023335          239 -----ATLFFSSATHNINV  252 (283)
Q Consensus       239 -----~~~~e~Sa~~~~~v  252 (283)
                           ++++.+||.+|.|+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence                 57889999998743

>TIGR00503 prfC peptide chain release factor 3

Probab=99.43  E-value=1.8e-12  Score=123.06  Aligned_cols=113  Identities=11%  Similarity=0.104  Sum_probs=79.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc--Cccc--c--------------cc---ccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG--NEQE--R--------------SL---QMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~--~~~~--~--------------~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      ...+|+|+|.+++|||||+ +++.  +...  .              ..   ...|.++......++...+.+.+|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            4679999999999999999 8752  1111  0              00   1224455555555666678899999999


Q ss_pred             CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      +..|......+++.+|++|+|+|.++.-. .....+++..+.  .+.|.++++||+|+
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~  144 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDR  144 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccc
Confidence            99888777778999999999999987421 223344444333  24566899999996

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=3e-13  Score=106.20  Aligned_cols=159  Identities=15%  Similarity=0.159  Sum_probs=111.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +.-|++++|-.|+|||||+ .+.+++.....||.-..  +..+.+.+  +++..+|.+|+..-+..+..|+..+|++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            3569999999999999999 88887776666654332  22444544  5688899999998888999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-----------CcEEEE
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-----------ATLFFS  244 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~e~  244 (283)
                      +|+.|.+-|.+.+.-++.+....  ...|+++.|||+|......+++-+. .-.+..++...+           +..|.|
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~-~l~l~~~t~~~~~v~~~~~~~rp~evfmc  173 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRF-HLGLSNFTTGKGKVNLTDSNVRPLEVFMC  173 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHH-HHHHHHHhcccccccccCCCCCeEEEEEE
Confidence            99999999998887777665543  3567789999999633221111000 111122222111           235678


Q ss_pred             cCCCCcCHHHHHHHHHHH
Q 023335          245 SATHNINVNKIFKFIMAK  262 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~  262 (283)
                      |...+.+.-+.|.|+...
T Consensus       174 si~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  174 SIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEccCccceeeeehhhh
Confidence            888888878888887654

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.42  E-value=2.8e-13  Score=110.50  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhh---hcccCcEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPI---ACKDAVAIL  175 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~---~~~~ad~ii  175 (283)
                      --|+++|++|+|||+|. ++..+...........+.   .+.+ +...-.+.+.|+||+++.+.....   +...+.+||
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            46899999999999999 999986654333221111   1112 123345788999999998764433   478999999


Q ss_pred             EEEECCC-hhhHHHHHHHHHHHHhH---CCCCce-EEEeecCCCCCC
Q 023335          176 FMFDLTS-RCTLNSIVGWYSEARKW---NQTAIP-ILIGTKFDDFVR  217 (283)
Q Consensus       176 lv~D~~~-~~s~~~~~~~~~~i~~~---~~~~~~-ilvgnK~DL~~~  217 (283)
                      ||+|.+. ...+.++.+++..+...   ..+.+| +|++||.|+...
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            9999974 34455554444444332   245566 588999998543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.42  E-value=2.9e-12  Score=119.18  Aligned_cols=178  Identities=19%  Similarity=0.352  Sum_probs=124.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEEC--CeEEEEEEEeCCCCCCcccchhhhcccC----c
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDA----V  172 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----d  172 (283)
                      .-.|+|+|+.++|||||| +|.+.+  +..++.+.+|....+.-+  +....+.+|-..|...+..+....+...    -
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            457999999999999999 986543  344566776654443322  2245789999998777777766555422    3


Q ss_pred             EEEEEEECCChhhH-HHHHHHHHHHHhHC------------------------------C-----------------C--
Q 023335          173 AILFMFDLTSRCTL-NSIVGWYSEARKWN------------------------------Q-----------------T--  202 (283)
Q Consensus       173 ~iilv~D~~~~~s~-~~~~~~~~~i~~~~------------------------------~-----------------~--  202 (283)
                      ++|+|.|++.+..+ +.+..|+..++.+.                              .                 +  
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            88999999998654 45566654332210                              0                 0  


Q ss_pred             --------------CceEEEeecCCCCCCCCCCc------ccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          203 --------------AIPILIGTKFDDFVRLPPDL------QWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       203 --------------~~~ilvgnK~DL~~~l~~~~------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                                    .|++||++|+|....+..+.      -..+.+-++.+|-.+|+.+|++|++...|++-++++|.+.
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~  262 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR  262 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence                          13469999999643332221      1234677899999999999999999999999999999999


Q ss_pred             HhCCccccccccCCCCC
Q 023335          263 LFNLPWTVKRNLTIGEP  279 (283)
Q Consensus       263 i~~~~~~~~~~~~~~~~  279 (283)
                      ++..+.....+....+.
T Consensus       263 l~~~~f~~~~~vv~~d~  279 (472)
T PF05783_consen  263 LYGFPFKTPAQVVERDA  279 (472)
T ss_pred             hccCCCCCCceeecccc
Confidence            99988776555544443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.40  E-value=2.5e-12  Score=112.55  Aligned_cols=144  Identities=15%  Similarity=0.126  Sum_probs=88.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-c---cc-c--------------cceeeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-R---SL-Q--------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~---~~-~--------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  161 (283)
                      +|+++|.+|+|||||+ +++..... .   .. .              ..........+.++  .+.+.+|||+|...|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence            4899999999999999 88643211 0   00 0              01111122233333  4668899999998887


Q ss_pred             cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335          162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  241 (283)
Q Consensus       162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
                      .....+++.+|++++|+|.++.........|. .+..  .+.|.++++||+|+.    ..   ...+....+...++..+
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~----~~---~~~~~~~~l~~~~~~~~  148 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRE----RA---DFDKTLAALQEAFGRPV  148 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccC----CC---CHHHHHHHHHHHhCCCe
Confidence            77788899999999999999876554433332 3332  245668999999962    11   12334444555556554


Q ss_pred             EE--EcCCCCcCHHHHHH
Q 023335          242 FF--SSATHNINVNKIFK  257 (283)
Q Consensus       242 ~e--~Sa~~~~~v~~lf~  257 (283)
                      +.  +...++.++..+.+
T Consensus       149 ~~~~ip~~~~~~~~~~vd  166 (268)
T cd04170         149 VPLQLPIGEGDDFKGVVD  166 (268)
T ss_pred             EEEEecccCCCceeEEEE
Confidence            43  45566555544433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.40  E-value=3.8e-12  Score=110.26  Aligned_cols=170  Identities=21%  Similarity=0.334  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEE--CCeEEEEEEEeCCCCCCcccchhhhcccC----cE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMV--QGARIAFSIWDVGGDSRSFDHVPIACKDA----VA  173 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----d~  173 (283)
                      -.|+|+|+.++|||||| ++-+.+  ...+..|..|..-.+.-  .+...++.+|-.-|+-....+....+...    -.
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            47999999999999999 987766  33344555554333322  22346788898888776666665555332    37


Q ss_pred             EEEEEECCChh-hHHHHHHHHHHHHhHCC---------------------------------------------------
Q 023335          174 ILFMFDLTSRC-TLNSIVGWYSEARKWNQ---------------------------------------------------  201 (283)
Q Consensus       174 iilv~D~~~~~-s~~~~~~~~~~i~~~~~---------------------------------------------------  201 (283)
                      +||+.|++++. -++.+++|..-++++..                                                   
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll  210 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL  210 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence            89999999994 46777888665443210                                                   


Q ss_pred             -----------CCceEEEeecCCCCCCCCC------CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          202 -----------TAIPILIGTKFDDFVRLPP------DLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       202 -----------~~~~ilvgnK~DL~~~l~~------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                                 ..+++||.+|||....+..      +.-..+...+++||-.+|...+++|+|...|++-++++|+++++
T Consensus       211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence                       0234689999996322221      11223467789999999999999999999999999999999998


Q ss_pred             CCcccccc
Q 023335          265 NLPWTVKR  272 (283)
Q Consensus       265 ~~~~~~~~  272 (283)
                      ..+.....
T Consensus       291 G~~fttpA  298 (473)
T KOG3905|consen  291 GFPFTTPA  298 (473)
T ss_pred             CcccCCcc
Confidence            87755443

>PLN03126 Elongation factor Tu; Provisional

Probab=99.40  E-value=2.1e-12  Score=121.10  Aligned_cols=149  Identities=10%  Similarity=0.091  Sum_probs=96.0

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCc------ccc---------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNE------QER---------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~------~~~---------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ....++|+++|..++|||||+ +++...      ...         .....|.........++.....+.++|+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            455799999999999999999 998521      110         0112233333333334334557789999999998


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHc-
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAM-  237 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~-  237 (283)
                      .......+..+|++++|+|+++...-+. .+++..+...  ..+ .|++.||+|+   .+.+. .....+++..+.+.. 
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--gi~~iIvvvNK~Dl---~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQ---VDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEecccc---cCHHHHHHHHHHHHHHHHHhcC
Confidence            7666666789999999999886533222 3344444332  334 4688999997   22111 122345677777665 


Q ss_pred             ----CCcEEEEcCCCCcC
Q 023335          238 ----KATLFFSSATHNIN  251 (283)
Q Consensus       238 ----~~~~~e~Sa~~~~~  251 (283)
                          +++++.+||.+|.|
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                35788899998854

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.40  E-value=1.7e-12  Score=126.45  Aligned_cols=153  Identities=15%  Similarity=0.097  Sum_probs=91.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-c-c----------cc-c-------------------ceeeeeEEEEEECCe
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-R-S----------LQ-M-------------------AGLNLINKTLMVQGA  145 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~-~----------~~-t-------------------~~~~~~~~~~~~~~~  145 (283)
                      ..++|+++|.+++|||||+ +++...-. . .          .. +                   .|.........+...
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~  102 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP  102 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence            3579999999999999999 98753211 0 0          00 1                   111111222223333


Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  225 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~  225 (283)
                      ...+.|+||||++.|.......+..+|++++|+|++....-+. ...+..+... ...++||+.||+|+... +.+....
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~~~~iivvvNK~D~~~~-~~~~~~~  179 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-GIRHVVLAVNKMDLVDY-DQEVFDE  179 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-CCCeEEEEEEecccccc-hhHHHHH
Confidence            4567899999998876545556789999999999976432111 1112222222 22345789999997210 0111111


Q ss_pred             hHHHHHHHHHHcCC---cEEEEcCCCCcCHHH
Q 023335          226 IATQARAYAKAMKA---TLFFSSATHNINVNK  254 (283)
Q Consensus       226 ~~~~~~~~~~~~~~---~~~e~Sa~~~~~v~~  254 (283)
                      ...++.++.+.++.   +++.+||++|.|+++
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            23455555566654   589999999999874

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.39  E-value=8.7e-12  Score=95.04  Aligned_cols=104  Identities=13%  Similarity=0.206  Sum_probs=68.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc---------chhhhcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIACK  169 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~~~  169 (283)
                      +|+|+|.+|+|||||+ .+++....  ...+..........+.+++..+  .++||||-..-..         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999 99986443  4444332333335556677664  5899999654211         1222347


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeec
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTK  211 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK  211 (283)
                      .+|++++|+|.++... +....++++++   ...|.++|.||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            9999999999877322 22334444442   45666899998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.38  E-value=3.1e-12  Score=110.39  Aligned_cols=96  Identities=16%  Similarity=0.183  Sum_probs=76.9

Q ss_pred             CCcccchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH
Q 023335          158 SRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA  236 (283)
Q Consensus       158 ~~~~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~  236 (283)
                      ++|..+.+.+++++|++++|||++++. ||+.+.+|+..+..  .+.+++||+||+||   .+ . .....+.+..+ +.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL---~~-~-~~~~~~~~~~~-~~   95 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDL---LD-D-EDMEKEQLDIY-RN   95 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECccc---CC-C-HHHHHHHHHHH-HH
Confidence            678888999999999999999999887 89999999987654  45677999999997   21 1 22223444444 45


Q ss_pred             cCCcEEEEcCCCCcCHHHHHHHHHH
Q 023335          237 MKATLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       237 ~~~~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      ++++++++||++|.|++++|+.+..
T Consensus        96 ~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        96 IGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CCCeEEEEecCCchhHHHHHhhhcC
Confidence            7889999999999999999998763

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.38  E-value=7.6e-12  Score=115.32  Aligned_cols=160  Identities=9%  Similarity=0.090  Sum_probs=100.6

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ....++|+++|..++|||||+ ++++....            +..+   ..|.........+......+.+.||||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            345799999999999999999 99863110            0000   2233333334445444556788999999887


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceE-EEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  238 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~  238 (283)
                      .......+..+|++++|+|+++...- ....++..+...  ..|.+ ++.||+|+   .+.+. .....+++.++....+
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~--g~p~iiVvvNK~D~---~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFLNKCDM---VDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc--CCCEEEEEEeecCC---cchHHHHHHHHHHHHHHHHhcC
Confidence            66666667899999999999864322 223334444332  33544 67999997   22111 1122445666665543


Q ss_pred             -----CcEEEEcCCCCc----------CHHHHHHHHHHH
Q 023335          239 -----ATLFFSSATHNI----------NVNKIFKFIMAK  262 (283)
Q Consensus       239 -----~~~~e~Sa~~~~----------~v~~lf~~l~~~  262 (283)
                           ++++.+||++|.          ++..+++.|.+.
T Consensus       163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence                 578999999875          455666666554

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=4.5e-12  Score=115.32  Aligned_cols=161  Identities=17%  Similarity=0.182  Sum_probs=106.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc-cc--------chhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-FD--------HVPI  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~--------~~~~  166 (283)
                      ..++|+|+|.||||||||+ .+.+....  .+.+.+.-|.....+.++|.+  +.+.||+|-.+- .+        ....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHH
Confidence            3589999999999999999 99988876  777755556566677777755  566899996551 11        1234


Q ss_pred             hcccCcEEEEEEEC--CChhhHHHHHHHHHHHHhHC-------CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc
Q 023335          167 ACKDAVAILFMFDL--TSRCTLNSIVGWYSEARKWN-------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM  237 (283)
Q Consensus       167 ~~~~ad~iilv~D~--~~~~s~~~~~~~~~~i~~~~-------~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~  237 (283)
                      .++.||++++|+|+  ++-++-..+.+.++......       .+.+.|++.||.|+....+......     ..+....
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-----~~~~~~~  419 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-----VVYPSAE  419 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-----eeccccc
Confidence            56899999999999  44444344444454443221       2356689999999843322211100     0111111


Q ss_pred             ---CCc-EEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          238 ---KAT-LFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       238 ---~~~-~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                         ..+ ..++|+++++|++.+...+.+.+...
T Consensus       420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             cCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence               123 45699999999999999988876443

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.36  E-value=7.9e-12  Score=116.63  Aligned_cols=155  Identities=14%  Similarity=0.128  Sum_probs=97.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCc--cc-------------------------cccc---cceeeeeEEEEEECCeE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNE--QE-------------------------RSLQ---MAGLNLINKTLMVQGAR  146 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~--~~-------------------------~~~~---t~~~~~~~~~~~~~~~~  146 (283)
                      ...++|+++|..++|||||+ +++..-  ..                         +..+   ..|.........+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            45789999999999999999 886511  00                         0000   11333333333444556


Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hH---HHHHHHHHHHHhHCCCCce-EEEeecCCCCC-CC
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TL---NSIVGWYSEARKWNQTAIP-ILIGTKFDDFV-RL  218 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~---~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~-~l  218 (283)
                      ..+.|+||||+++|.......+..+|++++|+|.++..   .|   ....+.+..+...  ..+. |++.||+|+.. ..
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~  162 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNY  162 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccchh
Confidence            77899999999998777777788999999999998642   11   1112222222221  3343 68999999411 01


Q ss_pred             CCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023335          219 PPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK  254 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~  254 (283)
                      +++.-..+.+++..+.+..+     ++++.+|+.+|+|+.+
T Consensus       163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            11222333566666666554     4688999999999864

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.35  E-value=7.8e-12  Score=109.30  Aligned_cols=110  Identities=14%  Similarity=0.143  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcc--c------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQ--E------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  163 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~--~------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  163 (283)
                      +|+++|.+|+|||||+ +++...-  .            +..+   ..|.........+.....++.+|||||...|...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            4899999999999999 8863110  0            0000   1133322222222223467889999999888888


Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      ...+++.+|++|+|+|.++...-+. ..++..+...  +.|.+++.||+|+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~  128 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDR  128 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCC
Confidence            8889999999999999987532222 2333444332  3566899999996

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.4e-11  Score=113.70  Aligned_cols=153  Identities=9%  Similarity=0.062  Sum_probs=101.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccc-cceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..=|+++|.---|||||+ .+-+.......+ ...-......+.++ +..-.+.|.||||++.|..|+..-..-+|++||
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            345889999999999999 887666552222 22222222334443 123457889999999999999998899999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHhH-CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH---HHHcC--CcEEEEcCC
Q 023335          177 MFDLTSR---CTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY---AKAMK--ATLFFSSAT  247 (283)
Q Consensus       177 v~D~~~~---~s~~~~~~~~~~i~~~-~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~---~~~~~--~~~~e~Sa~  247 (283)
                      |+|++|.   ++.+.       +... ..+.|.|++.||+|..    +........+..++   ++.++  ..++.+||+
T Consensus        85 VVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~----~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~  153 (509)
T COG0532          85 VVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKP----EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAK  153 (509)
T ss_pred             EEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCC----CCCHHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence            9999874   44333       2222 2255668999999962    22222222222221   22222  457889999


Q ss_pred             CCcCHHHHHHHHHHHH
Q 023335          248 HNINVNKIFKFIMAKL  263 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i  263 (283)
                      +|+|+++|++.+.-..
T Consensus       154 tg~Gi~eLL~~ill~a  169 (509)
T COG0532         154 TGEGIDELLELILLLA  169 (509)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999877543

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.35  E-value=1e-11  Score=112.43  Aligned_cols=157  Identities=13%  Similarity=0.184  Sum_probs=111.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cc----------c---ccceeeeeEEEEE--E---CCeEEEEEEEeCCCCCCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RS----------L---QMAGLNLINKTLM--V---QGARIAFSIWDVGGDSRS  160 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~----------~---~t~~~~~~~~~~~--~---~~~~~~l~i~Dt~G~~~~  160 (283)
                      -+..++-.-.-|||||. |++...-. +.          .   ...|++.....+.  +   +|+.+.++++||||+-.|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            35677888889999999 98643211 00          0   0124444333332  2   568899999999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-  239 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-  239 (283)
                      .......+..|.+.+||+|++..-.-+.+.+.|..+..   +--+|-|.||+||    |......+.++++.   -.|+ 
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDL----P~Adpervk~eIe~---~iGid  159 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDL----PAADPERVKQEIED---IIGID  159 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccC----CCCCHHHHHHHHHH---HhCCC
Confidence            88888889999999999999987655666666666653   3345789999995    44433333444443   4555 


Q ss_pred             --cEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          240 --TLFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       240 --~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                        ..+.+|||+|.||+++++.|++.+....
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence              4678999999999999999999986544

>PLN03127 Elongation factor Tu; Provisional

Probab=99.33  E-value=3.6e-11  Score=112.13  Aligned_cols=161  Identities=11%  Similarity=0.112  Sum_probs=97.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcC------ccc------cc---cccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGN------EQE------RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~------~~~------~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ....++|+++|..++|||||+ ++.+.      ...      +.   ....|.........++....++.+.||||+++|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            455799999999999999999 98622      110      00   001233333344455555567889999999887


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCc-ccchHHHHHHHHHHc-
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKAM-  237 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~-  237 (283)
                      .......+..+|++++|+|.++...-+. ...+..+...  ..+. |++.||+|+   .+.+. .....+++.++.... 
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDl---v~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDV---VDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeecc---CCHHHHHHHHHHHHHHHHHHhC
Confidence            6555555678999999999876432221 2233333322  3453 678999997   22111 111233444555443 


Q ss_pred             ----CCcEEEEcCC---CCcC-------HHHHHHHHHHHH
Q 023335          238 ----KATLFFSSAT---HNIN-------VNKIFKFIMAKL  263 (283)
Q Consensus       238 ----~~~~~e~Sa~---~~~~-------v~~lf~~l~~~i  263 (283)
                          .++++.+||.   +|.|       +.++++.+.+.+
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence                2567788775   5555       667777776654

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=1.1e-11  Score=101.57  Aligned_cols=156  Identities=18%  Similarity=0.226  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcc---cCcEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK---DAVAILFM  177 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---~ad~iilv  177 (283)
                      .|+++|..++|||+|. ++..+.+...++....+  ...+.+....  ..+.|.||+.+.+.-...+++   .+-+++||
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            5899999999999999 99988655443332222  2233343333  678999999987766666666   78999999


Q ss_pred             EECCC-hhhHHHHHHH-HHHHHhH--CCCCceE-EEeecCCCCCCCCCCcccc-hHHHHHHHHH----------------
Q 023335          178 FDLTS-RCTLNSIVGW-YSEARKW--NQTAIPI-LIGTKFDDFVRLPPDLQWT-IATQARAYAK----------------  235 (283)
Q Consensus       178 ~D~~~-~~s~~~~~~~-~~~i~~~--~~~~~~i-lvgnK~DL~~~l~~~~~~~-~~~~~~~~~~----------------  235 (283)
                      +|..- ..-..++.++ |+-+...  ..+.|+| |++||.|+.-..+.+.-+. .+.|+..+..                
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~  195 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD  195 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence            99753 2223344343 4433333  3566665 7899999843322211111 1222222111                


Q ss_pred             ----------------HcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          236 ----------------AMKATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       236 ----------------~~~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                                      ...+.|.+.|++++ +++++-+|+.+.
T Consensus       196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                            11245678999988 799999988764

>PRK13768 GTPase; Provisional

Probab=99.30  E-value=1.1e-11  Score=107.51  Aligned_cols=114  Identities=11%  Similarity=0.045  Sum_probs=71.9

Q ss_pred             EEEEEeCCCCCCc---ccchhhhccc-----CcEEEEEEECCChhhHHHH--HHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335          148 AFSIWDVGGDSRS---FDHVPIACKD-----AVAILFMFDLTSRCTLNSI--VGWYSEARKWNQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       148 ~l~i~Dt~G~~~~---~~~~~~~~~~-----ad~iilv~D~~~~~s~~~~--~~~~~~i~~~~~~~~~ilvgnK~DL~~~  217 (283)
                      .+.+||++|+.+.   +.....+++.     ++++++++|.+...+..+.  ..|+........+.|+++|.||+|+   
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~---  174 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL---  174 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh---
Confidence            5789999998763   3344333332     8999999999765443333  2344433333346778999999997   


Q ss_pred             CCCCcccchHHHHH------------------------HHHHHcC--CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          218 LPPDLQWTIATQAR------------------------AYAKAMK--ATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       218 l~~~~~~~~~~~~~------------------------~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ++............                        +..+..+  .+++++|+++++|+++++++|.+.+.
T Consensus       175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            22221111111111                        1222334  47899999999999999999988764

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.29  E-value=2.6e-11  Score=113.01  Aligned_cols=162  Identities=15%  Similarity=0.176  Sum_probs=100.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcc---ccccc---c--ceeeeeEE--------EE---EECC-------------
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ---ERSLQ---M--AGLNLINK--------TL---MVQG-------------  144 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~---~~~~~---t--~~~~~~~~--------~~---~~~~-------------  144 (283)
                      ...+.|.++|.-..|||||+ .+.+-..   .+...   |  .|......        ..   ..+.             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            45789999999999999999 8875322   11111   1  12221100        00   0100             


Q ss_pred             ---eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          145 ---ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       145 ---~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                         ....+.+.|+||++.|.......+..+|++++|+|+++.. .-+. .+.+..+.. ..-.+.|+|.||+|+   .+.
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~-lgi~~iIVvlNKiDl---v~~  186 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEI-MKLKHIIILQNKIDL---VKE  186 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHH-cCCCcEEEEEecccc---cCH
Confidence               0236789999999988666666678999999999998641 1111 222222222 222345789999997   222


Q ss_pred             CcccchHHHHHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          221 DLQWTIATQARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      +......++++++.+.   .+.+++.+||++|+|+++|++.|.+.+.
T Consensus       187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            2222224455555443   3568999999999999999999887553

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.28  E-value=1.6e-10  Score=96.45  Aligned_cols=158  Identities=14%  Similarity=0.103  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-ccc--ccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------ch---h
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HV---P  165 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~---~  165 (283)
                      ++|+++|.+|||||||+ .+++.... ...  +....+.......+++.  .+.++||||-.....        +.   .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999 99987643 221  11222222233344554  578899999654321        11   1


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccc----hHHHHHHHHHHcC
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWT----IATQARAYAKAMK  238 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~----~~~~~~~~~~~~~  238 (283)
                      ....+.|++|+|.|+.+ -+-++ ...++.+++...   -.+.|+|.|+.|.   +.......    .....+.+.+..+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~---l~~~~~~~~~~~~~~~l~~l~~~c~  153 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD---LEGGTLEDYLENSCEALKRLLEKCG  153 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccc---cCCCcHHHHHHhccHHHHHHHHHhC
Confidence            12367899999999886 22222 233444444322   2456899999995   33221111    1245566666666


Q ss_pred             CcEEEEc-----CCCCcCHHHHHHHHHHHHhC
Q 023335          239 ATLFFSS-----ATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       239 ~~~~e~S-----a~~~~~v~~lf~~l~~~i~~  265 (283)
                      -.|+..+     +..+.++++|++.+-+.+.+
T Consensus       154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            5565443     55678899999999888876

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.5e-11  Score=108.67  Aligned_cols=159  Identities=13%  Similarity=0.084  Sum_probs=101.9

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCc--cc-------------------------cccc---cceeeeeEEEEEECCe
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNE--QE-------------------------RSLQ---MAGLNLINKTLMVQGA  145 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~--~~-------------------------~~~~---t~~~~~~~~~~~~~~~  145 (283)
                      ....++++++|...+|||||+ +++..-  +.                         +...   -.|+++......+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            345799999999999999999 986421  00                         0000   1244555555566666


Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHHHH--HHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSI--VGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~~~--~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      .+.+.|.|+||+..|-.-.-.-...||+.|||+|+.+.+   .|.--  .+-.-.+.+...-.-.|++.||+|+.. .++
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde  162 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDE  162 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc-cCH
Confidence            788999999997777655555668999999999998764   12110  011111222233334478999999733 222


Q ss_pred             CcccchHHHHHHHHHHcCC-----cEEEEcCCCCcCHHHHH
Q 023335          221 DLQWTIATQARAYAKAMKA-----TLFFSSATHNINVNKIF  256 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~-----~~~e~Sa~~~~~v~~lf  256 (283)
                      ++-..+..++..+.+..|.     +|+.+|+..|+|+.+.=
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            2223345666667766654     58899999999987643

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.27  E-value=2.7e-11  Score=110.41  Aligned_cols=163  Identities=17%  Similarity=0.214  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----ccchhh----hc-
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPI----AC-  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~----~~-  168 (283)
                      .-.++++|-||||||||+ ........ .+|+.+.-.++...+  +.+...+++.||||.-.-    ++....    .+ 
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            346899999999999999 88877777 888855544443333  334466888999994321    111111    11 


Q ss_pred             ccCcEEEEEEECCChh--hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEc
Q 023335          169 KDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~S  245 (283)
                      .--.+|+++.|++..+  |.+.-..+++.|+....+.|.|+|.||+|+   +..+..... .+....+...-+++++++|
T Consensus       246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~---m~~edL~~~~~~ll~~~~~~~~v~v~~tS  322 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA---MRPEDLDQKNQELLQTIIDDGNVKVVQTS  322 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc---cCccccCHHHHHHHHHHHhccCceEEEec
Confidence            1124789999998765  455556889999988888899999999997   444333322 3444455555568999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCc
Q 023335          246 ATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +.+.+||.++-......++...
T Consensus       323 ~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  323 CVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             ccchhceeeHHHHHHHHHHHHH
Confidence            9999999999888888776554

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.25  E-value=1.5e-11  Score=101.94  Aligned_cols=166  Identities=17%  Similarity=0.211  Sum_probs=109.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc-----ccchhhhcccC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACKDA  171 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~a  171 (283)
                      .-||+++|..|+||||+- -+..+...  ...++..+|+....+.+-| ++.+.+||++||+.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            469999999999999998 54433322  2222333444433444433 466899999999853     22445577899


Q ss_pred             cEEEEEEECCChhh---HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH----HHHHHHHHHcCCcEEEE
Q 023335          172 VAILFMFDLTSRCT---LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA----TQARAYAKAMKATLFFS  244 (283)
Q Consensus       172 d~iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~----~~~~~~~~~~~~~~~e~  244 (283)
                      ++.|+|||+...+-   |...++-++.+.++.|...+++..+|.||   ++.+.+..+.    +..+.+.+..++.+|.+
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDL---v~~d~r~~if~~r~~~l~~~s~~~~~~~f~T  159 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDL---VQEDARELIFQRRKEDLRRLSRPLECKCFPT  159 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechh---cccchHHHHHHHHHHHHHHhccccccccccc
Confidence            99999999998764   33444566777777888888899999998   5555555542    33444455556778888


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCCcccc
Q 023335          245 SATHNINVNKIFKFIMAKLFNLPWTV  270 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~~~~~  270 (283)
                      |..+ +++-+.+..+...++..+...
T Consensus       160 siwD-etl~KAWS~iv~~lipn~~~~  184 (295)
T KOG3886|consen  160 SIWD-ETLYKAWSSIVYNLIPNVSAL  184 (295)
T ss_pred             chhh-HHHHHHHHHHHHhhCCChHHH
Confidence            8764 345555566666665555433

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.24  E-value=4.7e-11  Score=117.45  Aligned_cols=110  Identities=14%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCc--cc---cc--------------cccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNE--QE---RS--------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~--~~---~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      -.+|+|+|..++|||||+ +++...  ..   ..              ...+..+.....+.++  +..+.+|||||+.+
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~~   87 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHVD   87 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCcc
Confidence            458999999999999999 996321  10   00              0111222223344444  46789999999999


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      |......+++.+|++++|+|+++....+... ++..+...  +.|.++++||+|+
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~ivviNK~D~  139 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANRY--EVPRIAFVNKMDK  139 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHHc--CCCEEEEEECCCC
Confidence            8888888999999999999998865554433 33333332  4566899999996

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.24  E-value=9.3e-11  Score=117.87  Aligned_cols=107  Identities=11%  Similarity=0.076  Sum_probs=71.2

Q ss_pred             EEEEeCCCCCCcccchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc--
Q 023335          149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ--  223 (283)
Q Consensus       149 l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~--  223 (283)
                      +.||||||++.|..+....+..+|++++|+|+++   +.+++.+.    .+...  +.|.|+|+||+|+.........  
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~~--~iPiIVViNKiDL~~~~~~~~~~~  601 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQY--KTPFVVAANKIDLIPGWNISEDEP  601 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHHc--CCCEEEEEECCCCccccccccchh
Confidence            7899999999998888888899999999999987   45555443    22222  4566899999997321110000  


Q ss_pred             ---------cchHHHHH----H----HHH------------Hc--CCcEEEEcCCCCcCHHHHHHHHHH
Q 023335          224 ---------WTIATQAR----A----YAK------------AM--KATLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       224 ---------~~~~~~~~----~----~~~------------~~--~~~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                               ....++..    +    +++            .+  .++++++||++|+|+++++..|..
T Consensus       602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence                     00111110    1    111            11  347899999999999999987754

>PRK12740 elongation factor G; Reviewed

Probab=99.23  E-value=5.2e-11  Score=116.93  Aligned_cols=105  Identities=14%  Similarity=0.077  Sum_probs=70.7

Q ss_pred             EcCCCCcHHHhH-hhhcCccc----c----------c-----cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchh
Q 023335          106 LGDCQIGKTSFV-KYVGNEQE----R----------S-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP  165 (283)
Q Consensus       106 lG~~~vGKSSLi-~~~~~~~~----~----------~-----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~  165 (283)
                      +|..++|||||+ +++...-.    .          .     .....+......+.++  .+.+.+|||||+..|.....
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence            699999999999 98532110    0          0     0111122222333343  46789999999988877778


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      .+++.+|++++|+|.++.........|. .+..  .+.|.++|+||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCC
Confidence            8899999999999999876665544443 3332  245668999999963

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.21  E-value=6.1e-11  Score=116.96  Aligned_cols=113  Identities=12%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC---------------cccc----ccccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN---------------EQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  158 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~---------------~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  158 (283)
                      ...+|+++|..++|||||+ +++..               .+..    ...|.........+.+++..+.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            3579999999999999999 98742               1111    01133333333334456778899999999999


Q ss_pred             CcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       159 ~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      +|.......++.+|++|+|+|+.+.-..+....|.. +.  ..+.|+++++||+|.
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~--~~~~p~ivviNKiD~  150 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL--KENVKPVLFINKVDR  150 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH--HcCCCEEEEEEChhc
Confidence            998888889999999999999987433222222322 21  224566899999996

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK12739 elongation factor G; Reviewed

Probab=99.20  E-value=1.2e-10  Score=114.61  Aligned_cols=111  Identities=17%  Similarity=0.144  Sum_probs=75.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC--ccc-----c------------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN--EQE-----R------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~--~~~-----~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      -.+|+|+|..++|||||+ +++..  ...     .            ....+..+.....+.+++  ..+.++||||+..
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~   85 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVD   85 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHH
Confidence            578999999999999999 98642  100     0            011222333333444444  5678899999988


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      |.......++.+|++|+|+|.++...-+.. ..+..+..  ...|.|++.||+|+.
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~--~~~p~iv~iNK~D~~  138 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK--YGVPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCCC
Confidence            877788889999999999999876443332 23333333  245668999999974

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.18  E-value=5e-10  Score=103.90  Aligned_cols=163  Identities=11%  Similarity=0.122  Sum_probs=119.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      .+..-+++.++|..++|||.|+ .|++..+. ++..++...+....+.+.|+...+.+-|.+-. ....+...- ..||+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3445688999999999999999 99999888 45456777777777777788888888888765 222222222 78999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCH
Q 023335          174 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINV  252 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v  252 (283)
                      +.++||.+++.||+.+...++..... ...|.++|++|+||    .+..++...+. .+++++++++ ...+|.++... 
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dl----De~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADL----DEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeecccc----chhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-
Confidence            99999999999999887766654443 45566899999996    33333333333 8899999984 45677775333 


Q ss_pred             HHHHHHHHHHHhCCc
Q 023335          253 NKIFKFIMAKLFNLP  267 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~  267 (283)
                      .++|..|+..+..-.
T Consensus       572 ~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 NELFIKLATMAQYPH  586 (625)
T ss_pred             chHHHHHHHhhhCCC
Confidence            799999988776544

>PRK09866 hypothetical protein; Provisional

Probab=99.18  E-value=1e-09  Score=104.04  Aligned_cols=108  Identities=17%  Similarity=0.108  Sum_probs=70.6

Q ss_pred             EEEEEeCCCCCCc-cc----chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc
Q 023335          148 AFSIWDVGGDSRS-FD----HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  222 (283)
Q Consensus       148 ~l~i~Dt~G~~~~-~~----~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~  222 (283)
                      .+.|.||||-... ..    .....+.++|++++|+|.++.-+..+ ....+.+++.....|.++|.||+|+   .... 
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl---~dre-  305 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQ---QDRN-  305 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccC---CCcc-
Confidence            4678899997652 12    23346899999999999987544433 2344555544433577899999996   2111 


Q ss_pred             ccchHHHHHHHHH----HcC---CcEEEEcCCCCcCHHHHHHHHHH
Q 023335          223 QWTIATQARAYAK----AMK---ATLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       223 ~~~~~~~~~~~~~----~~~---~~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                       ....+.+..+.+    ..+   ..+|.+||+.|.|++++++.|.+
T Consensus       306 -eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 -SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             -cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence             111333333322    222   25889999999999999999877

>TIGR00101 ureG urease accessory protein UreG

Probab=99.18  E-value=3.6e-10  Score=94.48  Aligned_cols=105  Identities=13%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      ....+.++.|..-.....+   .-+|.+|.|+|+++.++...  .+..++.     .--++++||+|+..... ......
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi~-----~ad~~~~~k~d~~~~~~-~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGIT-----RSDLLVINKIDLAPMVG-ADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHhh-----hccEEEEEhhhcccccc-ccHHHH
Confidence            3455677777322112211   12688999999987665321  1112221     12289999999731111 111122


Q ss_pred             HHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          227 ATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       227 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      .+.++.+  ..+.+++++||++|+|++++|+++.+.+.
T Consensus       161 ~~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3333333  34678999999999999999999997764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.15  E-value=8.8e-10  Score=100.40  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCc-
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS-  160 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~-  160 (283)
                      ..++|.|+|.||||||||+ .+.+.... ..+|.++.+.....+.+.+..               .++.+.||||...- 
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            3579999999999999999 99777655 777866555555555554332               34899999996532 


Q ss_pred             ---ccchhh---hcccCcEEEEEEECC
Q 023335          161 ---FDHVPI---ACKDAVAILFMFDLT  181 (283)
Q Consensus       161 ---~~~~~~---~~~~ad~iilv~D~~  181 (283)
                         ..+...   .++++|++++|+|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence               123333   357899999999973

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=8.4e-10  Score=101.75  Aligned_cols=150  Identities=11%  Similarity=0.105  Sum_probs=100.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccc--cceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQ--MAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~--t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      +..=|-|+|.-.-|||||+ .+-+..... ..-  |..+--+  ++.+ +|  -.+.|.||||+..|..|+..-..-+|+
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF--~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI  227 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAF--TVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDI  227 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceE--EEecCCC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence            3445889999999999999 887766552 111  2222222  3333 44  457789999999999999988899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHH------HHcC--CcEEEE
Q 023335          174 ILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA------KAMK--ATLFFS  244 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~------~~~~--~~~~e~  244 (283)
                      ++||+...|.--    .+-++.|+... .+.|+|+..||+|.    +....   ....+++.      +++|  ...+++
T Consensus       228 vVLVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDk----p~a~p---ekv~~eL~~~gi~~E~~GGdVQvipi  296 (683)
T KOG1145|consen  228 VVLVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDK----PGANP---EKVKRELLSQGIVVEDLGGDVQVIPI  296 (683)
T ss_pred             EEEEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCC----CCCCH---HHHHHHHHHcCccHHHcCCceeEEEe
Confidence            999998887421    12223333332 25566788999994    33322   22222222      2333  467899


Q ss_pred             cCCCCcCHHHHHHHHHHHH
Q 023335          245 SATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ||++|+|++.|-+.++-..
T Consensus       297 SAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  297 SALTGENLDLLEEAILLLA  315 (683)
T ss_pred             ecccCCChHHHHHHHHHHH
Confidence            9999999999998877544

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.14  E-value=3.1e-10  Score=96.85  Aligned_cols=166  Identities=13%  Similarity=0.183  Sum_probs=103.1

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEE-EEEECCeEEEEEEEeCCCCCC-------cccchh
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINK-TLMVQGARIAFSIWDVGGDSR-------SFDHVP  165 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~  165 (283)
                      ....++|+++|..|+|||||+ .+..+...  ...+ .+.+.... ...+++  -.+.+||+||-++       ++....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg-~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~  112 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVG-VGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR  112 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecc-cCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence            344789999999999999999 88865543  2111 12211111 122344  3478899999665       455566


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC---------CCCCc-ccchHHHHHHHHH
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR---------LPPDL-QWTIATQARAYAK  235 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~---------l~~~~-~~~~~~~~~~~~~  235 (283)
                      .++...|.++++.+..|+.---+ .+++..+....-+.+.+++.|.+|...-         .+... +..+.+.+..+.+
T Consensus       113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            77889999999999988752222 2444555444445677899999996311         00000 1111222222222


Q ss_pred             Hc--CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          236 AM--KATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       236 ~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ..  --+++..|...+.|++++...+++.+...
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            22  13677788899999999999999887643

>cd00066 G-alpha G protein alpha subunit

Probab=99.13  E-value=1.1e-09  Score=98.04  Aligned_cols=121  Identities=18%  Similarity=0.233  Sum_probs=81.5

Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh----------hhHHHHHHHHHHHHhH--CCCCceEEEeecCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKW--NQTAIPILIGTKFD  213 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----------~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~D  213 (283)
                      .+.+.+||++|+...+..|..++.+++++|+|+|+++.          ..+.+....++.+-..  ..+.|++|++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46788999999999999999999999999999999874          2344444444444332  23567789999999


Q ss_pred             CCCC----------CCCCcc-cchHHHHHHHHHH-----c-----CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          214 DFVR----------LPPDLQ-WTIATQARAYAKA-----M-----KATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       214 L~~~----------l~~~~~-~~~~~~~~~~~~~-----~-----~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ++.+          .++-.. ....+.+..+...     .     .+-.+.++|.+-.++..+|+.+...++..
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            6321          111111 1123334333322     1     22334599999999999999998888654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK00007 elongation factor G; Reviewed

Probab=99.13  E-value=4.3e-10  Score=110.62  Aligned_cols=111  Identities=16%  Similarity=0.127  Sum_probs=73.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc--Cccc--c---------------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG--NEQE--R---------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~--~~~~--~---------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      -.+|+|+|..++|||||+ +++.  +...  .               ....+..+.....+.+.+  ..+.+.||||...
T Consensus        10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~   87 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVD   87 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHH
Confidence            469999999999999999 9963  2110  0               011122233333444444  5688899999988


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      |.......++.+|++|+|+|....-.-+...-|. .+...  ..|.|++.||+|+.
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~--~~p~iv~vNK~D~~  140 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY--KVPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc--CCCEEEEEECCCCC
Confidence            7666677789999999999987664444433332 33332  34668999999974

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.10  E-value=2.3e-09  Score=96.71  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=59.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCc---
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS---  160 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~---  160 (283)
                      ++|.++|.||||||||+ ++++.... ..+|.++.+.....+.+.+..               ..+.+.|+||....   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999 99888755 677755555555565555432               25899999996432   


Q ss_pred             -ccchhhh---cccCcEEEEEEECC
Q 023335          161 -FDHVPIA---CKDAVAILFMFDLT  181 (283)
Q Consensus       161 -~~~~~~~---~~~ad~iilv~D~~  181 (283)
                       ..+...+   ++++|++++|+|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             2233333   57999999999984

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.08  E-value=5.2e-10  Score=102.92  Aligned_cols=165  Identities=22%  Similarity=0.410  Sum_probs=125.3

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccC
Q 023335           93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA  171 (283)
Q Consensus        93 ~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a  171 (283)
                      .......++|+-|+|..++|||+|+ +|+.+.|.....+.|-.| .+.+.+++....+-+.|.+|..     -..|....
T Consensus        23 tlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wv   96 (749)
T KOG0705|consen   23 TLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWV   96 (749)
T ss_pred             eeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhc
Confidence            3344556899999999999999999 999999985555556555 4566678888888889988832     34577899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhHC-CCCce-EEEeecCCCCCCCCCCcccch-HHHHHHHHHH-cCCcEEEEcCC
Q 023335          172 VAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTI-ATQARAYAKA-MKATLFFSSAT  247 (283)
Q Consensus       172 d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~-ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~e~Sa~  247 (283)
                      |++||||.+.+..+|+.+..+...+..+. ...++ ++++++.-    .+.+..+++ ..+.++++.+ ..+.||++++.
T Consensus        97 davIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~----iS~~~~rv~~da~~r~l~~~~krcsy~et~at  172 (749)
T KOG0705|consen   97 DAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH----ISAKRPRVITDDRARQLSAQMKRCSYYETCAT  172 (749)
T ss_pred             cceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch----hhcccccccchHHHHHHHHhcCccceeecchh
Confidence            99999999999999999988777776553 23344 68888754    333434443 5555555544 46899999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCc
Q 023335          248 HNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +|.++...|+.+...+....
T Consensus       173 yGlnv~rvf~~~~~k~i~~~  192 (749)
T KOG0705|consen  173 YGLNVERVFQEVAQKIVQLR  192 (749)
T ss_pred             hhhhHHHHHHHHHHHHHHHH
Confidence            99999999999998876653

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.07  E-value=1.1e-09  Score=96.15  Aligned_cols=153  Identities=15%  Similarity=0.110  Sum_probs=98.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--c---------c--cccc-------------------eeeeeEEEEEECCe
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--R---------S--LQMA-------------------GLNLINKTLMVQGA  145 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~---------~--~~t~-------------------~~~~~~~~~~~~~~  145 (283)
                      ..++++-+|.---|||||| |++.+.-.  +         .  ..+.                   |+.+..-...+...
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4689999999999999999 99764211  0         0  0111                   22222222233455


Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  225 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~  225 (283)
                      +-++.+-||||+++|....-.-...||+.|+++|+... -++..+ -...|.....-..+||..||+||.+ .+++.-..
T Consensus        85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTr-RHs~I~sLLGIrhvvvAVNKmDLvd-y~e~~F~~  161 (431)
T COG2895          85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTR-RHSFIASLLGIRHVVVAVNKMDLVD-YSEEVFEA  161 (431)
T ss_pred             cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhH-HHHHHHHHhCCcEEEEEEeeecccc-cCHHHHHH
Confidence            67799999999999976655566789999999998432 111111 1122222233445578999999842 11222233


Q ss_pred             hHHHHHHHHHHcCC---cEEEEcCCCCcCHHH
Q 023335          226 IATQARAYAKAMKA---TLFFSSATHNINVNK  254 (283)
Q Consensus       226 ~~~~~~~~~~~~~~---~~~e~Sa~~~~~v~~  254 (283)
                      +..+-..|+.++++   .++.+||..|+||-.
T Consensus       162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         162 IVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            46777888999886   478899999999743

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.04  E-value=4.2e-09  Score=95.54  Aligned_cols=160  Identities=15%  Similarity=0.159  Sum_probs=111.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc--ccccc------------c-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE--QERSL------------Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV  164 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~--~~~~~------------~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~  164 (283)
                      -+|+||-.-.-|||||+ .++...  |.+..            . .-|+.+..|...+..+.+.++|.||||+..|-...
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            47899999999999999 987532  22111            1 23666666666666666889999999999999999


Q ss_pred             hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------c
Q 023335          165 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------M  237 (283)
Q Consensus       165 ~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-------~  237 (283)
                      ...++=.|++++++|+.+..-- ..+..+....  ...-+||+|.||+|    -+..+...+.++...+.-.       +
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl--~~gL~PIVVvNKiD----rp~Arp~~Vvd~vfDLf~~L~A~deQL  158 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMP-QTRFVLKKAL--ALGLKPIVVINKID----RPDARPDEVVDEVFDLFVELGATDEQL  158 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCC-chhhhHHHHH--HcCCCcEEEEeCCC----CCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence            9999999999999999764211 1111122111  23567899999999    4555554555555555444       4


Q ss_pred             CCcEEEEcCCCC----------cCHHHHHHHHHHHHhCCc
Q 023335          238 KATLFFSSATHN----------INVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       238 ~~~~~e~Sa~~~----------~~v~~lf~~l~~~i~~~~  267 (283)
                      .+++++.|+..|          .++.-+|+.|++.+....
T Consensus       159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            567888888765          357888999888875543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.03  E-value=2.2e-09  Score=94.49  Aligned_cols=115  Identities=18%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch-------hh
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PI  166 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~  166 (283)
                      +...++|+++|.+||||||++ ++++....  +..++.+..........+|  ..+.+|||||........       ..
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            345789999999999999999 99987643  3333333222222333444  568899999977542211       11


Q ss_pred             hc--ccCcEEEEEEECCChhhHHHH-HHHHHHHHhHCC---CCceEEEeecCCC
Q 023335          167 AC--KDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQ---TAIPILIGTKFDD  214 (283)
Q Consensus       167 ~~--~~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~---~~~~ilvgnK~DL  214 (283)
                      ++  ...|++++|..++... +... ...++.+.....   -...||+.|+.|.
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~  165 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF  165 (313)
T ss_pred             HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence            22  2689999997655321 2111 234444444322   2345899999996

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.02  E-value=1.1e-09  Score=82.45  Aligned_cols=135  Identities=18%  Similarity=0.213  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchh----hhcccCcEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP----IACKDAVAILF  176 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~ad~iil  176 (283)
                      |++++|..|+|||||. .+.+... -+..|..+++..+           -.+||+|.---...+.    ....++|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh-hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            7899999999999999 7765442 2323443333211           1368998432222221    12468999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~l  255 (283)
                      |-.+++++|.-.     ..+.. ....+.|=|.+|.||    .++   ...+..++|..+-|. ++|++|+.++.||+++
T Consensus        71 v~~and~~s~f~-----p~f~~-~~~k~vIgvVTK~DL----aed---~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l  137 (148)
T COG4917          71 VHAANDPESRFP-----PGFLD-IGVKKVIGVVTKADL----AED---ADISLVKRWLREAGAEPIFETSAVDNQGVEEL  137 (148)
T ss_pred             eecccCccccCC-----ccccc-ccccceEEEEecccc----cch---HhHHHHHHHHHHcCCcceEEEeccCcccHHHH
Confidence            999998865211     00111 113346788999996    221   224566777788887 6889999999999999


Q ss_pred             HHHHHH
Q 023335          256 FKFIMA  261 (283)
Q Consensus       256 f~~l~~  261 (283)
                      ++.|..
T Consensus       138 ~~~L~~  143 (148)
T COG4917         138 VDYLAS  143 (148)
T ss_pred             HHHHHh
Confidence            998864

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.96  E-value=1.3e-08  Score=87.96  Aligned_cols=115  Identities=19%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc--c-c-------
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--D-H-------  163 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~-~-------  163 (283)
                      ....++|+|+|.+|||||||+ .+++....  ...+.............++  ..+.+|||||-....  . .       
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            344789999999999999999 99887643  3333222222222333444  457899999976542  1 1       


Q ss_pred             hhhhcc--cCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCC---CCceEEEeecCCC
Q 023335          164 VPIACK--DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQ---TAIPILIGTKFDD  214 (283)
Q Consensus       164 ~~~~~~--~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL  214 (283)
                      ...|+.  ..|++++|..++.. .+..+ ...++.+.....   -...++|.||+|.
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~  161 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAAS  161 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence            122332  57888888766543 22222 234444444322   2346899999997

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.94  E-value=7.1e-09  Score=92.81  Aligned_cols=106  Identities=12%  Similarity=0.043  Sum_probs=65.0

Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  225 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~  225 (283)
                      .+.+.|.||+|...-...   ....+|.++++.+....+.++.+.   ..+...    .-|+|.||+|+   .+......
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~----aDIiVVNKaDl---~~~~~a~~  214 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL----ADLIVINKADG---DNKTAARR  214 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh----hheEEeehhcc---cchhHHHH
Confidence            356788999996642222   456799999997644444443332   112111    12899999997   22211111


Q ss_pred             hHHHHHHHHHH-------cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          226 IATQARAYAKA-------MKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       226 ~~~~~~~~~~~-------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ...+.+.....       +..+++.+||+++.||+++++.|.+.+-
T Consensus       215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22333332222       2257899999999999999999998653

>cd01900 YchF YchF subfamily

Probab=98.91  E-value=7.1e-09  Score=90.48  Aligned_cols=79  Identities=14%  Similarity=0.144  Sum_probs=57.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCc----c
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS----F  161 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~----~  161 (283)
                      |.++|.||||||||+ ++++.... ..+|.++.+.....+.+.+..               ..++++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            578999999999999 99888766 677766656555666665532               25899999995432    2


Q ss_pred             cchhhh---cccCcEEEEEEECC
Q 023335          162 DHVPIA---CKDAVAILFMFDLT  181 (283)
Q Consensus       162 ~~~~~~---~~~ad~iilv~D~~  181 (283)
                      .+...|   ++++|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            233334   46899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.91  E-value=1.1e-08  Score=101.36  Aligned_cols=112  Identities=13%  Similarity=0.132  Sum_probs=74.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--c----------ccc---cceeeeeEE----EEEECCeEEEEEEEeCCCCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--R----------SLQ---MAGLNLINK----TLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~----------~~~---t~~~~~~~~----~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      -.+|+++|..++|||||+ +++...-.  .          ..+   ..|++....    ...+++....+.++||||+.+
T Consensus        20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d   99 (731)
T PRK07560         20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD   99 (731)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence            457999999999999999 88742211  0          000   011211111    122355578899999999999


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      |.......++.+|++|+|+|....-.-+...-|... ...  ..|+|++.||+|+
T Consensus       100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~--~~~~iv~iNK~D~  151 (731)
T PRK07560        100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE--RVKPVLFINKVDR  151 (731)
T ss_pred             hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc--CCCeEEEEECchh
Confidence            988888889999999999998875433333334332 222  3466899999996

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.90  E-value=2.2e-08  Score=84.28  Aligned_cols=101  Identities=11%  Similarity=0.046  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      ..+.+.||.|.-...   ..+....+..+.|+|+++.+....  .. ..+    ...+.++++||+|+.   +.. . ..
T Consensus       103 ~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~----~~~a~iiv~NK~Dl~---~~~-~-~~  167 (207)
T TIGR00073       103 IDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--KY-PGM----FKEADLIVINKADLA---EAV-G-FD  167 (207)
T ss_pred             CCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--hh-HhH----HhhCCEEEEEHHHcc---ccc-h-hh
Confidence            345667777721100   111123455667888876543111  10 111    123558999999972   111 1 11


Q ss_pred             HHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          227 ATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       227 ~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      .++..+..++.  ..+++++||++|.|++++|+++.+.
T Consensus       168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            22333333333  3789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01855 YqeH YqeH

Probab=98.90  E-value=5.5e-09  Score=86.62  Aligned_cols=94  Identities=15%  Similarity=0.199  Sum_probs=64.5

Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----  234 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----  234 (283)
                      +..+...+++++|++++|+|+++...     .|...+.....+.++++|+||+|+   .+..   ...+....+.     
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl---~~~~---~~~~~~~~~~~~~~~   92 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDL---LPKD---KNLVRIKNWLRAKAA   92 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhc---CCCC---CCHHHHHHHHHHHHH
Confidence            46677889999999999999987642     233333323345677899999997   2221   1122233333     


Q ss_pred             HHcCC---cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          235 KAMKA---TLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       235 ~~~~~---~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      +..+.   .++++||++|.|++++++.|.+.+.
T Consensus        93 ~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          93 AGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             hhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            23333   5889999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=8e-09  Score=98.11  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=101.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccc----cceeeeeEEE----------------EEECCeEEEEEEE
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ----MAGLNLINKT----------------LMVQGARIAFSIW  152 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~----t~~~~~~~~~----------------~~~~~~~~~l~i~  152 (283)
                      ....+..=|+|+|.-..|||-|+ .+-+.... ...-    .+|.+|....                +.++    -+.++
T Consensus       470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP----g~lvI  545 (1064)
T KOG1144|consen  470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP----GLLVI  545 (1064)
T ss_pred             chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC----eeEEe
Confidence            34555667999999999999999 88765444 2221    2343333211                1222    26789


Q ss_pred             eCCCCCCcccchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch---
Q 023335          153 DVGGDSRSFDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI---  226 (283)
Q Consensus       153 Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~---  226 (283)
                      ||+|++.|..+......-||.+|+|+|+..   +.+.+++.    .++.  .+.|.||+.||+|..-.........+   
T Consensus       546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~  619 (1064)
T KOG1144|consen  546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEA  619 (1064)
T ss_pred             cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHHh--cCCCeEEeehhhhhhcccccCCCchHHHH
Confidence            999999999999999999999999999975   34444432    2222  25566899999996221111110000   


Q ss_pred             ----------------HHHHHHHHHH-cC-------------CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          227 ----------------ATQARAYAKA-MK-------------ATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       227 ----------------~~~~~~~~~~-~~-------------~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                                      ...+.+|+++ ++             +.++.+||.+|+||.+|+.+|++..
T Consensus       620 lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt  686 (1064)
T KOG1144|consen  620 LKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT  686 (1064)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence                            1112223321 11             2356799999999999999988754

>cd01882 BMS1 Bms1

Probab=98.88  E-value=2.4e-08  Score=85.18  Aligned_cols=137  Identities=16%  Similarity=0.195  Sum_probs=79.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ...|+++|.+|+|||||+ .+++..-.. .....|. +   .+ .......+.++||+|..  ..+ -...+.+|+++++
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv  110 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL  110 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence            578999999999999999 887642211 1111121 1   11 11234567889999853  222 2345889999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCc-ccchHHHHHH-HHHH--cCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARA-YAKA--MKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~-~~~~~~~~~~-~~~~--~~~~~~e~Sa~~~~  250 (283)
                      +|.+....... ..++..+...  ..|. |+|.||.|+   +.+.. .....+++++ +...  .+.+++.+||++.-
T Consensus       111 iDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~---~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         111 IDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDL---FKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEecccc---CCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99976443222 2333333332  2344 469999997   32211 1122333433 3322  24588999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.85  E-value=4.2e-08  Score=82.87  Aligned_cols=160  Identities=17%  Similarity=0.113  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-ccc--ccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chh---
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVP---  165 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~---  165 (283)
                      ++|+++|..|+||||++ .+++.... ...  .............++|..  +.++||||-.....        +..   
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999 88877654 221  122223333444677755  67899999432111        111   


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCC---CceEEEeecCCCCCCCCCCcc-cchH----HHHHHHHHHc
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT---AIPILIGTKFDDFVRLPPDLQ-WTIA----TQARAYAKAM  237 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~ilvgnK~DL~~~l~~~~~-~~~~----~~~~~~~~~~  237 (283)
                      ....+.+++|||+.++ +-+-++. ..++.+.+....   .-.|||.|..|.   +.+... ....    ..++++.+..
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~---~~~~~~~~~l~~~~~~~l~~li~~c  153 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADE---LEDDSLEDYLKKESNEALQELIEKC  153 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGG---GTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHccHHHHhHhhHHhhhccc---cccccHHHHHhccCchhHhHHhhhc
Confidence            1235689999999988 3232222 223333333222   234788888884   332221 1111    3356777777


Q ss_pred             CCcEEEEcCC------CCcCHHHHHHHHHHHHhCCc
Q 023335          238 KATLFFSSAT------HNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       238 ~~~~~e~Sa~------~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +-.|+..+.+      ....+.+||+.+-+.+.++.
T Consensus       154 ~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  154 GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8788887766      33457888888777665554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=7.9e-08  Score=85.82  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC----------------eEEEEEEEeCCCC----
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG----------------ARIAFSIWDVGGD----  157 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~----------------~~~~l~i~Dt~G~----  157 (283)
                      .+++-|+|.||||||||. .++..... .+||..+++.....+.+..                ....+.+.|++|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999 99888865 8899665555555554421                1356899999874    


Q ss_pred             CCcccchhhhc---ccCcEEEEEEECC
Q 023335          158 SRSFDHVPIAC---KDAVAILFMFDLT  181 (283)
Q Consensus       158 ~~~~~~~~~~~---~~ad~iilv~D~~  181 (283)
                      ++...+...|+   +++|+++.|+|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            45566777664   8999999999876

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.84  E-value=9.6e-08  Score=80.55  Aligned_cols=151  Identities=18%  Similarity=0.237  Sum_probs=104.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc----c---chhhhccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----D---HVPIACKD  170 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~---~~~~~~~~  170 (283)
                      .-+|+++|.|.||||||+ .+...... ..|..+........+.++|..  +++.|.||.-...    .   ..-...+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence            468999999999999999 88877766 777877777778888888876  6779999853321    1   12234588


Q ss_pred             CcEEEEEEECCChhhHHHH-HHHHHHHHh----HCCC-------------------------------------------
Q 023335          171 AVAILFMFDLTSRCTLNSI-VGWYSEARK----WNQT-------------------------------------------  202 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~-~~~~~~i~~----~~~~-------------------------------------------  202 (283)
                      ||.++.|.|.+..+.-..+ .+-++.+--    ..|+                                           
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            9999999999875433221 222222110    0000                                           


Q ss_pred             ----------------C---ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          203 ----------------A---IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       203 ----------------~---~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                                      .   +.+-|.||+|-          +..++..++|++-+  -+-+|+..+-|++.+++.+.+.+
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~----------vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ----------VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccce----------ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHh
Confidence                            0   12467788882          44678888888755  46678888899999999999877


Q ss_pred             h
Q 023335          264 F  264 (283)
Q Consensus       264 ~  264 (283)
                      -
T Consensus       288 ~  288 (364)
T KOG1486|consen  288 N  288 (364)
T ss_pred             c
Confidence            4

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.81  E-value=1.1e-08  Score=93.29  Aligned_cols=98  Identities=16%  Similarity=0.234  Sum_probs=72.2

Q ss_pred             CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-cchHHHHHHHHH
Q 023335          157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYAK  235 (283)
Q Consensus       157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~~  235 (283)
                      ++.|..+...+++.++++++|+|+.+..     ..|.+++.++..+.++++|+||+||   ++.... ....+..+++++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DL---l~k~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDL---LPKSVNLSKIKEWMKKRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhh---CCCCCCHHHHHHHHHHHHH
Confidence            4567778888889999999999997654     3466677666556677899999998   332211 112333445567


Q ss_pred             HcCC---cEEEEcCCCCcCHHHHHHHHHHH
Q 023335          236 AMKA---TLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       236 ~~~~---~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      ..++   .++++||++|.|++++|+.+.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            7776   48899999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.78  E-value=1.8e-08  Score=101.14  Aligned_cols=112  Identities=15%  Similarity=0.190  Sum_probs=75.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--c----------ccc---cceeeeeE--EEEEE--------------CCeEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--R----------SLQ---MAGLNLIN--KTLMV--------------QGARI  147 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~----------~~~---t~~~~~~~--~~~~~--------------~~~~~  147 (283)
                      -.+|+|+|..++|||||+ +++...-.  .          ..+   ..|..+..  ..+.+              ++..+
T Consensus        19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (843)
T PLN00116         19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY   98 (843)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence            468999999999999999 98753311  0          000   01222221  12222              22357


Q ss_pred             EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      .++++||||+..|.......++.+|++|+|+|+.+.-......-|.....   .+.|.|++.||+|+
T Consensus        99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~---~~~p~i~~iNK~D~  162 (843)
T PLN00116         99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDR  162 (843)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH---CCCCEEEEEECCcc
Confidence            78999999999998888888899999999999987644443333433322   24566899999996

>PTZ00416 elongation factor 2; Provisional

Probab=98.77  E-value=2.1e-08  Score=100.44  Aligned_cols=112  Identities=15%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--ccc----------c---cceeeee--EEEEEEC--------CeEEEEEEEe
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSL----------Q---MAGLNLI--NKTLMVQ--------GARIAFSIWD  153 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~----------~---t~~~~~~--~~~~~~~--------~~~~~l~i~D  153 (283)
                      ..+|+++|..++|||||+ +++...-.  ...          +   ..|....  ...+.++        +....+.+.|
T Consensus        19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD   98 (836)
T PTZ00416         19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID   98 (836)
T ss_pred             cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence            458999999999999999 98753211  000          0   0122211  1222332        2256789999


Q ss_pred             CCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       154 t~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      |||+.+|.......++.+|++|+|+|+.+.-.-+.-.-| ..+...  +.|.|++.||+|+
T Consensus        99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~  156 (836)
T PTZ00416         99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDR  156 (836)
T ss_pred             CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhh
Confidence            999999887778888999999999999875433332223 333332  3567899999996

>PRK12289 GTPase RsgA; Reviewed

Probab=98.75  E-value=6e-08  Score=87.72  Aligned_cols=92  Identities=15%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             ccchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA  239 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~  239 (283)
                      ..+.+..+.++|.+++|+|++++. +...+..|+..+.  ..+.++|||+||+||   .++.   . .+...+..+.+++
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~--~~~ip~ILVlNK~DL---v~~~---~-~~~~~~~~~~~g~  150 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE--STGLEIVLCLNKADL---VSPT---E-QQQWQDRLQQWGY  150 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH--HCCCCEEEEEEchhc---CChH---H-HHHHHHHHHhcCC
Confidence            345556689999999999999876 4556678877663  345778999999997   2211   1 1222333356788


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHH
Q 023335          240 TLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      .++.+||+++.|++++++.+..
T Consensus       151 ~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        151 QPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             eEEEEEcCCCCCHHHHhhhhcc
Confidence            8999999999999999998864

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.75  E-value=3.7e-09  Score=90.74  Aligned_cols=113  Identities=11%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             EEEEEeCCCCCCcccchhhhc--------ccCcEEEEEEECCChhhHH-HHHHHHHHHHhH-CCCCceEEEeecCCCCCC
Q 023335          148 AFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLTSRCTLN-SIVGWYSEARKW-NQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~~~~~~~~--------~~ad~iilv~D~~~~~s~~-~~~~~~~~i~~~-~~~~~~ilvgnK~DL~~~  217 (283)
                      .+.++|||||.++...+....        ...-++++++|.....+-. .+..++..+... .-+.|.|.|.||+||   
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl---  168 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL---  168 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG---
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc---
Confidence            578899999988644433222        3445888899976443311 122333322221 235577899999997   


Q ss_pred             CCCCccc--------------------chHHHHHHHHHHcCC--cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          218 LPPDLQW--------------------TIATQARAYAKAMKA--TLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       218 l~~~~~~--------------------~~~~~~~~~~~~~~~--~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +++....                    ...+++.++...++.  .++.+|+++++++++++..+-+.+
T Consensus       169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            3211000                    001111112222333  588899999999999998876543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.74  E-value=5.2e-08  Score=86.54  Aligned_cols=86  Identities=14%  Similarity=0.136  Sum_probs=64.4

Q ss_pred             hcccCcEEEEEEECCChhhHHH-HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335          167 ACKDAVAILFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                      ...++|++++|+|+++++++.. +..|+..+..  .+.|+++|+||+||.   . +  ....++..+..+..+.+++++|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~---~-~--~~~~~~~~~~~~~~g~~v~~vS  148 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL---D-D--LEEARELLALYRAIGYDVLELS  148 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC---C-C--HHHHHHHHHHHHHCCCeEEEEe
Confidence            3589999999999998876555 4678777654  356779999999972   1 1  1122334455566788999999


Q ss_pred             CCCCcCHHHHHHHHH
Q 023335          246 ATHNINVNKIFKFIM  260 (283)
Q Consensus       246 a~~~~~v~~lf~~l~  260 (283)
                      |+++.|++++++.+.
T Consensus       149 A~~g~gi~~L~~~l~  163 (298)
T PRK00098        149 AKEGEGLDELKPLLA  163 (298)
T ss_pred             CCCCccHHHHHhhcc
Confidence            999999999998764

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=1.7e-07  Score=87.43  Aligned_cols=156  Identities=15%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcC--------------------cccccc----------ccceeeeeEEEEEECCe
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGN--------------------EQERSL----------QMAGLNLINKTLMVQGA  145 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~--------------------~~~~~~----------~t~~~~~~~~~~~~~~~  145 (283)
                      +...+.++++|.-.+|||||+ +++..                    +..-.|          .-.|+....++..++..
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            345789999999999999999 87542                    111000          11255555666667777


Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHH-------HHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS-------IVGWYSEARKWNQTAIPILIGTKFDDFVRL  218 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~-------~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l  218 (283)
                      ...+.+.|.||+..|..-.-.-...||+.+||+|++.. .|+.       .++...-++. ..-.-.||+.||.|+.. .
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~-Lgi~qlivaiNKmD~V~-W  330 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRS-LGISQLIVAINKMDLVS-W  330 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHH-cCcceEEEEeecccccC-c
Confidence            78899999999887776666666889999999998743 2332       1222222222 22334478999999732 2


Q ss_pred             CCCcccchHHHHHHHH-HHcC-----CcEEEEcCCCCcCHHHH
Q 023335          219 PPDLQWTIATQARAYA-KAMK-----ATLFFSSATHNINVNKI  255 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~-~~~~-----~~~~e~Sa~~~~~v~~l  255 (283)
                      +.++-..+...+..|. +..|     +.|+.||+.+|+|+...
T Consensus       331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            2333334466677777 4444     46899999999997654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.72  E-value=1.5e-07  Score=83.64  Aligned_cols=105  Identities=11%  Similarity=0.002  Sum_probs=61.3

Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  225 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~  225 (283)
                      .+.+.|.||+|.-...   ......+|.++++-+.   .+-+++......+.    +.+.++|.||+|+.   .......
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~----~~~~ivv~NK~Dl~---~~~~~~~  192 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGLM----EIADIYVVNKADGE---GATNVTI  192 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHHh----hhccEEEEEccccc---chhHHHH
Confidence            4667889999843211   1245677888887443   33344443333332    34558999999962   2111111


Q ss_pred             hHHH----HHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          226 IATQ----ARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       226 ~~~~----~~~~~~~---~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ....    ...+.+.   +..+++.+||+++.|++++++++.+..
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            1111    1111111   224689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.71  E-value=1.9e-07  Score=82.05  Aligned_cols=140  Identities=16%  Similarity=0.236  Sum_probs=79.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cc--c--------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc----
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RS--L--------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----  163 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~--~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----  163 (283)
                      .++|+|+|..|+|||||| .+++.... ..  .        .+..+......+.-++..+.+.++||+|-......    
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            689999999999999999 98876554 21  1        12233333334445788899999999983211000    


Q ss_pred             ----------hhhh-------------cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          164 ----------VPIA-------------CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       164 ----------~~~~-------------~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                                ...+             =.+.|++|++.+.+... +..+.  ++.+++......+|-|..|+|.   +..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~D--i~~mk~Ls~~vNvIPvIaKaD~---lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLD--IEFMKRLSKRVNVIPVIAKADT---LTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHH--HHHHHHHTTTSEEEEEESTGGG---S-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHH--HHHHHHhcccccEEeEEecccc---cCH
Confidence                      0001             13568999999876531 22211  2334444545566889999997   555


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEc
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                      ++.....+.+.+-.+.+++.+|...
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHHcCceeeccc
Confidence            4444446667777778888766533

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=5.4e-08  Score=84.75  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc---cccc---cceeeeeEE------------EE------EEC----CeEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE---RSLQ---MAGLNLINK------------TL------MVQ----GARIAF  149 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~---~~~~---t~~~~~~~~------------~~------~~~----~~~~~l  149 (283)
                      .+++|-++|.-.-|||||. .+.+---.   +...   |+..-|...            .+      ...    ...-.+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            4789999999999999999 77542111   1000   000000000            00      000    112457


Q ss_pred             EEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHH
Q 023335          150 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ  229 (283)
Q Consensus       150 ~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~  229 (283)
                      .|.|.||+|-.....-+-..-.|+.+||+..+.+..--...+.+-.+.-. .-+.+|++-||+||   ...++..+..++
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDl---V~~E~AlE~y~q  164 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDL---VSRERALENYEQ  164 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccce---ecHHHHHHHHHH
Confidence            88999998864332222223458999999998765444434434333322 23456799999998   444444445677


Q ss_pred             HHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          230 ARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       230 ~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +++|.+.-   +.+++.+||..+.||+-+++.|.+.+...+
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence            77777653   678999999999999999999999886544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.68  E-value=1.1e-07  Score=83.94  Aligned_cols=88  Identities=13%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             hhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335          165 PIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  243 (283)
Q Consensus       165 ~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e  243 (283)
                      ...+.++|.+++|+|++++. ++..+.+|+..+..  .+.++++|+||+||   .++   . .......+....+.++++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL---~~~---~-~~~~~~~~~~~~g~~v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADL---LDD---E-EEELELVEALALGYPVLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHC---CCh---H-HHHHHHHHHHhCCCeEEE
Confidence            34578999999999999988 88888899887765  35678999999997   221   1 112223334557889999


Q ss_pred             EcCCCCcCHHHHHHHHHH
Q 023335          244 SSATHNINVNKIFKFIMA  261 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~  261 (283)
                      +||+++.|+++++..+..
T Consensus       144 vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         144 VSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EECCCCccHHHHHhhhcc
Confidence            999999999999988763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=4.5e-07  Score=79.77  Aligned_cols=159  Identities=18%  Similarity=0.263  Sum_probs=96.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC----ccc-ccccc-ce--eeeeEEEEEE-------CCeEEEEEEEeCCCCCCccc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN----EQE-RSLQM-AG--LNLINKTLMV-------QGARIAFSIWDVGGDSRSFD  162 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~----~~~-~~~~t-~~--~~~~~~~~~~-------~~~~~~l~i~Dt~G~~~~~~  162 (283)
                      ..+++-++|.-.+|||+|. ++..-    .|. ...++ .|  .|..-..+.+       .++.+.+.+.|+||+..   
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---   82 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---   82 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence            3589999999999999999 77432    233 11111 12  2211112222       36678899999999764   


Q ss_pred             chhhhc---ccCcEEEEEEECCChhhHHHHHH-HHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc-hHHHHHHHHHHc
Q 023335          163 HVPIAC---KDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT-IATQARAYAKAM  237 (283)
Q Consensus       163 ~~~~~~---~~ad~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~-~~~~~~~~~~~~  237 (283)
                      +.+..+   .-.|..++|+|+.....-+.... .+-++.    ....|+|.||+|+   +++..+.. +.+...+..+.+
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~---lpE~qr~ski~k~~kk~~KtL  155 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDV---LPENQRASKIEKSAKKVRKTL  155 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEecccc---ccchhhhhHHHHHHHHHHHHH
Confidence            344443   34478899999975432222221 122221    2345788899997   56543322 244444444433


Q ss_pred             -------CCcEEEEcCCCC----cCHHHHHHHHHHHHhCCc
Q 023335          238 -------KATLFFSSATHN----INVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       238 -------~~~~~e~Sa~~~----~~v~~lf~~l~~~i~~~~  267 (283)
                             +.+++++||+.|    +++.++.+.|...+++..
T Consensus       156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~  196 (522)
T KOG0461|consen  156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK  196 (522)
T ss_pred             HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence                   268999999999    788888888888877643

>cd01859 MJ1464 MJ1464

Probab=98.67  E-value=7.8e-08  Score=77.08  Aligned_cols=95  Identities=12%  Similarity=0.005  Sum_probs=63.1

Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT  240 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~  240 (283)
                      +.+.++.++++|++++|+|++++....+ ..+...+.  ..+.|+++|+||+|+   .+.   .. .+....+.+..+.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~--~~~~p~iiv~NK~Dl---~~~---~~-~~~~~~~~~~~~~~   72 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL--ELGKKLLIVLNKADL---VPK---EV-LEKWKSIKESEGIP   72 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH--hCCCcEEEEEEhHHh---CCH---HH-HHHHHHHHHhCCCc
Confidence            3456777889999999999987643222 12222222  124577899999996   221   11 11222344456678


Q ss_pred             EEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          241 LFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       241 ~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ++.+||+++.|++++++.+.+.+..
T Consensus        73 ~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          73 VVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEEEEccccccHHHHHHHHHHHHhh
Confidence            9999999999999999999887643

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.64  E-value=9e-07  Score=84.65  Aligned_cols=181  Identities=15%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             HHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcccccccccCCCCCCCCCCcccccccccccc
Q 023335            7 EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSR   86 (283)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~   86 (283)
                      +..+++-.+=.|..+.=-|-+..++-.+..|.+-|+-.    +.++.++. .+.    ....     -..+.        
T Consensus        48 ~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~l----~~~~~~~~-~~s----~d~a-----~~~a~--------  105 (763)
T TIGR00993        48 EKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLGL----LAGRQGGG-AFS----LDAA-----KAMAE--------  105 (763)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHH----hhccCccc-ccc----chhh-----HHHHh--------
Confidence            44456666666777777788888888888888877552    22332211 100    0000     00000        


Q ss_pred             ccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCc-cc-ccc-c-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335           87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QE-RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus        87 ~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~-~~-~~~-~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  161 (283)
                       .........-...++|+|+|.+||||||++ .+++.. +. ... + |+..  ......+++  ..+.++||||-....
T Consensus       106 -~~ea~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt~  180 (763)
T TIGR00993       106 -QLEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSSA  180 (763)
T ss_pred             -hhhhhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCccc
Confidence             000001111234689999999999999999 999876 33 322 2 3322  122223444  457889999966431


Q ss_pred             c-------c---hhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCC---ceEEEeecCCC
Q 023335          162 D-------H---VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA---IPILIGTKFDD  214 (283)
Q Consensus       162 ~-------~---~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~ilvgnK~DL  214 (283)
                      .       +   ...++.  ..|++|+|..++.......-..+++.+.......   -.|||.|+.|.
T Consensus       181 ~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~  248 (763)
T TIGR00993       181 SDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS  248 (763)
T ss_pred             cchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence            1       1   112333  5799999998864433222235666666654433   34899999997

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.64  E-value=1.4e-06  Score=79.27  Aligned_cols=154  Identities=10%  Similarity=0.109  Sum_probs=93.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC----ccc-------------cccc-----cceeee---eEEEEE-ECCeEEEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN----EQE-------------RSLQ-----MAGLNL---INKTLM-VQGARIAFSIW  152 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~----~~~-------------~~~~-----t~~~~~---~~~~~~-~~~~~~~l~i~  152 (283)
                      .+.|.|+|+.++|||||+ +|.+.    ...             ++.+     |+..-|   ....+. .++.+..+.+.
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            688999999999999999 99876    222             1111     111222   111222 24566778899


Q ss_pred             eCCCCCCc--------cc--c-------------------hhhhcc-cCcEEEEEE-ECC----ChhhHHHH-HHHHHHH
Q 023335          153 DVGGDSRS--------FD--H-------------------VPIACK-DAVAILFMF-DLT----SRCTLNSI-VGWYSEA  196 (283)
Q Consensus       153 Dt~G~~~~--------~~--~-------------------~~~~~~-~ad~iilv~-D~~----~~~s~~~~-~~~~~~i  196 (283)
                      ||+|-..-        ..  +                   .+..+. ++++.|+|. |.+    .++.+... ..|++++
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            99983211        11  0                   223445 899999988 764    22334444 4788887


Q ss_pred             HhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC--CCcCHHHHHHHHHHH
Q 023335          197 RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT--HNINVNKIFKFIMAK  262 (283)
Q Consensus       197 ~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~--~~~~v~~lf~~l~~~  262 (283)
                      ++.  +.|.|+|.||.|-      . .....+...++..+++++++.+|+.  +.+.|..+|+.++..
T Consensus       177 k~~--~kPfiivlN~~dp------~-~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHP------Y-HPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE  235 (492)
T ss_pred             Hhc--CCCEEEEEECcCC------C-CchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence            764  4566899999992      1 1123344556677789998887775  344566666555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.64  E-value=2.5e-07  Score=74.81  Aligned_cols=62  Identities=13%  Similarity=0.046  Sum_probs=43.1

Q ss_pred             EEEEeCCCCCC----cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecC
Q 023335          149 FSIWDVGGDSR----SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF  212 (283)
Q Consensus       149 l~i~Dt~G~~~----~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~  212 (283)
                      +.|+||||-..    ...+...|+..+|++|+|.+.++..+-.+...|.+......  ...|+|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~--~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK--SRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC--SSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC--CeEEEEEcCC
Confidence            78899999633    23567778899999999999998665555555555544332  2367888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK12288 GTPase RsgA; Reviewed

Probab=98.62  E-value=2.9e-07  Score=83.27  Aligned_cols=88  Identities=10%  Similarity=0.128  Sum_probs=66.7

Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      ..++|.+++|++++...++..+..|+..+..  .+.+++||+||+||   .++.. .....+..+..+..+.+++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL---~~~~~-~~~~~~~~~~y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDL---LDDEG-RAFVNEQLDIYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccC---CCcHH-HHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3579999999999988899999999876543  35677999999997   33221 111223333445678899999999


Q ss_pred             CCcCHHHHHHHHHH
Q 023335          248 HNINVNKIFKFIMA  261 (283)
Q Consensus       248 ~~~~v~~lf~~l~~  261 (283)
                      ++.|++++++.|..
T Consensus       192 tg~GideL~~~L~~  205 (347)
T PRK12288        192 TGEGLEELEAALTG  205 (347)
T ss_pred             CCcCHHHHHHHHhh
Confidence            99999999998865

>smart00275 G_alpha G protein alpha subunit

Probab=98.61  E-value=7.3e-07  Score=80.63  Aligned_cols=134  Identities=18%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh----------hhHHHHHHHHHHHHh
Q 023335          129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARK  198 (283)
Q Consensus       129 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----------~s~~~~~~~~~~i~~  198 (283)
                      +|+|+..  ..+.+++  +.+.+||++|+...+..|..++.+++++|+|+|+++.          ..+++....++.+..
T Consensus       170 ~T~Gi~~--~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~  245 (342)
T smart00275      170 PTTGIQE--TAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN  245 (342)
T ss_pred             CccceEE--EEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence            4555543  2444444  5678999999999999999999999999999999973          234444444455443


Q ss_pred             H--CCCCceEEEeecCCCCCC----------CCCCcccchHHHHHHHHHH-----cC------CcEEEEcCCCCcCHHHH
Q 023335          199 W--NQTAIPILIGTKFDDFVR----------LPPDLQWTIATQARAYAKA-----MK------ATLFFSSATHNINVNKI  255 (283)
Q Consensus       199 ~--~~~~~~ilvgnK~DL~~~----------l~~~~~~~~~~~~~~~~~~-----~~------~~~~e~Sa~~~~~v~~l  255 (283)
                      .  ..+.|++|++||.|++.+          +++-......+.+.++...     ..      +-.+.++|.+-.++..+
T Consensus       246 ~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v  325 (342)
T smart00275      246 SRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVV  325 (342)
T ss_pred             CccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHH
Confidence            2  235677899999997321          1111111123333333221     11      22345899999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |+.+...++..
T Consensus       326 ~~~v~~~I~~~  336 (342)
T smart00275      326 FDAVKDIILQR  336 (342)
T ss_pred             HHHHHHHHHHH
Confidence            99988877654

Subunit of G proteins that contains the guanine nucleotide binding site

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=3.7e-07  Score=82.86  Aligned_cols=151  Identities=15%  Similarity=0.106  Sum_probs=96.4

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      |...|.---|||||+ .+.+..-.  ....--|.+........+-.+..+.|.|.+|.+++-...-..+...|..+||+|
T Consensus         3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~   82 (447)
T COG3276           3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVA   82 (447)
T ss_pred             EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEe
Confidence            566777788999999 87766544  222222333333333444444578999999999876555555678899999999


Q ss_pred             CCCh---hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH---HcCCcEEEEcCCCCcCHH
Q 023335          180 LTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK---AMKATLFFSSATHNINVN  253 (283)
Q Consensus       180 ~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~---~~~~~~~e~Sa~~~~~v~  253 (283)
                      .++.   ++.+.+    .-+.. ....-.++|.||+|+   ..+.   .+.+..+++..   .-.+++|.+|+++|+||+
T Consensus        83 ~deGl~~qtgEhL----~iLdl-lgi~~giivltk~D~---~d~~---r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~  151 (447)
T COG3276          83 ADEGLMAQTGEHL----LILDL-LGIKNGIIVLTKADR---VDEA---RIEQKIKQILADLSLANAKIFKTSAKTGRGIE  151 (447)
T ss_pred             CccCcchhhHHHH----HHHHh-cCCCceEEEEecccc---ccHH---HHHHHHHHHHhhcccccccccccccccCCCHH
Confidence            9653   333332    22222 223344899999996   2211   12222222222   224578999999999999


Q ss_pred             HHHHHHHHHHh
Q 023335          254 KIFKFIMAKLF  264 (283)
Q Consensus       254 ~lf~~l~~~i~  264 (283)
                      ++.+.|.+..-
T Consensus       152 ~Lk~~l~~L~~  162 (447)
T COG3276         152 ELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHhhh
Confidence            99999988774

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.58  E-value=5.5e-07  Score=73.53  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=50.3

Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHCCC--CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEEcC
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFSSA  246 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa  246 (283)
                      .+.-|+|+|++..+-.         -++-.|.  .--++|.||.||.....     ...+...+-+++.  +.+++++|+
T Consensus       118 d~~~v~VidvteGe~~---------P~K~gP~i~~aDllVInK~DLa~~v~-----~dlevm~~da~~~np~~~ii~~n~  183 (202)
T COG0378         118 DHLRVVVIDVTEGEDI---------PRKGGPGIFKADLLVINKTDLAPYVG-----ADLEVMARDAKEVNPEAPIIFTNL  183 (202)
T ss_pred             hceEEEEEECCCCCCC---------cccCCCceeEeeEEEEehHHhHHHhC-----ccHHHHHHHHHHhCCCCCEEEEeC
Confidence            3478889998876421         0110111  11279999999832221     1134444445554  478999999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q 023335          247 THNINVNKIFKFIMAKL  263 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i  263 (283)
                      ++|+|++++++++....
T Consensus       184 ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         184 KTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CCCcCHHHHHHHHHhhc
Confidence            99999999999987654

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.55  E-value=5.2e-07  Score=77.15  Aligned_cols=117  Identities=11%  Similarity=0.058  Sum_probs=60.8

Q ss_pred             EEEEEEEeCCCCCC-cc-----cchhhhcc--cCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          146 RIAFSIWDVGGDSR-SF-----DHVPIACK--DAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~-~~-----~~~~~~~~--~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      .....+.|||||-+ |.     .+....+.  .--++++++|...   +.+|-.- -+|..-.-+.-+-|.|+|.||+|+
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSN-MlYAcSilyktklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSN-MLYACSILYKTKLPFIVVFNKTDV  193 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHH-HHHHHHHHHhccCCeEEEEecccc
Confidence            35578899999864 21     12212222  3346777777643   3333221 112211122334555899999996


Q ss_pred             CCCCCCCcccch-HHHHHHHHH------------H---------cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          215 FVRLPPDLQWTI-ATQARAYAK------------A---------MKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       215 ~~~l~~~~~~~~-~~~~~~~~~------------~---------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ...-- ...+.. .+.-++-.+            .         .++..+-+|+.+|.|.+++|..+-+.+-
T Consensus       194 ~d~~f-a~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  194 SDSEF-ALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             cccHH-HHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            21100 001111 111111111            0         1355778999999999999999877653

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.55  E-value=8e-07  Score=79.47  Aligned_cols=122  Identities=20%  Similarity=0.264  Sum_probs=79.6

Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhH-------HHHH---HHHHHHHhH--CCCCceEEEeecCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL-------NSIV---GWYSEARKW--NQTAIPILIGTKFD  213 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~-------~~~~---~~~~~i~~~--~~~~~~ilvgnK~D  213 (283)
                      ...+.++|++||..-+.-|.+++.+++++|||.++++.+..       +.+.   .+.+.|-..  -.+..+||..||.|
T Consensus       194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D  273 (354)
T KOG0082|consen  194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD  273 (354)
T ss_pred             CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence            36688899999988888899999999999999999864321       1222   333344332  23567789999999


Q ss_pred             CCCC----------CCCCcccchHHHHHHHHHH--------c--CCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          214 DFVR----------LPPDLQWTIATQARAYAKA--------M--KATLFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       214 L~~~----------l~~~~~~~~~~~~~~~~~~--------~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      |+..          +++-......+++..+.+.        .  .+-+..+.|.+-.+|+.+|..+...+....
T Consensus       274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            8431          1211111123344333321        1  122345889999999999999998887643

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=8.7e-07  Score=83.73  Aligned_cols=115  Identities=17%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCcccc---------cccc-------ceeeeeEE--EEE---ECCeEEEEEEEeC
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQER---------SLQM-------AGLNLINK--TLM---VQGARIAFSIWDV  154 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~---------~~~t-------~~~~~~~~--~~~---~~~~~~~l~i~Dt  154 (283)
                      .....+|.++|.-+.|||+|+ .++...-..         .|.+       .|..+...  ++-   ..++.+-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            344678999999999999999 876543221         1111       12232222  221   2567788999999


Q ss_pred             CCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       155 ~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      +|+-.|.+.....++-+|++++|+|+.+.-+++.-+-+.+.++   .+.++++|.||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhHH
Confidence            9999999988889999999999999988776654322222222   13455799999994

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.46  E-value=1.3e-06  Score=79.01  Aligned_cols=161  Identities=14%  Similarity=0.128  Sum_probs=76.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-ccccccee---eeeEEEEEECCeEEEEEEEeCCCCCCcccchhh-----hc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGL---NLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI-----AC  168 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~  168 (283)
                      ..++|+|+|++|+|||||| .+.+-.-. +....+|+   +.....+.... .-.+.+||.||...-.-....     -+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            4789999999999999999 88543222 11122222   11112222221 124788999995432222222     24


Q ss_pred             ccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCC--CCC---CC-CCcccchHHHHHHHHH----Hc
Q 023335          169 KDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDD--FVR---LP-PDLQWTIATQARAYAK----AM  237 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL--~~~---l~-~~~~~~~~~~~~~~~~----~~  237 (283)
                      ...|.+|++.+-    .|.... .+..++.+.  .++..+|-||+|.  .+.   .+ .-.+....+++++.+.    +.
T Consensus       113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            678988888752    243333 334445443  4456799999993  000   00 0111122334444433    23


Q ss_pred             CC---cEEEEcCCCC--cCHHHHHHHHHHHHhCC
Q 023335          238 KA---TLFFSSATHN--INVNKIFKFIMAKLFNL  266 (283)
Q Consensus       238 ~~---~~~e~Sa~~~--~~v~~lf~~l~~~i~~~  266 (283)
                      |+   ++|.+|+.+-  .++..+.+.|.+.+...
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence            43   5788998764  45788888888776544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=1.1e-06  Score=73.84  Aligned_cols=168  Identities=20%  Similarity=0.217  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHhHhhhcCccccccccceeeeeEEE--EEECCeEEEEEEEeCCCCCCcccc---hhhhcccCcEEE
Q 023335          101 LKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKT--LMVQGARIAFSIWDVGGDSRSFDH---VPIACKDAVAIL  175 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~ad~ii  175 (283)
                      .+|+++|...+||||+-+.+-.+.. +..|.-.+-..+.  -.+.+.-+.+++||.|||-.+-.-   ....++++-+.|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccC-CCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            4599999999999999843332222 1112211111111  112234578999999999775332   234578999999


Q ss_pred             EEEECCCh--hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch----HHHHHHHHHHc-----CCcEEEE
Q 023335          176 FMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKAM-----KATLFFS  244 (283)
Q Consensus       176 lv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~----~~~~~~~~~~~-----~~~~~e~  244 (283)
                      +|.|..+.  +.+..+.......-+.+++.-.=+...|.|-   ++++.+...    .+...+-....     .+.|+.+
T Consensus       107 fvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDG---Lsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  107 FVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG---LSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             EEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC---CchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            99998653  2222222222222222443333388899995   554433222    22222222222     3456777


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCCccccccc
Q 023335          245 SATHNINVNKIFKFIMAKLFNLPWTVKRN  273 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~  273 (283)
                      |-. ...|-|.|..+++.+..+-...|+-
T Consensus       184 SIy-DHSIfEAFSkvVQkLipqLptLEnl  211 (347)
T KOG3887|consen  184 SIY-DHSIFEAFSKVVQKLIPQLPTLENL  211 (347)
T ss_pred             eec-chHHHHHHHHHHHHHhhhchhHHHH
Confidence            776 4569999999999888777666554

>cd01858 NGP_1 NGP-1

Probab=98.42  E-value=1.2e-06  Score=70.37  Aligned_cols=88  Identities=13%  Similarity=0.211  Sum_probs=56.8

Q ss_pred             hcccCcEEEEEEECCChhh--HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335          167 ACKDAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  244 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  244 (283)
                      .++++|++++|.|++++..  ...+.+++   .....+.|+|+|.||+||   ++.   ....+....+.+.+....+.+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~~~~~p~ilVlNKiDl---~~~---~~~~~~~~~~~~~~~~~~~~i   75 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKEKPHKHLIFVLNKCDL---VPT---WVTARWVKILSKEYPTIAFHA   75 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHH---HhccCCCCEEEEEEchhc---CCH---HHHHHHHHHHhcCCcEEEEEe
Confidence            4679999999999988632  22333333   323334677999999997   221   112223333333333334679


Q ss_pred             cCCCCcCHHHHHHHHHHHH
Q 023335          245 SATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ||+.+.|++++++.+.+.+
T Consensus        76 Sa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          76 SINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eccccccHHHHHHHHHHHH
Confidence            9999999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.41  E-value=5.1e-07  Score=71.17  Aligned_cols=53  Identities=23%  Similarity=0.364  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  157 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~  157 (283)
                      +++++|.+|||||||+ ++.+..........|.+.....+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999 998887653222333333444555554   4689999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.41  E-value=5e-07  Score=78.95  Aligned_cols=149  Identities=13%  Similarity=0.034  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc--cchh------hhccc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--DHVP------IACKD  170 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~~~~------~~~~~  170 (283)
                      --|.++|-.|+|||||+ ++.+.... ...-.-..|...+....+... .+-+-||-|--.--  .+..      .-...
T Consensus       179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeVae  257 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEVAE  257 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence            35889999999999999 98854433 222233334434444444333 24567998832111  1111      12468


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHCCC-Cce----EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIP----ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~----ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                      +|.++.|.|++.++.-+.....+.-++...-. .|.    |=|-||.|......+             .+.++  .+.+|
T Consensus       258 adlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~E~n~--~v~is  322 (410)
T KOG0410|consen  258 ADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------EEKNL--DVGIS  322 (410)
T ss_pred             cceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------------cccCC--ccccc
Confidence            99999999999987655555555555544321 221    346799995221111             12223  57799


Q ss_pred             CCCCcCHHHHHHHHHHHHhC
Q 023335          246 ATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~  265 (283)
                      |++|+|.+++.+.+-..+..
T Consensus       323 altgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccCccHHHHHHHHHHHhhh
Confidence            99999999999887766543

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=1.7e-06  Score=84.36  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=80.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCc--ccc--ccc-------------cceeeeeEEEEEECCe-EEEEEEEeCCCCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNE--QER--SLQ-------------MAGLNLINKTLMVQGA-RIAFSIWDVGGDSR  159 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~~--~~~-------------t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~  159 (283)
                      ...+|.|+|.-.+|||||. +++...  ...  ...             ..|++.....+...-. .+.++++||||+-.
T Consensus         9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD   88 (697)
T COG0480           9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD   88 (697)
T ss_pred             cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence            3568999999999999999 875321  110  000             1244444443333223 57899999999999


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      |.......++-+|++++|+|+...-..+.-.-|.+..+.   +.|+|++.||+|.
T Consensus        89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR  140 (697)
T COG0480          89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDR  140 (697)
T ss_pred             cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccc
Confidence            999999999999999999999876555554556555433   5577999999995

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.35  E-value=1e-05  Score=72.41  Aligned_cols=161  Identities=15%  Similarity=0.108  Sum_probs=98.1

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccc------------e--eeeeEEEEEECC----------------
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMA------------G--LNLINKTLMVQG----------------  144 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~------------~--~~~~~~~~~~~~----------------  144 (283)
                      ....+.|.+.|.-+.|||||+ .++.+...+ .-.|.            |  .+..-..+-+++                
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            445788999999999999999 998776651 11110            1  111112222221                


Q ss_pred             -----eEEEEEEEeCCCCCCccc--chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335          145 -----ARIAFSIWDVGGDSRSFD--HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       145 -----~~~~l~i~Dt~G~~~~~~--~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~  217 (283)
                           .+--+.+.||.|+|.|..  +.-.+=.+.|-.+|++-+++.-+--. ++.+--+.  .-+-|.|++.||+|+   
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--a~~lPviVvvTK~D~---  267 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--AMELPVIVVVTKIDM---  267 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--hhcCCEEEEEEeccc---
Confidence                 123467899999998743  33334468899999998887643211 11111111  124567899999997   


Q ss_pred             CCCCcccchHHHHHHHHHHcC-------------------------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          218 LPPDLQWTIATQARAYAKAMK-------------------------ATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      .+++....+.+++..+.+..+                         +|+|++|+.+|+|++-+. .+...+.
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~-e~f~~Lp  338 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD-EFFLLLP  338 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH-HHHHhCC
Confidence            555554545566655554321                         478999999999976543 3444443

>PRK13796 GTPase YqeH; Provisional

Probab=98.34  E-value=3e-06  Score=77.45  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             ccCc-EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcCC---cEEE
Q 023335          169 KDAV-AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMKA---TLFF  243 (283)
Q Consensus       169 ~~ad-~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~~---~~~e  243 (283)
                      ..++ .+++|+|+.|..     ..|...+.++..+.++++|+||+||   ++... .....+....+++.+++   .++.
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DL---l~~~~~~~~i~~~l~~~~k~~g~~~~~v~~  138 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADL---LPKSVKKNKVKNWLRQEAKELGLRPVDVVL  138 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhh---CCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence            4445 999999998743     3466667666556777899999998   33221 11123334455666676   5789


Q ss_pred             EcCCCCcCHHHHHHHHHHHH
Q 023335          244 SSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +||+++.|++++++.+.+..
T Consensus       139 vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             EECCCCCCHHHHHHHHHHhc
Confidence            99999999999999997653

>smart00053 DYNc Dynamin, GTPase

Probab=98.33  E-value=6.5e-06  Score=70.62  Aligned_cols=66  Identities=17%  Similarity=0.116  Sum_probs=39.4

Q ss_pred             EEEEEEeCCCCCCc-------------ccchhhhcc-cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecC
Q 023335          147 IAFSIWDVGGDSRS-------------FDHVPIACK-DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF  212 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~-------------~~~~~~~~~-~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~  212 (283)
                      ..+.+.|+||-...             ..+...|++ ..+++++|+|++..-+-.+.....+.+..  ...+.|+|.||.
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence            45788999997421             124556777 45589999987643221122222222222  244668999999


Q ss_pred             CC
Q 023335          213 DD  214 (283)
Q Consensus       213 DL  214 (283)
                      |+
T Consensus       203 D~  204 (240)
T smart00053      203 DL  204 (240)
T ss_pred             CC
Confidence            96

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=6.9e-06  Score=69.42  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=98.6

Q ss_pred             EEEEEcCCCC--cHHHhH-hhhcCccc-cccccceeeeeEEEEEEC--CeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335          102 KISLLGDCQI--GKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus       102 KI~vlG~~~v--GKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      -++|+|..||  ||-+|+ ++....|. +........+..+++.-.  ...+.+.|--.. .+.+.... .......+++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lpn~-~~a~pl~a~v   83 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLPNA-EIAEPLQAFV   83 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccCCc-ccccceeeEE
Confidence            4688999999  999999 99988887 333333344444443211  112333332221 12221111 1123456899


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC---------------C----------------------
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR---------------L----------------------  218 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~---------------l----------------------  218 (283)
                      +|||++....+..++.|+....-.. -.+.+.+|||.|....               .                      
T Consensus        84 mvfdlse~s~l~alqdwl~htdins-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl  162 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDINS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL  162 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccccc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence            9999999999999999987532211 1234578999994210               0                      


Q ss_pred             --CCCcccchHHHHHHHHHHcCCcEEEEcCC------------CCcCHHHHHHHHHHHHhC
Q 023335          219 --PPDLQWTIATQARAYAKAMKATLFFSSAT------------HNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       219 --~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~------------~~~~v~~lf~~l~~~i~~  265 (283)
                        +++..-.+...+.+|+.++|+.++|.+|.            +..||+.+|..+...+..
T Consensus       163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp  223 (418)
T KOG4273|consen  163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP  223 (418)
T ss_pred             cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence              00111123566788999999999998884            235788898888776544

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.30  E-value=3.9e-06  Score=73.59  Aligned_cols=54  Identities=17%  Similarity=0.293  Sum_probs=36.6

Q ss_pred             ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          204 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       204 ~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      .-++|.||+||   ++.. ... .+...+..+..  ..+++.+||++|+|+++++++|.+.
T Consensus       232 ADIVVLNKiDL---l~~~-~~d-le~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        232 ASLMLLNKVDL---LPYL-NFD-VEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             CcEEEEEhHHc---Cccc-HHH-HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            44899999997   3211 111 22233333332  5789999999999999999999774

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.29  E-value=4.5e-06  Score=66.84  Aligned_cols=84  Identities=17%  Similarity=0.016  Sum_probs=54.0

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335          172 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  251 (283)
Q Consensus       172 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  251 (283)
                      |++++|+|+.++.+...  .|+........+.|+|+|.||+||   .+.   ....+....+.+..+..++.+||+++.|
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl---~~~---~~~~~~~~~~~~~~~~~ii~vSa~~~~g   72 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADL---VPK---EVLRKWLAYLRHSYPTIPFKISATNGQG   72 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhc---CCH---HHHHHHHHHHHhhCCceEEEEeccCCcC
Confidence            68999999988765442  233311112335677999999997   221   1111212233333455678899999999


Q ss_pred             HHHHHHHHHHHH
Q 023335          252 VNKIFKFIMAKL  263 (283)
Q Consensus       252 v~~lf~~l~~~i  263 (283)
                      ++++++.+.+..
T Consensus        73 i~~L~~~i~~~~   84 (155)
T cd01849          73 IEKKESAFTKQT   84 (155)
T ss_pred             hhhHHHHHHHHh
Confidence            999999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.22  E-value=2.9e-06  Score=67.89  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=37.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      ..+++++|.+|+|||||+ ++.+.......++.|.+.....+..++   .+.+|||||
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            578999999999999999 998765444444555443323333332   588999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.20  E-value=3.2e-06  Score=68.86  Aligned_cols=56  Identities=13%  Similarity=0.232  Sum_probs=38.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  157 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~  157 (283)
                      ..++++++|.+|||||||+ ++.+..+....+..+.+.....+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4579999999999999999 99987765222222333333334443   34789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.18  E-value=6.4e-06  Score=64.89  Aligned_cols=77  Identities=16%  Similarity=0.078  Sum_probs=52.3

Q ss_pred             hhhcccCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335          165 PIACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF  242 (283)
Q Consensus       165 ~~~~~~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
                      ...+.++|++++|+|+.++.+..  .+..|+...   ..+.|+++|.||+||   .++   . ...+..++.+..+..++
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL---~~~---~-~~~~~~~~~~~~~~~ii   75 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADL---LTE---E-QRKAWAEYFKKEGIVVV   75 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhc---CCH---H-HHHHHHHHHHhcCCeEE
Confidence            34578999999999998876544  444555433   245677999999997   221   1 12334455556677899


Q ss_pred             EEcCCCCcC
Q 023335          243 FSSATHNIN  251 (283)
Q Consensus       243 e~Sa~~~~~  251 (283)
                      ++||+++.+
T Consensus        76 ~iSa~~~~~   84 (141)
T cd01857          76 FFSALKENA   84 (141)
T ss_pred             EEEecCCCc
Confidence            999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.14  E-value=4.7e-06  Score=67.99  Aligned_cols=53  Identities=15%  Similarity=0.282  Sum_probs=37.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      ..++++++|.+|||||||+ ++.+....  ...|  |.+.....+.++.   .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~p--g~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATP--GVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCC--CeEcceEEEEeCC---CEEEEECcC
Confidence            3589999999999999999 99887654  4444  3332223333432   477899998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=3.1e-05  Score=70.45  Aligned_cols=132  Identities=9%  Similarity=0.087  Sum_probs=86.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc-Cc-c------c----ccc---------ccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG-NE-Q------E----RSL---------QMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~-~~-~------~----~~~---------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      ++-..+||-.|-+|||||. +++- +. .      .    ...         ...|++..+..+.++.....+++.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            3456889999999999999 7642 11 0      0    000         1236677666777777778899999999


Q ss_pred             CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH
Q 023335          157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA  236 (283)
Q Consensus       157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~  236 (283)
                      ++.|..-...-+.-+|..+.|.|+...---+. .++++-.+.  .+.|++-..||.|-    +   -+...+.+.++-+.
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl--R~iPI~TFiNKlDR----~---~rdP~ELLdEiE~~  160 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL--RDIPIFTFINKLDR----E---GRDPLELLDEIEEE  160 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh--cCCceEEEeecccc----c---cCChHHHHHHHHHH
Confidence            99998888888899999999999876421111 233332222  25566788999994    1   12234444445555


Q ss_pred             cCCc
Q 023335          237 MKAT  240 (283)
Q Consensus       237 ~~~~  240 (283)
                      +++.
T Consensus       161 L~i~  164 (528)
T COG4108         161 LGIQ  164 (528)
T ss_pred             hCcc
Confidence            5543

>cd01858 NGP_1 NGP-1

Probab=98.14  E-value=5.8e-06  Score=66.32  Aligned_cols=52  Identities=13%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      .++|+++|.+|||||||+ ++.+....  ...+  |.......+..+.   .+.+.||||
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP--GETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC--CeeEeEEEEEcCC---CEEEEECcC
Confidence            578999999999999999 99887654  3333  2222222333322   256899998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=1.9e-05  Score=68.34  Aligned_cols=142  Identities=14%  Similarity=0.153  Sum_probs=91.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcC-------c---cc--cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGN-------E---QE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~-------~---~~--~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      .....+|..+|.-.-|||||. .+..-       .   |.  ..-|   ..|+.+....+.++..+-.+...|+||+..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            345789999999999999998 66321       1   11  1111   2366666666777666667778999999887


Q ss_pred             ccchhhhcccCcEEEEEEECCCh---hhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCC-CcccchHHHHHHHHH
Q 023335          161 FDHVPIACKDAVAILFMFDLTSR---CTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPP-DLQWTIATQARAYAK  235 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~-~~~~~~~~~~~~~~~  235 (283)
                      -...-.-..+.|+.|||++.+|.   ++-+.+.    ..++  -..|- +++.||+|+   .++ +....+..+.+++..
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL----larq--vGvp~ivvflnK~Dm---vdd~ellelVemEvreLLs  159 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL----LARQ--VGVPYIVVFLNKVDM---VDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh----hhhh--cCCcEEEEEEecccc---cCcHHHHHHHHHHHHHHHH
Confidence            54333334578999999999874   3333321    1111  13334 577999998   332 223344788899999


Q ss_pred             HcCC-----cEEEEcCC
Q 023335          236 AMKA-----TLFFSSAT  247 (283)
Q Consensus       236 ~~~~-----~~~e~Sa~  247 (283)
                      .+++     +++.-||.
T Consensus       160 ~y~f~gd~~Pii~gSal  176 (394)
T COG0050         160 EYGFPGDDTPIIRGSAL  176 (394)
T ss_pred             HcCCCCCCcceeechhh
Confidence            9976     45666654

>cd01856 YlqF YlqF

Probab=98.11  E-value=5.9e-06  Score=67.30  Aligned_cols=90  Identities=14%  Similarity=0.028  Sum_probs=58.8

Q ss_pred             chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335          163 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF  242 (283)
Q Consensus       163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
                      .....+.+||++++|+|++++....+ ..+...    ..+.++++|.||+||   .++   .. .....++.+..+..++
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~----~~~k~~ilVlNK~Dl---~~~---~~-~~~~~~~~~~~~~~vi   79 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKI----LGNKPRIIVLNKADL---ADP---KK-TKKWLKYFESKGEKVL   79 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCC-hhhHhH----hcCCCEEEEEehhhc---CCh---HH-HHHHHHHHHhcCCeEE
Confidence            34556789999999999987643221 112222    234677999999997   221   11 1112223333345678


Q ss_pred             EEcCCCCcCHHHHHHHHHHHHh
Q 023335          243 FSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       243 e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      .+||+++.|++++.+.+...+.
T Consensus        80 ~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          80 FVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEECCCcccHHHHHHHHHHHHH
Confidence            9999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.10  E-value=3.8e-05  Score=64.67  Aligned_cols=156  Identities=10%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc---------cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCc-------
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE---------RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------  160 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~---------~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------  160 (283)
                      ..++|+|+|.+|.|||||+ .+......         ..++ |+.+......+.-++.+.++.+.||+|--..       
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            3689999999999999999 76543322         1233 5555555566666788899999999983211       


Q ss_pred             -------ccchhhhc--------------ccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335          161 -------FDHVPIAC--------------KDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRL  218 (283)
Q Consensus       161 -------~~~~~~~~--------------~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l  218 (283)
                             +.....|+              ...+++++....+. .++.-+. .+++.+.+   -.-+|-|.-|+|-   +
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~---vvNvvPVIakaDt---l  197 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE---VVNVVPVIAKADT---L  197 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh---hheeeeeEeeccc---c
Confidence                   01111222              24466666665553 2333332 33444332   2234567789994   4


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023335          219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      .-+++..-.+.+++-...+++.+|.--+.+.+.=+..++.-++
T Consensus       198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR  240 (336)
T KOG1547|consen  198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR  240 (336)
T ss_pred             cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence            4344444466677777788888776444443333344444444

>TIGR00092 GTP-binding protein YchF

Probab=98.10  E-value=2.2e-05  Score=71.15  Aligned_cols=81  Identities=10%  Similarity=0.026  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcc-c-cccccceeeeeEEEEEECCe---------------EEEEEEEeCCCCCC---
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR---  159 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~---  159 (283)
                      +|+-|+|.||||||||. .+.+... . .+||.+..+.....+.+.+.               ...+.+.|+||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            79999999999999999 8888877 5 66775544555556666542               23578899998544   


Q ss_pred             -cccchhh---hcccCcEEEEEEECC
Q 023335          160 -SFDHVPI---ACKDAVAILFMFDLT  181 (283)
Q Consensus       160 -~~~~~~~---~~~~ad~iilv~D~~  181 (283)
                       ...+...   .++++|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence             2233333   458999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.08  E-value=4.9e-05  Score=67.86  Aligned_cols=138  Identities=17%  Similarity=0.219  Sum_probs=86.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccc-----------cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-----
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERS-----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-----  161 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----  161 (283)
                      ..+.|+++|..|.|||||+ .+++......           .+++.+......+.-++..+.+.+.||+|--.+-     
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            4689999999999999999 9987643311           1233344444444457888999999999832210     


Q ss_pred             ---------cchhhhc--------------ccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335          162 ---------DHVPIAC--------------KDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       162 ---------~~~~~~~--------------~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~  217 (283)
                               .....|+              .+.+++++..-.+.. .+..+. ..+.++   ....-.|-|..|+|.   
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~l---s~~vNlIPVI~KaD~---  174 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRL---SKRVNLIPVIAKADT---  174 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHH---hcccCeeeeeecccc---
Confidence                     1111121              245677777665432 222222 233333   333445678889997   


Q ss_pred             CCCCcccchHHHHHHHHHHcCCcEEE
Q 023335          218 LPPDLQWTIATQARAYAKAMKATLFF  243 (283)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~~~~~~~e  243 (283)
                      +..++.....+.+.+....+++++|.
T Consensus       175 lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         175 LTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            66655555677788888888998885

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.07  E-value=1.6e-05  Score=68.40  Aligned_cols=157  Identities=13%  Similarity=0.133  Sum_probs=88.2

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCC----------CCcccc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDH  163 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~  163 (283)
                      ......++++|..|||||||+ .++..+..  ...++.|.......+.++   -.+.+.|.+|-          +.+..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence            455789999999999999999 88876655  222244433322233333   23556798981          223445


Q ss_pred             hhhhcccCc---EEEEEEECCCh--hhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccch---HHHHHHHH
Q 023335          164 VPIACKDAV---AILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTI---ATQARAYA  234 (283)
Q Consensus       164 ~~~~~~~ad---~iilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~---~~~~~~~~  234 (283)
                      ...|+.+-+   -+++..|++.+  .+-.....|+.+      +..| .+|.||||.......-.....   ......+.
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            555554332   45555666543  111223466655      4455 699999995322110000110   11111111


Q ss_pred             ---HHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          235 ---KAMKATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       235 ---~~~~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                         .....+++.+|+.++.|+++++-.+.+.
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehhhh
Confidence               1223567789999999999988776553

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=5.6e-05  Score=67.49  Aligned_cols=115  Identities=12%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccc------------------------cccceeeeeEEEEEECC-------
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERS------------------------LQMAGLNLINKTLMVQG-------  144 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~------------------------~~t~~~~~~~~~~~~~~-------  144 (283)
                      ...+++++++|...+|||||+ -+..++..+.                        ..+.|++-..+.+++..       
T Consensus       164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi  243 (591)
T KOG1143|consen  164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI  243 (591)
T ss_pred             cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence            446899999999999999999 8876654411                        11234444444444421       


Q ss_pred             ---eEEEEEEEeCCCCCCcccchhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          145 ---ARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       145 ---~~~~l~i~Dt~G~~~~~~~~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                         ...-+.++|.+|+.+|....-.-+.  ..|..++|++++....... ++.+-.+...  +.|.+++.+|+||
T Consensus       244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~Dl  315 (591)
T KOG1143|consen  244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKMDL  315 (591)
T ss_pred             HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEeecc
Confidence               1234788999999998654433332  3467788888766543221 2223333222  4456799999997

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=8.4e-05  Score=66.74  Aligned_cols=142  Identities=13%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccc--------cc--cceeeeeEEEEEECCeEEEEEEEeCCCCCCc-------c
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERS--------LQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------F  161 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~--------~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~  161 (283)
                      .+.++++|+.|.|||||+ .++...+...        .+  |..+......+.-+|..+.+.+.||||--..       .
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            589999999999999999 8776644421        11  3333333334444678899999999983211       1


Q ss_pred             ------------------cchhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335          162 ------------------DHVPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  221 (283)
Q Consensus       162 ------------------~~~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~  221 (283)
                                        .+.+.-+.  +.++.++....+.. .+..+.  +..+++......+|-|..|+|.   +..+
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~---lT~~  174 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADT---LTKD  174 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeecccc---CCHH
Confidence                              11111222  56777777775532 122221  1223333334445678889997   5555


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          222 LQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      ........+.+-...+++.+|.-..-
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCC
Confidence            55555777777788888887764433

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.03  E-value=1e-05  Score=71.16  Aligned_cols=149  Identities=11%  Similarity=0.180  Sum_probs=77.4

Q ss_pred             ChhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhc-cc-CCCCcc---cc-cccccCCCCCCCCCC
Q 023335            1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVC-SI-GKQPAV---RY-QKLTRRSSSESSPAP   74 (283)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~-g~~~~~---~~-~~~~~~~~~~~~p~p   74 (283)
                      |+|+++|+.+++.+++..+..+|.|..+..+...+.+.+..  .+.+++ +- .-....   .+ ........+   .-+
T Consensus         8 m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~--kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~---vi~   82 (276)
T TIGR03596         8 MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGN--KPRLIVLNKADLADPAVTKQWLKYFEEKGIK---ALA   82 (276)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCC--CCEEEEEEccccCCHHHHHHHHHHHHHcCCe---EEE
Confidence            89999999999999999999999998877777655444421  122222 11 111000   00 000000000   000


Q ss_pred             ccccc--ccccc----ccccCCC----CCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEEC
Q 023335           75 DTMEA--GLVEL----SRTFSSG----YDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQ  143 (283)
Q Consensus        75 ~~~~~--g~~~~----~~~~~~~----~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~  143 (283)
                      ..+..  |....    .......    .........++++++|.+|||||||+ ++.+.......+..|.+.....+.++
T Consensus        83 iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~  162 (276)
T TIGR03596        83 INAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS  162 (276)
T ss_pred             EECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC
Confidence            00000  10000    0000000    00011234689999999999999999 99887654222222333333344443


Q ss_pred             CeEEEEEEEeCCCC
Q 023335          144 GARIAFSIWDVGGD  157 (283)
Q Consensus       144 ~~~~~l~i~Dt~G~  157 (283)
                      .   .+.++||||.
T Consensus       163 ~---~~~l~DtPG~  173 (276)
T TIGR03596       163 D---GLELLDTPGI  173 (276)
T ss_pred             C---CEEEEECCCc
Confidence            3   3689999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.01  E-value=1.4e-05  Score=68.42  Aligned_cols=100  Identities=14%  Similarity=0.105  Sum_probs=55.8

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      +.+.|.+|.|--...   -....-+|.+++|.-..-.+..+-++.=+-++       .-|+|.||+|+    +.  ....
T Consensus       122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-------aDi~vVNKaD~----~g--A~~~  185 (266)
T PF03308_consen  122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI-------ADIFVVNKADR----PG--ADRT  185 (266)
T ss_dssp             -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--------SEEEEE--SH----HH--HHHH
T ss_pred             CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-------ccEEEEeCCCh----HH--HHHH
Confidence            446677777632211   11235689999998776655554443222222       23899999994    11  1112


Q ss_pred             HHHHHHHHHH-------cCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          227 ATQARAYAKA-------MKATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       227 ~~~~~~~~~~-------~~~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      ..+.+....-       +..+.+.+||.++.||+++++.|.+.
T Consensus       186 ~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  186 VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            2222222221       12478899999999999999998864

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.00  E-value=1.6e-05  Score=70.31  Aligned_cols=151  Identities=13%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             ChhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCC-CCcccccc----cccCCCCCCCCCCc
Q 023335            1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGK-QPAVRYQK----LTRRSSSESSPAPD   75 (283)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~-~~~~~~~~----~~~~~~~~~~p~p~   75 (283)
                      |+|+++|+.+++.+++..+..+|.|..+..+...+.+.+.... .+++.+-.. ........    ......+   .-+.
T Consensus        11 m~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp-~iiVlNK~DL~~~~~~~~~~~~~~~~~~~---vi~v   86 (287)
T PRK09563         11 MAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKP-RLLILNKSDLADPEVTKKWIEYFEEQGIK---ALAI   86 (287)
T ss_pred             HHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCC-EEEEEEchhcCCHHHHHHHHHHHHHcCCe---EEEE
Confidence            8999999999999999999999999888877765544443111 122211111 10000000    0000000   0000


Q ss_pred             cccc--ccccccc----ccCC----CCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECC
Q 023335           76 TMEA--GLVELSR----TFSS----GYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQG  144 (283)
Q Consensus        76 ~~~~--g~~~~~~----~~~~----~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~  144 (283)
                      .+..  |......    ....    ..........++++++|.+|||||||+ ++.+.......+..|.+.....+.+++
T Consensus        87 Sa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~  166 (287)
T PRK09563         87 NAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK  166 (287)
T ss_pred             ECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC
Confidence            0000  0000000    0000    000111234689999999999999999 998877542222233333333444443


Q ss_pred             eEEEEEEEeCCCCC
Q 023335          145 ARIAFSIWDVGGDS  158 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~  158 (283)
                         .+.++||||--
T Consensus       167 ---~~~l~DtPGi~  177 (287)
T PRK09563        167 ---GLELLDTPGIL  177 (287)
T ss_pred             ---cEEEEECCCcC
Confidence               36789999964

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.98  E-value=6.9e-05  Score=65.29  Aligned_cols=104  Identities=14%  Similarity=0.031  Sum_probs=58.3

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc-
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT-  225 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~-  225 (283)
                      +.+.|.+|.|--+...   ....-+|.+++|.=..-.+..+-++.=+-++       --|+|.||.|.    ....... 
T Consensus       144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi-------aDi~vINKaD~----~~A~~a~r  209 (323)
T COG1703         144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI-------ADIIVINKADR----KGAEKAAR  209 (323)
T ss_pred             CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh-------hheeeEeccCh----hhHHHHHH
Confidence            4567778876433211   1224678888887554444444443222121       23899999994    2111100 


Q ss_pred             hHHHHHHHHH----H--cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          226 IATQARAYAK----A--MKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       226 ~~~~~~~~~~----~--~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ....+..+..    .  +..+.+.+||.+|+|++++++.+.+..-
T Consensus       210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            0111111111    1  2346899999999999999999987653

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.93  E-value=3.3e-05  Score=68.14  Aligned_cols=83  Identities=14%  Similarity=0.205  Sum_probs=61.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC---------------CeEEEEEEEeCCCCC---
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ---------------GARIAFSIWDVGGDS---  158 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~---------------~~~~~l~i~Dt~G~~---  158 (283)
                      ..+|+-|+|.||||||||. .+.+.... ..+|...++.....+.+.               .....++++|++|.-   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            4789999999999999999 88888776 888865555554455443               224678999999754   


Q ss_pred             -Ccccchhhh---cccCcEEEEEEECC
Q 023335          159 -RSFDHVPIA---CKDAVAILFMFDLT  181 (283)
Q Consensus       159 -~~~~~~~~~---~~~ad~iilv~D~~  181 (283)
                       ....+...|   ++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence             345555555   47899999998764

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.92  E-value=4.7e-05  Score=66.93  Aligned_cols=90  Identities=17%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  243 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e  243 (283)
                      ....+..+|++++|+|+.++.+..+  .++.++.   .+.|.|+|.||+||   .+.   ... +...++.+..+..++.
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL---~~~---~~~-~~~~~~~~~~~~~vi~   82 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADL---ADP---AVT-KQWLKYFEEKGIKALA   82 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEcccc---CCH---HHH-HHHHHHHHHcCCeEEE
Confidence            4456789999999999977644322  1122221   25677899999996   221   111 1112222334667899


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhC
Q 023335          244 SSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      +||+++.|++++.+.+.+.+.+
T Consensus        83 iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        83 INAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             EECCCcccHHHHHHHHHHHHHH
Confidence            9999999999999988877644

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.89  E-value=2.2e-05  Score=70.51  Aligned_cols=58  Identities=12%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  158 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  158 (283)
                      ...+++.|+|-||||||||| ++++.......+..|.+.....+.++..   +.++||||--
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            44688999999999999999 9998887633333355544455555543   7789999953

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=5.2e-05  Score=67.62  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc----cccccceeeeeEEEEE------ECCe------------------------
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE----RSLQMAGLNLINKTLM------VQGA------------------------  145 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~----~~~~t~~~~~~~~~~~------~~~~------------------------  145 (283)
                      .-|+++|.-..|||||| -++...|.    ...||+  ++....+.      ++|.                        
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            35899999999999999 88888776    233333  11111110      1110                        


Q ss_pred             ---------EEEEEEEeCCCCCC-----------cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce
Q 023335          146 ---------RIAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP  205 (283)
Q Consensus       146 ---------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~  205 (283)
                               --.+.|.||+|.-.           |.....-|..++|.||++||....+--.+....+..++.+.  ..+
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E--dki  214 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE--DKI  214 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc--cee
Confidence                     02378899998422           33444557789999999999876654444455555555432  233


Q ss_pred             EEEeecCCC
Q 023335          206 ILIGTKFDD  214 (283)
Q Consensus       206 ilvgnK~DL  214 (283)
                      =||.||.|.
T Consensus       215 RVVLNKADq  223 (532)
T KOG1954|consen  215 RVVLNKADQ  223 (532)
T ss_pred             EEEeccccc
Confidence            489999994

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.83  E-value=6e-05  Score=66.05  Aligned_cols=96  Identities=15%  Similarity=0.123  Sum_probs=56.4

Q ss_pred             EEEEEEEeCCCCCCcccchh----h---h-----cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVP----I---A-----CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~----~---~-----~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      .+.+.+.||+|........-    .   .     -...|.+++|.|.+..  .+.+. +.....+..  .+--+|.||.|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~--~~~g~IlTKlD  228 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV--GLTGIILTKLD  228 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC--CCCEEEEEccC
Confidence            36788999999765322111    1   1     1238899999999743  22222 222222211  23359999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      .      ..+   .-.+..++...+.|+.+++  +|++++++-.
T Consensus       229 e------~~~---~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       229 G------TAK---GGIILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             C------CCC---ccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            4      111   3345555666789988887  7888877643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.82  E-value=0.0001  Score=76.92  Aligned_cols=108  Identities=17%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccc-cc----cccceee-eeEEEEEECCeEEEEEEEeCCCCC--------Ccccchhhh
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQE-RS----LQMAGLN-LINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIA  167 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~-~~----~~t~~~~-~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~  167 (283)
                      .+|||++|+||||+| +. +-.|. ..    ..+.+.. ......-+.+.   -.++||+|.-        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence            679999999999999 55 44454 21    1111110 00111112222   3478999832        122334444


Q ss_pred             c---------ccCcEEEEEEECCChh-----hH----HHHHHHHHHHHhHCCCCce-EEEeecCCC
Q 023335          168 C---------KDAVAILFMFDLTSRC-----TL----NSIVGWYSEARKWNQTAIP-ILIGTKFDD  214 (283)
Q Consensus       168 ~---------~~ad~iilv~D~~~~~-----s~----~~~~~~~~~i~~~~~~~~~-ilvgnK~DL  214 (283)
                      +         +..+++|+++|+.+--     ..    ..++..++++.....-..| .||.||+|+
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl  255 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL  255 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence            3         3579999999986532     11    2345667777766554455 599999998

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.78  E-value=0.00011  Score=64.86  Aligned_cols=90  Identities=16%  Similarity=0.045  Sum_probs=59.4

Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  243 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e  243 (283)
                      ....+..+|++|+|+|+.++.+.++  .++.++.   .+.+.++|.||+||   .+.   .. .+...++.+..+..++.
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL---~~~---~~-~~~~~~~~~~~~~~vi~   85 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDL---ADP---EV-TKKWIEYFEEQGIKALA   85 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhc---CCH---HH-HHHHHHHHHHcCCeEEE
Confidence            4456789999999999977644322  1222222   25677999999996   221   11 11222223344667889


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhC
Q 023335          244 SSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      +||+++.|++++.+.+.+.+.+
T Consensus        86 vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         86 INAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             EECCCcccHHHHHHHHHHHHHH
Confidence            9999999999999988777643

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.77  E-value=0.00014  Score=61.98  Aligned_cols=84  Identities=17%  Similarity=0.320  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----cc---chhhhcccC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FD---HVPIACKDA  171 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~---~~~~~~~~a  171 (283)
                      -||-++|.|.+|||||+ .+.+.... ..+..+........+.+++.+  +++.|.||.-+.    +.   ..-...+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence            47889999999999999 88876655 555544444444555566654  677999985331    11   122245789


Q ss_pred             cEEEEEEECCChhhH
Q 023335          172 VAILFMFDLTSRCTL  186 (283)
Q Consensus       172 d~iilv~D~~~~~s~  186 (283)
                      +.+++|.|+..+-+-
T Consensus       138 nli~~vld~~kp~~h  152 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSH  152 (358)
T ss_pred             cEEEEEeeccCcccH
Confidence            999999998765443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.77  E-value=0.00019  Score=64.27  Aligned_cols=94  Identities=17%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCCCCCcccc----hhhh--------cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecC
Q 023335          146 RIAFSIWDVGGDSRSFDH----VPIA--------CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKF  212 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~----~~~~--------~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~  212 (283)
                      .+.+.+.||+|.......    ...+        -...+..++|.|++...  +.+..    +..+... .+--+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~----a~~f~~~~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ----AKAFHEAVGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH----HHHHHhhCCCCEEEEECC
Confidence            457889999997543221    1111        12467789999998532  22221    2222212 2336999999


Q ss_pred             CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       213 DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |.      ...   .-.+...+...++|+.+++  +|++++++-
T Consensus       270 D~------t~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DG------TAK---GGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CC------CCC---ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            93      111   2345555677799999988  788887763

>cd01855 YqeH YqeH

Probab=97.77  E-value=3.7e-05  Score=63.63  Aligned_cols=52  Identities=13%  Similarity=0.338  Sum_probs=34.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcc---------c-cccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQ---------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~---------~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      ...++++|.+|||||||+ .+.+...         . +..+  |.+.....+.++.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP--GTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC--CeeeeeEEEecCC---CCEEEeCcC
Confidence            357999999999999999 9887542         1 2333  3333333444433   468899998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00012  Score=70.65  Aligned_cols=107  Identities=21%  Similarity=0.275  Sum_probs=79.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCc------------cc---cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNE------------QE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  163 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~------------~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  163 (283)
                      --+++++-.-.-|||||. .++...            |.   ++..+.|++.....+..-.+.+.++++|+||+-.|.+.
T Consensus         9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se   88 (887)
T KOG0467|consen    9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE   88 (887)
T ss_pred             eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence            457889999999999999 886432            22   22235566666666666567788999999999999999


Q ss_pred             hhhhcccCcEEEEEEECCChh---hHHHHH-HHHHHHHhHCCCCceEEEeecCC
Q 023335          164 VPIACKDAVAILFMFDLTSRC---TLNSIV-GWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~---s~~~~~-~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      .....+-+|++++.+|+...-   +..-++ .|.+       ...+++|.||+|
T Consensus        89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinkid  135 (887)
T KOG0467|consen   89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKID  135 (887)
T ss_pred             hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehhh
Confidence            999999999999999987643   222222 2433       557899999999

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.71  E-value=0.00016  Score=61.64  Aligned_cols=84  Identities=15%  Similarity=0.157  Sum_probs=52.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC--ccc--ccc-c-cceeeeeEEEEEECCeEEEEEEEeCCCCCCccc------chhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN--EQE--RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPI  166 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~--~~~--~~~-~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~  166 (283)
                      -.-|.|+|.+++|||+|+ ++++.  .|.  ... + |.|+-.....+.. +....+.+.||+|......      ..-.
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence            345779999999999999 99988  776  222 2 4455443332221 3446788999999654321      1122


Q ss_pred             hccc--CcEEEEEEECCChh
Q 023335          167 ACKD--AVAILFMFDLTSRC  184 (283)
Q Consensus       167 ~~~~--ad~iilv~D~~~~~  184 (283)
                      .+..  ++++|+..+.+..+
T Consensus        86 ~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          86 ALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHhCEEEEeccCcccH
Confidence            2333  78888877765443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=4.1e-05  Score=66.61  Aligned_cols=116  Identities=14%  Similarity=0.127  Sum_probs=71.4

Q ss_pred             EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH
Q 023335          148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  227 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~  227 (283)
                      .+.|.|++|++-.....-.-..-.|+.++....+....-....+.+..+.-. .-+.++++-||+||   ..++......
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDl---i~e~~A~eq~  201 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL---IKESQALEQH  201 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhh---hhHHHHHHHH
Confidence            4678899998753222111112336777777665432221112222222211 12356789999998   4444334446


Q ss_pred             HHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          228 TQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       228 ~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +++++|.+.-   +++++.+||.-+.||+-+.++|++.+...+
T Consensus       202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv  244 (466)
T KOG0466|consen  202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV  244 (466)
T ss_pred             HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence            6777777654   578999999999999999999999885543

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00048  Score=65.95  Aligned_cols=113  Identities=12%  Similarity=0.197  Sum_probs=67.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeee---------------------------------------
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNL---------------------------------------  135 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~---------------------------------------  135 (283)
                      ....||++.|+.+.||||++ .++..+.-  ...+++..-.                                       
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            34689999999999999999 88765433  2222221100                                       


Q ss_pred             ---eEEEEEECCeEE-----EEEEEeCCCCCC---cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc
Q 023335          136 ---INKTLMVQGARI-----AFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI  204 (283)
Q Consensus       136 ---~~~~~~~~~~~~-----~l~i~Dt~G~~~---~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~  204 (283)
                         .--.+.++....     .+.+.|.||-+-   ...-...++.++|++|||...-+.-+..+ ..++....+   .+|
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCC
Confidence               000011111111     245677787543   34445667899999999998877655444 334444333   244


Q ss_pred             e-EEEeecCCC
Q 023335          205 P-ILIGTKFDD  214 (283)
Q Consensus       205 ~-ilvgnK~DL  214 (283)
                      - +|+-||+|.
T Consensus       263 niFIlnnkwDa  273 (749)
T KOG0448|consen  263 NIFILNNKWDA  273 (749)
T ss_pred             cEEEEechhhh
Confidence            4 588999995

>PRK01889 GTPase RsgA; Reviewed

Probab=97.70  E-value=0.00026  Score=64.49  Aligned_cols=84  Identities=15%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      ..++|.+++|+++...-....+..++..+...  +.+|+||.||+||   .++  .....+....+  ..+.+.+.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL---~~~--~~~~~~~~~~~--~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADL---CED--AEEKIAEVEAL--APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhc---CCC--HHHHHHHHHHh--CCCCcEEEEECC
Confidence            57899999999997544444556666655543  4577999999997   322  11112222322  347789999999


Q ss_pred             CCcCHHHHHHHHH
Q 023335          248 HNINVNKIFKFIM  260 (283)
Q Consensus       248 ~~~~v~~lf~~l~  260 (283)
                      ++.|++++..++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999888874

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.65  E-value=0.00011  Score=58.64  Aligned_cols=53  Identities=13%  Similarity=0.238  Sum_probs=35.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      ...+++++|.+|||||||+ .+.+....  +..+.+..+..  .+.++   ..+.+.||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence            3578999999999999999 88876532  33332222222  22332   2478899998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.64  E-value=0.0023  Score=51.01  Aligned_cols=55  Identities=31%  Similarity=0.534  Sum_probs=36.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG  155 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~  155 (283)
                      ..+||.|-|.|||||||++ ++...--...+.--|  +....+.-+|+.+-|.+.|+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEcc
Confidence            3689999999999999999 876432222222222  334455566777777777776

>PRK14974 cell division protein FtsY; Provisional

Probab=97.63  E-value=0.00023  Score=64.15  Aligned_cols=94  Identities=18%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             EEEEEEeCCCCCCccc-ch---hhh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFD-HV---PIA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~-~~---~~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~  219 (283)
                      +.+.+.||+|...... +.   ..+  ..+.|.++||.|.+....   .   +..++.+.. -.+--+|.||.|.     
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~---~~~a~~f~~~~~~~giIlTKlD~-----  291 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---A---VEQAREFNEAVGIDGVILTKVDA-----  291 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---H---HHHHHHHHhcCCCCEEEEeeecC-----
Confidence            4588999999764321 11   111  125788999999865421   1   112222221 1233699999994     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                       ...   .-.+..++...+.|+.+++  +|++++++..
T Consensus       292 -~~~---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        292 -DAK---GGAALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             -CCC---ccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence             111   2334455556788988887  7899988753

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=2.9e-05  Score=65.99  Aligned_cols=171  Identities=16%  Similarity=0.261  Sum_probs=102.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECC-eEEEEEEEeCCCCCCcccchhhhcc----c
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACK----D  170 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~----~  170 (283)
                      ...+..|++.|..+  ||++| ++....-....+|...+|....-.-.+ .+--.++|+.+|......+..--++    .
T Consensus        42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~  119 (363)
T KOG3929|consen   42 EKFEFFIGSKGNGG--KTTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR  119 (363)
T ss_pred             ccceeEEEEecCCc--eeEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence            34577888998875  48888 776554444444555444322111111 2333688999987654333222111    2


Q ss_pred             CcEEEEEEECCChhhH-HHHHHHHHHH----------------------HhH---------------CCCC-ceEEEeec
Q 023335          171 AVAILFMFDLTSRCTL-NSIVGWYSEA----------------------RKW---------------NQTA-IPILIGTK  211 (283)
Q Consensus       171 ad~iilv~D~~~~~s~-~~~~~~~~~i----------------------~~~---------------~~~~-~~ilvgnK  211 (283)
                      .-.+|++.|+++++.| ..+...++.+                      +..               ++-. |++|||.|
T Consensus       120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK  199 (363)
T KOG3929|consen  120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK  199 (363)
T ss_pred             hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence            2367899999987543 1112111111                      111               1112 33699999


Q ss_pred             CCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023335          212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       212 ~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~  269 (283)
                      .|.+..+.+..++..-.-++.+|..+|......|++...=.+.+-+.+.+..+..+..
T Consensus       200 YDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG~~~~  257 (363)
T KOG3929|consen  200 YDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGIDKS  257 (363)
T ss_pred             hhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcCCcCC
Confidence            9988777777777777888888999999888888886555555556666666666544

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.52  E-value=0.0012  Score=59.21  Aligned_cols=30  Identities=17%  Similarity=0.522  Sum_probs=25.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCcc
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQ  124 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~  124 (283)
                      ..+..+.+|+++|.-.+|||||+ -+..++.
T Consensus       128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeL  158 (641)
T KOG0463|consen  128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGEL  158 (641)
T ss_pred             CccceeEEEEEEecccCCcceeEeeeeeccc
Confidence            44567899999999999999999 8876543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.50  E-value=0.00099  Score=61.80  Aligned_cols=93  Identities=16%  Similarity=0.164  Sum_probs=49.2

Q ss_pred             EEEEEEEeCCCCCCccc-chh---hh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFD-HVP---IA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~-~~~---~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      .+.+.|+||+|...... +..   .+  ..+.+-++||.|.+-...-   ....+.+.+.  -.+--+|.||.|-     
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~--~~~~g~IlTKlD~-----  251 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS--VDVGSVIITKLDG-----  251 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc--cCCcEEEEECccC-----
Confidence            46788999999765322 111   11  2356789999998754221   1112222211  1233699999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                       ..+   --.+...+...+.|+.+++.  |+++++
T Consensus       252 -~ar---gG~aLs~~~~t~~PI~fig~--Ge~v~D  280 (429)
T TIGR01425       252 -HAK---GGGALSAVAATKSPIIFIGT--GEHIDD  280 (429)
T ss_pred             -CCC---ccHHhhhHHHHCCCeEEEcC--CCChhh
Confidence             111   22244445556766655543  344444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.48  E-value=0.0011  Score=58.24  Aligned_cols=93  Identities=11%  Similarity=0.104  Sum_probs=64.9

Q ss_pred             cchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023335          162 DHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT  240 (283)
Q Consensus       162 ~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~  240 (283)
                      .+.+--..+.|-.++|+++.+++ +..-+.+++-.+.  .....||||.||+||   +++.....  ++.......+|..
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae--~~gi~pvIvlnK~DL---~~~~~~~~--~~~~~~y~~~gy~  143 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE--AGGIEPVIVLNKIDL---LDDEEAAV--KELLREYEDIGYP  143 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH--HcCCcEEEEEEcccc---CcchHHHH--HHHHHHHHhCCee
Confidence            34444445678888888888876 4444555554433  345678999999998   33322211  5566777888999


Q ss_pred             EEEEcCCCCcCHHHHHHHHHH
Q 023335          241 LFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       241 ~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      .+.+|++++++++++.+.+..
T Consensus       144 v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         144 VLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             EEEecCcCcccHHHHHHHhcC
Confidence            999999999999998887653

>PRK13695 putative NTPase; Provisional

Probab=97.46  E-value=0.003  Score=51.37  Aligned_cols=20  Identities=40%  Similarity=0.644  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +||++.|.+|+|||||+ .+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~   21 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIA   21 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999 754

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.45  E-value=0.00084  Score=61.96  Aligned_cols=118  Identities=20%  Similarity=0.253  Sum_probs=75.4

Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhh----------HHHHHHHHHHHHhH--CCCCceEEEeecCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT----------LNSIVGWYSEARKW--NQTAIPILIGTKFD  213 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s----------~~~~~~~~~~i~~~--~~~~~~ilvgnK~D  213 (283)
                      ...+.++|++|+...+.-|..++.+++++|||+++++-+-          +.+.....+.+-..  ..+.++||+.||.|
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D  314 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID  314 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence            3557889999999888899999999999999999875321          33333444444432  23566789999999


Q ss_pred             CCCC-----------CCCCccc--chHHHHHHHHHHc--------C--C--cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          214 DFVR-----------LPPDLQW--TIATQARAYAKAM--------K--A--TLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       214 L~~~-----------l~~~~~~--~~~~~~~~~~~~~--------~--~--~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ++..           +++-...  ...+.+.++.+..        .  -  .+..++|.+..++..+|+.+.+.|
T Consensus       315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            6321           1111111  1234444444321        1  2  244699999999999999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.39  E-value=0.0007  Score=44.20  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=31.4

Q ss_pred             cCcEEEEEEECCChh--hHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          170 DAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       170 ~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      =.+++++++|++..+  |.++-..++++++..-++.|.++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            357899999999765  45666688999999988888999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.37  E-value=0.00086  Score=52.60  Aligned_cols=103  Identities=12%  Similarity=0.024  Sum_probs=60.3

Q ss_pred             EEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh
Q 023335          105 LLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  183 (283)
Q Consensus       105 vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~  183 (283)
                      .-|.+|+|||++. .+...-......+.-++...   ......+.+.++|+++..  .......+..+|.++++.+.+ .
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-P   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-h
Confidence            4577899999988 65322111111111111110   001112668899999743  334456789999999999875 4


Q ss_pred             hhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          184 CTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       184 ~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      .++..+...++.+..........+|.|+++
T Consensus        79 ~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~  108 (139)
T cd02038          79 TSITDAYALIKKLAKQLRVLNFRVVVNRAE  108 (139)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            455555555555554443445569999998

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.0013  Score=58.33  Aligned_cols=148  Identities=11%  Similarity=0.115  Sum_probs=92.6

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhc-------C---ccc--cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVG-------N---EQE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~-------~---~~~--~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      +....+|--||.-.-|||||- .+..       .   +|.  +.-|   ..|+.+....+.+....-.+.-.|+||+..|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            445788999999999999998 6642       1   111  1111   3467777777777766666777899999887


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC-cccchHHHHHHHHHHcCC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-LQWTIATQARAYAKAMKA  239 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-~~~~~~~~~~~~~~~~~~  239 (283)
                      ....-.-..+.|+.|||+..+|..--+. ++.+-..++. .-.-+++..||.|+   .++. ..+.++-+++++...+|+
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQV-GV~~ivvfiNKvD~---V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQV-GVKHIVVFINKVDL---VDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHc-CCceEEEEEecccc---cCCHHHHHHHHHHHHHHHHHcCC
Confidence            5433333457799999999998532111 2222222221 12233577999997   4232 233347788999999874


Q ss_pred             -----cEEEEc---CCCC
Q 023335          240 -----TLFFSS---ATHN  249 (283)
Q Consensus       240 -----~~~e~S---a~~~  249 (283)
                           +.+.-|   |..|
T Consensus       206 ~Gd~~PvI~GSAL~ALeg  223 (449)
T KOG0460|consen  206 DGDNTPVIRGSALCALEG  223 (449)
T ss_pred             CCCCCCeeecchhhhhcC
Confidence                 677644   4555

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.34  E-value=0.00071  Score=54.34  Aligned_cols=64  Identities=8%  Similarity=-0.101  Sum_probs=37.1

Q ss_pred             EEEEEEEeCCCCCCcccchhh--------hcccCcEEEEEEECCChhhH-HHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPI--------ACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      .....+.|++|...-..+...        ..-..|.++.++|..+-... .+...+..++..     --+||.||+||
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----ADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----CCEEEEecccC
Confidence            345678899997643333222        22367899999997543321 112233344432     23789999994

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.32  E-value=0.00036  Score=63.30  Aligned_cols=54  Identities=13%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccc--ccccc---ce--eeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQE--RSLQM---AG--LNLINKTLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~--~~~~t---~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      ++|+|.+|||||||| .++.....  ...+.   .|  .+.....+.+++..   .++||||-..
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            799999999999999 98865433  22221   01  11222333343222   5789999654

>PRK12288 GTPase RsgA; Reviewed

Probab=97.32  E-value=0.00028  Score=64.01  Aligned_cols=56  Identities=13%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccc--ccccc---cee--eeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~--~~~~t---~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  161 (283)
                      ++++|.+|||||||| ++++....  ...+.   .|-  +....-+.+++..   .++||||-..+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            789999999999999 99876533  22221   111  1122233343222   479999977653

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.29  E-value=0.0016  Score=61.32  Aligned_cols=139  Identities=14%  Similarity=0.216  Sum_probs=75.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      +..+-|+|+|++|+|||||| .++..-...... ..|     -...+.|+.-.+.+.+++.  ....+.. ..+-||.++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--DLHQMID-VAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--HHHHHHh-HHHhhheeE
Confidence            34677889999999999999 776532222111 111     1122457778889999883  2222222 346799999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHH--HHHHHHc-CCcEEEEcCCC
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQA--RAYAKAM-KATLFFSSATH  248 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~--~~~~~~~-~~~~~e~Sa~~  248 (283)
                      |.+|.+-.--.+. -.+++-+..+. -..++-|+|..||+...  ...+.+...+  +-|.+-+ |+.+|..|-..
T Consensus       139 LlIdgnfGfEMET-mEFLnil~~HG-mPrvlgV~ThlDlfk~~--stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         139 LLIDGNFGFEMET-MEFLNILISHG-MPRVLGVVTHLDLFKNP--STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EEeccccCceehH-HHHHHHHhhcC-CCceEEEEeecccccCh--HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            9999864321111 12334333322 22224689999984211  1111111111  1222222 67888888653

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.26  E-value=0.0014  Score=61.18  Aligned_cols=91  Identities=15%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCCCCcccc-----hh-hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDH-----VP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLP  219 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~-----~~-~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~  219 (283)
                      ..+.|+||+|.......     .. ..+-.+|.+++|+|.+...   +.   ++.++.+....++ -+|.||.|-     
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a---v~~a~~F~~~l~i~gvIlTKlD~-----  244 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA---KNQAKAFHEAVGIGGIIITKLDG-----  244 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH---HHHHHHHHhcCCCCEEEEecccC-----
Confidence            36789999997654211     11 1134678999999987642   22   2223333322233 488999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                       ..   .--.+...+...+.|+.+++.  |+++++
T Consensus       245 -~a---~~G~~ls~~~~~~~Pi~fig~--Ge~v~D  273 (437)
T PRK00771        245 -TA---KGGGALSAVAETGAPIKFIGT--GEKIDD  273 (437)
T ss_pred             -CC---cccHHHHHHHHHCcCEEEEec--CCCccc
Confidence             11   134456666777888777654  444443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.23  E-value=0.0026  Score=58.11  Aligned_cols=92  Identities=22%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             EEEEEEEeCCCCCCcccchhh---hc---ccCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCCC-Cc-e-EEEeecCCCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPI---AC---KDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQT-AI-P-ILIGTKFDDF  215 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~---~~---~~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~-~~-~-ilvgnK~DL~  215 (283)
                      ...+.++||+|..........   .+   ....-.+||.+.+.. +...++..-+......... .+ + =+|.||.|- 
T Consensus       215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE-  293 (374)
T PRK14722        215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE-  293 (374)
T ss_pred             CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc-
Confidence            346788999997654322111   12   233456889998764 3344332222222111111 12 2 388899993 


Q ss_pred             CCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335          216 VRLPPDLQWTIATQARAYAKAMKATLFFSSA  246 (283)
Q Consensus       216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  246 (283)
                           .   ...-.+..++...+.++.+++.
T Consensus       294 -----t---~~~G~~l~~~~~~~lPi~yvt~  316 (374)
T PRK14722        294 -----A---SNLGGVLDTVIRYKLPVHYVST  316 (374)
T ss_pred             -----C---CCccHHHHHHHHHCcCeEEEec
Confidence                 1   1244566677777888776654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.22  E-value=0.0003  Score=56.45  Aligned_cols=56  Identities=18%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--cccc-c--ce--eeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      -++++|.+|||||||+ .++...-.  .... .  .|  .......+.+++..   .+.||||-..+
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~  100 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF  100 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence            5889999999999999 88876322  1111 1  11  11122344443322   56899996553

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.17  E-value=0.00065  Score=58.67  Aligned_cols=55  Identities=16%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--ccccc-c--e--eeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQM-A--G--LNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t-~--~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      .++++|.+|||||||+ ++.+....  ...+. .  |  .+.....+.+++.    .++||||-..+
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~  184 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEF  184 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCcccc
Confidence            6889999999999999 88865432  12211 0  1  1112222333331    57999997654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.17  E-value=0.0037  Score=59.28  Aligned_cols=91  Identities=10%  Similarity=0.069  Sum_probs=50.5

Q ss_pred             EEEEEEEeCCCCCCcccchhh---hcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPI---ACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~---~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      .+.+.|+||+|..........   .+.  .....++|++.+.  +..++...++.+..   ..+--+|.||.|.      
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDE------  496 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDE------  496 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcC------
Confidence            467889999996543211100   011  1234567777664  34444444444332   2344699999993      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      .   .....+..+....+.++.+++.  |++|
T Consensus       497 t---~~lG~aLsv~~~~~LPI~yvt~--GQ~V  523 (559)
T PRK12727        497 T---GRFGSALSVVVDHQMPITWVTD--GQRV  523 (559)
T ss_pred             c---cchhHHHHHHHHhCCCEEEEeC--CCCc
Confidence            1   1235566667777888777654  4444

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.14  E-value=0.0015  Score=53.03  Aligned_cols=84  Identities=15%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             EEEEEEEeCCCCCCccc-c---hhhh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFD-H---VPIA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~-~---~~~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      ...+.+.|++|...+.. .   ...+  ....+.+++|+|.....   +...+...+.+...  ..-+|.||.|..    
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~--~~~viltk~D~~----  152 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG--ITGVILTKLDGD----  152 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC--CCEEEEECCcCC----
Confidence            34577899999743211 1   1111  13489999999986433   22234444433322  335777999941    


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEE
Q 023335          220 PDLQWTIATQARAYAKAMKATLFF  243 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e  243 (283)
                      .     ....+...+...++++..
T Consensus       153 ~-----~~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         153 A-----RGGAALSIRAVTGKPIKF  171 (173)
T ss_pred             C-----CcchhhhhHHHHCcCeEe
Confidence            1     122233366666666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK13796 GTPase YqeH; Provisional

Probab=97.13  E-value=0.00067  Score=62.05  Aligned_cols=53  Identities=13%  Similarity=0.286  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcc-------ccccccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQ-------ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  158 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  158 (283)
                      .++.++|.+|||||||+ +++....       .+..|  |.+.....+.+++.   ..++||||-.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~p--GTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFP--GTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCC--CccceeEEEEcCCC---cEEEECCCcc
Confidence            47999999999999999 9985431       13333  22222334444332   3689999964

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.13  E-value=0.00085  Score=61.27  Aligned_cols=54  Identities=17%  Similarity=0.316  Sum_probs=35.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcc------c-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      .+++++|.+|||||||+ ++++...      . +..|.++.+  ...+.+++.   +.++||||-..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~~---~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDDG---HSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCCC---CEEEECCCCCC
Confidence            48999999999999999 9887432      2 344432222  223344221   46899999654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.10  E-value=0.0019  Score=47.73  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=49.4

Q ss_pred             EEEEc-CCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          103 ISLLG-DCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       103 I~vlG-~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      |++.| ..|+||||+. .+...--....++.-.+       .+. .+.+.++|+++...  ......+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d-------~d~-~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLID-------LDP-QYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe-------CCC-CCCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccC
Confidence            56667 5689999998 65432111222222221       121 16688899998653  2333677889999999976


Q ss_pred             CChhhHHHHHHHHH
Q 023335          181 TSRCTLNSIVGWYS  194 (283)
Q Consensus       181 ~~~~s~~~~~~~~~  194 (283)
                      + ..++..+..+++
T Consensus        72 ~-~~s~~~~~~~~~   84 (104)
T cd02042          72 S-PLDLDGLEKLLE   84 (104)
T ss_pred             C-HHHHHHHHHHHH
Confidence            4 556666666655

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.07  E-value=0.0016  Score=54.33  Aligned_cols=91  Identities=15%  Similarity=0.164  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCCCCcccc----hhhhc--ccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~----~~~~~--~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      +.+.++||+|.......    ...++  ...+-+++|.|.+... ..+.+...++.      -.+-=+|.||.|-     
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~------~~~~~lIlTKlDe-----  152 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEA------FGIDGLILTKLDE-----  152 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHH------SSTCEEEEESTTS-----
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhc------ccCceEEEEeecC-----
Confidence            55788999997654321    11121  2567899999987653 23322222221      1123588999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                       .   ...-.+..++...+.++-.+|.  |++|++
T Consensus       153 -t---~~~G~~l~~~~~~~~Pi~~it~--Gq~V~D  181 (196)
T PF00448_consen  153 -T---ARLGALLSLAYESGLPISYITT--GQRVDD  181 (196)
T ss_dssp             -S---STTHHHHHHHHHHTSEEEEEES--SSSTTG
T ss_pred             -C---CCcccceeHHHHhCCCeEEEEC--CCChhc
Confidence             1   1134566677778888777653  444433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.00  E-value=0.0013  Score=55.35  Aligned_cols=67  Identities=24%  Similarity=0.227  Sum_probs=40.7

Q ss_pred             CCCceEEEeecCCCCCC----------CCCC-cccchHHHHHHHHHHc----C-----Cc-EEEEcCCCCcCHHHHHHHH
Q 023335          201 QTAIPILIGTKFDDFVR----------LPPD-LQWTIATQARAYAKAM----K-----AT-LFFSSATHNINVNKIFKFI  259 (283)
Q Consensus       201 ~~~~~ilvgnK~DL~~~----------l~~~-~~~~~~~~~~~~~~~~----~-----~~-~~e~Sa~~~~~v~~lf~~l  259 (283)
                      .+..+|+..||.||.+.          +|+- ......+.+++|.-++    +     +. -.++.|.+-+||.-+|..+
T Consensus       265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV  344 (359)
T KOG0085|consen  265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV  344 (359)
T ss_pred             cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence            35677899999997321          1111 1112244455554432    2     11 2348888999999999998


Q ss_pred             HHHHhCCc
Q 023335          260 MAKLFNLP  267 (283)
Q Consensus       260 ~~~i~~~~  267 (283)
                      -..+++..
T Consensus       345 kDtiLq~~  352 (359)
T KOG0085|consen  345 KDTILQLN  352 (359)
T ss_pred             HHHHHHhh
Confidence            88877643

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.97  E-value=0.00094  Score=62.11  Aligned_cols=56  Identities=18%  Similarity=0.291  Sum_probs=43.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  158 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  158 (283)
                      .+.|-+||-|||||||+| .+++.+-.+-..|.|-+-.-.++.+..   .+.+.|+||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            578889999999999999 999999886666666655445555543   35678999954

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.96  E-value=0.011  Score=54.11  Aligned_cols=151  Identities=14%  Similarity=0.136  Sum_probs=80.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccce---eee---------------eEEEEEE--C----------CeEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAG---LNL---------------INKTLMV--Q----------GARI  147 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~---~~~---------------~~~~~~~--~----------~~~~  147 (283)
                      .-.|+++|+.||||||-+ ++...-.. .....++   .|.               ....+.+  +          -..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            456889999999999988 76443321 1111111   110               0000110  0          1245


Q ss_pred             EEEEEeCCCCCCcccch----hhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCC
Q 023335          148 AFSIWDVGGDSRSFDHV----PIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPP  220 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~~~~----~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~  220 (283)
                      .+.+.||.|...+....    ..++.  ...-+.||++++..  .+++...++.+..    .++ =++.||.|-      
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~~i~~~I~TKlDE------  350 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----FPIDGLIFTKLDE------  350 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----CCcceeEEEcccc------
Confidence            68899999987765432    22322  23456677777654  3444444444322    222 489999993      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH-HH----HHHHHHHHhCCc
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSSATHNINVN-KI----FKFIMAKLFNLP  267 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~-~l----f~~l~~~i~~~~  267 (283)
                         ....-....+..+.+.+.-.++  +|++|. ++    -+++++.++...
T Consensus       351 ---T~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~~  397 (407)
T COG1419         351 ---TTSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILGTF  397 (407)
T ss_pred             ---cCchhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhccc
Confidence               1224455566666666655543  344442 22    345666665543

>TIGR00959 ffh signal recognition particle protein

Probab=96.95  E-value=0.0033  Score=58.58  Aligned_cols=93  Identities=14%  Similarity=0.083  Sum_probs=53.7

Q ss_pred             EEEEEEEeCCCCCCccc-chhh-----hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFD-HVPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRL  218 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~-~~~~-----~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l  218 (283)
                      .+.+.|.||+|...... +...     ..-..+.++||+|.+..   ++...+...+...   ..+ =+|.||.|-    
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~---v~i~giIlTKlD~----  251 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNER---LGLTGVVLTKLDG----  251 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhh---CCCCEEEEeCccC----
Confidence            35688999999654321 1111     12357888999998743   3333344443322   223 488999993    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                        ..   ..-.+..++...++|+.+++.  |++++++
T Consensus       252 --~~---~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl  281 (428)
T TIGR00959       252 --DA---RGGAALSVRSVTGKPIKFIGV--GEKIDDL  281 (428)
T ss_pred             --cc---cccHHHHHHHHHCcCEEEEeC--CCChhhC
Confidence              11   123366777778888877654  4444443

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=96.93  E-value=0.0028  Score=59.02  Aligned_cols=92  Identities=15%  Similarity=0.097  Sum_probs=51.0

Q ss_pred             EEEEEEEeCCCCCCccc-chh---hh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFD-HVP---IA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRL  218 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~-~~~---~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l  218 (283)
                      .+.+.|.||+|...... +..   .+  .-..+.+++|.|.+..   ++..+....+..   ...+ -+|.||.|-    
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~---~~~i~giIlTKlD~----  252 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNE---ALGLTGVILTKLDG----  252 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHh---hCCCCEEEEeCccC----
Confidence            35688999999654321 111   11  1256778999997643   233333333332   2223 478899993    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                        ..+   .-.+...+...++|+.+++.  |+++++
T Consensus       253 --~~r---gG~alsi~~~~~~PI~fig~--Ge~v~D  281 (433)
T PRK10867        253 --DAR---GGAALSIRAVTGKPIKFIGT--GEKLDD  281 (433)
T ss_pred             --ccc---ccHHHHHHHHHCcCEEEEeC--CCcccc
Confidence              111   23366667777888777654  444443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.91  E-value=0.00098  Score=58.93  Aligned_cols=57  Identities=14%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccc-c--ce--eeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      -.++++|.+|||||||+ .+++....  ...+ +  .|  .+.....+...+.   ..++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            46899999999999999 88775433  1111 1  11  1122223333322   247999998764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.90  E-value=0.0039  Score=57.16  Aligned_cols=86  Identities=10%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCCCCcccc----hhhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~----~~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      +.+.|.||+|.......    ...++  ...+.++||.|.+-..  +++..+++.+   ..-.+-=+|.||.|-      
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F---~~~~idglI~TKLDE------  389 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF---KDIHIDGIVFTKFDE------  389 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHh---cCCCCCEEEEEcccC------
Confidence            56889999997553221    11222  2346788998875332  2333333333   322222499999993      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcC
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSSA  246 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa  246 (283)
                      ..   ..-.+..++...++|+..++.
T Consensus       390 T~---k~G~iLni~~~~~lPIsyit~  412 (436)
T PRK11889        390 TA---SSGELLKIPAVSSAPIVLMTD  412 (436)
T ss_pred             CC---CccHHHHHHHHHCcCEEEEeC
Confidence            11   134456667777888776643

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.86  E-value=0.007  Score=56.17  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=56.0

Q ss_pred             EEEEEEeCCCCCCcccc----hhhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~----~~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      ..+.+.||+|.......    ...+.  ....-.+||.|.+...  +.+..++..   +..-.+-=+|.||.|-      
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~---f~~~~~~~~I~TKlDE------  338 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISA---YQGHGIHGCIITKVDE------  338 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHH---hcCCCCCEEEEEeeeC------
Confidence            35678999997653221    11111  2234678899987432  223333322   2222222499999993      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhC
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFN  265 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~l----f~~l~~~i~~  265 (283)
                      .   ...-.+..++...+.++.+++.  |++| +++    -+.+++.++.
T Consensus       339 t---~~~G~~l~~~~~~~lPi~yvt~--Gq~VP~Dl~~a~~~~lv~~ll~  383 (420)
T PRK14721        339 A---ASLGIALDAVIRRKLVLHYVTN--GQKVPEDLHEANSRYLLHRIFK  383 (420)
T ss_pred             C---CCccHHHHHHHHhCCCEEEEEC--CCCchhhhhhCCHHHHHHHHhc
Confidence            1   1245566777778888777654  4555 333    2345555554

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.84  E-value=0.0095  Score=48.20  Aligned_cols=84  Identities=8%  Similarity=-0.028  Sum_probs=51.1

Q ss_pred             EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH
Q 023335          148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  227 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~  227 (283)
                      .+.++|+++....  .....+..+|.+|++.+.+ ..++..+..+++.++... .....+|.|+.|-    .   .....
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~~-~~~~~iv~N~~~~----~---~~~~~  132 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEALG-IKVVGVIVNRVRP----D---MVEGG  132 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHcC-CceEEEEEeCCcc----c---ccchh
Confidence            5888999976432  3445578999999998765 345666666666665522 2233589999983    1   11112


Q ss_pred             HHHHHHHHHcCCcEE
Q 023335          228 TQARAYAKAMKATLF  242 (283)
Q Consensus       228 ~~~~~~~~~~~~~~~  242 (283)
                      +....+.+.++.+++
T Consensus       133 ~~~~~~~~~~~~~v~  147 (179)
T cd02036         133 DMVEDIEEILGVPLL  147 (179)
T ss_pred             hHHHHHHHHhCCCEE
Confidence            223455555676654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.0028  Score=65.24  Aligned_cols=109  Identities=17%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             EEEEcCCCCcHHHhHhhhcCccc--cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCC--------cccchhhh--
Q 023335          103 ISLLGDCQIGKTSFVKYVGNEQE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIA--  167 (283)
Q Consensus       103 I~vlG~~~vGKSSLi~~~~~~~~--~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~--  167 (283)
                      -+|||++|+||||++.-.+-+|.  +...   ..+.......--+.+   .-.++||+|...        ....|..+  
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            57999999999999944555444  1111   111111111111122   234679988321        12233322  


Q ss_pred             -------cccCcEEEEEEECCChhh---------HHHHHHHHHHHHhHCCC-CceEEEeecCCC
Q 023335          168 -------CKDAVAILFMFDLTSRCT---------LNSIVGWYSEARKWNQT-AIPILIGTKFDD  214 (283)
Q Consensus       168 -------~~~ad~iilv~D~~~~~s---------~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL  214 (283)
                             .+..++||+..|+.+--+         ...++.=++++...-.- .|+.|+.||.|+
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl  268 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL  268 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence                   256799999999865321         11223335566555443 455699999998

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.78  E-value=0.0074  Score=59.76  Aligned_cols=105  Identities=17%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCCCCcccc-h---hhh--cccCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDH-V---PIA--CKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~-~---~~~--~~~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      +.+.|+||+|....... .   ...  ....+-++||.|.+.. +.+.++   .+.++......+-=+|.||.|-     
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~i~glIlTKLDE-----  335 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGEDVDGCIITKLDE-----  335 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCCCCEEEEeccCC-----
Confidence            46789999995432211 1   111  1234567899998753 334333   2222221111122488999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHHH----HHHHHHHhC
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKIF----KFIMAKLFN  265 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~lf----~~l~~~i~~  265 (283)
                       ..   ..-.+..+....++++.+++.  |++| +++.    +.+++.++.
T Consensus       336 -t~---~~G~iL~i~~~~~lPI~yit~--GQ~VPdDL~~a~~~~lv~~ll~  380 (767)
T PRK14723        336 -AT---HLGPALDTVIRHRLPVHYVST--GQKVPEHLELAQADELVDRAFA  380 (767)
T ss_pred             -CC---CccHHHHHHHHHCCCeEEEec--CCCChhhcccCCHHHHHHHHhc
Confidence             11   134566667777888777653  5566 4442    345566655

>PRK00098 GTPase RsgA; Reviewed

Probab=96.77  E-value=0.0026  Score=56.57  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      -.++++|.+|||||||+ .+++..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            35889999999999999 887654

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.73  E-value=0.0068  Score=48.12  Aligned_cols=58  Identities=12%  Similarity=0.017  Sum_probs=34.8

Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      .+.+.|.||+|....  . ..++..||-+|++...+-.+.+.       .++-..-..--+++.||.|
T Consensus        91 ~~D~iiIDtaG~~~~--~-~~~~~~Ad~~ivv~tpe~~D~y~-------~~k~~~~~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS--E-VDIASMADTTVVVMAPGAGDDIQ-------AIKAGIMEIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh--h-hhHHHhCCEEEEEECCCchhHHH-------HhhhhHhhhcCEEEEeCCC
Confidence            466888999886532  2 34788999888887655222221       1111111223489999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.73  E-value=0.011  Score=55.75  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=55.3

Q ss_pred             EEEEEEeCCCCCCcccc---hhhhccc---CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDH---VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~---~~~~~~~---ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      ..+.++||+|.......   .-..+..   ..-.+||.|.+...  ..+.   +.++.+....+--+|.||.|-      
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~---~i~~~f~~~~~~g~IlTKlDe------  403 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLN---EVVQAYRGPGLAGCILTKLDE------  403 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHH---HHHHHhccCCCCEEEEeCCCC------
Confidence            34678999995543211   1111121   12267888886432  2222   222333333333588899993      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHHH----HHHHHHHhCC
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSSATHNINV-NKIF----KFIMAKLFNL  266 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~lf----~~l~~~i~~~  266 (283)
                      .   ...-.+..++...++++.+++  +|++| +++-    +.+++.++..
T Consensus       404 t---~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~  449 (484)
T PRK06995        404 A---ASLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA  449 (484)
T ss_pred             c---ccchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence            1   124556677778888877765  35566 4442    3455666553

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.72  E-value=0.022  Score=53.19  Aligned_cols=104  Identities=13%  Similarity=0.156  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCCCCccc----chhhhcc---cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFD----HVPIACK---DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~----~~~~~~~---~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      +.+.++||+|......    ....++.   ...-+++|.+.+-..  ..+...+..+   ..-.+-=+|.||.|-     
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f---~~~~~~~vI~TKlDe-----  369 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF---SRLPLDGLIFTKLDE-----  369 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh---CCCCCCEEEEecccc-----
Confidence            5688999999765431    1222333   234667888876431  2223323322   211122499999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhCC
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFNL  266 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~l----f~~l~~~i~~~  266 (283)
                          ......+..++...+.++.+++.  |.+| +++    -+.+++.++..
T Consensus       370 ----t~~~G~i~~~~~~~~lPv~yit~--Gq~VpdDl~~a~~~~l~~~ll~~  415 (424)
T PRK05703        370 ----TSSLGSILSLLIESGLPISYLTN--GQRVPDDIKVANPEELVRLLLGG  415 (424)
T ss_pred             ----cccccHHHHHHHHHCCCEEEEeC--CCCChhhhhhCCHHHHHHHHhcc
Confidence                11234577777888888877654  4444 333    23455555543

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.65  E-value=0.003  Score=55.57  Aligned_cols=57  Identities=18%  Similarity=0.201  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--cccc---cce--eeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQ---MAG--LNLINKTLMVQGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~---t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  161 (283)
                      -.+++|.+|||||||+ ++....-.  ...+   .-|  .+....-+.+++..   .+.||||-..+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            4679999999999999 88753221  1111   011  12223344453222   357999976643

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.0025  Score=57.93  Aligned_cols=131  Identities=11%  Similarity=0.133  Sum_probs=87.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC--------ccc-ccc--------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN--------EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD  162 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~--------~~~-~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~  162 (283)
                      -+|-++..-.+||||.. |++.-        ... ...        ...|+...+..+.++-+...++++||+|+-.|+-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            35667788889999998 76421        111 111        1226666677777777778899999999999999


Q ss_pred             chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335          163 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  241 (283)
Q Consensus       163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
                      ....+++--|+++.|||.+-.-.-+.+.-|.+.-+.   +.|-+...||+|.   +.    ..-+......-+++++.-
T Consensus       118 everclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~finkmdk---~~----anfe~avdsi~ekl~ak~  186 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINKMDK---LA----ANFENAVDSIEEKLGAKA  186 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhhhhh---hh----hhhhhHHHHHHHHhCCce
Confidence            899999999999999999866544555567654221   3344788999994   11    111334444555666643

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=96.63  E-value=0.029  Score=52.98  Aligned_cols=64  Identities=16%  Similarity=0.111  Sum_probs=38.0

Q ss_pred             EEEEEeCCCCC-------------CcccchhhhcccCcEEEEEEECCChhh-HHHHHHHHHHHHhHCCCC-ceEEEeecC
Q 023335          148 AFSIWDVGGDS-------------RSFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTA-IPILIGTKF  212 (283)
Q Consensus       148 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~iilv~D~~~~~s-~~~~~~~~~~i~~~~~~~-~~ilvgnK~  212 (283)
                      .+.+.|.||--             ....+...|+.+.++||+|+--.+-+. -.++.++.   .+..|.. ..|+|.+|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLV---sq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLV---SQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHH---HhcCCCCCeeEEEEeec
Confidence            46778888832             123456778899999999984322221 11222222   2223433 348999999


Q ss_pred             CC
Q 023335          213 DD  214 (283)
Q Consensus       213 DL  214 (283)
                      ||
T Consensus       490 Dl  491 (980)
T KOG0447|consen  490 DL  491 (980)
T ss_pred             ch
Confidence            97

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.57  E-value=0.015  Score=41.53  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc-hhhhcccCcEEEEEEEC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDL  180 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ad~iilv~D~  180 (283)
                      +++.|.+|+|||++. .+...--...+.         ...++    .+.+.|+++....... .......+|.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999 664322111111         22222    5778999976543221 14566788999999886


Q ss_pred             CCh
Q 023335          181 TSR  183 (283)
Q Consensus       181 ~~~  183 (283)
                      +..
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            643

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.53  E-value=0.015  Score=53.83  Aligned_cols=132  Identities=14%  Similarity=0.161  Sum_probs=68.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc-cc----------cccc------------cceeeeeEEE-E-----EECCeEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE-QE----------RSLQ------------MAGLNLINKT-L-----MVQGARIAFS  150 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~-~~----------~~~~------------t~~~~~~~~~-~-----~~~~~~~~l~  150 (283)
                      .-++++|++||||||++ ++.... ..          +.+.            ..++.+.... .     .+....+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            46889999999999999 886421 10          0100            0122211100 0     0011245678


Q ss_pred             EEeCCCCCCccc-c---hhhhcc-----cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335          151 IWDVGGDSRSFD-H---VPIACK-----DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  221 (283)
Q Consensus       151 i~Dt~G~~~~~~-~---~~~~~~-----~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~  221 (283)
                      ++||+|...... .   ...+++     ...-.+||.|.+...  +++...   +..+..-.+-=+|.||.|-      .
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~---~~~f~~~~~~glIlTKLDE------t  372 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTV---LKAYESLNYRRILLTKLDE------A  372 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHH---HHHhcCCCCCEEEEEcccC------C
Confidence            899999653221 1   111221     234678999987653  122222   2222212222599999993      1


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcC
Q 023335          222 LQWTIATQARAYAKAMKATLFFSSA  246 (283)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~e~Sa  246 (283)
                      .   ..-.+..++...+.|+..++.
T Consensus       373 ~---~~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        373 D---FLGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             C---CccHHHHHHHHHCCCEEEEec
Confidence            1   134466667777888776654

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=96.52  E-value=0.07  Score=43.12  Aligned_cols=145  Identities=13%  Similarity=0.130  Sum_probs=91.8

Q ss_pred             CCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhccc
Q 023335           92 YDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD  170 (283)
Q Consensus        92 ~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  170 (283)
                      ++..+......|+++|..+.++..|. .++..+-.         +. ..+..-. .    +-+ +.  +.....    -.
T Consensus         7 ~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~---------~~-l~Vh~a~-s----LPL-p~--e~~~lR----pr   64 (176)
T PF11111_consen    7 FDKLPELNTATILLVGTEEALLQQLAEAMLEEDKE---------FK-LKVHLAK-S----LPL-PS--ENNNLR----PR   64 (176)
T ss_pred             cccCCCcceeEEEEecccHHHHHHHHHHHHhhccc---------ee-EEEEEec-c----CCC-cc--cccCCC----ce
Confidence            34455555789999999999999999 88752210         10 0111100 0    001 11  111111    35


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      .|.|+|++|.++..|++.++.-+..+........+.++++-..-     .+...+..+++.+++..+.++++.+--.+.+
T Consensus        65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~-----~~~~sv~~~~V~kla~~y~~plL~~~le~~~  139 (176)
T PF11111_consen   65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGR-----ESHCSVHPNEVRKLAATYNSPLLFADLENEE  139 (176)
T ss_pred             eEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCc-----ccccccCHHHHHHHHHHhCCCEEEeecccch
Confidence            79999999999999999988777666544444555555555542     2334455899999999999999988777776


Q ss_pred             CHHHHHHHHHHHH
Q 023335          251 NVNKIFKFIMAKL  263 (283)
Q Consensus       251 ~v~~lf~~l~~~i  263 (283)
                      +...+=+.|++.+
T Consensus       140 ~~~~lAqRLL~~l  152 (176)
T PF11111_consen  140 GRTSLAQRLLRML  152 (176)
T ss_pred             HHHHHHHHHHHHH
Confidence            6665555555433

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.50  E-value=0.0043  Score=53.67  Aligned_cols=58  Identities=19%  Similarity=0.335  Sum_probs=41.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCcccccccc---ceeeeeEEEEE--ECCeEEEEEEEeCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQM---AGLNLINKTLM--VQGARIAFSIWDVGG  156 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t---~~~~~~~~~~~--~~~~~~~l~i~Dt~G  156 (283)
                      ..++|+.+|..|.|||||+ .+.+-.|.....+   .++.....++.  -.+..+++.+.||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            4789999999999999999 9999888732221   12223233333  356678899999998

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.49  E-value=0.0077  Score=44.86  Aligned_cols=96  Identities=11%  Similarity=0.085  Sum_probs=56.1

Q ss_pred             cCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh
Q 023335          107 GDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC  184 (283)
Q Consensus       107 G~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~  184 (283)
                      +..|+||||+. .+...-... ...+.-.|.....    +  ..+.+.|+++...  ......+..+|.++++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----~--~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----G--DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC----C--CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hH
Confidence            45779999988 653322111 2222222211110    1  1578899998653  23445678999999998754 55


Q ss_pred             hHHHHHHHHHHHHhHCCC--CceEEEeec
Q 023335          185 TLNSIVGWYSEARKWNQT--AIPILIGTK  211 (283)
Q Consensus       185 s~~~~~~~~~~i~~~~~~--~~~ilvgnK  211 (283)
                      ++..+..+++.+++....  ....+|.|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            667777777777665432  233477775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.42  E-value=0.005  Score=49.98  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ||.+-|.+|+|||||+ +++..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999 87643

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.0089  Score=55.73  Aligned_cols=110  Identities=16%  Similarity=0.241  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc------------cc---cccccceeeeeEEEEEE----------------CCeEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE------------QE---RSLQMAGLNLINKTLMV----------------QGARIA  148 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~------------~~---~~~~t~~~~~~~~~~~~----------------~~~~~~  148 (283)
                      -++.++-.-.-|||||. .++.+.            |.   ......++.+.+..+..                ++..+.
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            35667788888999999 886432            21   01111233333322221                355678


Q ss_pred             EEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       149 l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      ++++|.+|+-.|.+.....++-.|+.++|+|.-+.--.+.-.-+.+.+   .+...|+++.||.|
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~---~ERIkPvlv~NK~D  161 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI---AERIKPVLVMNKMD  161 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH---HhhccceEEeehhh
Confidence            999999999999999999999999999999987653222211122222   23567899999999

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=96.33  E-value=0.3  Score=45.17  Aligned_cols=153  Identities=12%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC--------ccc-----cccc---------cceeeeeE---EEEEE-CCeEEEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN--------EQE-----RSLQ---------MAGLNLIN---KTLMV-QGARIAFSIW  152 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~--------~~~-----~~~~---------t~~~~~~~---~~~~~-~~~~~~l~i~  152 (283)
                      .+=|-|+|+-.+|||||| ||..-        .+.     +..|         |+...|..   ..+.+ ++..+++.+.
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            466889999999999999 99642        111     1111         22222211   23344 4678889999


Q ss_pred             eCCCC--------C-----C------cccch----------hhhcc--cCcEEEEEEECC----ChhhHHHHH-HHHHHH
Q 023335          153 DVGGD--------S-----R------SFDHV----------PIACK--DAVAILFMFDLT----SRCTLNSIV-GWYSEA  196 (283)
Q Consensus       153 Dt~G~--------~-----~------~~~~~----------~~~~~--~ad~iilv~D~~----~~~s~~~~~-~~~~~i  196 (283)
                      |+.|-        .     +      |..-.          +..++  ..-++++.-|.+    .++.|.... +..+++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            98761        1     1      00000          11112  223555555544    245565553 566666


Q ss_pred             HhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC--CCcCHHHHHHHHHH
Q 023335          197 RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT--HNINVNKIFKFIMA  261 (283)
Q Consensus       197 ~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~--~~~~v~~lf~~l~~  261 (283)
                      +..  ++|.|++.|-.+       .......+...++.++++++.+.+++.  +.+.|..+++.++.
T Consensus       177 k~i--gKPFvillNs~~-------P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy  234 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTK-------PYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY  234 (492)
T ss_pred             HHh--CCCEEEEEeCCC-------CCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence            654  456788888877       223345677788888999999987775  34445555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.17  E-value=0.022  Score=52.13  Aligned_cols=92  Identities=12%  Similarity=0.135  Sum_probs=50.4

Q ss_pred             EEEEEEEeCCCCCCcccc----hhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFDH----VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~----~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      .+.+.+.||+|.......    ...+..  ..+.+++|.+.+.  ...++...+..   +..-.+--+|.||.|-     
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~---f~~l~i~glI~TKLDE-----  354 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK---LAEIPIDGFIITKMDE-----  354 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh---cCcCCCCEEEEEcccC-----
Confidence            357889999997543221    111222  3456677776532  22333333322   2222223599999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                       .   ...-.+..++...+.|+..+|.  |++|.
T Consensus       355 -T---~~~G~~Lsv~~~tglPIsylt~--GQ~Vp  382 (407)
T PRK12726        355 -T---TRIGDLYTVMQETNLPVLYMTD--GQNIT  382 (407)
T ss_pred             -C---CCccHHHHHHHHHCCCEEEEec--CCCCC
Confidence             1   1144566777778888777654  44444

>PRK08118 topology modulation protein; Reviewed

Probab=96.11  E-value=0.0038  Score=50.64  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ||+|+|.+|+|||||. ++..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999 6653

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.06  E-value=0.047  Score=44.39  Aligned_cols=86  Identities=16%  Similarity=0.054  Sum_probs=59.2

Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCccc
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW  224 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~  224 (283)
                      ..+.+.++|+++...  ......+..+|.++++...+ ..+...+..+++.+++..  .+..+|.||+|.    .    .
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~~--~~~~vV~N~~~~----~----~  157 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHFG--IPVGVVINKYDL----N----D  157 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHcC--CCEEEEEeCCCC----C----c
Confidence            356788999997543  23445678999999999876 446667777777666542  344699999994    1    1


Q ss_pred             chHHHHHHHHHHcCCcEEE
Q 023335          225 TIATQARAYAKAMKATLFF  243 (283)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~e  243 (283)
                      ...+++.++++.++++++-
T Consensus       158 ~~~~~~~~~~~~~~~~vl~  176 (179)
T cd03110         158 EIAEEIEDYCEEEGIPILG  176 (179)
T ss_pred             chHHHHHHHHHHcCCCeEE
Confidence            2355677788888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.04  E-value=0.004  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .||+|+|.||+||||+. ++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999 77665

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.00  E-value=0.0046  Score=46.81  Aligned_cols=20  Identities=20%  Similarity=0.278  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|+|.|.+||||||+. .+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999 7654

...

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=95.98  E-value=0.019  Score=52.15  Aligned_cols=161  Identities=11%  Similarity=0.038  Sum_probs=89.5

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCc----------cc---------ccc-----ccce------eeeeEEEEEECCe
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNE----------QE---------RSL-----QMAG------LNLINKTLMVQGA  145 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~----------~~---------~~~-----~t~~------~~~~~~~~~~~~~  145 (283)
                      +...++++++|.--+||||+- +++.-.          +.         ..|     .|..      -+.....-.+...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            345789999999999999987 764310          00         000     0111      0111111112233


Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHHHHHHHHH--HHHhHCCCCceEEEeecCCCCCC-CC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGWYS--EARKWNQTAIPILIGTKFDDFVR-LP  219 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~~~~~~~~--~i~~~~~~~~~ilvgnK~DL~~~-l~  219 (283)
                      .-.+.+.|.+|+..|-...-.-..+||..++|.++...+   .|+.=-+-.+  .+.+-..-...|++.||.|-... .+
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs  235 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS  235 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence            456889999999887554444457889999998874321   1222111111  12222223455889999995211 11


Q ss_pred             CCcccchHHHHHHHHHHcC------CcEEEEcCCCCcCHHHHHH
Q 023335          220 PDLQWTIATQARAYAKAMK------ATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~------~~~~e~Sa~~~~~v~~lf~  257 (283)
                      .++-....+.+..+.+..|      ..|+.+|..+|.++++.-.
T Consensus       236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            1111223455566666444      3478899999999988654

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.97  E-value=0.0078  Score=50.49  Aligned_cols=27  Identities=15%  Similarity=0.279  Sum_probs=21.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcC
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ......-|+|+|++|||||||+ .+...
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3344567889999999999999 88654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=95.96  E-value=0.022  Score=46.34  Aligned_cols=42  Identities=14%  Similarity=-0.011  Sum_probs=25.9

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          172 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       172 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      |++++|+|+.++.+-.+ ..+.+.+.....+.|.|+|.||+||
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL   42 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDL   42 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhc
Confidence            78999999987633211 1222222111234677999999997

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK07261 topology modulation protein; Provisional

Probab=95.93  E-value=0.0054  Score=49.90  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ||+|+|.+|+|||||. .+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            7999999999999999 7653

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.92  E-value=0.086  Score=46.16  Aligned_cols=92  Identities=13%  Similarity=0.213  Sum_probs=51.4

Q ss_pred             EEEEEEEeCCCCCCcccc-h---hhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFDH-V---PIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~-~---~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      .+.+.++||+|....... .   ..++  -..+-++||.|.+...  +++..++..   +..-.+-=+|.||.|-     
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~---f~~~~~~~~I~TKlDe-----  223 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITN---FKDIHIDGIVFTKFDE-----  223 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHH---hCCCCCCEEEEEeecC-----
Confidence            467889999997643211 1   1122  2446789999986432  233333333   3332222599999993     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                       ..   ..-.+..++...+.|+..++.  |++|.
T Consensus       224 -t~---~~G~~l~~~~~~~~Pi~~it~--Gq~vp  251 (270)
T PRK06731        224 -TA---SSGELLKIPAVSSAPIVLMTD--GQDVK  251 (270)
T ss_pred             -CC---CccHHHHHHHHHCcCEEEEeC--CCCCC
Confidence             11   133455666677888776643  44443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.90  E-value=0.0051  Score=47.93  Aligned_cols=18  Identities=28%  Similarity=0.416  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      |+++|.+|+|||||+ .+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            689999999999999 876

...

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=95.81  E-value=0.064  Score=45.55  Aligned_cols=46  Identities=11%  Similarity=0.031  Sum_probs=28.6

Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      ...+++|.+|.|.|.+- .|+....+.-+-..+.. -+++.+|.||.|
T Consensus       151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg-~k~i~~V~NKv~  196 (255)
T COG3640         151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG-IKRIFVVLNKVD  196 (255)
T ss_pred             ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC-CceEEEEEeecc
Confidence            34578999999999874 34444333322222211 245579999999

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.80  E-value=0.11  Score=48.01  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=52.1

Q ss_pred             EEEEEEEeCCCCCCcccc----hhhhccc--Cc-EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335          146 RIAFSIWDVGGDSRSFDH----VPIACKD--AV-AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL  218 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~----~~~~~~~--ad-~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l  218 (283)
                      .+.+.+.||+|......+    ...++..  .+ -.+||.|++..  .+.+...+   .++..-.+-=+|.||.|-    
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~---~~~~~~~~~~~I~TKlDe----  324 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIF---HQFSPFSYKTVIFTKLDE----  324 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHH---HHhcCCCCCEEEEEeccC----
Confidence            456889999997653321    1122232  23 58899998865  23333333   333322233599999993    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                        .   ...-.+..++...+.++..++  +|++|
T Consensus       325 --t---~~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        325 --T---TCVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             --C---CcchHHHHHHHHHCCCEEEEe--CCCCC
Confidence              1   113456666777788876664  35555

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.78  E-value=0.0063  Score=51.98  Aligned_cols=20  Identities=20%  Similarity=0.637  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHhHhhhcC
Q 023335          103 ISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi~~~~~  122 (283)
                      |+++|++|||||||++++.+
T Consensus        32 vsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999955443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.77  E-value=0.0071  Score=50.66  Aligned_cols=39  Identities=26%  Similarity=0.169  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHcCCcEEE--EcCCCCcCHHHHHHHHHHHHhC
Q 023335          227 ATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       227 ~~~~~~~~~~~~~~~~e--~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ...++.+|-+-.+-.|-  |||.+.+-+.|+++-+.+..-+
T Consensus       145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e  185 (240)
T COG1126         145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE  185 (240)
T ss_pred             HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence            34455555554555552  9999999999999887776644

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.76  E-value=0.032  Score=42.72  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      --+++.|++|+|||+|+ .+...
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999 76654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.73  E-value=0.0059  Score=49.02  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ||+|.|.+++|||||+ .+...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999 87654

>KOG2484 consensus GTPase [General function prediction only]

Probab=95.68  E-value=0.0086  Score=54.26  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=39.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  157 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~  157 (283)
                      ...+++-|+|-|||||||+| ++........-++.|++..-..+..+.   .+.+.|.+|.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence            45789999999999999999 998887763333344444334444432   3567899884

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=95.62  E-value=0.074  Score=42.89  Aligned_cols=93  Identities=8%  Similarity=-0.030  Sum_probs=55.1

Q ss_pred             eEEEEEEEeCCCCCCcccchhhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCC
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPD  221 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~  221 (283)
                      ..+.+.|.|+++...  ......+  ..+|.++++...+ ..+...+..+++.+++..  .+. -+|.|+.+-.......
T Consensus        66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~  140 (169)
T cd02037          66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGK  140 (169)
T ss_pred             CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCC
Confidence            356788999998632  2222222  5789999998655 466777777777777653  233 4889998831000011


Q ss_pred             cccc-hHHHHHHHHHHcCCcEE
Q 023335          222 LQWT-IATQARAYAKAMKATLF  242 (283)
Q Consensus       222 ~~~~-~~~~~~~~~~~~~~~~~  242 (283)
                      .... .....+++++.++.+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~  162 (169)
T cd02037         141 KIYIFGKGGGEKLAEELGVPLL  162 (169)
T ss_pred             cccccCCccHHHHHHHcCCCEE
Confidence            1111 13456777777776544

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=95.60  E-value=0.11  Score=44.78  Aligned_cols=70  Identities=24%  Similarity=0.317  Sum_probs=46.8

Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh-------hHHHHHHHHHHHHh-----HCCCCceEEEeecC
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-------TLNSIVGWYSEARK-----WNQTAIPILIGTKF  212 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~-------s~~~~~~~~~~i~~-----~~~~~~~ilvgnK~  212 (283)
                      .++.++.+|.+||..-+.-|-..+.+..++|+|...++.+       +-+.+++-+...+.     +....-+||..||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            3567999999999988888889999999999999876521       11222221221111     11233457889999


Q ss_pred             CC
Q 023335          213 DD  214 (283)
Q Consensus       213 DL  214 (283)
                      ||
T Consensus       280 Dl  281 (379)
T KOG0099|consen  280 DL  281 (379)
T ss_pred             HH
Confidence            96

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=95.60  E-value=0.018  Score=54.93  Aligned_cols=109  Identities=14%  Similarity=0.174  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc-cc---cccc-------------cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE-QE---RSLQ-------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  163 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~-~~---~~~~-------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  163 (283)
                      +|-+.-.--+||||+- +.+... ..   ....             ..|+...+......-.++.++++||||+-.|.-.
T Consensus        41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E  120 (721)
T KOG0465|consen   41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE  120 (721)
T ss_pred             ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence            4555566678999999 764321 11   1110             1133333333333334678999999999999888


Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      ....++--|+.++++|....-.-+...-|.+. +++  +.|-|...||.|
T Consensus       121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~ry--~vP~i~FiNKmD  167 (721)
T KOG0465|consen  121 VERALRVLDGAVLVLDAVAGVESQTETVWRQM-KRY--NVPRICFINKMD  167 (721)
T ss_pred             ehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hhc--CCCeEEEEehhh
Confidence            88889999999999997655333344456543 332  345578889998

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.53  E-value=0.011  Score=39.46  Aligned_cols=19  Identities=16%  Similarity=0.219  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -.+|.|+.|+|||||+ .+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            3889999999999999 764

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=95.50  E-value=0.27  Score=44.16  Aligned_cols=97  Identities=8%  Similarity=0.021  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCCCCcccchhhhc--------ccCcEEEEEEECCChhhHHH-HHH-HHHHHHhHCCCCceEEEeecCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLTSRCTLNS-IVG-WYSEARKWNQTAIPILIGTKFDDFV  216 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~--------~~ad~iilv~D~~~~~s~~~-~~~-~~~~i~~~~~~~~~ilvgnK~DL~~  216 (283)
                      ....++++.|.-.-......+.        -.-|++|-|+|..+-..... +.+ ..+++.     .--+||.||.||  
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dl--  157 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDL--  157 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccC--
Confidence            3345667777543222222221        24578999999876433221 222 222221     123899999997  


Q ss_pred             CCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHH
Q 023335          217 RLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIF  256 (283)
Q Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf  256 (283)
                       ..++    ..+..++..++++  ++++.+|.. +....+++
T Consensus       158 -v~~~----~l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll  193 (323)
T COG0523         158 -VDAE----ELEALEARLRKLNPRARIIETSYG-DVDLAELL  193 (323)
T ss_pred             -CCHH----HHHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence             2222    1344455555554  467777773 33344333

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.36  E-value=0.031  Score=51.71  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ..+|+|+|.+|+|||||+ .+...
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999 77653

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=95.30  E-value=0.03  Score=49.37  Aligned_cols=57  Identities=11%  Similarity=0.128  Sum_probs=34.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-------cccccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  157 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~  157 (283)
                      .++.+.|+|-||||||||+ .+......       ...|........ .+.+.... .+.+.||+|-
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC-ceEEecCCCc
Confidence            4789999999999999999 76443222       223322222211 13333222 2677899994

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.27  E-value=0.014  Score=48.22  Aligned_cols=22  Identities=9%  Similarity=0.140  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      =|+|+|++|||||||+ +++...
T Consensus         6 ~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          6 LFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            3889999999999999 887653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.24  E-value=0.015  Score=44.16  Aligned_cols=25  Identities=20%  Similarity=0.178  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE  125 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~  125 (283)
                      -.++++|++|+|||+++ .+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999 77655433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=95.23  E-value=0.26  Score=44.28  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .+|-|.-|+|||||+ +++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          7 TLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            457899999999999 98754

>PRK06217 hypothetical protein; Validated

Probab=95.23  E-value=0.014  Score=47.94  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .||+|+|.+|+|||||. ++..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~   23 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAE   23 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999 7754

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.14  E-value=0.013  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .|.|+|..|+|||||+ .+++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999 87654

>COG1161 Predicted GTPases [General function prediction only]

Probab=95.14  E-value=0.031  Score=50.22  Aligned_cols=92  Identities=16%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             CCC-CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHH
Q 023335          155 GGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY  233 (283)
Q Consensus       155 ~G~-~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~  233 (283)
                      +|+ .++.......+...|+++-|.|+-++.+-.     ...+.++....+.++|+||+||   .+   ..+..+-.+.+
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~-----~~~l~~~v~~k~~i~vlNK~DL---~~---~~~~~~W~~~~   86 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTR-----NPELERIVKEKPKLLVLNKADL---AP---KEVTKKWKKYF   86 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEecccccccc-----CccHHHHHccCCcEEEEehhhc---CC---HHHHHHHHHHH
Confidence            443 345556677889999999999999886533     2344444445566999999997   22   22233444444


Q ss_pred             HHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          234 AKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       234 ~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      .+..+...+.+|++.+.+...+..
T Consensus        87 ~~~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          87 KKEEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HhcCCCccEEEEeecccCccchHH
Confidence            455466678888888877666653

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.13  E-value=0.016  Score=44.76  Aligned_cols=21  Identities=19%  Similarity=0.444  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .++|+|..|+|||||+ .+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            5889999999999999 65543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.09  E-value=0.015  Score=49.85  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .++++|+|.+|+|||+|+ .++..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            589999999999999999 77654

This is thought to be an ATPase involved in viral DNA packaging [].

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.054  Score=49.17  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc--------------Cccc-ccc-------ccceeeeeEEEEEE-------------CCe
Q 023335          102 KISLLGDCQIGKTSFV-KYVG--------------NEQE-RSL-------QMAGLNLINKTLMV-------------QGA  145 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~--------------~~~~-~~~-------~t~~~~~~~~~~~~-------------~~~  145 (283)
                      =|+++|..|+||||.+ ++..              +.|. ...       .-.++.++......             ..+
T Consensus       103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke  182 (483)
T KOG0780|consen  103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE  182 (483)
T ss_pred             EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc
Confidence            4789999999999999 7742              1111 000       01133333221111             234


Q ss_pred             EEEEEEEeCCCCCCc-----ccchhh-hcccCcEEEEEEECCChhh
Q 023335          146 RIAFSIWDVGGDSRS-----FDHVPI-ACKDAVAILFMFDLTSRCT  185 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~-----~~~~~~-~~~~ad~iilv~D~~~~~s  185 (283)
                      .+.+.|.||+|.+.-     ..+... -.-+.|-+|+|.|.+-...
T Consensus       183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa  228 (483)
T KOG0780|consen  183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA  228 (483)
T ss_pred             CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence            678999999996542     111111 1235789999999876543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.04  E-value=0.016  Score=44.21  Aligned_cols=19  Identities=32%  Similarity=0.349  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |++.|++|+|||+++ .+..
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            689999999999999 6654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.00  E-value=0.014  Score=47.75  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      .=+++.|++|||||||+ ++....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            45789999999999999 887665

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=94.97  E-value=0.019  Score=39.19  Aligned_cols=19  Identities=26%  Similarity=0.459  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |++.|.+|+||||+. .+..
T Consensus         2 i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            678999999999999 6654

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=94.95  E-value=0.096  Score=48.47  Aligned_cols=53  Identities=15%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             EEEEEeCCCCCCcc-cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC
Q 023335          148 AFSIWDVGGDSRSF-DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ  201 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~-~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~  201 (283)
                      .+.+.|.+|....+ .+....+...|++|+-= .++--..+++..+-+.|..|+.
T Consensus       699 TikikdLSGGQKaRValaeLal~~PDvlILDE-PTNNLDIESIDALaEAIney~G  752 (807)
T KOG0066|consen  699 TIKIKDLSGGQKARVALAELALGGPDVLILDE-PTNNLDIESIDALAEAINEYNG  752 (807)
T ss_pred             eEeeeecCCcchHHHHHHHHhcCCCCEEEecC-CCCCcchhhHHHHHHHHHhccC
Confidence            46778888765533 45566777888776643 3333335555566666776654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=94.89  E-value=0.018  Score=48.81  Aligned_cols=20  Identities=20%  Similarity=0.576  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHhHhhhc
Q 023335          102 KISLLGDCQIGKTSFVKYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~  121 (283)
                      -|+|+|++|||||||+.+++
T Consensus        33 ~vaI~GpSGSGKSTLLniig   52 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLG   52 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999994443

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.82  E-value=0.019  Score=44.64  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|+++|++|+|||+|+ .+.
T Consensus         1 ~vlL~G~~G~GKt~l~~~la   20 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELA   20 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            3799999999999999 664

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=94.79  E-value=0.02  Score=43.41  Aligned_cols=20  Identities=25%  Similarity=0.297  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      |+|.|.+||||||++ .+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999 76554

...

>PRK14530 adenylate kinase; Provisional

Probab=94.73  E-value=0.02  Score=48.19  Aligned_cols=20  Identities=30%  Similarity=0.321  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .+|+|+|.+|+||||+. .+.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La   24 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLA   24 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999 664

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=94.69  E-value=0.023  Score=44.40  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      |+|+|++|+|||||+ .+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999 77653

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK03839 putative kinase; Provisional

Probab=94.67  E-value=0.022  Score=46.48  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +|+|+|.+|+||||+. ++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            6999999999999999 6644

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=94.66  E-value=0.022  Score=51.97  Aligned_cols=93  Identities=11%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             CCCCCCceeeE----EEEEcCCCCcHHHhHhhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhh
Q 023335           92 YDTDSDLVSLK----ISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA  167 (283)
Q Consensus        92 ~~~~~~~~~~K----I~vlG~~~vGKSSLi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~  167 (283)
                      ++..+-..++|    |.++|..|+|||||++++.+-+.   |..|      .+.++|+.+     |--..++|+.+....
T Consensus       337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG------~I~ldg~pV-----~~e~ledYR~LfSav  402 (546)
T COG4615         337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSG------EILLDGKPV-----SAEQLEDYRKLFSAV  402 (546)
T ss_pred             ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCC------ceeECCccC-----CCCCHHHHHHHHHHH
Confidence            33444444444    66999999999999955554433   2222      344556553     333456677776666


Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHh
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARK  198 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~  198 (283)
                      +.+.+.+==.+......+-+.+..|++.+.-
T Consensus       403 FsDyhLF~~ll~~e~~as~q~i~~~LqrLel  433 (546)
T COG4615         403 FSDYHLFDQLLGPEGKASPQLIEKWLQRLEL  433 (546)
T ss_pred             hhhHhhhHhhhCCccCCChHHHHHHHHHHHH
Confidence            6555444334444444677888899887753

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=94.59  E-value=0.024  Score=46.57  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|+|+|++|+|||||+ .+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~   24 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQ   24 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999 6644

>TIGR03263 guanyl_kin guanylate kinase

Probab=94.56  E-value=0.025  Score=45.96  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .|+|+|++|+|||||+ .+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999 77663

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=94.55  E-value=0.063  Score=41.73  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -|++.|+.|+|||||+ .+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999 66654

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF05729 NACHT: NACHT domain

Probab=94.54  E-value=0.024  Score=44.89  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ++|.|++|+|||+++ +++..
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            689999999999999 87654

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=94.49  E-value=0.025  Score=46.02  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -++|+|++|||||||+ .+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999 76543

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=94.48  E-value=0.073  Score=49.11  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc---C-ccc------ccc------------ccceeeeeEEEEEE-------------
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG---N-EQE------RSL------------QMAGLNLINKTLMV-------------  142 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~---~-~~~------~~~------------~t~~~~~~~~~~~~-------------  142 (283)
                      .+..|+++|..|+||||.+ ++..   + ...      +.|            ..++++++...-..             
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a  178 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA  178 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence            3578999999999999998 7632   1 000      111            01233433321000             


Q ss_pred             CCeEEEEEEEeCCCCCCccc-chhh-----hcccCcEEEEEEECCChh
Q 023335          143 QGARIAFSIWDVGGDSRSFD-HVPI-----ACKDAVAILFMFDLTSRC  184 (283)
Q Consensus       143 ~~~~~~l~i~Dt~G~~~~~~-~~~~-----~~~~ad~iilv~D~~~~~  184 (283)
                      ....+.+.|.||+|...... +...     -.-+.|=++||.|..-.+
T Consensus       179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ  226 (451)
T COG0541         179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ  226 (451)
T ss_pred             HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence            01235688999999765432 1111     124678899999987654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.46  E-value=0.029  Score=41.86  Aligned_cols=19  Identities=32%  Similarity=0.609  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .++++|++|+|||||+ .+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            5789999999999999 654

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14532 adenylate kinase; Provisional

Probab=94.45  E-value=0.027  Score=46.26  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +|+++|.||+||||+. ++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            6999999999999999 7753

>PRK08233 hypothetical protein; Provisional

Probab=94.40  E-value=0.032  Score=45.30  Aligned_cols=21  Identities=19%  Similarity=0.195  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +-|+|.|.+|+|||||. ++..
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            56778999999999999 7764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.38  E-value=0.028  Score=45.88  Aligned_cols=19  Identities=32%  Similarity=0.317  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|+|+|.+||||||++ .+.
T Consensus         5 ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999 776

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13949 shikimate kinase; Provisional

Probab=94.37  E-value=0.03  Score=45.46  Aligned_cols=19  Identities=32%  Similarity=0.405  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +|+|+|.+|+||||+. .+.
T Consensus         3 ~I~liG~~GsGKstl~~~La   22 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALA   22 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            7999999999999999 554

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=94.33  E-value=0.027  Score=43.06  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      -++|.|.+|+|||+++ ++....
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHh
Confidence            3789999999999999 887654

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.26  E-value=0.028  Score=45.53  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=15.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      --++|.|.+|+|||+|+ ++..
T Consensus        25 ~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   25 RNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             --EEE-B-TTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999 7754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.25  E-value=0.032  Score=48.33  Aligned_cols=19  Identities=26%  Similarity=0.499  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++++|+.|||||||+ .+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            679999999999999 6654

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=94.24  E-value=0.018  Score=52.27  Aligned_cols=58  Identities=17%  Similarity=0.227  Sum_probs=0.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      .+...+-|-+||-||+||||+| .+-+++....-|-.|.+   +...+-...-.+-++|+||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET---KVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET---KVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc---hHHHHHHHHhceeEecCCC

>PLN02165 adenylate isopentenyltransferase

Probab=94.22  E-value=0.069  Score=47.98  Aligned_cols=21  Identities=14%  Similarity=0.295  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      --|+|+|++|+|||+|. .+..
T Consensus        44 ~iivIiGPTGSGKStLA~~LA~   65 (334)
T PLN02165         44 KVVVIMGATGSGKSRLSVDLAT   65 (334)
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            36899999999999999 7654

>PRK02496 adk adenylate kinase; Provisional

Probab=94.15  E-value=0.039  Score=45.19  Aligned_cols=20  Identities=20%  Similarity=0.260  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .+|+|+|.+|+||||+. .+.
T Consensus         2 ~~i~i~G~pGsGKst~a~~la   22 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLA   22 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999 654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.13  E-value=0.035  Score=47.15  Aligned_cols=21  Identities=14%  Similarity=0.518  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      -|+++|++|+|||||+|.+++
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            388999999999999944444

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=94.11  E-value=0.035  Score=45.24  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .-+.|+|.+|+|||||+ +++..
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHH
Confidence            35789999999999999 88753

>PRK14531 adenylate kinase; Provisional

Probab=94.08  E-value=0.038  Score=45.30  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..+|+++|.||+||||+. ++..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999 6643

>PHA00729 NTP-binding motif containing protein

Probab=94.08  E-value=0.039  Score=46.84  Aligned_cols=22  Identities=23%  Similarity=0.444  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .+|+|.|.||+|||+|. ++...
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999 87653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.07  E-value=0.087  Score=45.28  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+.|+|+.|+|||||+ .+.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G   50 (246)
T PRK14269         30 ITALIGASGCGKSTFLRCFNR   50 (246)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            5889999999999999 5554

>PTZ00088 adenylate kinase 1; Provisional

Probab=94.05  E-value=0.036  Score=47.32  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+||+|+|.|||||||+. .+..
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999 6643

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=94.04  E-value=0.11  Score=48.69  Aligned_cols=74  Identities=16%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA  246 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  246 (283)
                      .+..+|+||.++|+.++--|.. ..+...+....+.+..+|+.||.||   +++.    ....-.++..+.++++++-||
T Consensus       171 VlErSDivvqIVDARnPllfr~-~dLe~Yvke~d~~K~~~LLvNKaDL---l~~~----qr~aWa~YF~~~ni~~vf~SA  242 (562)
T KOG1424|consen  171 VLERSDIVVQIVDARNPLLFRS-PDLEDYVKEVDPSKANVLLVNKADL---LPPE----QRVAWAEYFRQNNIPVVFFSA  242 (562)
T ss_pred             HHhhcceEEEEeecCCccccCC-hhHHHHHhccccccceEEEEehhhc---CCHH----HHHHHHHHHHhcCceEEEEec
Confidence            4679999999999998754432 2223333333445566899999998   4432    123334455566899999888


Q ss_pred             CC
Q 023335          247 TH  248 (283)
Q Consensus       247 ~~  248 (283)
                      ..
T Consensus       243 ~~  244 (562)
T KOG1424|consen  243 LA  244 (562)
T ss_pred             cc
Confidence            76

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.01  E-value=0.39  Score=46.04  Aligned_cols=90  Identities=11%  Similarity=-0.032  Sum_probs=42.8

Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcc-cchH--HHHHHHHHHcCCcEEEE
Q 023335          172 VAILFMFDLTSR---CTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQ-WTIA--TQARAYAKAMKATLFFS  244 (283)
Q Consensus       172 d~iilv~D~~~~---~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~-~~~~--~~~~~~~~~~~~~~~e~  244 (283)
                      .-+|||=|+-+.   ++ ..++..+.+..... .. |.|+|.+-+|....-..... ....  --..++....++..+..
T Consensus       133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~-~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F  210 (519)
T PF03215_consen  133 KKVILVEDLPNVFHRDT-SRFREALRQYLRSS-RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF  210 (519)
T ss_pred             ceEEEeeccccccchhH-HHHHHHHHHHHHcC-CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence            356666666442   22 33333333333222 33 66788886653111010000 0001  11234445556777777


Q ss_pred             cCCCCcCHHHHHHHHHHHH
Q 023335          245 SATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i  263 (283)
                      .+.+..-+.+.+..|+..-
T Consensus       211 NpIa~T~mkKaL~rI~~~E  229 (519)
T PF03215_consen  211 NPIAPTFMKKALKRILKKE  229 (519)
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            7776666777666666543

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=94.00  E-value=0.032  Score=45.81  Aligned_cols=20  Identities=30%  Similarity=0.368  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +|+|+|.+|+||||+. .+..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~   21 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAK   21 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 7654

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=94.00  E-value=0.41  Score=40.75  Aligned_cols=101  Identities=11%  Similarity=0.113  Sum_probs=61.7

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHH--HHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcc
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI--VGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQ  223 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~--~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~  223 (283)
                      +.+.|.|+.|...  ......+..+|.+|+=.-.+..+.-+.+  .+|+.++.+.....+| -|+.|+..-      ...
T Consensus        84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~------~~~  155 (231)
T PF07015_consen   84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA------ARL  155 (231)
T ss_pred             CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc------chh
Confidence            5678999988654  3355567789999988766644433322  3566666544333344 588999872      111


Q ss_pred             cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          224 WTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      ........++.+  +++.|.+.-....-..++|.
T Consensus       156 ~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  156 TRAQRIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             hHHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            122333344443  47888888877777777666

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>TIGR00235 udk uridine kinase

Probab=93.97  E-value=0.051  Score=45.48  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..-|.|+|.+|+|||||+ .+.+
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999 7654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK00300 gmk guanylate kinase; Provisional

Probab=93.92  E-value=0.039  Score=45.94  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      --|+|+|++|+|||||+ .+.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999 66553

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=93.92  E-value=0.039  Score=49.67  Aligned_cols=19  Identities=32%  Similarity=0.618  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++++|++|||||||+ .+.+
T Consensus        32 ~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            789999999999999 5543

>TIGR01351 adk adenylate kinases

Probab=93.90  E-value=0.037  Score=46.46  Aligned_cols=20  Identities=25%  Similarity=0.360  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ||+|+|.||+||||+. ++..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 7643

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.86  E-value=0.038  Score=46.39  Aligned_cols=19  Identities=21%  Similarity=0.566  Sum_probs=15.7

Q ss_pred             EEEEcCCCCcHHHhHhhhc
Q 023335          103 ISLLGDCQIGKTSFVKYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi~~~~  121 (283)
                      .+++|++|||||||+|.++
T Consensus        36 TAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            4699999999999994443

>PF13173 AAA_14: AAA domain

Probab=93.81  E-value=0.039  Score=42.43  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQ  124 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~  124 (283)
                      -+++.|+.+||||||+ ++.....
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            3689999999999999 8876543

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=93.78  E-value=0.044  Score=44.67  Aligned_cols=19  Identities=32%  Similarity=0.345  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |+|+|.|||||||+. ++..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            689999999999999 7654

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF13479 AAA_24: AAA domain

Probab=93.75  E-value=0.048  Score=45.94  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hh
Q 023335          100 SLKISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~  119 (283)
                      .+|++|.|++|+|||||+ .+
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC
Confidence            589999999999999999 77

>PLN03025 replication factor C subunit; Provisional

Probab=93.70  E-value=0.33  Score=43.49  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .+++.|++|+||||++ .+.+.
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHE   57 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999 76554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-13
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-12
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-12
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-12
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		7e-12
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		7e-12
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		9e-12
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-11
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-11
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-11
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-11
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		7e-11
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		8e-11
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-10
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-10
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-10
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-10
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-10
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-10
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		4e-10
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-10
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-10
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		5e-10
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		5e-10
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-10
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		6e-10
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		6e-10
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		7e-10
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-10
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		8e-10
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-09
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-09
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-09
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-09
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-09
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-09
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-09
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-09
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-09
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-09
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-09
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-09
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-09
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-09
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-09
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-09
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		8e-09
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-08
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-08
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-08
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-08
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-08
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-08
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-08
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-08
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-07
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-07
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-07
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-07
1byu_A	216	Canine Gdp-Ran Length = 216		2e-07
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-07
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-07
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-07
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-07
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-07
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-07
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-07
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-07
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-07
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-07
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		4e-07
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-07
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-07
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-07
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		6e-07
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-07
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		7e-07
1vg1_A	185	Gdp-bound Rab7 Length = 185		7e-07
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		9e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		9e-07
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		9e-07
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-06
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-06
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-06
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-06
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-06
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-06
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-06
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-06
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-06
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		4e-06
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-06
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-06
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-06
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		5e-06
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		6e-06
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		8e-06
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-05
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-05
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-05
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-05
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-05
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-05
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-05
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-05
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		5e-05
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		6e-05
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		6e-05
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		6e-05
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		6e-05
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		7e-05
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		7e-05
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		7e-05
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		8e-05
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		9e-05
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		9e-05
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-04
1mh1_A	186	Small G-Protein Length = 186		1e-04
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-04
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-04
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-04
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-04
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-04
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-04
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-04
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-04
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-04
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-04
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-04
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-04
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-04
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-04
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		6e-04
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-04

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +   G + + K L + G R+  +IWD  G 
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 122
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 123 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 122
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 123 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + ++G K D   
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 136
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L  +   +I  +A +YA+++ A  + +SA  N  + ++F
Sbjct: 137 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVG 155
           L  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+  Q     F IWD  
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
           G  R     P+  + + A + ++D+T   T +++  W  E R+    +I + I     D 
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
                D++  +   A+ YA ++ A    +SA + IN+N++F
Sbjct: 123 T----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 79  AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLI 136
           +GL  +S +  +G   DS    +KI L+GD  +GK+   V++V ++   S +   G++  
Sbjct: 2   SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 137 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 196
            KT+ + G ++   +WD  G  R         + A+ I+ ++D+T   T  +I  W+   
Sbjct: 59  IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
Query: 197 RKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255
            +  N  A  +L+G K D   R+        A Q  A AK +      SSA ++ NVN+I
Sbjct: 119 NEHANDEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKNDDNVNEI 172
Query: 256 FKFIMAKL 263
           F F +AKL
Sbjct: 173 F-FTLAKL 179

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           +KI L+GD  +GK+   V++V ++   S +   G++   KT+ + G ++   IWD  G  
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A+ I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   R
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           +        A Q  A AK +      SSA ++ NVN+IF F +AKL
Sbjct: 124 V------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 102 KISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           KI L+GD  +GK+   V++V ++   S +   G++   KT+ + G ++   IWD  G  R
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 218
                    + A  I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   R+
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                   A Q  A AK +      SSA ++ NVN+IF F +AKL
Sbjct: 125 ------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 96  SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWD 153
           S L  LK+ LLGD  +GK+S + ++V +  + ++    G + + KT+  Q     F IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213
             G  R     P+  + + A + ++D+T   T +++  W  E R+    +I + I     
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           D      D++  +   A+ YA ++ A    +SA + IN+N++F
Sbjct: 122 DLT----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 160

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           +KI L+GD  +GK+   V++V ++   S +   G++   KT+ + G ++   +WD  G  
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A+ I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   R
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           +        A Q  A AK +      SSA ++ NVN+IF F +AKL
Sbjct: 128 V------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 166

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 102 KISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           KI L+GD  +GK+   V++V ++   S +   G++   KT+ + G ++   +WD  G  R
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 218
                    + A  I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   R+
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                   A Q  A AK +      SSA ++ NVN+IF F +AKL
Sbjct: 125 ------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 18/173 (10%)
Query: 99  VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
           ++ K+ LLGD   GK+S V ++V ++    QE ++   G    ++TL V  A + F IWD
Sbjct: 11  INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 67
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 212
             G  R     P+  + A A + +FD+T++ +      W  E + + N   +  L G K 
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 263
           D       D +   A  A+ YA+  +  LFF  +SA    NV +IF  I  +L
Sbjct: 128 DLL-----DARKVTAEDAQTYAQ--ENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGAR 146
           S+G D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   
Sbjct: 2   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 61
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIP 205
           I   +WD  G  R    +P   +D+ A + ++D+T+  +      W  + R +     I 
Sbjct: 62  IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           +L+G K D    L    Q +I    R  AK +      +SA    NV ++F+ + A L  
Sbjct: 122 MLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176
Query: 266 LPWTVKRN 273
           +  T  R+
Sbjct: 177 MESTQDRS 184

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
             +P D       +ARA+A+    +   +SA  + NV + FK I+ +++ +
Sbjct: 126 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+ ++GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+ ++GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  T      W  E ++     I I L G K D 
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   + Q     +A+AYA         +SA   +NVN+IF  I  KL
Sbjct: 121 ASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+ ++GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIW 152
           +   K+ LLG+  +GK+S V ++V  +    QE ++Q A    + +T+ +    + F IW
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAA---FLTQTVCLDDTTVKFEIW 59
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTK 211
           D  G  R     P+  + A A + ++D+T+  T      W  E ++     I I L G K
Sbjct: 60  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 119
Query: 212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
            D   +   + Q     +A+AYA         +SA   +NVN+IF  I  KL
Sbjct: 120 ADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           S  Y  D DL+  KI L+GD  +GK++ + ++  NE    S    G+    +TL ++G R
Sbjct: 3   SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI 206
           I   IWD  G  R         + AV  L ++D++   +  +   W SE R+     + +
Sbjct: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV 121
Query: 207 -LIGTKFD-DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
            LIG K D   +R  P        +++ +A+  +     +SA ++ NV+K F+ ++  ++
Sbjct: 122 GLIGNKSDLAHLRAVP------TEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGAR 146
           S+G D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIP 205
           +   +WD  G  R    +P   +D+   + ++D+T+  +      W  + R +     I 
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 124
Query: 206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           +L+G K D    L    Q +I    R  AK +      +SA    NV ++F+ + A L  
Sbjct: 125 MLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179
Query: 266 LPWTVKRN 273
           +  T  R+
Sbjct: 180 MESTQDRS 187

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVKY--VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GKT  V+    G   ER     G++   KTL +QG R+   IWD  G  
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 213
           R         + A   +  +D+T R +  S+  W  + RK+     + +LIG K D
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 65  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 125 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 8/171 (4%)
Query: 96  SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
           S L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   I   +WD
Sbjct: 2   SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 212
             G  R    +P   +D+ A + ++D+T+  +      W  + R +     I +L+G K 
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           D    L    Q +I    R  AK +      +SA    NV ++F+ + A L
Sbjct: 122 D----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  T      W  E ++     I I L G K D 
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   + Q     +A+AYA         +SA   +NVN+IF  I  KL
Sbjct: 123 ASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++ +
Sbjct: 141 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Query: 96  SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
           S +  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+        F IWD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213
             G  R     P+  + + A + ++D+T + +  ++  W  E ++     I + I     
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
           D      D++      A+ YA+++ A +  +SA + IN+ ++F+ I
Sbjct: 139 DL----SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 123 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI ++G+  +GKTSF+ +Y  +    + +   G++   KT+     RI   IWD  G  
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 217
           R         + A+  + M+D+T+  + N++  W ++ + ++   A  +L+G K D    
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 121
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
              D +   + + R  A  +    F +SA  NINV + F+
Sbjct: 122 -MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 160

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGNEQERS---LQMAGLNLINKTLMVQGARIAFSIWDVG 155
           V+ K+ L+GD  +GKT  +    +    +   +   G++  NK L V G ++   +WD  
Sbjct: 9   VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 213
           G  R         +DA A+L ++D+T++ + ++I  W +E  ++ Q  + + L+G K D
Sbjct: 69  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+G+  +GKTSF+ +Y  +    + +   G++   KT+     RI   IWD  G  
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFD-DFV 216
           R         + A+  L M+D+ ++ +  ++  W ++ + ++   A  IL+G K D +  
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
           R+ P      A   R  A  +    F +SA  NINV ++F+
Sbjct: 143 RVVP------AEDGRRLADDLGFEFFEASAKENINVKQVFE 177

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ ++GD  +GK+S + ++  N    S +   G++   +T+ + G ++   IWD  G  
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R         +    ++ ++D+TS  +  ++  W  E  +       IL+G K DD    
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDD---- 125
Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
            P+ +      A  +A  M   LF +SA  N+NV ++F  I
Sbjct: 126 -PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V G   E      G   + +T+ +    + F IWD  
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P   + A A + ++D+T+  +      W  E ++     I I L G K D 
Sbjct: 65  GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +   D Q     +A++YA         +SA  + NVN+IF  I  KL
Sbjct: 125 ANKRAVDFQ-----EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 9/180 (5%)
Query: 87  TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQG 144
           T SSG D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++ 
Sbjct: 2   TMSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTA 203
             +   +WD  G  R    +P   +D+   + ++D+T+  + +    W  + R +     
Sbjct: 61  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 204 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           I +L+G K D       D +     +    AK +      +SA    NV ++F+ + A L
Sbjct: 121 IIMLVGNKTD-----LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 11/182 (6%)
Query: 96  SDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 153
           S +   K+ LLG+  +GK+S V ++V G   E      G   + +++ +    + F IWD
Sbjct: 4   SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKF 212
             G  R     P+  + A A + ++D+T++ T      W  E ++    +I I L G K 
Sbjct: 64  TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKA 123
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKR 272
           D   +   + +     +A+AYA         +SA   +NVN +F  I  K   LP +  +
Sbjct: 124 DLANKRMVEYE-----EAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK---LPKSEPQ 175
Query: 273 NL 274
           NL
Sbjct: 176 NL 177

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++ +
Sbjct: 129 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 132 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
             +P D       +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 126 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 24/189 (12%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 145
           D D D + +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA   
Sbjct: 5   DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 146 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 198
                ++   +WD  G  R         +DA+  L MFDLTS+ +  ++  W S  +A  
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 199 WNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK---- 254
           + +    +LIG K D      PD +     QAR  A+      F +SA    NV K    
Sbjct: 124 YCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 255 IFKFIMAKL 263
           +   IM ++
Sbjct: 179 LLDLIMKRM 187

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 11/188 (5%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
           L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDD 214
           G  R    +P   +D+   + ++D+T+  +      W  + R +     I +L+G K D 
Sbjct: 64  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD- 122
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNL 274
              L    Q +I    R  AK +      +SA    NV ++F+ + A L  +  T  R+ 
Sbjct: 123 ---LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSR 178
Query: 275 TIGEPIID 282
              E +ID
Sbjct: 179 ---EDMID 183

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 24/189 (12%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 145
           D D D + +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA   
Sbjct: 5   DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 146 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 198
                ++   +WD  G  R         +DA+  L MFDLTS+ +  ++  W S  +A  
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 199 WNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK---- 254
           + +    +LIG K D      PD +     QAR  A+      F +SA    NV K    
Sbjct: 124 YCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 255 IFKFIMAKL 263
           +   IM ++
Sbjct: 179 LLDLIMKRM 187

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  G  
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVR 217
           R    +P   +D+   + ++D+T+  +      W  + R +     I +L+G K D    
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD---- 117
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           L    Q +I    R  AK +      +SA    NV ++F+ + A L
Sbjct: 118 LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  G  
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVR 217
           R    +P   +D+   + ++D+T+  +      W  + R +     I +L+G K D    
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTD---- 118
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           L    Q TI  +    AK +      +SA    NV ++F+ + + L  
Sbjct: 119 LADKRQITIE-EGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 7/170 (4%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           + S+K+ LLG+  +GK+S V ++V N+  E      G   + + + +    + F IWD  
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
           G  R     P   ++A A L ++D+T   +      W  E  +     I I L+G K D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID- 119
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 263
              L    +  +A +        K  LFF +SA    NVN +F  I  K+
Sbjct: 120 --XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--------RIA 148
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QG         ++ 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARKWNQTAIPI 206
             +WD  G  R         +DA+  L MFDLTS+ +  ++  W S  +A  + +    +
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK----IFKFIMAK 262
           LIG K D      PD +     QAR  A       F +SA    NV K    +   IM +
Sbjct: 146 LIGNKAD-----LPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 263 L 263
           +
Sbjct: 201 M 201

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI ++G+  +GKTSF+ +Y  +    + +   G++   KT+     RI   IWD  G  
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 217
           R         + A   +  +D+T+  + N++  W ++ + ++   A  +L+G K D    
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 124
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
              D +   + + R  A  +    F +SA  NINV + F+
Sbjct: 125 -XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 20/179 (11%)
Query: 91  GYDTDSDLVSL-KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA 145
           G  TD D   L K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 146 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 195
                   ++   +WD  G  R         +DA   L  FDLTS+ +  ++  W S  +
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 196 ARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254
           A  + +    +LIG K D      PD +     QAR  A+      F +SA    NV K
Sbjct: 121 ANAYCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 20/179 (11%)
Query: 91  GYDTDSDLVSL-KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA 145
           G  TD D   L K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 146 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 195
                   ++   +WD  G  R         +DA   L  FDLTS+ +  ++  W S  +
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 196 ARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254
           A  + +    +LIG K D      PD +     QAR  A+      F +SA    NV K
Sbjct: 121 ANAYCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ ++G+  +GKTSF+ +Y  +    + +   G++   KT+     R+   IWD  G  
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFD-DFV 216
           R         + A+  + M+D+T+  + N++  W ++ + ++   A  IL+G K D +  
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
           R+ P        + +  A+ +    F +SA  NI+V + F+
Sbjct: 144 RVVP------TEKGQLLAEQLGFDFFEASAKENISVRQAFE 178

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIA 148
           G   D D +  KI L+G+  +GKT  V+          Q A  G++ + KT+ + G ++ 
Sbjct: 18  GSMEDYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 76
Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPIL 207
             IWD  G  R         + A A++  +D+T   +   +  W  E  ++ +   I +L
Sbjct: 77  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 208 IGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           +G K D   R     Q     +A  +++A       +SA  + NV K+F  +  +L
Sbjct: 137 VGNKIDLAERREVSQQ-----RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           L++ ++G   +GKTS ++   ++   E      G++   KT+ ++G +I   IWD  G  
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A  I+ ++D+T + T + +  W     K+ ++ A  +L+G K D    
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD---- 142
Query: 218 LPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF 256
              D + T   Q   +A+ +    F  +SA  N NV++IF
Sbjct: 143 CETDREIT-RQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 74  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 134 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+  LG+  +GKTS + ++  +  + + Q   G++ ++KTL +    +   +WD  G  R
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA-RKWNQTAIPILIGTKFDDFVRL 218
               +P   +D+ A + ++D+T+R +  +   W  +   +  +  I  L+G K D     
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD----- 117
Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             DL+     +    A+        +SA    N+  +FK   +KL
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARI-AFSIWDVGGD 157
            KI L+GD  +GK++ + ++  +E    S    G+    K++ ++  +I    IWD  G 
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPIL-IGTKFD-DF 215
            R         + AV  L ++D+T + +  +I  W  E R    + I IL +G K D   
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
           +R+  D        A  YAK  K     +SA    NV   F  ++ +++N+
Sbjct: 128 LRVIND------NDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNV 172

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 74  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 134 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD-DFV 216
           R         + AV  L +FDLT   T   +  W  E     + T + +L+G K D    
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
           R  P        +AR +A+        +SA  + NV   F+ ++ ++F
Sbjct: 146 REVP------TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 121
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 122 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V G  +   IWD  G  
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A   L ++D+TSR T NS+  W ++AR   +   + IL G K D    
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD---- 141
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           L P+ + T    +R +A+  +     +SA    NV + F
Sbjct: 142 LDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAF 179

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD-DFV 216
           R         + AV  L +FDLT   T   +  W  E     + T + +L+G K D    
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
           R  P        +AR +A+        +SA  + NV   F+ ++ ++F
Sbjct: 131 REVP------TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
           V LK+ +LGD  +GKTS +    N++  +   A  G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 210
             R F  + +A  + A   + +FD+T+  T  ++  W  E    A   +    P +++G 
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
           K D    L      T   QA  Y+K      F +SA   INV + F+ I          V
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 271 KRNLTIGEPI 280
           +      EPI
Sbjct: 181 ELYNEFPEPI 190

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           + KI L GD  +GK+SF+ +   NE +E      G++   KTL+V G R    +WD  G 
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 213
            R         + A  +L ++D+T   +  +I  W           +PI L+G K D
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A   L ++D+TSR T N++  W ++AR   +Q  + IL G K D    
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 126
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           L  D + T    +R +A+  +     +SA    NV + F     K+ N
Sbjct: 127 LDADREVTFLEASR-FAQENELMFLETSALTGENVEEAFVQCARKILN 173

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 9/175 (5%)
Query: 95  DSDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIW 152
           + ++ + K+ L+GD   GKT+FVK    G  +++ +   G+ +   +       I F +W
Sbjct: 7   NGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVW 66
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 212
           D  G  +          +A   + MFD+TSR T  ++  W+ +  +  +    +L G K 
Sbjct: 67  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 126
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           D   R        +  +   + +      +  SA  N N  K F ++  KL   P
Sbjct: 127 DVKER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 174

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
           V LK+ +LGD  +GKTS +    N++  +   A  G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 210
             R F  + +A  + A   + +FD+T+  T  ++  W  E    A   +    P +++G 
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
           K D   R       T   QA  Y+K      F +SA   INV + F+ I          V
Sbjct: 126 KIDFENRQVA----TKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 271 KRNLTIGEPI 280
           +      EPI
Sbjct: 181 ELYNEFPEPI 190

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDVGGD 157
           LK+ +LGD  +GKTS + +YV ++  +  +   G + + K + V G ++A   +WD  G 
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 158 SRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGTK 211
            R F  + +A  + A   + ++D+T+  +  +I  W  E    A   +    P +++G K
Sbjct: 69  ER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 212 FDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIFKFI 259
            D         +      A+  AK++    LF +SA + INV+  F+ I
Sbjct: 128 ID----AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 14/169 (8%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
           V LK+ +LGD  +GKTS +    N++  +   A  G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 210
             R F  + +A  + A   + +FD+T+  T  ++  W  E    A   +    P +++G 
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
           K D    L      T   QA  Y+K      F +SA   INV + F+ I
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTI 169

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 65  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 124
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 125 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 168

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+GD Q GKT+ ++ +  +   E  +     N     L  +  R+  S+WD  G S 
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG-SP 70
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD---- 213
            +D+V P+   D+ A+L  FD++   T++S +  W +E   +  +   +LIG K D    
Sbjct: 71  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
Query: 214 --DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 267
               + L    Q  I+  Q  A AK + A ++   S+ T   +++ IF+       N P
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 11  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 70
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 71  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 130
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 131 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 174

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
           V LK+ +LGD  +GKTS +    N++  +   A  G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 210
             R F  + +A  + A   + +FD+T+  T  ++  W  E    A   +    P +++G 
Sbjct: 67  LER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
           K D    L      T   QA  Y+K      F +SA   INV + F+ I          V
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 271 KRNLTIGEPI 280
           +      EPI
Sbjct: 181 ELYNEFPEPI 190

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+GD Q GKT+ ++ +  +   E  +     N     L  +  R+  S+WD  G S 
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG-SP 69
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD---- 213
            +D+V P+   D+ A+L  FD++   T++S +  W +E   +  +   +LIG K D    
Sbjct: 70  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
Query: 214 --DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 267
               + L    Q  I+  Q  A AK + A ++   S+ T   +++ IF+       N P
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 9/174 (5%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 153
            ++ + K+ L+GD   GKT+FVK    G  +++ +   G+ +   +       I F +WD
Sbjct: 1   GEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWD 60
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213
             G  +          +A   + MFD+TSR T  ++  W+ +  +  +    +L G K D
Sbjct: 61  TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD 120
Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
              R        +  +   + +      +  SA  N N  K F ++  KL   P
Sbjct: 121 VKER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 167

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+GD Q GKT+ ++ +  +   E  +     N     L  +  R+  S+WD  G S 
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN-YTACLETEEQRVELSLWDTSG-SP 86
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD---- 213
            +D+V P+   D+ A+L  FD++   T++S +  W +E   +  +   +LIG K D    
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
Query: 214 --DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 267
               + L    Q  I+  Q  A AK + A ++   S+ T   +++ IF+       N P
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++GD  +GK+  +     ++         G+    + + V G +I   IWD  G  
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A   L ++D+T R T N +  W ++AR   N   + ILIG K D  + 
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD--LE 133
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
              D+ +    +A+ +A+        +SA    NV   F     K++
Sbjct: 134 AQRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Query: 97  DLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 154
           ++ + K+ L+GD   GKT+FVK    G  +++ +   G+ +   +       I F +WD 
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214
            G  +          +A   + MFD+TSR T  ++  W+ +  +  +    +L G K D 
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
             R        +  +   + +      +  SA  N N  K F ++  KL   P
Sbjct: 121 KER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 166

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++GD  +GK+  +     ++         G+    + + V G +I   IWD  G  
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A   L ++D+T R T N +  W ++AR   N   + ILIG K D  + 
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD--LE 148
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
              D+ +    +A+ +A+        +SA    NV   F     K++
Sbjct: 149 AQRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 9/171 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK    G  +++ +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   +  FD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           R        +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
           L +LKI ++G+  +GK+S + ++  +  +  L    G++   KT+ V G +   +IWD  
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFD 213
           G  R     P   + A  ++ ++D+T R T   +  W +E   +      +  L+G K D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A   L ++D+TSR T N++  W ++AR   +Q  + IL G K D    
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 127
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           L  D + T    +R +A+  +     +SA    +V + F     K+ N
Sbjct: 128 LDADREVTFLEASR-FAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  KI ++GD Q GKT+ +     +   E  +     N    +  +   RI  S+WD  G
Sbjct: 22  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 80
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 213
            S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D
Sbjct: 81  -SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 138

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGN---EQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           ++ KI L+GD  +GKT+++  V +   E+  +  +  +N     L  QG  I F++WD  
Sbjct: 10  LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI 208
           G  +      +    A   +  FD+TSR T  ++  W  E +       PI++
Sbjct: 70  GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQ------- 143
           D D D + +K   LGD  +GKTS + +Y  G    + +   G++   K ++ +       
Sbjct: 5   DGDYDYL-IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 144 ---GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 200
              G RI   +WD  G  R         +DA+  L +FDLT+  +  ++  W S+ +   
Sbjct: 64  VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 201 QTAIP--ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 258
            +  P  +L G K D       D +     +AR  A+      F +SA +  N++   + 
Sbjct: 124 YSENPDIVLCGNKSD-----LEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178
Query: 259 IM 260
           ++
Sbjct: 179 LL 180

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  KI ++GD Q GKT+ +     +   E  +     N    +  +   RI  S+WD  G
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 85
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 213
            S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D
Sbjct: 86  -SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  KI ++GD Q GKT+ +     +   E  +     N    +  +   RI  S+WD  G
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 64
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 213
            S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D
Sbjct: 65  -SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 122

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFVK-YVGNEQERSLQMAGLNLINKTLMVQGARIA 148
           +G +    + S+K+ L+GD   GKTS +  +       S            L V+G  + 
Sbjct: 24  AGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
Query: 149 FSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPI 206
             IWD  G    +D + P+   DA  +L  FD+TS  + ++I   WY E   + +    I
Sbjct: 84  LHIWDTAGQD-DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII 142
Query: 207 LIGTKFD 213
           ++G K D
Sbjct: 143 VVGCKTD 149

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + A   L ++D+TSR T N++  W ++AR   +Q  + IL G K D    
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 124
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           L  D + T    +R +A+  +     +SA    +V + F     K+ N
Sbjct: 125 LDADREVTFLEASR-FAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           LK+ LLGD  +GK+S + +YV N+   ++    G+  +N+ L V G  +   IWD  G  
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 213
           R         + A   L  F +  R +  ++  W  E   +     P     +++G K D
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 10/160 (6%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++GD  +GK+  +    +++ + +     G+    + + + G +I   IWD  G  
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG-Q 69
Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
            SF  +  +  + A   L ++D+T R T N +  W  +AR+  N   + +LIG K D   
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           R     +     +  A+A+        +SA    NV + F
Sbjct: 130 RREVKKE-----EGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQG-ARIAFSIW 152
           S +  LKI +LGD   GKTS       E   ++  Q  GL+   + + + G   +   IW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA----IPILI 208
           D+GG +     +      A  +L ++D+T+  +  ++  WY+  +K ++ +    +  L+
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 209 GTKFD 213
           G K D
Sbjct: 122 GNKID 126

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+G+  +GK+  +    ++   +  +   G++   KT+ + G  +   IWD  G  
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + +  I+ ++D+T + + N +  W  E  ++   T + +L+G K D  ++
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 139
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
               +++ +   A+ +A A K     +SA  + NV   F
Sbjct: 140 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 175

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++GD  +GK+  +    +++ + +     G+    + + + G +I   IWD  G  
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
            SF  +  +  + A   L ++D+T R T N +  W  +AR+ + + + I LIG K D   
Sbjct: 82  -SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           R     +     +  A+A+        +SA    NV + F
Sbjct: 141 RRDVKRE-----EGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+G+  +GK+  +    ++   +  +   G++   KT+ + G  +   IWD  G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + +  I+ ++D+T + + N +  W  E  ++   T + +L+G K D  ++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 126
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
               +++ +   A+ +A A K     +SA  + NV   F
Sbjct: 127 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+G+  +GK+  +    ++   +  +   G++   KT+ + G  +   IWD  G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
           R         + +  I+ ++D+T + + N +  W  E  ++   T + +L+G K D  ++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 126
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
               +++ +   A+ +A A K     +SA  + NV   F
Sbjct: 127 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GKT  +     +   S  +   G++   +T+ + G RI   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 217
           R         + A+ I+ ++D+T+  + ++I  W     +     +  +++G K D    
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD---- 122
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
              D +     +    A         +SA  NINV   F F +A+
Sbjct: 123 -VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR 165

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
Query: 99  VSLKISLLGDCQIGKTSFVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V++K+ ++G+  +GK+S ++    G   +   +  G++ + + + V    +   +WD  G
Sbjct: 4   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 157 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
               FD +  A  + A A + +F  T R +  +I  W  +           L+  K D  
Sbjct: 64  -QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID-- 120
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
                D       +A   AK +K   + +S   ++NV+++FK++  K
Sbjct: 121 ---LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GKT  +     +   S  +   G++   +T+ + G RI   IWD  G  
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 217
           R         + A+ I+ ++D+T+  + ++I  W     +     +  +++G K D    
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD---- 124
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
              D +     +    A         +SA  NINV   F F +A+
Sbjct: 125 -VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR 167

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 71
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 128

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 80
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 137

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 65
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 122

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 213
           R         + +   L  F +    +  ++  W  E   +     P     +++G K D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 213
           R         + +   L  F +    +  ++  W  E   +     P     +++G K D
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 64
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 121

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 149
           G    S + ++K  ++GD  +GK    + Y  N           +  +  +MV G  +  
Sbjct: 1   GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 60
Query: 150 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPIL 207
            +WD  G    +D + P++       L  F L S  +  ++   WY E R        IL
Sbjct: 61  GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 119
Query: 208 IGTKFD 213
           +GTK D
Sbjct: 120 VGTKLD 125

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 213
           R         + +   L  F +    +  ++  W  E   +     P     +++G K D
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 88
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        +L+GTK D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 118

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        +L+GTK D
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           +K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G   
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
            +D + P++       L  F L S  + + +   WY E R        IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           +K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G   
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
            +D + P++       L  F L S  + + +   WY E R        IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           +K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G   
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
            +D + P++       L  F L S  + + +   WY E R        IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
             +D + P++       L  F L S  +  ++   WY E R        +L+GTK D
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 101 LKISLLGDCQIGKTS-FVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           +K   +GD  +GKT   + Y  N           +  +  ++V G  +   +WD  G   
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD 213
                P++ + A   +  F L S+ +  ++   W  E R +      IL+GTK D
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 6/173 (3%)
Query: 101 LKISLLGDCQIGKTS-FVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           +K   +GD  +GKT   + Y  N+          +  +  + V G  +   +WD  G   
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKF---DDF 215
                P++ + A   +  F L S+ +  +++  W  E R++      +L+GTK    DD 
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDK 129
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFS-SATHNINVNKIFKFIMAKLFNLP 267
             L        +TQ     K + A  +   S+    NV  +F   +  +   P
Sbjct: 130 GYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 205
            I F IWD  G  R    VP+  + A   + +FD+++  TL+    W ++  K +   I 
Sbjct: 92  NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL-KISSNYII 150
Query: 206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
           IL+  K D   +   D+      + + YA+        +SA    N+  IF  +  +++
Sbjct: 151 ILVANKIDKN-KFQVDI-----LEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-17
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-16
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	6e-16
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	9e-16
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-15
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-15
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-15
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-15
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-15
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-15
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-15
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-15
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-15
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-15
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	5e-15
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-15
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-15
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	5e-15
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-15
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-15
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	9e-15
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	9e-15
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-14
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-14
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-14
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-14
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-14
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-14
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-14
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-14
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-14
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-14
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	5e-14
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-14
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-14
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-14
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	7e-14
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	9e-14
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-13
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-13
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-13
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-13
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-13
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-13
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	3e-13
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-13
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-13
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-13
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-12
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-12
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-12
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-12
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	4e-12
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-12
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-12
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-12
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	8e-12
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-11
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-11
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	5e-10
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	8e-09
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-09
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-08
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-08
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-08
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-08
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-08
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-08
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	8e-08
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	9e-08
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-07
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-07
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-07
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-07
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-07
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-07
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	4e-07
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-07
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-07
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-06
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-06
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-06
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-06
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	8e-06
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 11/172 (6%)

Query: 99  VSLKISLLGDCQIGKTSFVK-YVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FVK ++  E +++ +   G+ +           I F++WD  G
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73

Query: 157 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
             + F  +       A   + MFD+TSR T  ++  W+ +  +  +    +L G K D  
Sbjct: 74  QEK-FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI- 131

Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
                D +  +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 132 ----KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 73.3 bits (180), Expect = 5e-16
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 7/170 (4%)

Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           + S+K+ LLG+  +GK+S V ++V N+  E      G   + + + +    + F IWD  
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 156 GDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 213
           G  R F  + P   ++A A L ++D+T   +      W  E  +  ++  I  L+G K D
Sbjct: 61  GQER-FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119

Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                    +     +    A+      F +SA    NVN +F  I  K+
Sbjct: 120 --XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 73.5 bits (181), Expect = 6e-16
 Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 8/180 (4%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           S+G D  + L   K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64

Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP 205
           +   +WD  G  R    +P   +D+   + ++D+T+  +      W  + R       I 
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 124

Query: 206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           +L+G K D       D +     +    AK +      +SA    NV ++F+ + A L  
Sbjct: 125 MLVGNKTDL-----ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 73.1 bits (180), Expect = 9e-16
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 7/182 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
            S     S     KI L GD  +GK+SF+ +   NE +E      G++   KTL+V G R
Sbjct: 18  GSAKSFSSQKA-YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER 76

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 205
               +WD  G  R F  +  +  + A  +L ++D+T   +  +I  W           +P
Sbjct: 77  TVLQLWDTAGQER-FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP 135

Query: 206 I-LIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           I L+G K D       + Q  +        A    A    +SA    N+ +    +  ++
Sbjct: 136 IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

Query: 264 FN 265
             
Sbjct: 196 KK 197

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 72.1 bits (178), Expect = 1e-15
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 14/178 (7%)

Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIA 148
           G +     V++K+ ++G+  +GK+S + +Y      +   +  G++ + + + V    + 
Sbjct: 1   GSE-----VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVR 55

Query: 149 FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPIL 207
             +WD  G    FD +  A  + A A + +F  T R +  +I  W  +           L
Sbjct: 56  LMLWDTAGQEE-FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTAL 114

Query: 208 IGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           +  K D       D       +A   AK +K   + +S   ++NV+++FK++  K   
Sbjct: 115 VQNKIDL-----LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 12/183 (6%)

Query: 91  GYDTDSDL-VSLKISLLGDCQIGKTSFVK-YVGNE-QERSLQMAGL-NLINKTLMVQGAR 146
           G  +     ++ KI L+GD  +GKT+++   +    ++      G  N     L  QG  
Sbjct: 1   GPGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV 60

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 205
           I F++WD  G  +    +       A   +  FD+TSR T  ++  W  E +       P
Sbjct: 61  IKFNVWDTAGQEK-KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP 119

Query: 206 I-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
           I +   K D       + Q           K      F  SA    N    F  +     
Sbjct: 120 IVVCANKIDI-----KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174

Query: 265 NLP 267
             P
Sbjct: 175 GRP 177

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 13/184 (7%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           SSG D D     LKI ++G+  +GK+S + ++  +          G++   KT+ V G +
Sbjct: 5   SSGMDEDVLTT-LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK--WNQTA 203
              +IWD  G  R F  +  +  + A  ++ ++D+T R T   +  W +E          
Sbjct: 64  AKLAIWDTAGQER-FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI 122

Query: 204 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           + +L+G K D   R           +   +A+        +SA     V   F+ ++ K+
Sbjct: 123 VNMLVGNKIDKENREVD------RNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176

Query: 264 FNLP 267
              P
Sbjct: 177 IQTP 180

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 12/182 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
             G    +D   L++ ++G   +GKTS + ++  +   E      G++   KT+ ++G +
Sbjct: 16  PRGSPRPADFK-LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 74

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 204
           I   IWD  G  R F+ +  A  + A  I+ ++D+T + T + +  W     K+ ++ A 
Sbjct: 75  IRLQIWDTAGQER-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE 133

Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 263
            +L+G K D         +     Q   +A+ +    F  +SA  N NV++IF  ++  +
Sbjct: 134 LLLVGNKLDC-----ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

Query: 264 FN 265
             
Sbjct: 189 LK 190

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 15/185 (8%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMV 142
              +  G      +   K+ L+GD Q GKT+       +   E  +     N     L  
Sbjct: 12  ENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN-YTACLET 70

Query: 143 QGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWN 200
           +  R+  S+WD  G    +D+V P+   D+ A+L  FD++   T++S +  W +E   + 
Sbjct: 71  EEQRVELSLWDTSGSPY-YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC 129

Query: 201 QTAIPILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKAMKATLFF--SSATHNIN 251
            +   +LIG K D        + L    Q  I+  Q  A AK + A ++   S+ T   +
Sbjct: 130 PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 189

Query: 252 VNKIF 256
           ++ IF
Sbjct: 190 IHSIF 194

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 12/163 (7%)

Query: 100 SLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           +LKI ++GD  +GKT   + +   E     +     N  +  +  +       +WD  G 
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQ 81

Query: 158 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDF 215
              +D + P++  D+  +L  F + +R + ++I   W  E + +  TA  +L+G K D  
Sbjct: 82  EE-YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD-- 138

Query: 216 VRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 256
             L  D    +   +     + +    +  +S+   I +N++F
Sbjct: 139 --LRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 70.6 bits (174), Expect = 3e-15
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ LLG+  +GKTS V +Y  N+  ++ +   G + + K L + G R+  +IWD  G  R
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 218
                PI  +D+   + ++D+T   +   +  W  E RK         ++G K D     
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL---- 123

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
               +     +A +YA+++ A  + +SA  N  + ++F  +  ++ 
Sbjct: 124 -EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ ++GD  +GK+S + ++  N      +   G++   +T+ + G ++   IWD  G  
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 217
           R F  +     +    ++ ++D+TS  +  ++  W  E  +       IL+G K DD   
Sbjct: 70  R-FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDD--- 125

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
             P+ +      A  +A  M   LF +SA  N+NV ++F  I   +  
Sbjct: 126 --PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 40/185 (21%), Positives = 87/185 (47%), Gaps = 11/185 (5%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMV 142
           S   +  +  + D +  K+ ++G+  +GKTSF+ +Y  +      +   G++   KT+  
Sbjct: 9   SGRENLYFQGNFDYM-FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR 67

Query: 143 QGARIAFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-N 200
              R+   IWD  G  R +  +  A  + A+  + M+D+T+  + N++  W ++ + +  
Sbjct: 68  HEKRVKLQIWDTAGQER-YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW 126

Query: 201 QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 260
             A  IL+G K D       + +     + +  A+ +    F +SA  NI+V + F+ ++
Sbjct: 127 DNAQVILVGNKCDM-----EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181

Query: 261 AKLFN 265
             + +
Sbjct: 182 DAICD 186

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 70.6 bits (174), Expect = 4e-15
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 96  SDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
           + +   K+ LLG+  +GK+S V ++V  +  E      G   + +T+ +    + F IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKF 212
             G  R     P+  + A A + ++D+T+  +      W  E ++  +   +  L G K 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           D       + +     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 122 DL-----ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 70.7 bits (174), Expect = 5e-15
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 159 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R +  +  A  + AV  L ++D+    T  ++  W  E R   +   + +L+G K D   
Sbjct: 90  R-YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-- 146

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
                L+     +ARA+A+    +   +SA  + NV   F+ I+ +++
Sbjct: 147 ---RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 70.7 bits (174), Expect = 5e-15
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 8/182 (4%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMV 142
               S      S +  LK+ LLGD  +GK+S V ++V +          G + + KT+  
Sbjct: 8   HHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC 67

Query: 143 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQ 201
                 F IWD  G  R     P+  + + A + ++D+T + +  ++  W  E ++   +
Sbjct: 68  GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE 127

Query: 202 TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMA 261
             +  + G K D       D++      A+ YA+++ A +  +SA + IN+ ++F+ I  
Sbjct: 128 NIVMAIAGNKCDL-----SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISR 182

Query: 262 KL 263
           ++
Sbjct: 183 QI 184

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 70.8 bits (174), Expect = 5e-15
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  R
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 160 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
            +  +  A  + AV  L ++D+    T  ++  W  E R   +   + +L+G K D    
Sbjct: 67  -YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL--- 122

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
               L+     +ARA+A+    +   +SA  + NV + FK I+ +++ 
Sbjct: 123 --RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 70.3 bits (173), Expect = 5e-15
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 11/169 (6%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           +KI L+GD  +GK+  + ++V ++     +   G++   KT+ + G ++   IWD  G  
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R F  +  A  + A+ I+ ++D+T   T  +I  W+    +  N  A  +L+G K D   
Sbjct: 64  R-FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           R+        A Q  A AK +      SSA ++ NVN+IF  +   +  
Sbjct: 123 RVVT------ADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 70.3 bits (173), Expect = 7e-15
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           S      SD +  K+ L+G+  +GKTSF+ +Y  +      +   G++   KT+     R
Sbjct: 12  SGLVPRGSDYM-FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 204
           I   IWD  G  R +  +  A  + A+  L M+D+ ++ +  ++  W ++ + +    A 
Sbjct: 71  IKLQIWDTAGQER-YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ 129

Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
            IL+G K D       D +   A   R  A  +    F +SA  NINV ++F+ ++  + 
Sbjct: 130 VILVGNKCDL-----EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184

Query: 265 N 265
            
Sbjct: 185 E 185

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 70.7 bits (174), Expect = 7e-15
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           S   D   D +  K+ L+GD  +GKT  V ++      ER     G++   KTL +QG R
Sbjct: 19  SGDPDEQYDFL-FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 204
           +   IWD  G  R F  +  +  + A   +  +D+T R +  S+  W  + RK+     +
Sbjct: 78  VKLQIWDTAGQER-FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV 136

Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 263
            +LIG K D       +L+     +A++ A+         +SA  + NV + F  +  +L
Sbjct: 137 QLLIGNKSDL-----SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

Query: 264 FN 265
             
Sbjct: 192 IM 193

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 69.9 bits (172), Expect = 9e-15
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 22/188 (11%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVK-YVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           SS          LK+ +LGD  +GKTS +  YV ++  ++     G + + K + V G +
Sbjct: 2   SSRKKNI-----LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK 56

Query: 147 IA-FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 204
           +A   +WD  G  R F  + +A  + A   + ++D+T+  +  +I  W  E         
Sbjct: 57  VATMQVWDTAGQER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115

Query: 205 P-----ILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIFK 257
           P     +++G K D       + +  ++   A+  AK++     F +SA + INV+  F+
Sbjct: 116 PETFPFVILGNKIDA-----EESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170

Query: 258 FIMAKLFN 265
            I      
Sbjct: 171 EIARSALQ 178

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 70.4 bits (173), Expect = 9e-15
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
             G   D D +  KI L+G+  +GKT  V ++             G++ + KT+ + G +
Sbjct: 16  PRGSMEDYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 204
           +   IWD  G  R F  +  +  + A A++  +D+T   +   +  W  E  ++ +   I
Sbjct: 75  VKLQIWDTAGQER-FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI 133

Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
            +L+G K D       + +     +A  +++A       +SA  + NV K+F  +  +L 
Sbjct: 134 TVLVGNKIDL-----AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

Query: 265 N 265
           +
Sbjct: 189 S 189

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 12/181 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           SSG     D + +KI L+GD  +GK+  + ++V ++     +   G++   KT+ + G +
Sbjct: 10  SSGNGKSYDSI-MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 204
           +   +WD  G  R F  +  A  + A+ I+ ++D+T   T  +I  W+    +  N  A 
Sbjct: 69  VKLQLWDTAGQER-FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ 127

Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
            +L+G K D   R+        A Q  A AK +      SSA ++ NVN+IF  +   + 
Sbjct: 128 LLLVGNKSDMETRVVT------ADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181

Query: 265 N 265
            
Sbjct: 182 E 182

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 41/207 (19%), Positives = 87/207 (42%), Gaps = 18/207 (8%)

Query: 63  TRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVG 121
           +      SS      +        + +  YD        K+ L+GD  +GK+  + ++  
Sbjct: 4   SHHHHHHSSGENLYFQGRP---MSSMNPEYDY-----LFKLLLIGDSGVGKSCLLLRFAD 55

Query: 122 NE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFD 179
           +   E  +   G++   +T+ + G  I   IWD  G  R F  +  +  + A  I+ ++D
Sbjct: 56  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIIVVYD 114

Query: 180 LTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK 238
           +T + + N++  W  E  ++ ++    +L+G K D         +    T A+ +A ++ 
Sbjct: 115 VTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-----TTKKVVDYTTAKEFADSLG 169

Query: 239 ATLFFSSATHNINVNKIFKFIMAKLFN 265
                +SA +  NV + F  + A++  
Sbjct: 170 IPFLETSAKNATNVEQSFMTMAAEIKK 196

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           S+    +   +  K  ++GD  +GK+  + ++   +         G+    + + V G +
Sbjct: 5   SATAPYNYSYI-FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 204
           I   IWD  G  R F  V  +  + A   L ++D+T R T N +  W ++AR   N   +
Sbjct: 64  IKLQIWDTAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 122

Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
            ILIG K D         +     +A+ +A+        +SA    NV   F     K++
Sbjct: 123 IILIGNKADL-----EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 10/168 (5%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  R
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86

Query: 160 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
            +  +  A  + AV  L +FDLT   T   +  W  E       T + +L+G K D    
Sbjct: 87  -YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL--- 142

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
                +     +AR +A+        +SA  + NV   F+ ++ ++F 
Sbjct: 143 --SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 8/180 (4%)

Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARI 147
           S  D  + L   K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   +
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPI 206
              +WD  G  R    +P   +D+   + ++D+T+  + +    W  + R       I +
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM 123

Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
           L+G K D       D +     +    AK +      +SA    NV ++F+ + A L  +
Sbjct: 124 LVGNKTDL-----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GKT  + ++  +      +   G++   +T+ + G RI   IWD  G  
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R F  +  A  + A+ I+ ++D+T+  + ++I  W     +  +     +++G K D   
Sbjct: 69  R-FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV-- 125

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
               D +     +    A         +SA  NINV   F  +   +  
Sbjct: 126 ---NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 68.4 bits (168), Expect = 3e-14
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI ++GD  +GKT    ++      +R+    G++   + + + G RI   +WD  G  
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 159 RSFDHVPIAC---KDAVAILFMFDLTSRCTLNSIVGWYSEARK--WNQTAIPILIGTKFD 213
           R F    +     ++  A++F++D+T+  + +S+  W  E ++         IL+G K D
Sbjct: 81  R-F-RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138

Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSA---THNINVNKIFKFIMAKLFN 265
                           A+ +A      LF +SA     N +V  IF  +  KL +
Sbjct: 139 L-----RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+GD  +GK+  + ++  +   E  +   G++   +T+ + G  I   IWD  G  R
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 160 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
            F  +  +  + A  I+ ++D+T + + N++  W  E  ++ ++    +L+G K D    
Sbjct: 78  -FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL--- 133

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
                +    T A+ +A ++      +SA +  NV + F  + A++  
Sbjct: 134 --TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI ++G+  +GKTSF+ +Y  +      +   G++   KT+     RI   IWD  G  
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R +  +  A  + A+  + M+D+T+  + N++  W ++ + +    A  +L+G K D   
Sbjct: 69  R-YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-- 125

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
               D +   + + R  A  +    F +SA  NINV + F+ ++  +  
Sbjct: 126 ---EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           S  Y  D DL+  KI L+GD  +GK++ + ++  NE    S    G+    +TL ++G R
Sbjct: 3   SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61

Query: 147 IAFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAI 204
           I   IWD  G  R +  +  A  + AV  L ++D++   +  +   W SE R+  +    
Sbjct: 62  IKAQIWDTAGQER-YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA 120

Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
             LIG K D        L+     +++ +A+  +     +SA ++ NV+K F+ ++  ++
Sbjct: 121 VGLIGNKSDL-----AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175

Query: 265 N 265
            
Sbjct: 176 Q 176

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 67.6 bits (166), Expect = 5e-14
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ LLGD   GK+S V ++V ++  E      G    ++TL V  A + F IWD  G  R
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 218
                P+  + A A + +FD+T++ +      W  E +   N   +  L G K D     
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL---- 129

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
             D +   A  A+ YA+        +SA    NV +IF  I  +L  +
Sbjct: 130 -LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 67.9 bits (166), Expect = 5e-14
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 12/168 (7%)

Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT   + Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD--- 213
             +D + P++       L  F L S  +  ++   WY E R        IL+GTK D   
Sbjct: 65  D-YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 214 ---DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 256
                 +L       I   Q  A AK + A  +   SA     +  +F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 67.5 bits (166), Expect = 5e-14
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 96  SDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
           S L  LK+ LLGD  +GK+S + ++V +          G + + KT+  Q     F IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKF 212
             G  R     P+  + + A + ++D+T   T +++  W  E R+    + +  + G K 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           D       D++  +   A+ YA ++ A    +SA + IN+N++F  I  ++
Sbjct: 122 DL-----TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+G+  +GK+  + ++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R F  +  +  + +  I+ ++D+T + + N +  W  E  ++   T + +L+G K D   
Sbjct: 69  R-FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-- 125

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
               D +      A+ +A A K     +SA  + NV   F  +  ++  
Sbjct: 126 ---KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMV 142
           S          SD +  K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V
Sbjct: 11  SSGLVPRGSIWSDFL-FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV 69

Query: 143 QGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-N 200
            G  +   IWD  G  R F  V  +  + A   L ++D+TSR T NS+  W ++AR   +
Sbjct: 70  GGKTVKLQIWDTAGQER-FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS 128

Query: 201 QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 260
              + IL G K D    L P+ + T   +A  +A+  +     +SA    NV + F    
Sbjct: 129 PNIVVILCGNKKD----LDPEREVTFL-EASRFAQENELMFLETSALTGENVEEAFLKCA 183

Query: 261 AKLFN 265
             + N
Sbjct: 184 RTILN 188

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 67.2 bits (165), Expect = 9e-14
 Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 11/184 (5%)

Query: 86  RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQ 143
              SSG       +  K  ++GD  +GK+  + ++     Q       G+    + + + 
Sbjct: 8   HHHSSGLVPRGSYL-FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID 66

Query: 144 GARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQ 201
           G +I   IWD  G    F  +  +  + A   L ++D+T R T N +  W  +AR+  + 
Sbjct: 67  GKQIKLQIWDTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS 125

Query: 202 TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMA 261
             + +LIG K D         +     +  A+A+        +SA    NV + F     
Sbjct: 126 NMVIMLIGNKSDL-----ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180

Query: 262 KLFN 265
           +++ 
Sbjct: 181 EIYR 184

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 70.0 bits (171), Expect = 1e-13
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 18/182 (9%)

Query: 101 LKISLLGDCQIGKTSFVK-YVGNE-QERSLQMAGLNLINKTLM--------VQGARIAFS 150
           +K+ L+GD   GKTS +K  +G     +  Q  GLN++ K            +     F 
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGT 210
            WD GG              +   + + D  +    +    W     K+   +  I++  
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHY---WLRHIEKYGGKSPVIVVMN 158

Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
           K D+      + +     +      A++      S  +   V  I K + + + +     
Sbjct: 159 KIDENPSYNIEQK-----KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIY 213

Query: 271 KR 272
             
Sbjct: 214 GT 215

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 66.8 bits (164), Expect = 1e-13
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 23/186 (12%)

Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARI 147
           +G          K+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +
Sbjct: 2   AGKS-----SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV 56

Query: 148 AFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP- 205
              IWD  G  R F  +     + +   L  F +    +  ++  W  E   +     P 
Sbjct: 57  TMQIWDTAGQER-FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115

Query: 206 ----ILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIFKFI 259
               +++G K D   R        ++T +A+A+ +      +F +SA    NV   F+  
Sbjct: 116 SFPFVILGNKIDISER-------QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

Query: 260 MAKLFN 265
           + ++  
Sbjct: 169 VRRVLA 174

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           K+ L+GD  +GKT  + ++          +   G++  NK L V G ++   +WD  G  
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R F  V  A  +DA A+L ++D+T++ + ++I  W +E  ++       +L+G K D   
Sbjct: 72  R-FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS-- 128

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
                 +          AK        +SA   +NV+  F  I  +L  
Sbjct: 129 ---AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 30/181 (16%)

Query: 89  SSGYDTDSDLVS-LKISLLGDCQIGKTS----FV--KYVGNEQ--ERSLQMAGLNLINKT 139
           SSG +        LK+ ++G+   GK++    ++   YV  E                K 
Sbjct: 8   SSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF--------KKE 59

Query: 140 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE-ARK 198
           ++V G      I D GG                A++F+F L    +  ++  ++      
Sbjct: 60  IVVDGQSYLLLIRDEGGPPE-LQF----AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF 114

Query: 199 WNQTAIP-ILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKI 255
            N + +P +L+GT+      +       I   +AR  +  +K   ++ + AT+ +NV ++
Sbjct: 115 RNASEVPMVLVGTQDA----ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170

Query: 256 F 256
           F
Sbjct: 171 F 171

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVK-YVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           +S          LK+ +LGD  +GKTS +  YV  +   +     G + + K +MV    
Sbjct: 2   TSRKKVL-----LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

Query: 147 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 205
           +   IWD  G  R F  + +A  + A   + +FD+T+  T  ++  W  E         P
Sbjct: 57  VTMQIWDTAGQER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP 115

Query: 206 -----ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFI 259
                +++G K D   R           +A+A+  +     +F +SA   INV + F+ I
Sbjct: 116 ENFPFVVLGNKIDLENRQVAT------KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

Query: 260 MAKLFNLPWTVKRNLTIGEPI 280
                     V+      EPI
Sbjct: 170 ARNALKQETEVELYNEFPEPI 190

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 101 LKISLLGDCQIGKTSFVK-YVGNE-QERSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGD 157
           LKI +LGD   GKTS    +      ++  Q  GL+   + + + G   +   IWD+GG 
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 158 SRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP----ILIGTKF 212
           +     +       A  +L ++D+T+  +  ++  WY+  +K ++ +       L+G K 
Sbjct: 67  TI-GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           D        ++     +   + +    +  F SA    +V   F+ + A++  + 
Sbjct: 126 DL-----EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 15/201 (7%)

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQE 125
               S   D    G   L     +G +    + S+K+ L+GD   GKTS  + +      
Sbjct: 4   HHHHSSGVDL---GTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFP 60

Query: 126 RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRC 184
            S            L V+G  +   IWD  G    +D + P+   DA  +L  FD+TS  
Sbjct: 61  ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD-YDRLRPLFYPDASVLLLCFDVTSPN 119

Query: 185 TLNSIVG-WYSEARKWNQTAIPILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKA 236
           + ++I   WY E   + +    I++G K D         +L  +    +   + +  A++
Sbjct: 120 SFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS 179

Query: 237 MKATLFF-SSATHNINVNKIF 256
           + A  +   SA  + NV+ +F
Sbjct: 180 VGAVAYLECSARLHDNVHAVF 200

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 101 LKISLLGDCQIGKTSFVK-YVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++G+   GK+  +  ++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
           R F  V  +  + A   L ++D+TSR T N++  W ++AR   +Q  + IL G K D   
Sbjct: 71  R-FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL-- 127

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
                 +     +A  +A+  +     +SA    NV + F     K+ N
Sbjct: 128 ---DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 28/205 (13%), Positives = 66/205 (32%), Gaps = 30/205 (14%)

Query: 80  GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTS----FVKYVGNEQERSLQMAGLNL 135
           G   + +      D  + L   K++++G+  +GK++    F        +     +G+ +
Sbjct: 1   GAASMVKKEVKPIDITATLR-CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEV 59

Query: 136 INKTLMVQGARIAFSIWDVGGDS------RSFDHVPIAC---KDAVAILFMFDLTSRCTL 186
           +   + +    ++  ++    D+      +                  + +FD++S  + 
Sbjct: 60  VVAPVTIPDTTVSVELFL--LDTAGSDLYKE-----QISQYWNGVYYAILVFDVSSMESF 112

Query: 187 NSIVGWYSEARKWNQTAIP----ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 242
            S   W+   +            +L+  K D    LPP         A+ +A       F
Sbjct: 113 ESCKAWFELLKSARPDRERPLRAVLVANKTD----LPPQRHQVRLDMAQDWATTNTLDFF 168

Query: 243 FSSA-THNINVNKIFKFIMAKLFNL 266
             SA     + +  F  I    +  
Sbjct: 169 DVSANPPGKDADAPFLSIATTFYRN 193

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 28/185 (15%), Positives = 73/185 (39%), Gaps = 27/185 (14%)

Query: 101 LKISLLGDCQIGKTSFVK-YVGNE-QERSLQMA--GLNLINKTLMVQGAR---IAFSIWD 153
           +K+ ++G+   GKT+ ++  +  +  +  +Q A  G+++ +  + ++  R   +  ++WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 154 VGGDSR------SFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTAIPI 206
             G          F             L ++DL+     ++++  W    +    ++  I
Sbjct: 63  FAGREEFYSTHPHF------MTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI 116

Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAM-----KATLFFSSATHNINVNKIFKFIMA 261
           L+GT  D  V      +  ++   +           +   F ++   +  + K+ K I+ 
Sbjct: 117 LVGTHLD--VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIIN 174

Query: 262 KLFNL 266
           +  N 
Sbjct: 175 ESLNF 179

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 14/170 (8%)

Query: 99  VSLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           +  K+ ++GD   GKT   + +  +E  E  +     N +   + V G ++  ++WD  G
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 82

Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 213
               +D + P++  D   IL  F + S  +L +I   W  E + +      IL+  K D 
Sbjct: 83  QED-YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141

Query: 214 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 256
                    L    Q  + T   RA A  ++A  +   SA     V ++F
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTS-FVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
             G    ++   +K  L+GD  +GKTS  V Y  N      +  A  N  +  + V G  
Sbjct: 9   GRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRP 67

Query: 147 IAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAI 204
           +   + D  G    FD + P+   +    L  F + S  +  N    W  E R     A 
Sbjct: 68  VRLQLCDTAGQD-EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP 126

Query: 205 PILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 256
            IL+GT+ D        + L    +  +    A+  A+ +KA  +   SA    N+ ++F
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 14/180 (7%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
           S   +      ++K  ++GD  +GKT   + Y  N      +     N     +MV G  
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKP 77

Query: 147 IAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAI 204
           +   +WD  G    +D + P++       L  F L S  +  ++   WY E R       
Sbjct: 78  VNLGLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP 136

Query: 205 PILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 256
            IL+GTK D         +L       I   Q  A AK + A  +   SA     +  +F
Sbjct: 137 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 15/171 (8%)

Query: 99  VSLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  KI ++GD Q GKT+    +  +   E  +     N    +  +   RI  S+WD  G
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSG 85

Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 213
               +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D 
Sbjct: 86  SPY-YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144

Query: 214 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFF--SSATHNINVNKIF 256
                  V L    Q  ++  Q    AK + A  +   S+     +V  IF
Sbjct: 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 14/170 (8%)

Query: 99  VSLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           +  K+ ++GD   GKT   + +  ++  E  +     N I   + V G ++  ++WD  G
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAG 82

Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 213
               +D + P++  D   IL  F + S  +L +I   W  E + +      IL+G K D 
Sbjct: 83  QED-YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141

Query: 214 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFFS-SATHNINVNKIF 256
                    L    Q  + + + R  A  + A  +   SA     V ++F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQG----------ARIA 148
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++              ++ 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 149 FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK--WNQTAIP 205
             +WD  G  R F  +  A  +DA+  L MFDLTS+ +  ++  W S+ +   + +    
Sbjct: 86  LQLWDTAGQER-FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144

Query: 206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           +LIG K D      PD +     QAR  A       F +SA    NV K  + ++  +  
Sbjct: 145 VLIGNKADL-----PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 96  SDLVSLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
           S    +K   +GD  +GKT   + Y  N      +     N     ++V GA +   +WD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWD 62

Query: 154 VGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTK 211
             G    ++ + P++ + A   +  F L S+ +  ++   W  E + +      +L+GTK
Sbjct: 63  TAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121

Query: 212 FD----DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 256
            D        +       I T Q     K + A  +   S+    NV  +F
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 15/171 (8%)

Query: 99  VSLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  KI ++GD Q GKT+    +  +   E  +     N    +  +   RI  S+WD  G
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSG 64

Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 213
               +D+V P++  D+ A+L  FD++   TL+S++  W  E +++      +L+G K D 
Sbjct: 65  SPY-YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123

Query: 214 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFF--SSATHNINVNKIF 256
                  V L    Q  ++  Q    AK + A  +   S+     +V  IF
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 21/179 (11%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQ----------GARIAF 149
           K   LGD  +GKTS + +Y   +   + +   G++   K ++ +          G RI  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 150 SIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK--WNQTAIPI 206
            +WD  G  R F  +  A  +DA+  L +FDLT+  +  ++  W S+ +   +++    +
Sbjct: 73  QLWDTAGLER-FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
           L G K D       D +     +AR  A+      F +SA +  N++   + ++  +  
Sbjct: 132 LCGNKSDL-----EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 10/165 (6%)

Query: 100 SLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
            +K   +GD  +GKT   + Y  N+     +     N     + V G  +   +WD  G 
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAG- 66

Query: 158 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD-- 213
              +  + P++ + A   +  F L S+ +  +++  W  E R++      +L+GTK D  
Sbjct: 67  QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126

Query: 214 DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 256
           D      D    I + Q     K + A  +   S+    NV  +F
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 14/170 (8%)

Query: 99  VSLKISLLGDCQIGKTS-FVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           + LK  ++GD  +GKT   + Y  +   E  +     +    ++ V G +    ++D  G
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAG 75

Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD- 213
               +D + P++       L  F + +  +  ++   W  E +++      +LIGT+ D 
Sbjct: 76  -QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134

Query: 214 -----DFVRLPPDLQWTIAT-QARAYAKAMKATLFFS-SATHNINVNKIF 256
                   RL    +  I   Q +  AK + A  +   SA     +  +F
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 46/204 (22%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQG-------------- 144
            K  LLG+  +GK+S V +   +   E +    G +     + +                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 145 -----------------------ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 181
                                    I F IWD  G  R    VP+  + A   + +FD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 182 SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 241
           +  TL+    W ++ +  +   I IL+  K D               + + YA+      
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYII-ILVANKIDKNKFQVD------ILEVQKYAQDNNLLF 180

Query: 242 FFSSATHNINVNKIFKFIMAKLFN 265
             +SA    N+  IF  +  +++ 
Sbjct: 181 IQTSAKTGTNIKNIFYMLAEEIYK 204

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 52.9 bits (128), Expect = 8e-09
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 10/160 (6%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+G+  +GK++    + G +           +   + +MV    +   ++D+     
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 160 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDDFV 216
           +   +   C +   A L +F +T R + + +       R       +P IL+G K D   
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD--- 120

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L    + ++  + R  A  +      +SA  + N  ++F
Sbjct: 121 -LARSREVSLE-EGRHLAGTLSCKHIETSAALHHNTRELF 158

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 31/177 (17%), Positives = 68/177 (38%), Gaps = 11/177 (6%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNE-QERSLQMAGLNLINKTLMV 142
           S   +  +    D +  K+ L+G+  +GK++    + G +           +   + +MV
Sbjct: 9   SGRENLYFQGQKDGI-FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV 67

Query: 143 QGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 201
               +   ++D+     +   +   C +   A L +F +T R + + +       R    
Sbjct: 68  DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 127

Query: 202 TA-IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
              +P IL+G K D    L    + ++  + R  A  +      +SA  + N  ++F
Sbjct: 128 HHDLPVILVGNKSD----LARSREVSLE-EGRHLAGTLSCKHIETSAALHHNTRELF 179

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 96  SDLVSLKISLLGDCQIGKTSFV-KYVGN--EQ-----ERSLQMAGLNLINKTLMVQGARI 147
             +  L++ +LGD + GK+S + +++    +                   K ++V G   
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY--------KKEMLVDGQTH 54

Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE---ARKWNQTAI 204
              I +  G              A A++F+F L    +  ++   + +    R   +  +
Sbjct: 55  LVLIREEAGAPD--AK---FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGL 109

Query: 205 PILI---GTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSS-ATHNINVNKIF 256
            + +     +              +   +ARA    MK   ++ + AT+ +NV+++F
Sbjct: 110 ALALVGTQDRISA------SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVF 160

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 140 LMVQGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEAR 197
           +MV G  +   +WD  G    +D + P++       L  F L S  + + +   WY E R
Sbjct: 196 VMVDGKPVNLGLWDTAG-LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254

Query: 198 KWNQTAIPILIGTKFD------DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHN 249
                   IL+GTK D         +L       I   Q  A AK + A  +   SA   
Sbjct: 255 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314

Query: 250 INVNKIF 256
             +  +F
Sbjct: 315 RGLKTVF 321

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 10/160 (6%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG-DSR 159
           ++ LLGD  +GKTS    + G ++    +  G ++  +TL V G      + D    +  
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65

Query: 160 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKFDDFV 216
                  +C +   A + ++ +  R +  S      + R+ +Q   +PI L+G K D   
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD--- 122

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            L    + ++  + RA A         +SAT   NV ++F
Sbjct: 123 -LARCREVSVE-EGRACAVVFDCKFIETSATLQHNVAELF 160

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 26/167 (15%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ ++G   +GK++  ++++ +E        +  S +        K +++ G  +   I 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--------KKVVLDGEEVQIDIL 67

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G    +  +     +     L +F +T   +  +   +  +  R      +P  L+G
Sbjct: 68  DTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126

Query: 210 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            K D    L    Q ++  +A+  A+        +SA    NV+K+F
Sbjct: 127 NKSD----LEDKRQVSVE-EAKNRAEQWNVNYVETSAKTRANVDKVF 168

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 29/168 (17%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ ++G   +GK++     ++    ++     E S +        K +++ G      I 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR--------KQVVIDGETCLLDIL 57

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G    +  +     +     L +F + +  +   I  +  +  R  +   +P+ L+G
Sbjct: 58  DTAGQEE-YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116

Query: 210 TKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIF 256
            K D    LP     T+ T QA+  A++       +SA     V+  F
Sbjct: 117 NKCD----LP---SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 11/159 (6%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           K+ LLG   +GK++    + G E     + AG +  +++++V G   +  ++D+      
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDG- 61

Query: 161 FDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKFDDFVR 217
              +P  C     A + ++ +T + +         + R+  QT  +PI L+G K D    
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD---- 117

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           L    + ++  + RA A         +SA  + NV  +F
Sbjct: 118 LVRSREVSVD-EGRACAVVFDCKFIETSAALHHNVQALF 155

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 50.2 bits (121), Expect = 8e-08
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 28/168 (16%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           KI++LG   +GK+S    FV+    +      E +          K + V G      + 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT--------KLITVNGQEYHLQLV 59

Query: 153 DVGG--DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LI 208
           D  G  +   F        D    + ++ +TS  +   I   + +      +  IPI L+
Sbjct: 60  DTAGQDEYSIFPQTYS--IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLV 117

Query: 209 GTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           G K D    L  +   +   + +A A++  A    SSA  N     +F
Sbjct: 118 GNKKD----LHMERVISYE-EGKALAESWNAAFLESSAKENQTAVDVF 160

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 26/167 (15%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ +LG   +GKTS    FV+   +E      E +          K + +        + 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS--------KIVTLGKDEFHLHLV 77

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G    +  +P +        + ++ +TS  +   I   Y +      +T +P+ L+G
Sbjct: 78  DTAGQDE-YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136

Query: 210 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            K D    L P+ +     + +  A++  AT   SSA  N     IF
Sbjct: 137 NKAD----LSPEREVQAV-EGKKLAESWGATFMESSARENQLTQGIF 178

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 31/183 (16%)

Query: 89  SSG--YDTDSDLVSLKISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLIN 137
           SSG        +   K+ ++G   +GK++     ++    ++     E S +        
Sbjct: 8   SSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-------- 59

Query: 138 KTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE- 195
           K +++ G      I D  G    +  +     +     L +F + +  +   I  +  + 
Sbjct: 60  KQVVIDGETCLLDILDTAGQEE-YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI 118

Query: 196 ARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVN 253
            R  +   +P+ L+G K D    LP     T+ T QA   AK+       +SA     V 
Sbjct: 119 KRVKDSDDVPMVLVGNKCD----LP---TRTVDTKQAHELAKSYGIPFIETSAKTRQGVE 171

Query: 254 KIF 256
             F
Sbjct: 172 DAF 174

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 27/172 (15%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           ++++ G   +GK+S    FVK    E      E + +        + +    +     I 
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR--------QVISCDKSICTLQIT 56

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEAR--KWNQTAIPI-LI 208
           D  G  + F  +         A + ++ +TSR +L  +   Y +    K +  +IPI L+
Sbjct: 57  DTTGSHQ-FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 115

Query: 209 GTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 260
           G K D      P  +   + +A A A+  K     +SA  N NV ++F+ ++
Sbjct: 116 GNKCD----ESPSREVQSS-EAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 26/167 (15%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ ++G   +GK++  ++++ +E        +  S +        K +++ G  +   I 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--------KKVVLDGEEVQIDIL 71

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G    +  +     +     L +F +T   +  +   +  +  R      +P  L+G
Sbjct: 72  DTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

Query: 210 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            K D    L    Q ++  +A+  A+        +SA    NV+K+F
Sbjct: 131 NKSD----LEDKRQVSVE-EAKNRAEQWNVNYVETSAKTRANVDKVF 172

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 32/171 (18%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 152
            +++LG    GK++  VK++            E +              V    +   + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS--------SEETVDHQPVHLRVM 74

Query: 153 DVGG--DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR---KWNQTAIPI- 206
           D       R+ +        A A L ++ + SR + +S   +        K  Q +IP  
Sbjct: 75  DTADLDTPRNCER---YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL 131

Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNINVNKIF 256
           L+G K D    +    Q T A +  A A       F  SA     +V  +F
Sbjct: 132 LLGNKLD----MAQYRQVTKA-EGVALAGRFGCLFFEVSACLDFEHVQHVF 177

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 26/167 (15%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ ++G   +GK++    F+     E        S +        K +++ G  +   I 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--------KKVVLDGEEVQIDIL 57

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G    +  +     +     L +F +T   +  +   +  +  R      +P  L+G
Sbjct: 58  DTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

Query: 210 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            K D    L    Q ++  +A+  A         +SA    NV+K+F
Sbjct: 117 NKSD----LEDKRQVSVE-EAKNRADQWNVNYVETSAKTRANVDKVF 158

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 30/169 (17%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+++ G   +GK++  V+++            E + +            +    ++  I 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR--------HQATIDDEVVSMEIL 81

Query: 153 DVGG--DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LI 208
           D  G  D+   +      +     + ++D+T R +   ++   +          + + L+
Sbjct: 82  DTAGQEDTIQREG---HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138

Query: 209 GTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNINVNKIF 256
           G K D    L    Q +   +    A  +    +  SA T   N+ +IF
Sbjct: 139 GNKAD----LDHSRQVSTE-EGEKLATELACAFYECSACTGEGNITEIF 182

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 17/198 (8%)

Query: 68  SESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQ-- 124
              S   D     L   S +  S   ++S     ++ L+G+  +GK++    + G     
Sbjct: 5   HHHSSGVDLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSM 64

Query: 125 ERSLQMAGLNLINKTLMVQGARIAFS---IWDVGGDSRSFDHVPIAC-KDAVAILFMFDL 180
           +   ++ G +   +TLMV G         +W+  G++     +   C +   A L ++ +
Sbjct: 65  DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENE---WLHDHCMQVGDAYLIVYSI 121

Query: 181 TSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMK 238
           T R +         + R+  QT  IPI L+G K D    L    + +++ + RA A    
Sbjct: 122 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSD----LVRCREVSVS-EGRACAVVFD 176

Query: 239 ATLFFSSATHNINVNKIF 256
                +SA    NV ++F
Sbjct: 177 CKFIETSAAVQHNVKELF 194

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 47.9 bits (115), Expect = 4e-07
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 29/169 (17%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ +LG   +GK++    FV+ +  E+     E S +        K + V   +    I 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--------KQVEVDCQQCMLEIL 56

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G  + F  +     K+      ++ +T++ T N +     +  R  +   +P+ L+G
Sbjct: 57  DTAGTEQ-FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

Query: 210 TKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIF 256
            K D       + +  +   Q +  A+      F  SSA   INVN+IF
Sbjct: 116 NKCDL------EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 30/173 (17%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           ++ + G   +GK+S    FVK    +      E + +        + +    +     I 
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR--------QVISCDKSVCTLQIT 61

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEAR--KWNQTAIPI-LI 208
           D  G  + F  +         A + +F +TS+ +L  +   Y      K +   IP+ L+
Sbjct: 62  DTTGSHQ-FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120

Query: 209 GTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIFKFIM 260
           G K D+  R        + T +A+A A+  K     +SA  N NV ++F+ ++
Sbjct: 121 GNKCDETQR-------EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 26/167 (15%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ +LG   +GK++    FV     E+     E   +        K + V  +     I 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR--------KEIEVDSSPSVLEIL 56

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G  + F  +     K+    + ++ L ++ +   I     +  R      +P+ L+G
Sbjct: 57  DTAGTEQ-FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115

Query: 210 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            K D    L  + + + + + RA A+        +SA     V+++F
Sbjct: 116 NKVD----LESEREVSSS-EGRALAEEWGCPFMETSAKSKTMVDELF 157

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 29/168 (17%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ ++G   +GK++     ++    ++     E S +        K +++ G      I 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR--------KQVVIDGETCLLDIL 56

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G    +  +     +     L +F + +  +   I  +  +  R  +   +P+ L+G
Sbjct: 57  DTAGQEE-YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 210 TKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVNKIF 256
            K D    L      T+ + QA+  A++       +SA     V   F
Sbjct: 116 NKSD----LA---ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 26/167 (15%)

Query: 102 KISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLINKTLMVQGARIAFSIW 152
           K+ ++G   +GK++    F++           E S          K   V G      I 
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT--------KICSVDGIPARLDIL 62

Query: 153 DVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE-ARKWNQTAIPI-LIG 209
           D  G    F  +     +     L +F +  R + N +   +++  R  ++   P+ L+G
Sbjct: 63  DTAGQEE-FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

Query: 210 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
            K D    L    Q   + +A A+  +     F +SA   +NV++ F
Sbjct: 122 NKAD----LESQRQVPRS-EASAFGASHHVAYFEASAKLRLNVDEAF 163

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 27/184 (14%)

Query: 86  RTFSSGYDTDSDLVSLKISLLGDCQIGKTS----FVKYVGNEQ-----ERSLQMAGLNLI 136
            + ++      +L + K+ ++GD  +GK++    F + +  +      E S         
Sbjct: 4   GSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL------- 56

Query: 137 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 195
            K   +        + D  G    F  +     +     L ++ +T + +   +  ++  
Sbjct: 57  -KHTEIDNQWAILDVLDTAGQEE-FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQL 114

Query: 196 -ARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNINV 252
             R  ++ + P+ L+  K D    L    + T   Q +  A         +SA    +NV
Sbjct: 115 ILRVKDRESFPMILVANKVD----LMHLRKVTRD-QGKEMATKYNIPYIETSAKDPPLNV 169

Query: 253 NKIF 256
           +K F
Sbjct: 170 DKTF 173

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 17/164 (10%)

Query: 102 KISLLGDCQIGKTSF-VKYVGNE--QERSLQMAGLNLINKTLMVQG---ARIAFSIWDVG 155
           ++ L+G+  +GK++    + G     +   ++ G +   +TLMV G     I   +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 156 GDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKF 212
           G++     +   C +   A L ++ +T R +         + R+  QT  IPI L+G K 
Sbjct: 68  GENE---WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
           D         +    ++ RA A         +SA    NV ++F
Sbjct: 125 DL-----VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 19/191 (9%)

Query: 102 KISLLGDCQIGKTSFVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+ L+G    GK+S    +        + ++     +  + +     +  ++WD GG   
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64

Query: 160 SFDH-----VPIACKDAVAILFMFDLTSRCTLNSIVGWYS---EARKWNQTAIPILIGTK 211
             ++          +    ++ +FD+ S   L  I  +     + RK++  A   ++  K
Sbjct: 65  FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124

Query: 212 FDDFVRLPPDLQWTI------ATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
            D    +  D +  +           +        + F ++  + ++ K +  I+  L  
Sbjct: 125 MD---LVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIP 181

Query: 266 LPWTVKRNLTI 276
                + NL  
Sbjct: 182 NMSNHQSNLKK 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 43/357 (12%), Positives = 99/357 (27%), Gaps = 119/357 (33%)

Query: 1   MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRF-----------------IW 43
           + K++++   N T         NI+  +    +  RR  +                   W
Sbjct: 202 LQKLLYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 44  E------RILVCSIGKQPAVRYQKLTRR--SSSESSPAPDTMEAGLV--ELSRTFSSGYD 93
                  +IL+ +       R++++T    +++ +  + D     L   E+        D
Sbjct: 260 NAFNLSCKILLTT-------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 94  TD-SDL--VSLKISLLGDCQIGKT--------SFVKYVGNEQERSLQMAGLNLINKTLMV 142
               DL    L  +      I ++           K+V  ++  ++  + LN++      
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY- 371

Query: 143 QGARIAFSIWDVGGDSRSF-DHVPI----------ACKDAVAILFMFDLTSRCTLN---- 187
           +      S+         F     I              +  ++ +  L     +     
Sbjct: 372 RKMFDRLSV---------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 188 -------------------------SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD- 221
                                    SIV  Y+  + ++            DD +    D 
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-----------DDLIPPYLDQ 471

Query: 222 -LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN--LPWTVKRNLT 275
                I    +      + TLF       + ++  F+F+  K+ +    W    ++ 
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLF-----RMVFLD--FRFLEQKIRHDSTAWNASGSIL 521

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.98
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.98
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.98
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.98
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.98
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.98
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.98
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.98
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.98
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.98
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.98
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.98
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.98
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.95
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.95
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.93
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.92
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.91
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.91
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.91
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.91
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.91
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.89
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.89
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.88
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.88
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.87
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.87
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.85
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.84
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.83
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.82
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.82
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.82
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.81
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.81
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.8
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.8
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.8
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.79
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.79
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.79
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.79
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.79
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.78
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.78
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.78
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.78
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.78
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.78
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.77
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.77
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.76
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.76
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.75
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.75
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.75
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.75
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.75
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.73
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.73
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.72
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.72
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.72
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.72
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.7
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.69
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.68
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.68
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.66
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.66
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.66
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.65
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.62
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.62
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.61
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.61
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.59
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.58
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.57
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.57
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.57
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.57
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.53
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.5
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.5
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.5
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.48
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.38
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.35
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.34
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.32
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.29
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.29
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.22
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.13
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.11
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.11
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.09
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.06
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.05
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.04
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.0
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.92
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.43
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.41
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.39
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.32
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.22
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.21
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.1
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.05
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.98
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.97
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.9
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.83
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.7
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.63
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.62
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.52
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.31
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.3
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.2
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.72
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.57
2xxa_A	433	Signal recognition particle protein; protein trans	96.37
3end_A	307	Light-independent protochlorophyllide reductase ir	96.36
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.17
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.06
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.86
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.57
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.39
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.2
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.15
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.09
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.08
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.08
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.07
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.91
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	94.86
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.84
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.79
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	94.7
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.54
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.52
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.51
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.49
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.46
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.41
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.38
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.36
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.36
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.34
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.34
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	94.3
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.3
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.25
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.2
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.15
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.15
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.15
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.13
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.09
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.09
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.06
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.06
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.03
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.98
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	93.97
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	93.96
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.93
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.93
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.92
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.87
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.86
2chg_A	226	Replication factor C small subunit; DNA-binding pr	93.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	93.85
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.85
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	93.84
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.83
4a74_A	231	DNA repair and recombination protein RADA; hydrola	93.81
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.8
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.8
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.79
3co5_A	143	Putative two-component system transcriptional RES	93.77
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.76
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.74
1g6h_A	257	High-affinity branched-chain amino acid transport	93.7
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	93.66
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.65
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	93.64
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.64
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.64
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	93.63
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.62
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	93.6
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.6
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.58
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.57
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.57
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.53
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.51
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.51
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.51
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.48
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.46
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	93.46
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	93.45
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.44
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.43
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.41
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.4
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.37
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.33
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.33
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.33
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.32
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.31
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.27
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.25
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	93.24
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.23
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.22
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.21
1via_A	175	Shikimate kinase; structural genomics, transferase	93.2
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.18
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.18
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.14
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.1
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.09
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.09
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	93.07
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.04
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	93.03
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.02
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.0
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	92.97
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	92.93
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	92.93
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	92.9
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	92.87
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.85
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	92.81
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.81
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.78
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	92.71
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.63
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	92.62
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	92.61
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	92.6
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	92.6
2vli_A	183	Antibiotic resistance protein; transferase, tunica	92.57
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	92.57
2cvh_A	220	DNA repair and recombination protein RADB; filamen	92.52
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	92.48
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	92.48
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	92.46
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	92.44
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	92.42
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	92.4
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	92.38
3bos_A	242	Putative DNA replication factor; P-loop containing	92.37
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.3
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	92.3
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	92.29
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	92.28
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	92.25
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	92.24
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	92.2
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	92.19
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	92.17
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	92.13
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.13
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.12
2og2_A	359	Putative signal recognition particle receptor; nuc	92.09
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	92.09
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	92.08
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	92.08
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.08
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	92.07
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	92.06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	92.03
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	92.02
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	91.96
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	91.95
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	91.77
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	91.74
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	91.71
2ewv_A	372	Twitching motility protein PILT; pilus retraction	91.7
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	91.67
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	91.66
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	91.64
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	91.62
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	91.59
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	91.55
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	91.54
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	91.44
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	91.42
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	91.42
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	91.41
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	91.4
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	91.36
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	91.21
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	91.19
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	91.18
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	91.1
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	91.08
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.07
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	90.94
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	90.9
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	90.89
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	90.8
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	90.77
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	90.77
1p9r_A	418	General secretion pathway protein E; bacterial typ	90.76
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	90.58
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	90.54
1tue_A	212	Replication protein E1; helicase, replication, E1E	90.52
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	90.47
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	90.4
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	90.36
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	90.14
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.1
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	90.08
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	90.01
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	89.98
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	89.88
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	89.85
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	89.8
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	89.79
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	89.78
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	89.7
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	89.59
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	89.58
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	89.57
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	89.56
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	89.55
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	89.5
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	89.42
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	89.34
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	89.34
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	89.24
2fna_A	357	Conserved hypothetical protein; structural genomic	89.24
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	89.22
3uc9_A	233	Increased recombination centers protein 6; rossman	89.11
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	89.08
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	89.06
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	89.06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	88.99
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	88.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.91
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	88.88
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	88.76
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	88.66
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	88.66
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	88.66
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	88.54
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	88.41
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	88.38
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	88.35
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	88.33
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.21
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	88.18
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	88.18
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	88.15
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	88.12
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	88.09
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	87.97
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	87.95
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	87.93
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	87.91
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	87.9
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	87.85
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	87.82
2qgz_A	308	Helicase loader, putative primosome component; str	87.76
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	87.74
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	87.56
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	87.46
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	87.45
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	87.44
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	87.36
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	87.34
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	87.34
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	87.3
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	87.28
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	87.24
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	87.23
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	87.16
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	87.16

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.1e-39  Score=273.70  Aligned_cols=168  Identities=23%  Similarity=0.423  Sum_probs=139.5

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      ..+++++||+|||++|||||||+ +|+++.|. .+.+|+|.++..+.+.+++..+.++||||+|+++|..+++.|+++++
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~   87 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA   87 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence            34567899999999999999999 99999998 66679999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  251 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  251 (283)
                      ++++|||+++++||+++..|+..+..... +.|+||||||+||     .+.+.+..++++++|+++++.|+||||++|.|
T Consensus        88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl-----~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~n  162 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-----ADKRQVSIEEGERKAKELNVMFIETSAKAGYN  162 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTC-----GGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred             EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccch-----HhcCcccHHHHhhHHHHhCCeeEEEeCCCCcC
Confidence            99999999999999999999999988754 4455799999997     23345668999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCc
Q 023335          252 VNKIFKFIMAKLFNLP  267 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~  267 (283)
                      |+++|+.|++.+.+..
T Consensus       163 V~e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          163 VKQLFRRVAAALPGME  178 (216)
T ss_dssp             HHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999987654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.2e-32  Score=226.37  Aligned_cols=161  Identities=20%  Similarity=0.340  Sum_probs=137.0

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ....+||+|+|++|||||||+ +++++.+...+.+++.++ .+.+.+++..+.+++|||+|++.+.     +++++|+++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            345899999999999999999 999999884444344444 4788899999999999999998876     889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINV  252 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v  252 (283)
                      +|||+++++||+++..|+.++..+.  .+.|.+|||||+||   .....+.+..+++.++++.++ +.|+++||++|.||
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl---~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI---SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC---BTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc---ccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            9999999999999999999998874  35566899999996   222334455888999999997 89999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 023335          253 NKIFKFIMAKLFNL  266 (283)
Q Consensus       253 ~~lf~~l~~~i~~~  266 (283)
                      +++|+++++.+.+.
T Consensus       168 ~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          168 ERVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.2e-32  Score=225.43  Aligned_cols=164  Identities=21%  Similarity=0.361  Sum_probs=142.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            45899999999999999999 99999887 55668888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++.++++.+..|+..+..... +.|++||+||+|+.     ..+.+..++++++++.++++++++||++|.||++
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-----SRRDVKREEGEAFAREHGLIFMETSAKTACNVEE  173 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988754 44557999999962     2233447788899999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|++|.+.+.++
T Consensus       174 l~~~l~~~i~~~  185 (191)
T 2a5j_A          174 AFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=7.9e-33  Score=230.40  Aligned_cols=165  Identities=26%  Similarity=0.409  Sum_probs=139.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            345799999999999999999 99999987 5566888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v  252 (283)
                      |+|||++++++|+.+..|+..+..... +.|++||+||+||.     ..+.+..++++++++.+++ .++++||++|.||
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-----ELREVSLAEAQSLAEHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc-----cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence            999999999999999999999998864 45557999999972     2233447788999999999 9999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 023335          253 NKIFKFIMAKLFNL  266 (283)
Q Consensus       253 ~~lf~~l~~~i~~~  266 (283)
                      +++|++|++.+.+.
T Consensus       181 ~~l~~~l~~~i~~~  194 (201)
T 2hup_A          181 EEAFLRVATELIMR  194 (201)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4.3e-32  Score=224.12  Aligned_cols=170  Identities=19%  Similarity=0.333  Sum_probs=146.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      ......+||+++|++|||||||+ +++++.+. .+.+|++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            34456899999999999999999 99999988 55567776654 56778999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCc
Q 023335          173 AILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNI  250 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~  250 (283)
                      ++|+|||++++++|+++ ..|+..+....++.|.+|||||+||   ..+....+..+++.++++.+++. ++++||++|.
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  173 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL---RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKI  173 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGG---CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh---ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence            99999999999999997 7899999988777777899999997   22223445588899999999998 9999999999


Q ss_pred             CHHHHHHHHHHHHhCCcc
Q 023335          251 NVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~~~  268 (283)
                      ||+++|++|++.+.+...
T Consensus       174 gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          174 GLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             SHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence            999999999999987653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2e-32  Score=222.32  Aligned_cols=166  Identities=22%  Similarity=0.375  Sum_probs=145.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC-eEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.+|++.++..+.+.+++ ..+.+.+|||+|++.+..++..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            45799999999999999999 99999887 5567888888888888877 678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC---CCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN---QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      |+|||++++++|+.+..|+..+..+.   ...|+ ++|+||+|+.     ..+....+++.++++.++++++++||++|.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE-----HMRTIKPEKHLRFCQENGFSSHFVSAKTGD  158 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc-----cccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            99999999999999999999988753   24564 7999999962     122344678889999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCcc
Q 023335          251 NVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~~~  268 (283)
                      ||+++|++|.+.+.+.++
T Consensus       159 gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          159 SVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             THHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHhhhh
Confidence            999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=225.85  Aligned_cols=165  Identities=16%  Similarity=0.183  Sum_probs=141.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc-chhhhcccCcEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAI  174 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~i  174 (283)
                      ...+||+|+|++|||||||+ +|++..+. ...++++.++..+.+.+++..+.+.+|||+|++.+.. +...+++++|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            35799999999999999999 99876655 5556777788888888999999999999999998765 778889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      |+|||+++++||+.+..|+.++.....  +.|+||||||+||.     ..+.+..++++++++.++++++++||++|.||
T Consensus       101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-----RSREVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc-----ccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            999999999999999999999988753  55668999999972     12334577888999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023335          253 NKIFKFIMAKLFNLP  267 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~  267 (283)
                      +++|+++++.+.+..
T Consensus       176 ~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          176 RELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.4e-32  Score=224.58  Aligned_cols=166  Identities=21%  Similarity=0.357  Sum_probs=119.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. .+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            35799999999999999999 99998887 66678888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+..+.. +.|++||+||+||.     ..+.+..++++++++.++++++++||++|.||++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-----DKRQVSKERGEKLALDYGIKFMETSAKANINVEN  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-----SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC-----ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999988754 44558999999972     1233447788899999999999999999999999


Q ss_pred             HHHHHHHHHhCCcc
Q 023335          255 IFKFIMAKLFNLPW  268 (283)
Q Consensus       255 lf~~l~~~i~~~~~  268 (283)
                      +|++|.+.+.+...
T Consensus       161 l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          161 AFFTLARDIKAKMD  174 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999876543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-32  Score=231.01  Aligned_cols=166  Identities=19%  Similarity=0.249  Sum_probs=137.5

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCcc--ccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC-cccchhhhcccCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAV  172 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad  172 (283)
                      ....+||+|+|++|||||||+ +|++...  ...++++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+|
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            345799999999999999999 9996543  46667788888888899999999999999999887 5567778899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      ++|+|||+++++||+.+..|+..+...  ..+.|+||||||+||.     ..+.+..++++.++..++++|+++||++|.
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-----~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~  188 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-----RCREVSVSEGRACAVVFDCKFIETSAAVQH  188 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-----cCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999999999999988764  2355668999999972     223344677888899999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCc
Q 023335          251 NVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~~  267 (283)
                      ||+++|++|++.+....
T Consensus       189 ~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          189 NVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999885443

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.9e-32  Score=224.39  Aligned_cols=161  Identities=15%  Similarity=0.156  Sum_probs=136.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.+|++.++ ...+.+++..+.+++|||+|++.+..+ ..+++++|++|
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            45799999999999999999 99999988 4555777665 456778999999999999999998875 67999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC-CCCc
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNI  250 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa-~~~~  250 (283)
                      +|||++++++|+.+..|+.++..+.    .+.|++|||||+|+.     ..+.+..+++.++++.++++++++|| ++|.
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~  171 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-----QYRQVTKAEGVALAGRFGCLFFEVSACLDFE  171 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-----hcCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence            9999999999999999999998763    466778999999961     22334578899999999999999999 8999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023335          251 NVNKIFKFIMAKLFN  265 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~  265 (283)
                      ||+++|++|++.+.+
T Consensus       172 gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          172 HVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhh
Confidence            999999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.8e-32  Score=219.73  Aligned_cols=165  Identities=23%  Similarity=0.423  Sum_probs=147.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            45799999999999999999 99999887 66678888988889999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      +|||++++++++.+..|+..+....++.|.++|+||+|+.     .......+++..++...+++++++||++|.|++++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP-----ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM  161 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc-----hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            9999999999999999999999888777778999999962     22334468889999999999999999999999999


Q ss_pred             HHHHHHHHhCCc
Q 023335          256 FKFIMAKLFNLP  267 (283)
Q Consensus       256 f~~l~~~i~~~~  267 (283)
                      |++|.+.+.+..
T Consensus       162 ~~~l~~~~~~~~  173 (181)
T 3tw8_B          162 FNCITELVLRAK  173 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.3e-32  Score=229.95  Aligned_cols=176  Identities=24%  Similarity=0.304  Sum_probs=142.5

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      ......+||+|+|++|||||||+ +++++.+. .+.+|++.++ ...+.+++..+.+.+|||+|++.|..++..+++++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            34456799999999999999999 99999988 5556777776 566778888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHH-HHHHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEE
Q 023335          173 AILFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFF  243 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e  243 (283)
                      ++|+|||+++++||++ +..|+..+....++.|++|||||+||.....       ...+.+..+++.++++.+++ +|++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999 6899999999887777789999999721100       00134558889999999999 9999


Q ss_pred             EcCCCCcC-HHHHHHHHHHHHhCCccccc
Q 023335          244 SSATHNIN-VNKIFKFIMAKLFNLPWTVK  271 (283)
Q Consensus       244 ~Sa~~~~~-v~~lf~~l~~~i~~~~~~~~  271 (283)
                      +||++|.| |+++|+++++.+.+.....+
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~~~  209 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNKPSPLP  209 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC------
T ss_pred             eccCCCcccHHHHHHHHHHHHhccCcCCC
Confidence            99999998 99999999999988765443

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-32  Score=227.17  Aligned_cols=164  Identities=23%  Similarity=0.407  Sum_probs=146.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999 99999988 66678899998899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+....... |++||+||+|+.     ..+.+..++++.+++..+++++++||++|.||++
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-----ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999886544 447999999962     2233447788889999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|++|.+.+.+.
T Consensus       179 l~~~l~~~i~~~  190 (201)
T 2ew1_A          179 LFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2.2e-31  Score=218.99  Aligned_cols=163  Identities=26%  Similarity=0.460  Sum_probs=144.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            35799999999999999999 99999987 56678888888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+..+.. +.|++||+||+|+.     ..+....++++++++.++++++++||++|.|+++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  174 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE-----DERVVPAEDGRRLADDLGFEFFEASAKENINVKQ  174 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999999999988864 45557999999972     2223446788999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|++|.+.+.+
T Consensus       175 l~~~l~~~i~~  185 (189)
T 2gf9_A          175 VFERLVDVICE  185 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.2e-31  Score=216.99  Aligned_cols=166  Identities=19%  Similarity=0.172  Sum_probs=143.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. ...+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            45899999999999999999 99988887 4555777766 778888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      +|||++++++|+.+..|+.++.....  +.|+++|+||+|+.     ..+.+..++++++++.++++++++||++|.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  157 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-----MERVISYEEGKALAESWNAAFLESSAKENQTAV  157 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-----hcceecHHHHHHHHHHhCCcEEEEecCCCCCHH
Confidence            99999999999999999999977643  55668999999962     234455888999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCccc
Q 023335          254 KIFKFIMAKLFNLPWT  269 (283)
Q Consensus       254 ~lf~~l~~~i~~~~~~  269 (283)
                      ++|++|++.+.+....
T Consensus       158 ~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          158 DVFRRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999877643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.9e-31  Score=217.80  Aligned_cols=164  Identities=15%  Similarity=0.195  Sum_probs=142.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      .....+||+|+|++|||||||+ +++++.+. .+.++++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            3456899999999999999999 99998888 5555666666 6778889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC-CCc
Q 023335          174 ILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT-HNI  250 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~-~~~  250 (283)
                      +++|||++++++|+.+..|+..+...  ..+.|+++|+||+|+.     ..+.+..++++++++.++++++++||+ +|.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-----HLRKVTRDQGKEMATKYNIPYIETSAKDPPL  167 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-----TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch-----hccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence            99999999999999999999998764  3355668999999972     223455788999999999999999999 999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023335          251 NVNKIFKFIMAKLFN  265 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~  265 (283)
                      ||+++|++|.+.+.+
T Consensus       168 ~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          168 NVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.4e-31  Score=217.08  Aligned_cols=163  Identities=23%  Similarity=0.391  Sum_probs=144.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            45799999999999999999 99999887 45568888888888899999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++..+++.+..|+..+..... +.|+++|+||+|+.     .......++++++++.++++++++||++|.|+++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-----AQRDVTYEEAKQFAEENGLLFLEASAKTGENVED  167 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988764 45557999999962     2233447788999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|++|.+.+.+
T Consensus       168 l~~~l~~~i~~  178 (179)
T 1z0f_A          168 AFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-31  Score=219.82  Aligned_cols=169  Identities=22%  Similarity=0.413  Sum_probs=149.0

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            456799999999999999999 99999988 6667888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      |+|||++++.+++.+..|+.++..+.  .+.|++||+||+|+      .......+++.++++.++++++++||++|.||
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK------ENREVDRNEGLKFARKHSMLFIEASAKTCDGV  165 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS------SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC------cccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence            99999999999999999999998764  34555899999996      12334467888999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCccccc
Q 023335          253 NKIFKFIMAKLFNLPWTVK  271 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~~~~~  271 (283)
                      +++|++|.+.+.+.++...
T Consensus       166 ~~l~~~l~~~~~~~~~~~~  184 (195)
T 1x3s_A          166 QCAFEELVEKIIQTPGLWE  184 (195)
T ss_dssp             HHHHHHHHHHHHTSGGGTC
T ss_pred             HHHHHHHHHHHHhhhhhhc
Confidence            9999999999998775443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.2e-31  Score=215.90  Aligned_cols=163  Identities=26%  Similarity=0.485  Sum_probs=137.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. ...+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            35799999999999999999 99999887 56678888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++.++++.+..|+..+..... +.|+++|+||+|+.     ..+.+..++++++++.++++++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-----KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-----cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            99999999999999999999887653 44557999999962     1223447788899999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|++|.+.+.+
T Consensus       159 l~~~l~~~~~~  169 (170)
T 1z08_A          159 LFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.98  E-value=1.5e-31  Score=217.43  Aligned_cols=161  Identities=19%  Similarity=0.300  Sum_probs=134.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ...+||+++|++|||||||+ +++++.+..+.+|.+.. ..+.+.+++..+.+++|||+|+++     ..+++++|++|+
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            45799999999999999999 99999988766677644 467788899999999999999987     568899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcC
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNIN  251 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~  251 (283)
                      |||+++++||+++..|++.+....    ++.|++|||||+|+.   ....+.+..++++++++.+ +++++++||++|.|
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS---ASSPRVVGDARARALXADMKRCSYYETXATYGLN  155 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB---TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---ccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence            999999999999999877666542    345558999999962   1223345578888898886 68999999999999


Q ss_pred             HHHHHHHHHHHHhCCc
Q 023335          252 VNKIFKFIMAKLFNLP  267 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~  267 (283)
                      |+++|+++++.+.+..
T Consensus       156 i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          156 VDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=4.2e-31  Score=214.85  Aligned_cols=166  Identities=25%  Similarity=0.437  Sum_probs=137.6

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      ....+||+++|++|||||||+ +++++.+.  ...+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            346899999999999999999 99999885  456688888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          174 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      +|+|||++++.+++.+..|+..+..... +.|+++|+||+|+.   .  ...+..++++++++.++++++++||++|.|+
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA---H--ERVVKREDGEKLAKEYGLPFMETSAKTGLNV  161 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT---S--CCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC---c--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            9999999999999999999999998764 45557999999972   1  2334467788899999999999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023335          253 NKIFKFIMAKLFNLP  267 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~  267 (283)
                      +++|+++.+.+.+..
T Consensus       162 ~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          162 DLAFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.98  E-value=9.9e-32  Score=221.96  Aligned_cols=163  Identities=23%  Similarity=0.414  Sum_probs=138.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35799999999999999999 99999887 56678888888889999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN  253 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~  253 (283)
                      +|||+++..+++.+..|+..+...... .|++||+||+|+.     ..+.+..++++++++.+ +++++++||++|.||+
T Consensus       104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A          104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-----TDREITRQQGEKFAQQITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence            999999999999999999999888654 4557999999962     22334467788888885 7899999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023335          254 KIFKFIMAKLFN  265 (283)
Q Consensus       254 ~lf~~l~~~i~~  265 (283)
                      ++|++|.+.+.+
T Consensus       179 ~l~~~l~~~i~~  190 (192)
T 2il1_A          179 EIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.98  E-value=3.4e-31  Score=215.57  Aligned_cols=166  Identities=28%  Similarity=0.438  Sum_probs=144.4

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            456799999999999999999 99999888 5556888888888889999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |+|||++++.+|+.+..|+..+..... +.|+++|+||+|+.     .......++++++++.++++++++||++|.|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-----DARKVTAEDAQTYAQENGLFFMETSAKTATNVK  163 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence            999999999999999999999998864 44557999999972     123344778889999999999999999999999


Q ss_pred             HHHHHHHHHHhCCc
Q 023335          254 KIFKFIMAKLFNLP  267 (283)
Q Consensus       254 ~lf~~l~~~i~~~~  267 (283)
                      ++|++|.+.+.+.+
T Consensus       164 ~l~~~l~~~~~~~~  177 (181)
T 2efe_B          164 EIFYEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999886654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.98  E-value=2.2e-31  Score=215.32  Aligned_cols=162  Identities=21%  Similarity=0.269  Sum_probs=132.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC--cccchhhhcccCcEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL  175 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~~ad~ii  175 (283)
                      ..+||+++|++|||||||+ +++++.+...+++.|.++..+.+.+++..+.+.+|||+|++.  +..+...+++.+|+++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i   82 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV   82 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence            4689999999999999999 999998886677888888888889999999999999999988  5677788899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      +|||++++++|+.+..|+..+....  .+.|+++|+||+|+.    + .+.+..++++.++..++++++++||++|.||+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  157 (175)
T 2nzj_A           83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA----R-CREVSVEEGRACAVVFDCKFIETSATLQHNVA  157 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT----T-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc----c-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence            9999999999999999999988753  355668999999972    1 23344677888999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023335          254 KIFKFIMAKLFN  265 (283)
Q Consensus       254 ~lf~~l~~~i~~  265 (283)
                      ++|++|.+.+..
T Consensus       158 ~l~~~l~~~~~~  169 (175)
T 2nzj_A          158 ELFEGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998854

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.98  E-value=1.9e-31  Score=214.70  Aligned_cols=162  Identities=16%  Similarity=0.207  Sum_probs=129.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc-chhhhcccCcEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF  176 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~iil  176 (283)
                      .+||+++|++|||||||+ ++++..+. ...++.+.+.....+.+++..+.+.+|||+|++.+.. +...+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            479999999999999999 99987776 4455667788888888999999999999999999876 77788999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||++++++|+.+..|+.++.....  +.|.++|+||+|+.     ..+.+..+++.++++.++++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-----RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh-----hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHH
Confidence            9999999999999999999988765  56668999999962     2344557889999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|+++++.+...
T Consensus       157 l~~~l~~~i~~~  168 (169)
T 3q85_A          157 LFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.98  E-value=4.1e-31  Score=217.93  Aligned_cols=165  Identities=21%  Similarity=0.390  Sum_probs=147.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            45799999999999999999 99999888 66678888998899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+..+.... |++||+||+|+.     .......++++.+++.++++++++||++|.||++
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999998886544 457999999972     2233446788999999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023335          255 IFKFIMAKLFNLP  267 (283)
Q Consensus       255 lf~~l~~~i~~~~  267 (283)
                      +|++|.+.+.+..
T Consensus       169 l~~~l~~~i~~~~  181 (196)
T 3tkl_A          169 SFMTMAAEIKKRM  181 (196)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.98  E-value=2.1e-31  Score=214.10  Aligned_cols=164  Identities=25%  Similarity=0.395  Sum_probs=143.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            4789999999999999999 99999887 566788888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||++++.+++++..|+..+..... +.|+++|+||+|+.   .... ..+..+++.++++.++++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL---QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND  158 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG---GSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc---ccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999988764 44557999999972   2211 33457788899999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|++|.+.+.+
T Consensus       159 l~~~l~~~i~~  169 (170)
T 1ek0_A          159 VFLGIGEKIPL  169 (170)
T ss_dssp             HHHHHHTTSCC
T ss_pred             HHHHHHHHHhh
Confidence            99999887643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.98  E-value=1.4e-31  Score=214.81  Aligned_cols=162  Identities=20%  Similarity=0.392  Sum_probs=145.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.+. .+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            4799999999999999999 99999887 566788889888899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |||++++++++.+..|+..+.....+.|+++|+||+|+.     ..+....++++++++.++++++++||++|.|++++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  158 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL-----DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF  158 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC-----cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998877677778999999962     112344678889999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      ++|.+.+.+
T Consensus       159 ~~l~~~~~~  167 (168)
T 1z2a_A          159 KYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998865

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.98  E-value=2.7e-31  Score=213.43  Aligned_cols=163  Identities=25%  Similarity=0.430  Sum_probs=142.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999 99998887 45568888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++++.+..|+..+..... ..|+++|+||+|+.     .......+++.++++..+++++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  158 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-----NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-----cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999988754 44457999999962     1223346788889999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|++|.+.+.+
T Consensus       159 l~~~i~~~~~~  169 (170)
T 1r2q_A          159 IFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHTSCC
T ss_pred             HHHHHHHHHhh
Confidence            99999987643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.98  E-value=4.6e-31  Score=214.02  Aligned_cols=165  Identities=22%  Similarity=0.380  Sum_probs=142.0

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            456799999999999999999 99999887 6667889888888999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCC
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATH  248 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~  248 (283)
                      ++|||+++..+++.+..|+.++....     .+.|.++|+||+|+.      ......+++.++++ ..+++++++||++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  157 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS------ERQVSTEEAQAWCRDNGDYPYFETSAKD  157 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS------SCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc------ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence            99999999999999999999998764     345668999999972      23345778888888 5678999999999


Q ss_pred             CcCHHHHHHHHHHHHhCCc
Q 023335          249 NINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~~  267 (283)
                      |.|++++|+++++.+.+.+
T Consensus       158 ~~gi~~l~~~l~~~~~~~~  176 (177)
T 1wms_A          158 ATNVAAAFEEAVRRVLATE  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHHHHHhhc
Confidence            9999999999999997653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.3e-32  Score=226.75  Aligned_cols=164  Identities=23%  Similarity=0.434  Sum_probs=145.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            45799999999999999999 99999887 55568888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+..+.. +.|.+||+||+|+.     ..+....++++.+++.++++++++||++|.||++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME-----EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ  175 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999999999998864 44557999999961     2234457888999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|++|.+.+.+.
T Consensus       176 l~~~l~~~i~~~  187 (191)
T 3dz8_A          176 AFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.98  E-value=6.6e-31  Score=211.33  Aligned_cols=163  Identities=27%  Similarity=0.466  Sum_probs=143.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      .+.+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..+...+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            46799999999999999999 99999987 55678888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++.+++.+..|+..+...... .|+++|+||+|+.     .......+++..+++.++++++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-----DVREVMERDAKDYADSIHAIFVETSAKNAININE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            999999999999999999999988544 4447999999972     2233447788899999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|++|.+.+.+
T Consensus       159 l~~~i~~~i~~  169 (170)
T 1z0j_A          159 LFIEISRRIPS  169 (170)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.98  E-value=1e-30  Score=217.81  Aligned_cols=165  Identities=20%  Similarity=0.372  Sum_probs=146.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            45799999999999999999 99999988 66678899998889999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+...... .|++||+||+|+.    . .+....+++..+++.++++++++||++|.||++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  160 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK----D-KRVVEYDVAKEFADANKMPFLETSALDSTNVED  160 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT----T-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----c-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999887644 4557999999972    1 123446788889999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023335          255 IFKFIMAKLFNLP  267 (283)
Q Consensus       255 lf~~l~~~i~~~~  267 (283)
                      +|++|.+.+.+..
T Consensus       161 l~~~l~~~i~~~~  173 (206)
T 2bcg_Y          161 AFLTMARQIKESM  173 (206)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.98  E-value=5.8e-31  Score=217.03  Aligned_cols=165  Identities=25%  Similarity=0.393  Sum_probs=145.2

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+|+|++|||||||+ +++++.+. ...++.+.++..+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            345799999999999999999 99999988 5556888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |+|||++++.+|+.+..|+..+..... ..|+++|+||+||.     ..+....++++.+++..+++++++||++|.|++
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-----QAREVPTEEARMFAENNGLLFLETSALDSTNVE  176 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999987754 44557999999972     112344778889999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 023335          254 KIFKFIMAKLFNL  266 (283)
Q Consensus       254 ~lf~~l~~~i~~~  266 (283)
                      ++|++|.+.+.++
T Consensus       177 ~l~~~l~~~i~~~  189 (193)
T 2oil_A          177 LAFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=7.8e-31  Score=216.40  Aligned_cols=168  Identities=17%  Similarity=0.259  Sum_probs=142.7

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            346799999999999999999 99999887 4455666554 56677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335          175 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSS  245 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~S  245 (283)
                      |+|||++++++|+.+. .|+..+..+.++.|++||+||+|+.....       ...+.+..+++.++++.+++ +++++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  173 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  173 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence            9999999999999997 89999999877777899999999732100       00123447888999999998 899999


Q ss_pred             CCCCcCHHHHHHHHHHHHhC
Q 023335          246 ATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~  265 (283)
                      |++|.||+++|++|.+.++.
T Consensus       174 a~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          174 ALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.98  E-value=3.5e-31  Score=212.95  Aligned_cols=161  Identities=26%  Similarity=0.457  Sum_probs=138.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence            689999999999999999 99999887 6667888888888888899899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ||++++++++.+..|+..+..... +.|+++|+||+|+      .......+++.++++.++++++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  156 (170)
T 1g16_A           83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  156 (170)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC------TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC------CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            999999999999999999988864 4455799999996      122344678888999999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 023335          257 KFIMAKLFNL  266 (283)
Q Consensus       257 ~~l~~~i~~~  266 (283)
                      ++|.+.+.++
T Consensus       157 ~~l~~~~~~~  166 (170)
T 1g16_A          157 FTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.98  E-value=3.2e-31  Score=216.79  Aligned_cols=165  Identities=24%  Similarity=0.348  Sum_probs=146.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999 99999887 66678888888889999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+..... +.|+++|+||+|+.     .......+++.++++..+++++++||++|.|+++
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-----ADREVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            99999999999999999999988754 44557999999962     1233446788899999999999999999999999


Q ss_pred             HHHHHHHHHhCCc
Q 023335          255 IFKFIMAKLFNLP  267 (283)
Q Consensus       255 lf~~l~~~i~~~~  267 (283)
                      +|+++.+.+.+..
T Consensus       163 l~~~l~~~~~~~~  175 (186)
T 2bme_A          163 AFVQCARKILNKI  175 (186)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=4.2e-31  Score=215.78  Aligned_cols=168  Identities=24%  Similarity=0.347  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      +..+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+++|||+|++.+..++..+++++|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            45799999999999999999 99998887 4445665444 566778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC----------cccchHHHHHHHHHHcCC-cEEE
Q 023335          176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD----------LQWTIATQARAYAKAMKA-TLFF  243 (283)
Q Consensus       176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~----------~~~~~~~~~~~~~~~~~~-~~~e  243 (283)
                      +|||++++.+|+++. .|+..+....++.|+++|+||+|+.   ...          .+.+..+++..+++.+++ ++++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  158 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  158 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH---TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc---ccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            999999999999997 7999999887777778999999972   211          123346788889999997 8999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCccc
Q 023335          244 SSATHNINVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~~~~  269 (283)
                      +||++|.|++++|+++.+.+.+.++.
T Consensus       159 ~Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (186)
T 1mh1_A          159 CSALTQRGLKTVFDEAIRAVLCPPPV  184 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSCCCC-
T ss_pred             ecCCCccCHHHHHHHHHHHHhccccc
Confidence            99999999999999999999887654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=1.7e-31  Score=223.33  Aligned_cols=167  Identities=25%  Similarity=0.326  Sum_probs=141.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.+|.+.++ .+.+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            45799999999999999999 99999988 4556777665 456778888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCC-------CCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023335          176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRL-------PPDLQWTIATQARAYAKAMK-ATLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l-------~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa  246 (283)
                      +|||++++++|+++ ..|+..+..+.++.|++|||||+|+....       ....+.+..++++++++.++ +.|+++||
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  184 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  184 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence            99999999999999 79999999887777778999999972110       00012344778899999988 68999999


Q ss_pred             C-CCcCHHHHHHHHHHHHhC
Q 023335          247 T-HNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       247 ~-~~~~v~~lf~~l~~~i~~  265 (283)
                      + ++.||+++|+.|++.+++
T Consensus       185 k~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          185 LQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhh
Confidence            9 689999999999998864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.8e-31  Score=219.13  Aligned_cols=166  Identities=25%  Similarity=0.432  Sum_probs=144.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45899999999999999999 99999987 66678898888888888888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+..... +.|+++|+||+|+.     ..+.+..++++++++.++++++++||++|.||++
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS-----DIREVPLKDAKEYAESIGAIVVETSAKNAINIEE  175 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            99999999999999999999988865 44557999999962     2233447889999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcc
Q 023335          255 IFKFIMAKLFNLPW  268 (283)
Q Consensus       255 lf~~l~~~i~~~~~  268 (283)
                      +|++|.+.+.+.++
T Consensus       176 l~~~l~~~i~~~~~  189 (192)
T 2fg5_A          176 LFQGISRQIPPLDP  189 (192)
T ss_dssp             HHHHHHHTCC----
T ss_pred             HHHHHHHHHHhhCC
Confidence            99999998866543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=221.60  Aligned_cols=166  Identities=23%  Similarity=0.351  Sum_probs=137.6

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            345799999999999999999 99999887 6667888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |+|||++++++|+.+..|+..+..... +.|++||+||+|+.     ....+..+++.++++..+++++++||++|.||+
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~  176 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-----PEREVTFLEASRFAQENELMFLETSALTGENVE  176 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999988754 44557999999962     222344678888999999999999999999999


Q ss_pred             HHHHHHHHHHhCCc
Q 023335          254 KIFKFIMAKLFNLP  267 (283)
Q Consensus       254 ~lf~~l~~~i~~~~  267 (283)
                      ++|++|.+.+.+..
T Consensus       177 ~l~~~l~~~i~~~~  190 (200)
T 2o52_A          177 EAFLKCARTILNKI  190 (200)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.97  E-value=2.2e-31  Score=221.31  Aligned_cols=167  Identities=18%  Similarity=0.165  Sum_probs=137.6

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+|+|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            345899999999999999999 99999988 4445777666 66677778889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      |+|||++++++|+.+..|+..+....  .+.|++||+||+|+.     ....+..+++..+++.++++++++||++|.||
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v  174 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-----PEREVQAVEGKKLAESWGATFMESSARENQLT  174 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc-----cccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence            99999999999999999999998763  345668999999972     22344578889999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCccc
Q 023335          253 NKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~~~  269 (283)
                      +++|++|.+.+.+....
T Consensus       175 ~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          175 QGIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999999876543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=3.8e-31  Score=221.44  Aligned_cols=168  Identities=22%  Similarity=0.364  Sum_probs=140.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            45799999999999999999 99999887 4455776554 566778888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-------cchHHHHHHHHHHcCC-cEEEEcC
Q 023335          176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-------WTIATQARAYAKAMKA-TLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-------~~~~~~~~~~~~~~~~-~~~e~Sa  246 (283)
                      +|||++++++|+++. .|+..+..+.++.|++||+||+||.    ....       .+..+++.++++.+++ +++++||
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR----DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh----hCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999997 8999999887777778999999962    1111       1247788899999996 8999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCcccc
Q 023335          247 THNINVNKIFKFIMAKLFNLPWTV  270 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i~~~~~~~  270 (283)
                      ++|.||+++|++|++.+.+.....
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC----
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhc
Confidence            999999999999999998876443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-31  Score=221.94  Aligned_cols=168  Identities=25%  Similarity=0.401  Sum_probs=140.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.+|.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45799999999999999999 99999988 56678888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++.+|+.+..|+.++..... +.|++||+||+||.     ..+.+..+++..+++.++++++++||++|.||++
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-----HLRAVPTEESKTFAQENQLLFTETSALNSENVDK  165 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988754 44557999999972     1223446788899999999999999999999999


Q ss_pred             HHHHHHHHHhCCcccc
Q 023335          255 IFKFIMAKLFNLPWTV  270 (283)
Q Consensus       255 lf~~l~~~i~~~~~~~  270 (283)
                      +|++|.+.+.+.....
T Consensus       166 l~~~l~~~i~~~~~~~  181 (223)
T 3cpj_B          166 AFEELINTIYQKVSKH  181 (223)
T ss_dssp             HHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999998766433

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=4.1e-31  Score=214.31  Aligned_cols=165  Identities=22%  Similarity=0.428  Sum_probs=143.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      ..+..+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus        10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            3456799999999999999999 99998888 566788888888899999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          174 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      +|+|||++++.+++.+..|+..+..... +.|+++|+||+|+.     .......+++..+++..+++++++||++|.|+
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  164 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-----DKRQVSTEEGERKAKELNVMFIETSAKAGYNV  164 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            9999999999999999999999987754 44557999999962     12334467888889999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 023335          253 NKIFKFIMAKLFN  265 (283)
Q Consensus       253 ~~lf~~l~~~i~~  265 (283)
                      +++|++|.+.+.+
T Consensus       165 ~~l~~~l~~~~~~  177 (179)
T 2y8e_A          165 KQLFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=4.6e-31  Score=211.81  Aligned_cols=160  Identities=18%  Similarity=0.245  Sum_probs=117.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      .+||+++|++|||||||+ ++.+..+....++.+..+ ...+.+++..+.+.+||++|++.+..+...+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            589999999999999999 998777665555555554 467788999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |++++++|+.+..|+..+....  .+.|.++|+||+|+.     .......+++..++..++++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  155 (166)
T 3q72_A           81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-----RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF  155 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC-----SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc-----cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Confidence            9999999999999999998763  456668999999972     223445788889999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      ++|.+.+.+
T Consensus       156 ~~l~~~~~~  164 (166)
T 3q72_A          156 EGVVRQIRL  164 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.97  E-value=1e-30  Score=217.24  Aligned_cols=163  Identities=25%  Similarity=0.455  Sum_probs=144.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   86 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL   86 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence            5799999999999999999 99999987 566788888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||++++++|+.+..|+..+..+.. +.|++||+||+|+.     ..+....++++++++.++++++++||++|.||+++
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-----DERVVSSERGRQLADHLGFEFFEASAKDNINVKQT  161 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT-----TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence            9999999999999999999988764 45557999999972     12334477888999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |++|.+.+.++
T Consensus       162 ~~~l~~~i~~~  172 (203)
T 1zbd_A          162 FERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=7.5e-31  Score=217.70  Aligned_cols=169  Identities=22%  Similarity=0.285  Sum_probs=136.7

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            445799999999999999999 99999887 4445666544 56778899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335          175 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSS  245 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~S  245 (283)
                      |+|||++++++|+++. .|+..+..+.++.|++||+||+|+.....       .....+..+++..+++.+++ +++++|
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  175 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS  175 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEe
Confidence            9999999999999997 79999999887777789999999721100       00133447788999999998 899999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCC
Q 023335          246 ATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~~  266 (283)
                      |++|.||+++|++|++.+.+.
T Consensus       176 a~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          176 ALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=4.6e-31  Score=217.06  Aligned_cols=161  Identities=25%  Similarity=0.433  Sum_probs=140.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-cchhhhcccCcEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAIL  175 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~ad~ii  175 (283)
                      ..+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+. .++..+++++|++|
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii   98 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   98 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence            4799999999999999999 99999888 566788888888899999999999999999999988 88899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC---c
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN---I  250 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~---~  250 (283)
                      +|||+++..+|+.+..|+.++....  .+.|++||+||+|+.     ..+.+..++++++++.++++++++||++|   .
T Consensus        99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  173 (189)
T 1z06_A           99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-----SAIQVPTDLAQKFADTHSMPLFETSAKNPNDND  173 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----ccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence            9999999999999999999998874  455668999999962     22234477888999999999999999999   9


Q ss_pred             CHHHHHHHHHHHHh
Q 023335          251 NVNKIFKFIMAKLF  264 (283)
Q Consensus       251 ~v~~lf~~l~~~i~  264 (283)
                      ||+++|++|.+.+.
T Consensus       174 ~i~~l~~~l~~~i~  187 (189)
T 1z06_A          174 HVEAIFMTLAHKLK  187 (189)
T ss_dssp             CHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=3.3e-31  Score=219.93  Aligned_cols=168  Identities=23%  Similarity=0.308  Sum_probs=136.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            45799999999999999999 99999887 56668888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCC-CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLP-PDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      +|||+++.++++.+..|+..+..... +.|++||+||+||..... ...+.+..++++++++.++++++++||++|.||+
T Consensus       106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~  185 (199)
T 2p5s_A          106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV  185 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence            99999999999999999999988754 455689999999621000 0123344778889999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023335          254 KIFKFIMAKLFN  265 (283)
Q Consensus       254 ~lf~~l~~~i~~  265 (283)
                      ++|++|++.+.+
T Consensus       186 el~~~l~~~i~~  197 (199)
T 2p5s_A          186 EAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=1.1e-30  Score=209.50  Aligned_cols=160  Identities=20%  Similarity=0.254  Sum_probs=137.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.+. .+.+|.+..+ .+.+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999 99998887 4555666554 4667788889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN  253 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~  253 (283)
                      |||++++++|+.+..|+..+...  ..+.|+++|+||+|+.     ..+....+++.++++.+ +++++++||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-----DERVVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-----ccccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence            99999999999999999998876  3356668999999972     22334477888899888 7899999999999999


Q ss_pred             HHHHHHHHHHh
Q 023335          254 KIFKFIMAKLF  264 (283)
Q Consensus       254 ~lf~~l~~~i~  264 (283)
                      ++|++|.+.+.
T Consensus       156 ~l~~~l~~~i~  166 (167)
T 1c1y_A          156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=9e-31  Score=209.74  Aligned_cols=161  Identities=17%  Similarity=0.227  Sum_probs=136.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.+.. ..+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            4799999999999999999 999998874 444555544 4566788989999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||++++++|+.+..|+..+.....  +.|+++|+||+|+.     .......+++..+++.++++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-----ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            9999999999999999999988754  55668999999962     1223447788899999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|+++.+.+.+
T Consensus       157 l~~~l~~~i~~  167 (168)
T 1u8z_A          157 VFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=1.8e-30  Score=212.57  Aligned_cols=166  Identities=14%  Similarity=0.202  Sum_probs=140.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ +++++.+...++.+..+.....+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   82 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   82 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            5799999999999999999 999998885554333455567778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      ||+++.++|+.+..|+..+....  .+.|+++|+||+|+.      ......+++..+++.++++++++||++|.|++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A           83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP------SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA  156 (189)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS------SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999998864  355668999999972      2344578889999999999999999999999999


Q ss_pred             HHHHHHHHhCCcccc
Q 023335          256 FKFIMAKLFNLPWTV  270 (283)
Q Consensus       256 f~~l~~~i~~~~~~~  270 (283)
                      |++|.+.+.+.....
T Consensus       157 ~~~l~~~~~~~~~~~  171 (189)
T 4dsu_A          157 FYTLVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999987665443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=5.5e-31  Score=215.03  Aligned_cols=165  Identities=17%  Similarity=0.231  Sum_probs=140.7

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      .+..+||+|+|++|||||||+ +++++.+... .+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            345799999999999999999 9999888744 44555544 45677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      ++|||+++.++|+.+..|+.++.....  +.|+++|+||+|+.     .......++++++++.++++++++||++|.||
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  168 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRAEQWNVNYVETSAKTRANV  168 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence            999999999999999999999988754  56668999999962     12234477888999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCc
Q 023335          253 NKIFKFIMAKLFNLP  267 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~  267 (283)
                      +++|++|.+.+.+..
T Consensus       169 ~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          169 DKVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987644

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=7.2e-31  Score=215.11  Aligned_cols=167  Identities=25%  Similarity=0.326  Sum_probs=141.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. .+.+|.+.++ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            35799999999999999999 99999887 4556776665 456778888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCC-------CCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023335          176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRL-------PPDLQWTIATQARAYAKAMK-ATLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l-------~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa  246 (283)
                      +|||++++++|+++ ..|+..+..+.++.|.+|||||+|+....       ....+.+..+++.++++.++ ++|+++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999999 78999999887777778999999972110       00012344788999999988 68999999


Q ss_pred             C-CCcCHHHHHHHHHHHHhC
Q 023335          247 T-HNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       247 ~-~~~~v~~lf~~l~~~i~~  265 (283)
                      + ++.||+++|+.+++.+++
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=1.7e-30  Score=210.96  Aligned_cols=164  Identities=16%  Similarity=0.218  Sum_probs=140.6

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+++|++|||||||+ +++++.+. ...+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            345799999999999999999 99999888 44457776655 7778899899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhH-C-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~-~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      ++|||+++.++++.+..|+.++... . .+.|+++|+||+|+.     ..+....+++..++...+++++++||++|.|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  159 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-----SQRQVPRSEASAFGASHHVAYFEASAKLRLNV  159 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence            9999999999999999999998544 3 355668999999972     22334477888899999999999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 023335          253 NKIFKFIMAKLFNL  266 (283)
Q Consensus       253 ~~lf~~l~~~i~~~  266 (283)
                      +++|++|.+.+.+.
T Consensus       160 ~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          160 DEAFEQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=2.7e-31  Score=223.97  Aligned_cols=168  Identities=24%  Similarity=0.340  Sum_probs=147.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335           95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus        95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      ......+||+|+|++|||||||+ +++.+.+. ...++.|.++....+.+++..+.+.+|||+|++.+..++..+++++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            34456899999999999999999 98888877 55668888888888999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      ++|+|||+++..+|+.+..|+..+....++.|.+||+||+||..    .  . ...+...+++..+++++++||++|.||
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----~--~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD----R--K-VKAKSIVFHRKKNLQYYDISAKSNYNF  162 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS----C--S-SCGGGCCHHHHHTCEEEECBGGGTBTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc----c--c-ccHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999887778899999999731    1  1 122556678888999999999999999


Q ss_pred             HHHHHHHHHHHhCCccc
Q 023335          253 NKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       253 ~~lf~~l~~~i~~~~~~  269 (283)
                      +++|++|.+.+...+..
T Consensus       163 ~~l~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          163 EKPFLWLARKLIGDPNL  179 (221)
T ss_dssp             THHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999999887753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=1.2e-30  Score=215.89  Aligned_cols=163  Identities=19%  Similarity=0.260  Sum_probs=134.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCc--cccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC-cccchhhhcccCcEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI  174 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad~i  174 (283)
                      ..+||+++|++|||||||+ +|++..  +...++++|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|++
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~   84 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   84 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence            4699999999999999999 999643  445667788888888899999999999999999877 566778889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      ++|||+++++||+.+..|+..+....  .+.|+|+||||+||.     ..+.+..+++..++..++++|+++||++|.||
T Consensus        85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-----~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v  159 (192)
T 2cjw_A           85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-----RXREVSVSEGRAXAVVFDXKFIETSAAVQHNV  159 (192)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-----ccccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence            99999999999999999999887753  345668999999962     12334467788888899999999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 023335          253 NKIFKFIMAKLFNL  266 (283)
Q Consensus       253 ~~lf~~l~~~i~~~  266 (283)
                      +++|+++++.+...
T Consensus       160 ~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          160 KELFEGIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=216.10  Aligned_cols=164  Identities=17%  Similarity=0.234  Sum_probs=141.8

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+|+|++|||||||+ +++++.+... .+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            345799999999999999999 9999988744 44655544 56677889899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      ++|||+++.++|+.+..|+..+.....  +.|++||+||+|+.     ....+..+++.++++.++++++++||++|.||
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  164 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRAEQWNVNYVETSAKTRANV  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc-----ccccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence            999999999999999999999988754  56668999999972     12234477888999999999999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 023335          253 NKIFKFIMAKLFNL  266 (283)
Q Consensus       253 ~~lf~~l~~~i~~~  266 (283)
                      +++|++|++.+.+.
T Consensus       165 ~~l~~~l~~~i~~~  178 (206)
T 2bov_A          165 DKVFFDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=1.2e-30  Score=214.16  Aligned_cols=165  Identities=22%  Similarity=0.371  Sum_probs=144.0

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeee-EEEEEECCe---------EEEEEEEeCCCCCCcccch
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHV  164 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~-~~~~~~~~~---------~~~l~i~Dt~G~~~~~~~~  164 (283)
                      ....+||+|+|++|||||||+ +++++.+. ...+|.+.++. .+.+.+++.         .+.+.+|||+|++.+..++
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            456799999999999999999 99998887 56678888887 667777766         7899999999999999999


Q ss_pred             hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335          165 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF  242 (283)
Q Consensus       165 ~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
                      ..+++++|++|+|||++++.+++.+..|+..+..+.  .+.|+++|+||+|+.     .......++++++++.++++++
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE-----DQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999999998876  356668999999962     1223447788899999999999


Q ss_pred             EEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          243 FSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       243 e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ++||++|.|++++|++|.+.+.+.
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=1.8e-31  Score=224.12  Aligned_cols=165  Identities=26%  Similarity=0.413  Sum_probs=143.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCe----------EEEEEEEeCCCCCCcccchh
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP  165 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~----------~~~l~i~Dt~G~~~~~~~~~  165 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++.          .+.+.+|||+|++.|..++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            45799999999999999999 99999887 55668888888888888776          78999999999999999999


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  243 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e  243 (283)
                      .+++++|++|+|||+++.++++.+..|+..+....  .+.|++||+||+|+.     ....+..++++++++.+++++++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~  177 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-----DQREVNERQARELADKYGIPYFE  177 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCCEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-----cccccCHHHHHHHHHHCCCcEEE
Confidence            99999999999999999999999999999887654  355668999999962     22234478889999999999999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          244 SSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +||++|.||+++|++|.+.+.+..
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999987643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=6.3e-31  Score=219.39  Aligned_cols=164  Identities=23%  Similarity=0.320  Sum_probs=136.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      .....+||+++|++|||||||+ +++++.+.. +.+|++ +.....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            3456799999999999999999 999998884 444554 4556677888999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCc----------ccchHHHHHHHHHHcCC-cE
Q 023335          174 ILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------QWTIATQARAYAKAMKA-TL  241 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~----------~~~~~~~~~~~~~~~~~-~~  241 (283)
                      +|+|||++++++|+++. .|+..+....++.|.+||+||+||.   ....          .....+++..+++.+++ ++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH---TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc---cchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence            99999999999999997 8999999988777779999999972   1110          11346788899999987 59


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHH
Q 023335          242 FFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       242 ~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +++||++|.||+++|++|.+.+
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=8e-31  Score=218.20  Aligned_cols=165  Identities=25%  Similarity=0.366  Sum_probs=144.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            35799999999999999999 99999887 56668888988888889998999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCC
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHN  249 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~  249 (283)
                      +|||++++.+|+.+..|+.++....     .+.|+++|+||+|+.      ......+++..+++ ..+++++++||++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  159 (207)
T 1vg8_A           86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE------NRQVATKRAQAWCYSKNNIPYFETSAKEA  159 (207)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS------CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc------ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence            9999999999999999999988764     345668999999972      22344677888887 66889999999999


Q ss_pred             cCHHHHHHHHHHHHhCCcc
Q 023335          250 INVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~~~~  268 (283)
                      .|++++|++|.+.+.+.+.
T Consensus       160 ~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          160 INVEQAFQTIARNALKQET  178 (207)
T ss_dssp             BSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcc
Confidence            9999999999999887653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=4.4e-30  Score=213.56  Aligned_cols=164  Identities=21%  Similarity=0.334  Sum_probs=141.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ ++.++.+. .+.+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            35799999999999999999 99999888 55567776664 45778898999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc----------ccchHHHHHHHHHHcCC-cEEE
Q 023335          176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------QWTIATQARAYAKAMKA-TLFF  243 (283)
Q Consensus       176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~----------~~~~~~~~~~~~~~~~~-~~~e  243 (283)
                      +|||++++++|+.+ ..|+..+....++.|+++|+||+|+.   ....          +.+..+++.++++.+++ ++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR---QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT---TCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh---cCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            99999999999999 68999999887777789999999973   2110          22446788899999998 8999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhC
Q 023335          244 SSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      +||++|.||+++|++|.+.+++
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=218.74  Aligned_cols=167  Identities=24%  Similarity=0.328  Sum_probs=123.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. .+.+|++.. ....+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            45799999999999999999 99999887 444455544 3566788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC----------cccchHHHHHHHHHHcCC-cEEE
Q 023335          176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD----------LQWTIATQARAYAKAMKA-TLFF  243 (283)
Q Consensus       176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~----------~~~~~~~~~~~~~~~~~~-~~~e  243 (283)
                      +|||++++++|+.+. .|+..+....++.|++||+||+|+.   ...          .+.+..+++.++++.+++ ++++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  187 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR---KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE  187 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG---SCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh---ccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence            999999999999997 7999999888777889999999972   211          013346788999999998 8999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCcc
Q 023335          244 SSATHNINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~~~  268 (283)
                      +||++|.||+++|++|.+.+.+.++
T Consensus       188 ~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          188 CSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999986643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=2.1e-30  Score=207.41  Aligned_cols=160  Identities=17%  Similarity=0.258  Sum_probs=137.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.+...+ ++++ +.....+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            4689999999999999999 99999887444 4554 3446778889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||++++++++.+..|+.++....  .+.|+++|+||+|+.     .......++++++++.++++++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-----SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc-----ccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHH
Confidence            999999999999999999988764  355668999999962     2233447788889999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023335          255 IFKFIMAKLF  264 (283)
Q Consensus       255 lf~~l~~~i~  264 (283)
                      +|++|.+.+.
T Consensus       156 l~~~l~~~~~  165 (167)
T 1kao_A          156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998774

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.2e-32  Score=225.36  Aligned_cols=165  Identities=21%  Similarity=0.390  Sum_probs=134.9

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            346799999999999999999 99998887 5566888888888999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |+|||+++.++|+.+..|+..+...... .|++||+||+|+.     ..+.+..++++.+++.++++++++||++|.||+
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~  184 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----TKKVVDYTTAKEFADSLGIPFLETSAKNATNVE  184 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-------CCCCSCC-CHHHHTTTCCBCCCCC---HHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC-----ccccCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            9999999999999999999999887654 4457999999972     112233456778889999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 023335          254 KIFKFIMAKLFNL  266 (283)
Q Consensus       254 ~lf~~l~~~i~~~  266 (283)
                      ++|++|.+.+.++
T Consensus       185 ~l~~~l~~~l~~~  197 (199)
T 3l0i_B          185 QSFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998877543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.9e-30  Score=214.86  Aligned_cols=167  Identities=21%  Similarity=0.329  Sum_probs=139.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      +..+||+++|++|||||||+ +++++.+. .+.+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45799999999999999999 99999888 44456666654 34678898999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc----------ccchHHHHHHHHHHcCC-cEEE
Q 023335          176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------QWTIATQARAYAKAMKA-TLFF  243 (283)
Q Consensus       176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~----------~~~~~~~~~~~~~~~~~-~~~e  243 (283)
                      +|||++++++|+.+ ..|+..+....++.|+++|+||+|+.   ....          +.+..+++..+++.+++ .+++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR---SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE  178 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG---GCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh---ccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence            99999999999999 68999999887777889999999972   2110          22346778889999988 8999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCcc
Q 023335          244 SSATHNINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~~~  268 (283)
                      +||++|.||+++|++|.+.+++...
T Consensus       179 ~SA~~g~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          179 CSAKTKEGVREVFETATRAALQKRY  203 (207)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999987643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=5e-30  Score=211.95  Aligned_cols=160  Identities=23%  Similarity=0.417  Sum_probs=140.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE------------------------------
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------  146 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~------------------------------  146 (283)
                      ..+||+|+|++|||||||+ +++++.+. ...+|++.++....+.+++..                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            4799999999999999999 99999888 566688888888888887765                              


Q ss_pred             -------EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          147 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       147 -------~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                             +.+.+|||+|++.+..++..+++.+|++|+|||++++.+++.+..|+.++..... .|+++|+||+|+     
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~-----  159 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDK-----  159 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTC-----
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCc-----
Confidence                   8899999999999999999999999999999999999999999999999988765 566899999994     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                       .......++++++++.++++++++||++|.|++++|++|.+.+.+
T Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence             223345788899999999999999999999999999999998864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=5.3e-30  Score=210.56  Aligned_cols=162  Identities=15%  Similarity=0.222  Sum_probs=129.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      +..+||+++|.+|||||||+ +++++.+...+ +|++.. ....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            45799999999999999999 99998887444 455544 3567778898999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      +|||+++..+++++..|+..+.....  +.|.++|+||+|+.   .   .....++++++++.++++++++||++|.|++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  171 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP---T---RTVDTKQAHELAKSYGIPFIETSAKTRQGVE  171 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS---C---CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC---c---ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999999987743  55668999999972   1   2344788889999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 023335          254 KIFKFIMAKLFNL  266 (283)
Q Consensus       254 ~lf~~l~~~i~~~  266 (283)
                      ++|++|.+.+.+.
T Consensus       172 ~l~~~l~~~~~~~  184 (190)
T 3con_A          172 DAFYTLVREIRQY  184 (190)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=2.2e-30  Score=210.55  Aligned_cols=165  Identities=24%  Similarity=0.389  Sum_probs=129.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ...+||+++|++|||||||+ +++++.+. ...++.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   85 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence            34799999999999999999 99999887 556688888888888877 5678899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCC
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATH  248 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~  248 (283)
                      |+|||+++..+++.+..|+.++....     .+.|+++|+||+|+    ......+..+++.++++ ..+++++++||++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl----~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  161 (182)
T 1ky3_A           86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA----EESKKIVSEKSAQELAKSLGDIPLFLTSAKN  161 (182)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS----CGGGCCSCHHHHHHHHHHTTSCCEEEEBTTT
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc----ccccccCCHHHHHHHHHhcCCCeEEEEecCC
Confidence            99999999999999999999988764     45566899999996    22223344778888888 4578999999999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023335          249 NINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~  266 (283)
                      |.||+++|++|.+.+.++
T Consensus       162 ~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          162 AINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999988653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=1.2e-29  Score=202.51  Aligned_cols=160  Identities=15%  Similarity=0.218  Sum_probs=137.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ ++.++.+... .++++.. ....+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            3689999999999999999 9999888744 4455443 45677788889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++.++++.+..|+..+.....  +.|+++|+||+|+.   +   .....+++.++++.++++++++||++|.|+++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  154 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA---A---RTVESRQAQDLARSYGIPYIETSAKTRQGVED  154 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS---C---CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh---h---cccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            9999999999999999999988754  56668999999972   1   23447788899999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|++|.+.+.+
T Consensus       155 l~~~l~~~~~~  165 (166)
T 2ce2_X          155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=6e-30  Score=213.84  Aligned_cols=163  Identities=25%  Similarity=0.437  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            34699999999999999999 99998887 66678888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++..+|+.+..|+..+...... .|+++|+||+|+      .......+++.++++.++++++++||++|.||++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  171 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE  171 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC------SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999887654 455799999996      1233446778889999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|++|.+.+.+.
T Consensus       172 l~~~l~~~~~~~  183 (213)
T 3cph_A          172 IFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=7.9e-31  Score=213.56  Aligned_cols=163  Identities=22%  Similarity=0.359  Sum_probs=126.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. .+.+|++..+. ..+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            34799999999999999999 99998887 44556665443 34556777888999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc---------cchHHHHHHHHHHcCC-cEEEE
Q 023335          176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ---------WTIATQARAYAKAMKA-TLFFS  244 (283)
Q Consensus       176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~---------~~~~~~~~~~~~~~~~-~~~e~  244 (283)
                      +|||++++++|+++. .|+..+..+.++.|+++|+||+|+.    +...         .+..+++.++++.+++ +++++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR----DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC  160 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh----cCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999997 7999999887777778999999962    1111         1246788899999997 89999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhC
Q 023335          245 SATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ||++|.|++++|++|.+.+++
T Consensus       161 Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          161 SSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=8.7e-31  Score=217.79  Aligned_cols=166  Identities=14%  Similarity=0.260  Sum_probs=110.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcC--ccc-cccccceeeeeEEEEEECCe--EEEEEEEeCCCCCCcccchhhhcccC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA  171 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~--~~~-~~~~t~~~~~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~a  171 (283)
                      ...+||+|+|++|||||||+ +++++  .+. .+.+|++.++....+.+++.  .+.+.+|||+|++.+..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45799999999999999999 99998  777 55568888888888989887  89999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhHCC----CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          172 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       172 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      |++|+|||++++++|+.+..|+..+..+..    ..|++||+||+|+.    .....+..+++.++++.++++++++||+
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  173 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP----PQRHQVRLDMAQDWATTNTLDFFDVSAN  173 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-----------CCCHHHHHHHHHHTTCEEEECCC-
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc----hhhccCCHHHHHHHHHHcCCEEEEeccC
Confidence            999999999999999999999999998865    45558999999972    1023344788999999999999999999


Q ss_pred             C-CcCHHHHHHHHHHHHhCCc
Q 023335          248 H-NINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       248 ~-~~~v~~lf~~l~~~i~~~~  267 (283)
                      + |.|++++|++|.+.+.+..
T Consensus       174 ~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          174 PPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             ------CHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHH
Confidence            9 9999999999999887543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=6.1e-30  Score=211.65  Aligned_cols=163  Identities=13%  Similarity=0.212  Sum_probs=138.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+|+|++|||||||+ +++++.+. .+.+|.+.++ ...+.+++..+.+.+|||+|++. ..++..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            345799999999999999999 99999888 4445666554 56677889999999999999988 77888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc-C
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI-N  251 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-~  251 (283)
                      |+|||++++++|+.+..|+..+....  .+.|++||+||+|+.     ..+.+..+++.++++.++++++++||++|. |
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g  177 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-----HSRQVSTEEGEKLATELACAFYECSACTGEGN  177 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence            99999999999999999999988763  356668999999962     123345788889999999999999999999 9


Q ss_pred             HHHHHHHHHHHHhCC
Q 023335          252 VNKIFKFIMAKLFNL  266 (283)
Q Consensus       252 v~~lf~~l~~~i~~~  266 (283)
                      |+++|++|++.+.++
T Consensus       178 i~~l~~~l~~~i~~~  192 (196)
T 2atv_A          178 ITEIFYELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=9.8e-31  Score=215.45  Aligned_cols=165  Identities=15%  Similarity=0.102  Sum_probs=136.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHhHhhhcCccc-cc-----------cccceeeeeEEEE-EECCeEEEEEEEeCCCCCCccc
Q 023335           96 SDLVSLKISLLGDCQIGKTSFVKYVGNEQE-RS-----------LQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSFD  162 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi~~~~~~~~-~~-----------~~t~~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~  162 (283)
                      .....+||+|+|++|||||||++++.+.+. .+           .+|.+.++....+ .+++..+.+++|||+|++.|..
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            445689999999999999999944444444 32           2466667666555 6778889999999999999999


Q ss_pred             chhhhcccCcEEEEEEECC------ChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH
Q 023335          163 HVPIACKDAVAILFMFDLT------SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA  236 (283)
Q Consensus       163 ~~~~~~~~ad~iilv~D~~------~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~  236 (283)
                      ++..+++++|++|+|||++      +.++|+.+..|+.+++....+.|.+||+||+||.    .   ....++++++++.
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~----~---~~~~~~~~~~~~~  162 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP----D---ALPVEMVRAVVDP  162 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST----T---CCCHHHHHHHHCT
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc----c---ccCHHHHHHHHHh
Confidence            9999999999999999999      6678888889999886555566778999999972    1   2457888999999


Q ss_pred             cCC-cEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          237 MKA-TLFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       237 ~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +++ +++++||++|.||+++|++|.+.+.+..
T Consensus       163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            999 9999999999999999999999887643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=8.2e-30  Score=214.18  Aligned_cols=169  Identities=22%  Similarity=0.261  Sum_probs=140.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      .....+||+|+|++|||||||+ +++++.+. ...+|.+.......+... +..+.+.+|||+|++.+..+...+++++|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            3445899999999999999999 99998887 445577777666655554 44588999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN  251 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  251 (283)
                      ++|+|||+++..+++++..|+..+...... .|.++|+||+|+.     .......+++..+++..+++++++||++|.|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  161 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK-----NRQKISKKLVMEVLKGKNYEYFEISAKTAHN  161 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC---------CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            999999999999999999999999887654 5558999999972     2234457778888999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCccc
Q 023335          252 VNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~~~  269 (283)
                      ++++|++|.+.+.+....
T Consensus       162 v~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          162 FGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             TTHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHhccccc
Confidence            999999999999886643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-29  Score=203.78  Aligned_cols=161  Identities=18%  Similarity=0.278  Sum_probs=136.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +++++.+. ...++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            689999999999999999 99998887 4555666554 35567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC---CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ||++++++++.+..|+..+....   ++.|+++|+||+|+.     ..+....+++..+++.++++++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-----PSREVQSSEAEALARTWKCAFMETSAKLNHNVKE  156 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc-----cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHH
Confidence            99999999999999998887763   356778999999962     1223346778888999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|++|.+.+...
T Consensus       157 l~~~l~~~~~~~  168 (172)
T 2erx_A          157 LFQELLNLEKRR  168 (172)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHhhh
Confidence            999999876543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=3.8e-30  Score=213.11  Aligned_cols=163  Identities=20%  Similarity=0.218  Sum_probs=125.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEE--EEC-CeEEEEEEEeCCCCCCcccch---hhhc
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTL--MVQ-GARIAFSIWDVGGDSRSFDHV---PIAC  168 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~--~~~-~~~~~l~i~Dt~G~~~~~~~~---~~~~  168 (283)
                      .....+||+++|++|||||||+ ++.+.....  ++.+.++..+.+  .+. +..+.+++|||+|+++|..+.   ..++
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF   93 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence            3345899999999999999999 776643223  344444433333  333 567889999999999998877   8999


Q ss_pred             ccCcEEEEEEECCCh--hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC-----cccchHHHHHHHHH----Hc
Q 023335          169 KDAVAILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-----LQWTIATQARAYAK----AM  237 (283)
Q Consensus       169 ~~ad~iilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-----~~~~~~~~~~~~~~----~~  237 (283)
                      +++|++|+|||++++  ++++.+..|+.++....++.|++|||||+||   .+++     .+.+..++...+++    .+
T Consensus        94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG---LSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc---CchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            999999999999997  7778888888888777777777899999997   2211     12333566778888    67


Q ss_pred             CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          238 KATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       238 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      +++|+++||++ .||+++|+.+++.++
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~li  196 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKLI  196 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHhC
Confidence            88999999999 999999999998763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2e-29  Score=208.27  Aligned_cols=163  Identities=18%  Similarity=0.248  Sum_probs=138.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.+. .+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            4689999999999999999 99998887 4455666444 3556778889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC---CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |||++++++|+.+..|+..+....   ++.|+++|+||+|+.   .   ..+..+++..+++.++++++++||++|.||+
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (199)
T 2gf0_A           86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET---Q---REVDTREAQAVAQEWKCAFMETSAKMNYNVK  159 (199)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS---S---CSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC---c---cccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence            999999999999998988877653   345668999999972   1   2344677888999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcc
Q 023335          254 KIFKFIMAKLFNLPW  268 (283)
Q Consensus       254 ~lf~~l~~~i~~~~~  268 (283)
                      ++|++|.+.+.+...
T Consensus       160 ~l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          160 ELFQELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHHHHCSSSCE
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999998876643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=8.9e-30  Score=208.83  Aligned_cols=164  Identities=16%  Similarity=0.341  Sum_probs=125.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC--ccc-cccccceeeeeEEEEEE---CCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV  172 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~--~~~-~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  172 (283)
                      ++||+|+|++|||||||+ ++++.  .+. .+.+|.|.++..+.+.+   ++..+.+.+|||+|+++|..+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999 99985  454 45668888887766554   345788999999999999999999999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc---hHHHHHHHHHHcCCc----EEEE
Q 023335          173 AILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT---IATQARAYAKAMKAT----LFFS  244 (283)
Q Consensus       173 ~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~---~~~~~~~~~~~~~~~----~~e~  244 (283)
                      ++++|||++++ .+|+.+..|+.++....++.|++|||||+|+    .+. ...   ..+....+++.++++    ++++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDV----SDE-KQRKACMSKITKELLNKRGFPAIRDYHFV  156 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGG----CCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEEC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCc----ccc-hhhHHHHHHHHHHHHHhcCCcchhheEEE
Confidence            99999999997 5899999999999887766677899999996    221 111   134556777777887    9999


Q ss_pred             cCCCCc-CHHHHHHHHHHHHhCCcc
Q 023335          245 SATHNI-NVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       245 Sa~~~~-~v~~lf~~l~~~i~~~~~  268 (283)
                      ||++|. +++++++.|.+.+.+..+
T Consensus       157 Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          157 NATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             ecccCchhHHHHHHHHHHHHhcccc
Confidence            999996 999999999999887654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=4.8e-29  Score=205.97  Aligned_cols=162  Identities=15%  Similarity=0.204  Sum_probs=124.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcccc-c-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER-S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....||+|+|++|||||||+ +++++.+.. . .+|.+...  ..+.  +..+.+.+|||+|++.+..++..+++++|++
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            34789999999999999999 999999875 3 55777443  3333  3457799999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhHC---------CCCceEEEeecCCCCCCCCCCcccchHH-H-HHHHHHHcCCcEEE
Q 023335          175 LFMFDLTSRCTLNSIVGWYSEARKWN---------QTAIPILIGTKFDDFVRLPPDLQWTIAT-Q-ARAYAKAMKATLFF  243 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~~~~~~i~~~~---------~~~~~ilvgnK~DL~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~e  243 (283)
                      |+|||+++.++|+.+..|+..+....         .+.|.|||+||+||..   ........+ . ...+++..++++++
T Consensus        91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG---AKTAAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT---CCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC---CCCHHHHHHHhcchhhccCCeeEEEE
Confidence            99999999999999999998886641         2556689999999732   111111111 1 12222557789999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCC
Q 023335          244 SSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      +||++|.||+++|++|.+.+.+.
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             eeCCCccCHHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=6.4e-29  Score=200.03  Aligned_cols=161  Identities=18%  Similarity=0.238  Sum_probs=126.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ +++++.+....+|.+...  ..+.++  .+.+.+|||+|++.+..++..+++++|++++|
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   81 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   81 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            3689999999999999999 999998887777776543  455565  46789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ||++++++|+.+..|+..+....  .+.|+++|+||+|+..   ....... ......+++..+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ---AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC---CCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            99999999999999988876542  4556689999999722   1111111 1111222334567899999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|++|.+.+.++
T Consensus       159 l~~~l~~~i~~~  170 (171)
T 1upt_A          159 AMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhc
Confidence            999999988654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=6.3e-29  Score=203.89  Aligned_cols=160  Identities=15%  Similarity=0.167  Sum_probs=123.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ +++++.+....+|.+...  ..+.+++  +.+.+|||+|++++..++..+++++|++|+|
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4689999999999999999 999888876666777543  4556665  7789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~  250 (283)
                      ||++++++|+.+..|+.++...  ..+.|+++|+||+|+..    .   ...+++.+..     +..+++++++||++|.
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  163 (187)
T 1zj6_A           91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE----C---MTVAEISQFLKLTSIKDHQWHIQACCALTGE  163 (187)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT----C---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC----C---CCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence            9999999999999999998875  24566689999999721    1   1122333322     2346689999999999


Q ss_pred             CHHHHHHHHHHHHhCCccc
Q 023335          251 NVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~~~~  269 (283)
                      |++++|++|++.+...+..
T Consensus       164 gi~~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          164 GLCQGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             THHHHHHHHHHHHCC----
T ss_pred             CHHHHHHHHHHHHHHHhhh
Confidence            9999999999998776543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=3e-29  Score=200.83  Aligned_cols=158  Identities=18%  Similarity=0.194  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+++|++|||||||+ +++++.+..+.||.+..  ...+..+  .+.+.+|||+|++.+..++..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999 99998888767777743  3344444  4678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          180 LTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ++++++|+.+..|+..+...  ..+.|+++|+||+|+..   ....... .......++..+++++++||++|.|++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN---AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC---CCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            99999999999999888764  23556689999999722   1110111 111111122235679999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999988754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=201.01  Aligned_cols=156  Identities=15%  Similarity=0.171  Sum_probs=124.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCc-cc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ..+||+|+|++|||||||+ +++++. +. ...+|.+  +....+.+++  +.+.+|||+|++.+..++..+++++|++|
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            4699999999999999999 999988 44 4455666  3445666665  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcC
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa  246 (283)
                      +|||+++.++|+.+..|+..+....    .+.|+++|+||+|+..    .   ...+++.+++.     ..+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa  168 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD----A---VTSVKVSQLLCLENIKDKPWHICASDA  168 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT----C---CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc----C---CCHHHHHHHhChhhccCCceEEEEccC
Confidence            9999999999999999999887753    3556689999999721    1   12344444442     23578999999


Q ss_pred             CCCcCHHHHHHHHHHHHhC
Q 023335          247 THNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i~~  265 (283)
                      ++|.||+++|++|.+.+.+
T Consensus       169 ~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          169 IKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTTBTHHHHHHHHHHHC--
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999987743

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=3.5e-29  Score=204.53  Aligned_cols=153  Identities=15%  Similarity=0.199  Sum_probs=122.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ +++++.+....+|.+...  ..+.+++  +.+.+|||+|++++..++..+++++|++|+|
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   95 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   95 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            4699999999999999999 999998865566777554  4555665  6789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~  250 (283)
                      ||+++.++|+.+..|+..+...  ..+.|+++|+||+||..    .   ...+++.+..     +..+++++++||++|.
T Consensus        96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  168 (181)
T 2h17_A           96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE----C---MTVAEISQFLKLTSIKDHQWHIQACCALTGE  168 (181)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT----C---CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc----C---CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            9999999999999999888765  34566689999999722    1   1122222222     2345689999999999


Q ss_pred             CHHHHHHHHHHH
Q 023335          251 NVNKIFKFIMAK  262 (283)
Q Consensus       251 ~v~~lf~~l~~~  262 (283)
                      ||+++|++|.+.
T Consensus       169 gi~~l~~~l~~~  180 (181)
T 2h17_A          169 GLCQGLEWMMSR  180 (181)
T ss_dssp             THHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=1.6e-28  Score=203.97  Aligned_cols=154  Identities=15%  Similarity=0.162  Sum_probs=119.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ ++.++.+....+|.+.+.  ..+.+++  +.+.+|||+|++.+..++..+++++|++++|
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL   99 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence            4689999999999999999 999988876666776653  5667777  7789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-----------------cC
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-----------------MK  238 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-----------------~~  238 (283)
                      ||++++++|+++..|+.++.+.  ..+.|.++|+||+|+..       ....+++.+++..                 .+
T Consensus       100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1f6b_A          100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-------AISEERLREMFGLYGQTTGKGSVSLKELNARP  172 (198)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-------CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-------cCCHHHHHHHhCcccccccccccccccccCce
Confidence            9999999999999999988764  24566689999999721       2335566666542                 34


Q ss_pred             CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          239 ATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       239 ~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ++++++||++|+||+++|++|.+.+
T Consensus       173 ~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          173 LEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHhc
Confidence            5799999999999999999997643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=9.2e-29  Score=204.32  Aligned_cols=162  Identities=16%  Similarity=0.197  Sum_probs=120.0

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ....+||+|+|++|||||||+ +++++.+..+.||.+..  ...+..++  +.+.+|||+|++.+..++..+++++|++|
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            345799999999999999999 99999887666676633  34555544  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                      +|||++++++|+.+..|+..+....  .+.|++||+||+|+...   ...... ......+++..+++++++||++|.||
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            9999999999999999998887542  35566899999997221   110111 11111112223457999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 023335          253 NKIFKFIMAKLFN  265 (283)
Q Consensus       253 ~~lf~~l~~~i~~  265 (283)
                      +++|++|.+.+.+
T Consensus       179 ~~l~~~l~~~i~~  191 (192)
T 2b6h_A          179 YDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=2.9e-29  Score=206.35  Aligned_cols=157  Identities=16%  Similarity=0.226  Sum_probs=123.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +++++.+. ...+|.+.++.  .+...  .+.+.+|||+|++.+..++..+++++|++|+
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            4799999999999999999 99999887 56668777764  33333  4678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCc
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNI  250 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~  250 (283)
                      |||+++.++|+.+..|+..+...  ..+.|++||+||+|+..   ...   ..+....+    +...+++++++||++|.
T Consensus        97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  170 (188)
T 1zd9_A           97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG---ALD---EKELIEKMNLSAIQDREICCYSISCKEKD  170 (188)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc---CCC---HHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence            99999999999999999888764  24566689999999722   111   11111111    12235678999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023335          251 NVNKIFKFIMAKLFN  265 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~  265 (283)
                      ||+++|++|.+.+..
T Consensus       171 gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          171 NIDITLQWLIQHSKS  185 (188)
T ss_dssp             THHHHHHHHHHTCC-
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=3.7e-28  Score=200.36  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=125.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ...+||+++|++|||||||+ ++.++.+..+.+|.+.+  ...+.+++  +.+.+|||+|++.+..++..+++++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            34689999999999999999 99999887666676664  45667777  778999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH------------cCCcEE
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------------MKATLF  242 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~  242 (283)
                      |||++++++|+++..|+.++...  ..+.|.++|+||+|+..       ....+++.+.+..            .+++++
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-------AVSEAELRSALGLLNTTGSQRIEGQRPVEVF  169 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-------CCCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-------CCCHHHHHHHhCCccccccccccccceEEEE
Confidence            99999999999999999988764  24556689999999721       2234455554432            356799


Q ss_pred             EEcCCCCcCHHHHHHHHHHH
Q 023335          243 FSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       243 e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      ++||++|.||+++|++|.+.
T Consensus       170 ~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          170 MCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EeECCcCCCHHHHHHHHHhh
Confidence            99999999999999999764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=4.6e-29  Score=204.15  Aligned_cols=157  Identities=16%  Similarity=0.203  Sum_probs=122.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ ++.++.+....+|.|..  ...+.+++  +.+.+|||+|++.+..++..+++++|++++|
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   90 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            4699999999999999999 99988776666677744  34556664  6789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~  250 (283)
                      ||++++++|+.+..|+.++...  ..+.|.++|+||+|+..    ..  . .++..+.     +...+++++++||++|.
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~~--~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  163 (181)
T 1fzq_A           91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT----AA--P-ASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (181)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT----CC--C-HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc----CC--C-HHHHHHHhCchhccCCceEEEEccCCCCC
Confidence            9999999999999998887553  23556689999999721    11  1 1222211     12235679999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 023335          251 NVNKIFKFIMAKLFNL  266 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~  266 (283)
                      ||+++|++|.+.+.++
T Consensus       164 gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          164 GVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             THHHHHHHHHHTC---
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999877543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.95  E-value=3.2e-27  Score=194.99  Aligned_cols=161  Identities=25%  Similarity=0.441  Sum_probs=141.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ ++++..+. .+.+|.+.++....+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45799999999999999999 99998887 66678899998899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++..+|+++..|+..+..... ..+.++|+||+||.     .......++++.++...++.++++||+++.|+++
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-----~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-----HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999998877654 44557999999962     1223346778899999999999999999999999


Q ss_pred             HHHHHHHHH
Q 023335          255 IFKFIMAKL  263 (283)
Q Consensus       255 lf~~l~~~i  263 (283)
                      +|+.|.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998876

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.95  E-value=3.7e-27  Score=195.55  Aligned_cols=163  Identities=26%  Similarity=0.479  Sum_probs=140.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ ++++..+. .+.+|.+.++....+.+++..+.+.+||++|++.+..+...++++++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            4699999999999999999 99999887 566788888888899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++..+|+++..|+..+..... ..+.++|+||+||.     .......++++.++...++.++++||+++.|++++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-----~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l  158 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-----HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA  158 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-----cccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999998877654 44557999999972     22233467788999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |+.|.+.+.+.
T Consensus       159 ~~~l~~~~~~~  169 (199)
T 2f9l_A          159 FKNILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=2.6e-28  Score=200.45  Aligned_cols=161  Identities=17%  Similarity=0.205  Sum_probs=125.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ +++++.+....+|.+..  ...+.+++  +.+.+|||+|++.+..++..+++++|++|+|
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   96 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV   96 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence            4799999999999999999 99998887766777744  34555554  6789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ||++++++|+.+..|+..+....  .+.|+++|+||+|+..   ....... .......++..+++++++||++|.|+++
T Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (189)
T 2x77_A           97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD---AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVE  173 (189)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC---CCCHHHHHHHhChhhccCCceEEEEccCCCccCHHH
Confidence            99999999999999988887642  3556689999999721   1111111 1111112233456799999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|++|.+.+.+.
T Consensus       174 l~~~l~~~i~~~  185 (189)
T 2x77_A          174 GMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=2.1e-30  Score=215.71  Aligned_cols=166  Identities=23%  Similarity=0.335  Sum_probs=136.7

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  174 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i  174 (283)
                      ....+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            346799999999999999999 99998887 4444555443 55667788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC-------cccchHHHHHHHHHHcCC-cEEEEc
Q 023335          175 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-------LQWTIATQARAYAKAMKA-TLFFSS  245 (283)
Q Consensus       175 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-------~~~~~~~~~~~~~~~~~~-~~~e~S  245 (283)
                      |+|||++++++|+++. .|+..+....++.|+++|+||+|+.......       ......+++.++++.+++ +++++|
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            9999999999999997 8999988876666778999999973211000       012346778888888888 899999


Q ss_pred             CCCCcCHHHHHHHHHHHH
Q 023335          246 ATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i  263 (283)
                      |++|.||+++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=1.7e-27  Score=212.05  Aligned_cols=166  Identities=23%  Similarity=0.331  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++++|
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            589999999999999999 99999887 4445665444 56778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335          178 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATH  248 (283)
Q Consensus       178 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~  248 (283)
                      ||++++.+|+++. .|+..+....++.|+++|+||+||.....       .....+..+++.++++.+++ +++++||++
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  313 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  313 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999997 89999998877777789999999621100       00123447888999999997 899999999


Q ss_pred             CcCHHHHHHHHHHHHhCC
Q 023335          249 NINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~  266 (283)
                      |.||+++|+.|.+.+++.
T Consensus       314 ~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          314 QRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTHHHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.95  E-value=6.5e-28  Score=197.40  Aligned_cols=158  Identities=17%  Similarity=0.190  Sum_probs=125.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ...+||+++|++|||||||+ +++++......+|.+..  ...+.+++  +.+.+|||+|++++..++..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35799999999999999999 99988844666777744  34555654  678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCC
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHN  249 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  249 (283)
                      |||++++++|+++..|+.++...  ..+.|+++|+||+|+..    .  .. .++..+..     +..+++++++||++|
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~--~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG----A--LS-CNAIQEALELDSIRSHHWRIQGCSAVTG  164 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT----C--CC-HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC----C--CC-HHHHHHHhChhhccCCceEEEEeeCCCC
Confidence            99999999999999999888765  24566689999999721    1  11 22222221     234568999999999


Q ss_pred             cCHHHHHHHHHHHHhCC
Q 023335          250 INVNKIFKFIMAKLFNL  266 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~~  266 (283)
                      .|++++|++|.+.+.++
T Consensus       165 ~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          165 EDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TTHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999998765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=4.4e-28  Score=197.61  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=121.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|++|||||||+ +++++.+....+|.+..  ...+.+++  +.+.+|||+|++.+..++..+++++|++++|
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV   92 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999 99998886666677744  34555655  6789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCc
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNI  250 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~  250 (283)
                      ||++++++|+.+..|+..+....  .+.|+++|+||+|+..    .   ...+++.+...     ..+++++++||++|.
T Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (183)
T 1moz_A           93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG----A---LSASEVSKELNLVELKDRSWSIVASSAIKGE  165 (183)
T ss_dssp             EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT----C---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred             EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC----C---CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            99999999999999999887653  4556689999999722    1   11222322221     224579999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023335          251 NVNKIFKFIMAKLFN  265 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~  265 (283)
                      |++++|++|.+.+.+
T Consensus       166 gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          166 GITEGLDWLIDVIKE  180 (183)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=6.5e-29  Score=219.68  Aligned_cols=166  Identities=16%  Similarity=0.182  Sum_probs=129.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcccc----ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc---chhhhcccCcE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA  173 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~ad~  173 (283)
                      ||+++|+.|||||||+ ++.++.+..    ..+|.|.++..    ++ ..+++++|||+||++|..   ..+.||+++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            7999999999999999 887665432    34577877653    23 358899999999999974   46889999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-----ccchHHHHHHHHHH----cCCcEE
Q 023335          174 ILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-----QWTIATQARAYAKA----MKATLF  242 (283)
Q Consensus       174 iilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-----~~~~~~~~~~~~~~----~~~~~~  242 (283)
                      +|+|||++++  ++++.+..|+.++....++.|++|+|||+||   .+++.     +.+..++++++++.    +++.||
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL---~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~  152 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG---LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY  152 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS---SCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc---CchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence            9999999998  3444445556777667777777899999997   33222     23446778888886    688999


Q ss_pred             EEcCCCCcCHHHHHHHHHHHHhCCccccccccCC
Q 023335          243 FSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTI  276 (283)
Q Consensus       243 e~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~  276 (283)
                      ||||++ .||.++|..+++.++.+....++.++.
T Consensus       153 eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~  185 (331)
T 3r7w_B          153 LTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDN  185 (331)
T ss_dssp             CCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTG
T ss_pred             EeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999998 589999999999999888777666543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.7e-28  Score=209.85  Aligned_cols=160  Identities=14%  Similarity=0.164  Sum_probs=122.9

Q ss_pred             ceeeEEEEEcCC---------CCcHHHhH-hhhc---Cccc-cccccc-eeeeeEEEEE--------------ECCeEEE
Q 023335           98 LVSLKISLLGDC---------QIGKTSFV-KYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIA  148 (283)
Q Consensus        98 ~~~~KI~vlG~~---------~vGKSSLi-~~~~---~~~~-~~~~t~-~~~~~~~~~~--------------~~~~~~~  148 (283)
                      ...+||+|+|++         |||||||+ +|++   +.+. .+.+|+ +.++..+.+.              +++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            347999999999         99999999 9999   5555 455554 5554433322              4677899


Q ss_pred             EEEEe-----------------------CCCCCCcccchhhhcc---------------------cCcEEEEEEECCCh-
Q 023335          149 FSIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR-  183 (283)
Q Consensus       149 l~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~iilv~D~~~~-  183 (283)
                      ++|||                       ++|+++|..++..+++                     ++|++|+|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       7788888888888888                     89999999999998 


Q ss_pred             -hhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHH
Q 023335          184 -CTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFI  259 (283)
Q Consensus       184 -~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l  259 (283)
                       +||+.+..|+.++...  ..+.|++|||||+||    ..  .+. .++++++++. .+++++++||++|.||+++|++|
T Consensus       177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl----~~--~~~-v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE----GV--ERY-IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGG----BC--HHH-HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccc----cc--cHH-HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence             9999999999998875  345667899999996    11  122 2577788876 48899999999999999999999


Q ss_pred             HHHHh
Q 023335          260 MAKLF  264 (283)
Q Consensus       260 ~~~i~  264 (283)
                      ++.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=4.6e-27  Score=189.27  Aligned_cols=152  Identities=15%  Similarity=0.097  Sum_probs=115.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------cchhhhcc-
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-  169 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~-  169 (283)
                      ..+||+++|++|||||||+ ++++..+. ..+++++.+.....+.+++  ..+.+|||+|++.+.      .+...|++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            3689999999999999999 99988765 6667666676666777776  468899999999875      33456665 


Q ss_pred             -cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          170 -DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       170 -~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                       ++|++++|||+++.+   ....|+.++.+.  +.|.++|+||+|+..      ......++.++++.++++++++||++
T Consensus        80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~~--~~p~ilv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~SA~~  148 (165)
T 2wji_A           80 EKPDLVVNIVDATALE---RNLYLTLQLMEM--GANLLLALNKMDLAK------SLGIEIDVDKLEKILGVKVVPLSAAK  148 (165)
T ss_dssp             HCCSEEEEEEETTCHH---HHHHHHHHHHHT--TCCEEEEEECHHHHH------HTTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred             CCCCEEEEEecCCchh---HhHHHHHHHHhc--CCCEEEEEEchHhcc------ccChhhHHHHHHHHhCCCEEEEEcCC
Confidence             899999999998854   345688777652  456689999999621      11111246778888899999999999


Q ss_pred             CcCHHHHHHHHHHHH
Q 023335          249 NINVNKIFKFIMAKL  263 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i  263 (283)
                      |.||+++|+++.+.+
T Consensus       149 ~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          149 KMGIEELKKAISIAV  163 (165)
T ss_dssp             TBSHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=5e-27  Score=196.56  Aligned_cols=160  Identities=13%  Similarity=0.117  Sum_probs=114.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCe-EEEEEEEeCCCCCCccc-chhhhcccCcEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAI  174 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~i  174 (283)
                      ...+||+++|++|||||||+ +++++.+...+++++.++..  +.+++. .+.+.+|||+|++.+.. ++..|++++|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            35789999999999999999 99999988767776666553  566654 58899999999999987 788899999999


Q ss_pred             EEEEECCChh-hHHHHHH-HHHHHHhH---CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH--------------
Q 023335          175 LFMFDLTSRC-TLNSIVG-WYSEARKW---NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--------------  235 (283)
Q Consensus       175 ilv~D~~~~~-s~~~~~~-~~~~i~~~---~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~--------------  235 (283)
                      |+|||+++.+ ++..+.. |...+...   ..+.|.+||+||+||..   ........+.+.+...              
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM---AKSAKLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT---CCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC---cccHHHHHHHHHHHHHHHhccchhcccccc
Confidence            9999999854 4666654 44444432   23455689999999732   2111112222222211              


Q ss_pred             -------------------Hc--CCcEEEEcCCCC------cCHHHHHHHHHHH
Q 023335          236 -------------------AM--KATLFFSSATHN------INVNKIFKFIMAK  262 (283)
Q Consensus       236 -------------------~~--~~~~~e~Sa~~~------~~v~~lf~~l~~~  262 (283)
                                         .+  ++.|+++||++|      .||+++|++|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                               11  567999999999      9999999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=6.7e-27  Score=207.23  Aligned_cols=164  Identities=18%  Similarity=0.198  Sum_probs=130.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCc--ccc--ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc-----ccchhhhc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNE--QER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIAC  168 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~  168 (283)
                      ..+||+++|++|||||||+ +++++.  +..  +.+|.+.++.  .+.+++ .+.+.+|||+|++.+     ..++..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            3689999999999999999 998873  332  2335565554  444544 678999999999988     78889999


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHH---HHHHHhHCCCCceEEEeecCCCCCCCCCCccc----chHHHHHHHHHHcC---
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGW---YSEARKWNQTAIPILIGTKFDDFVRLPPDLQW----TIATQARAYAKAMK---  238 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~---~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~----~~~~~~~~~~~~~~---  238 (283)
                      +++|++|+|||++++++|+++..|   +.++....++.|.+|||||+|+   ..++.+.    ...+++.++++.+|   
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl---~~~~~r~~~~~v~~~~~~~~~~~~g~~~  155 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL---VQLDKREELFQIMMKNLSETSSEFGFPN  155 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccc---cchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999998766   4555555667777899999996   2211232    44688999999997   


Q ss_pred             CcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023335          239 ATLFFSSATHNINVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       239 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~  269 (283)
                      ++++++||++ .|+.++|..+++.+......
T Consensus       156 ~~~~~tSa~~-~~i~e~~~~iv~~li~~~~~  185 (307)
T 3r7w_A          156 LIGFPTSIWD-ESLYKAWSQIVCSLIPNMSN  185 (307)
T ss_dssp             CEEEECCTTS-SHHHHHHHHHHHTTCSCHHH
T ss_pred             eEEEEeeecC-ChHHHHHHHHHHHHcCCHHH
Confidence            7899999999 89999999999887765543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=5.6e-27  Score=209.66  Aligned_cols=162  Identities=18%  Similarity=0.189  Sum_probs=119.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ...+||+|+|++|||||||+ ++.++.+....+|.+.++.  .+...  .+.+.||||+|++.|..++..+++.+|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            35789999999999999999 9999998866677776653  34444  4678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |||++++++|+.+..|+..+....  ++.|+|||+||+|+..   ....... .+.....++..+++++++||++|.||+
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN---AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc---ccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            999999999999998887776543  3556689999999721   1111111 111111122234579999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 023335          254 KIFKFIMAKLFNL  266 (283)
Q Consensus       254 ~lf~~l~~~i~~~  266 (283)
                      ++|++|++.+.++
T Consensus       316 el~~~l~~~l~~~  328 (329)
T 3o47_A          316 EGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=9.2e-26  Score=184.72  Aligned_cols=157  Identities=15%  Similarity=0.113  Sum_probs=124.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------cchhhhcc
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK  169 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~  169 (283)
                      +..+||+++|++|||||||+ ++++..+. ..+++++.+.....+.+++  ..+.+|||+|++.+.      .+...+++
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            45799999999999999999 99987765 6677777777777777776  568899999999875      34566665


Q ss_pred             --cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          170 --DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       170 --~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                        .+|++++|+|.++   ++....|+.++..  .+.|.++|+||+|+..      .....+++.++++.++++++++||+
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~Sa~  151 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAK------SLGIEIDVDKLEKILGVKVVPLSAA  151 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHH------HTTCCCCHHHHHHHHTSCEEECBGG
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccc------cccchHHHHHHHHHhCCCeEEEEec
Confidence              4999999999875   5666788888765  3456689999999621      1111235677888889999999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCc
Q 023335          248 HNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +|.|++++|+++.+.+.+..
T Consensus       152 ~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          152 KKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GTBSHHHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999987654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.93  E-value=2.4e-25  Score=180.38  Aligned_cols=157  Identities=9%  Similarity=0.050  Sum_probs=116.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+++|++|||||||+ +++++.+. .+.++++.++....+.+++..  +.+|||+|++.+..++..++..+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            34789999999999999999 99999887 556666667766777788754  678999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------cC--CcEEEEcC
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------MK--ATLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~e~Sa  246 (283)
                      +|||+++....+.. .++..+.  ..+.|+++|+||+|+.    ...    .++.....+.       ++  ++++++||
T Consensus        84 ~v~d~~~~~~~~~~-~~l~~~~--~~~~p~ilv~nK~Dl~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           84 LVVAADDGVMPQTV-EAINHAK--AANVPIIVAINKMDKP----EAN----PDRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             EEEETTCCCCHHHH-HHHHHHG--GGSCCEEEEEETTTSS----CSC----HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             EEEECCCCCcHHHH-HHHHHHH--hCCCCEEEEEECccCC----cCC----HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            99999984332222 1222222  2345668999999972    111    1222222222       22  57999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCc
Q 023335          247 THNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      ++|.|++++|++|.+.+....
T Consensus       153 ~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          153 KTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhhhhhc
Confidence            999999999999999876543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.93  E-value=2.8e-25  Score=188.18  Aligned_cols=165  Identities=16%  Similarity=0.110  Sum_probs=118.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc---------cchhhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIA  167 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~  167 (283)
                      ..+||+|+|++|||||||+ +++++.+. ..++.+..+.....+..++  +.+.+|||+|+....         .....+
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  105 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITAL  105 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence            4689999999999999999 99998876 4444333344434444444  568899999984311         112335


Q ss_pred             cccCcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-cchHHHHHHHHHHcC--CcEE
Q 023335          168 CKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMK--ATLF  242 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~~~~~--~~~~  242 (283)
                      +..+|++|+|||++++.+|+.  ...|+..+....++.|.++|+||+|+.   ..... ....+....+++..+  ++++
T Consensus       106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC---NMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC---C--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC---CchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            788999999999999988752  346777777655566778999999972   21111 112346777888877  8999


Q ss_pred             EEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023335          243 FSSATHNINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       243 e~Sa~~~~~v~~lf~~l~~~i~~~~~  268 (283)
                      ++||++|.||+++|++|.+.+.+..+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.93  E-value=9.8e-26  Score=202.08  Aligned_cols=202  Identities=16%  Similarity=0.193  Sum_probs=150.2

Q ss_pred             hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceee----EEEEEcCCCCcHHHhH-
Q 023335           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV-  117 (283)
Q Consensus        43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~----KI~vlG~~~vGKSSLi-  117 (283)
                      .++++++.+|.+|.++.++.+++...     |..+..|.++         +...-..++    +|+|+|.+|||||||+ 
T Consensus       111 ~~~~~~~~GG~gG~Gn~~f~~~~~~~-----p~~~~~g~~g---------~~~~~~leLk~la~V~lvG~~nvGKSTLln  176 (342)
T 1lnz_A          111 GQRAVIARGGRGGRGNSRFATPANPA-----PQLSENGEPG---------KERYIVLELKVLADVGLVGFPSVGKSTLLS  176 (342)
T ss_dssp             TCEEEEECCCCCCCCGGGSCBTTBSS-----CCCCCCCCCC---------CEEEEEEEEECCCCEEEESSTTSSHHHHHH
T ss_pred             CcEEEEeCCCCCccCccccccccccc-----cccccCCCCc---------chhhHhhhhhhcCeeeeeCCCCCCHHHHHH
Confidence            47899999999999998887766654     4444444332         111122233    5889999999999999 


Q ss_pred             hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCC----CCcccchhhhccc---CcEEEEEEECCC---hhhH
Q 023335          118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----SRSFDHVPIACKD---AVAILFMFDLTS---RCTL  186 (283)
Q Consensus       118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----~~~~~~~~~~~~~---ad~iilv~D~~~---~~s~  186 (283)
                      ++++..+. ..++.+..+.....+.+++ ...+.+|||+|.    +.+..+...|++.   +|++|+|||+++   ++++
T Consensus       177 ~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~  255 (342)
T 1lnz_A          177 VVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY  255 (342)
T ss_dssp             HSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH
T ss_pred             HHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH
Confidence            99988765 5566333444444566654 236889999994    4456676777654   999999999999   8899


Q ss_pred             HHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHHH
Q 023335          187 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       187 ~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      +++..|+.++..+.+   +.|.+||+||+|+    ..     ..+...++++.++  .+++++||++++|++++|++|.+
T Consensus       256 ~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl----~~-----~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~  326 (342)
T 1lnz_A          256 DDYLTINQELSEYNLRLTERPQIIVANKMDM----PE-----AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN  326 (342)
T ss_dssp             HHHHHHHHHHHHSCSSTTTSCBCBEEECTTS----TT-----HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEEECccC----CC-----CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHH
Confidence            999999999998753   5566899999996    11     1245667777776  68999999999999999999999


Q ss_pred             HHhCCcc
Q 023335          262 KLFNLPW  268 (283)
Q Consensus       262 ~i~~~~~  268 (283)
                      .+.+.++
T Consensus       327 ~l~~~~~  333 (342)
T 1lnz_A          327 QLENTPE  333 (342)
T ss_dssp             HHTSCCC
T ss_pred             HHhhCcc
Confidence            9977654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=6.6e-26  Score=215.24  Aligned_cols=165  Identities=20%  Similarity=0.304  Sum_probs=125.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEE------EEE--CCeEEEEEEEeCCCCCCcccchh
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVP  165 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~------~~~--~~~~~~l~i~Dt~G~~~~~~~~~  165 (283)
                      .....+||+++|.+|||||||+ +++++.+. ...+|.|.++..+.      +.+  ++..+.+.+|||+|++.+..+..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3456899999999999999999 99999987 55568888776542      122  33467899999999999999999


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                      .+++++|++|+|||+++.   +.+..|+.++..+.++.|.|||+||+|+.    . ......+++++++...+++++++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~vS  188 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDEN----P-SYNIEQKKINERFPAIENRFHRIS  188 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTC----T-TCCCCHHHHHHHCGGGTTCEEECC
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcc----c-ccccCHHHHHHHHHhcCCceEEEe
Confidence            999999999999998765   55678999999998778889999999972    1 223346778888888999999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhCCcc
Q 023335          246 ATHNINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~~~~  268 (283)
                      |++|.||+++|+.+.+.+.+.+.
T Consensus       189 A~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          189 CKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             C-----CTTHHHHHHHHHTCTTS
T ss_pred             cCcccCHHHHHHHHHHHHhcccc
Confidence            99999999999999999987664

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.92  E-value=5.5e-26  Score=184.44  Aligned_cols=151  Identities=17%  Similarity=0.179  Sum_probs=115.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch--------hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~  168 (283)
                      .+||+++|++|||||||+ ++++..+.  ..+++++.++....+.+++..  +.+|||+|++.+....        ..++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            579999999999999999 99987653  556666777777888888754  7899999997653221        2367


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      +++|++++|||+++..+++. ..|+..+..... +.|.|+|+||+||..   .. .        .+++..+++++++||+
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~---~~-~--------~~~~~~~~~~~~~SA~  148 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITG---ET-L--------GMSEVNGHALIRLSAR  148 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHC---CC-C--------EEEEETTEEEEECCTT
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCc---ch-h--------hhhhccCCceEEEeCC
Confidence            99999999999999988764 578888877654 455689999999621   11 1        1122246789999999


Q ss_pred             CCcCHHHHHHHHHHHHhC
Q 023335          248 HNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~  265 (283)
                      +|.||+++|++|.+.+..
T Consensus       149 ~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          149 TGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TCTTHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHhhh
Confidence            999999999999987644

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.91  E-value=1.1e-24  Score=179.35  Aligned_cols=155  Identities=17%  Similarity=0.169  Sum_probs=106.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCC----------CCCcccchhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~  166 (283)
                      ..+||+|+|.+|||||||+ +++++.+. ...++.+.+.......+++   .+.+|||+|          ++.+..+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            4689999999999999999 99998865 4444555444444444544   488999999          6667777788


Q ss_pred             hcccC---cEEEEEEECCChhhHHHHH--HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHH-HHHHcCCc
Q 023335          167 ACKDA---VAILFMFDLTSRCTLNSIV--GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA-YAKAMKAT  240 (283)
Q Consensus       167 ~~~~a---d~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~-~~~~~~~~  240 (283)
                      +++.+   |++++|||+++..++....  .|+..     .+.|.++|+||+|+   ..........+++.+ ++...+++
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADK---IPKGKWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG---SCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccc---CChHHHHHHHHHHHHHHcccCCCc
Confidence            88777   9999999999988877643  44432     35567899999997   221111111233333 33334678


Q ss_pred             EEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          241 LFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       241 ~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ++++||++|.|++++|++|.+.+.
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             eEEEEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999999998763

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.91  E-value=1.5e-24  Score=172.58  Aligned_cols=148  Identities=20%  Similarity=0.230  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc-------ccchhhhccc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------FDHVPIACKD  170 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~  170 (283)
                      .||+++|++|||||||+ ++.++.+.  ...++++.+.....+..++.  .+.+|||+|++.+       ......+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999 99988754  45555566666677777775  5789999998873       3345567899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN  249 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~  249 (283)
                      +|++++|||+++..+... ..+...+..  .+.|.++|+||+|+.    +.     .+++.+++ .+++ +++++||++|
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~----~~-----~~~~~~~~-~~~~~~~~~~Sa~~~  146 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR--KGKPVILVATKVDDP----KH-----ELYLGPLY-GLGFGDPIPTSSEHA  146 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH--HTCCEEEEEECCCSG----GG-----GGGCGGGG-GGSSCSCEECBTTTT
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh--cCCCEEEEEECcccc----cc-----hHhHHHHH-hCCCCCeEEEecccC
Confidence            999999999998654432 112222222  345678999999962    11     13344455 5677 8999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023335          250 INVNKIFKFIMAKL  263 (283)
Q Consensus       250 ~~v~~lf~~l~~~i  263 (283)
                      .|++++|+++.+.+
T Consensus       147 ~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          147 RGLEELLEAIWERL  160 (161)
T ss_dssp             BSHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHhC
Confidence            99999999998864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.91  E-value=4.7e-24  Score=175.02  Aligned_cols=156  Identities=13%  Similarity=0.134  Sum_probs=115.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCC----------CCCcccchhhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPIA  167 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~~  167 (283)
                      ..+||+++|++|||||||+ +++++.+....++.+.+........+.   .+.+|||+|          ++.+..+...+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   98 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDY   98 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence            4689999999999999999 999988665555555444433333333   467999999          55666777778


Q ss_pred             cccC---cEEEEEEECCChhhH--HHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcE
Q 023335          168 CKDA---VAILFMFDLTSRCTL--NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATL  241 (283)
Q Consensus       168 ~~~a---d~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~  241 (283)
                      ++.+   |++++|+|.++..+.  ..+..|+...     +.|.++|+||+|+   .+........+++++++...+ +++
T Consensus        99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 3pqc_A           99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDK---VKMSERAKKLEEHRKVFSKYGEYTI  170 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGG---SCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred             HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhc---CChHHHHHHHHHHHHHHhhcCCCce
Confidence            7766   999999999876443  3344555543     4567899999997   333333444677777777744 789


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          242 FFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       242 ~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      +++||++|.||+++|++|.+.+.+
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999988754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.91  E-value=1.3e-23  Score=186.06  Aligned_cols=171  Identities=13%  Similarity=0.100  Sum_probs=131.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc----------cchh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHVP  165 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~  165 (283)
                      ..-.|+++|.+|||||||+ ++++..+.  ...+.+..+.....+..+ ....+.+|||||...+.          ....
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~   87 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK   87 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence            4679999999999999999 99998876  344433333333344444 14568899999997655          4556


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEE
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFF  243 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e  243 (283)
                      .+++++|++++|+|+++..++++...|++.+...  +.|.++|+||+|+   ..  ......+....+.+.++  .++++
T Consensus        88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl---~~--~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDK---IG--PAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGG---SS--SGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccC---CC--CHHHHHHHHHHHHHhccCCCeEEE
Confidence            7889999999999999999999888888888763  4567899999996   21  23445677778888876  78999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCCccccccccCCC
Q 023335          244 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIG  277 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~  277 (283)
                      +||++|.|++++|+++.+.+.+.++........+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td  194 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPEGEPLFPEDMITD  194 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBC
T ss_pred             EeCCCCCCHHHHHHHHHHhCccCCCCCCcccccC
Confidence            9999999999999999999988876655544333

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.91  E-value=8.1e-24  Score=182.90  Aligned_cols=154  Identities=16%  Similarity=0.125  Sum_probs=119.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc------hhhhc-
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC-  168 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~-  168 (283)
                      ...+||+++|++|||||||+ ++++..+. ..+++++.+.....+..++  ..+.+|||||+..+...      ...|+ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            35789999999999999999 99998876 6667666666555665555  67899999999887653      35566 


Q ss_pred             -ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          169 -KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       169 -~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                       .++|++++|+|+++.++.   ..|..++...  ..|.++|+||+|+.      .......+..++++.++++++++||+
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~------~~~~i~~~~~~l~~~lg~~vi~~SA~  149 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEA------KKTGMKIDRYELQKHLGIPVVFTSSV  149 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHH------HHTTCCBCHHHHHHHHCSCEEECCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCC------CccchHHHHHHHHHHcCCCEEEEEee
Confidence             589999999999987643   3466666543  45668999999961      11111234678888999999999999


Q ss_pred             CCcCHHHHHHHHHHHHh
Q 023335          248 HNINVNKIFKFIMAKLF  264 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~  264 (283)
                      +|.|++++|+++.+.+.
T Consensus       150 ~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          150 TGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhh
Confidence            99999999999999775

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.91  E-value=1e-24  Score=178.39  Aligned_cols=153  Identities=15%  Similarity=0.173  Sum_probs=117.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCC-----------CCCcccchhhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA  167 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~~~  167 (283)
                      +||+++|++|||||||+ +++++.+. .+.++++.+.  ..+.++    .+.+|||+|           ++.+..+...+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            69999999999999999 99999877 4455443333  344444    588999999           56667777788


Q ss_pred             ccc-CcEEEEEEECCChhhHHHH-HHHHHH--------HHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH
Q 023335          168 CKD-AVAILFMFDLTSRCTLNSI-VGWYSE--------ARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK  235 (283)
Q Consensus       168 ~~~-ad~iilv~D~~~~~s~~~~-~~~~~~--------i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~  235 (283)
                      +++ ++++++||++.|..+++++ ..|...        +...  ..+.|.++|+||+|+    ....    .++++++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl----~~~~----~~~~~~~~~  147 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK----IKNV----QEVINFLAE  147 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGG----CSCH----HHHHHHHHH
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhc----cCcH----HHHHHHHHH
Confidence            887 9988899999989999887 577653        2221  235566899999996    2111    567788888


Q ss_pred             HcCCc-------EEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          236 AMKAT-------LFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       236 ~~~~~-------~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      .++++       ++++||++|.|++++|++|.+.+.+..
T Consensus       148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            88875       699999999999999999999886643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.89  E-value=9.3e-24  Score=182.32  Aligned_cols=149  Identities=11%  Similarity=0.069  Sum_probs=117.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc----------chhhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC  168 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~~  168 (283)
                      .||+++|.+|||||||+ ++++..+. ...++++.+.....+.+++.  .+.+|||||...+..          +...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999 99998766 77787777777778888775  688999999988764          456677


Q ss_pred             --ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335          169 --KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA  246 (283)
Q Consensus       169 --~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  246 (283)
                        .++|++|+|+|+++.+++..+..|+.+     ...|.++|+||+|+.   .   ..........+++.++++++++||
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~-----~~~pvilv~NK~Dl~---~---~~~~~~~~~~l~~~lg~~vi~~SA  148 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLFE-----LGKPVVVALNMMDIA---E---HRGISIDTEKLESLLGCSVIPIQA  148 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHTT-----SCSCEEEEEECHHHH---H---HTTCEECHHHHHHHHCSCEEECBG
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHHH-----cCCCEEEEEEChhcC---C---cCCcHHHHHHHHHHcCCCEEEEEC
Confidence              899999999999997666554444332     245668999999962   1   111122345677888999999999


Q ss_pred             CCCcCHHHHHHHHHHH
Q 023335          247 THNINVNKIFKFIMAK  262 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~  262 (283)
                      ++|.|++++|+++.+.
T Consensus       149 ~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          149 HKNIGIPALQQSLLHC  164 (256)
T ss_dssp             GGTBSHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999886

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.89  E-value=1.4e-23  Score=182.62  Aligned_cols=151  Identities=16%  Similarity=0.063  Sum_probs=114.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------cchhhhcc--
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK--  169 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~--  169 (283)
                      .+||+++|++|||||||+ ++++..+. ..++++..+.  +...++. ...+.+|||||++.+.      .+.+.|+.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            579999999999999999 99987644 6666444433  3444555 5678999999999876      34566775  


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  249 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  249 (283)
                      ++|++++|||+++.+++   ..|..++..  ...|.++|+||+|+.      .......+...+++.++++++++||++|
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~------~~~~~~~~~~~l~~~lg~~vi~~SA~~g  148 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVL------DGQGKKINVDKLSYHLGVPVVATSALKQ  148 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHH------HHTTCCCCHHHHHHHHTSCEEECBTTTT
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhC------CcCCcHHHHHHHHHHcCCCEEEEEccCC
Confidence            69999999999986543   456666655  355668999999962      1111123567788889999999999999


Q ss_pred             cCHHHHHHHHHHHHh
Q 023335          250 INVNKIFKFIMAKLF  264 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~  264 (283)
                      .||+++|+++.+.+.
T Consensus       149 ~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          149 TGVDQVVKKAAHTTT  163 (272)
T ss_dssp             BSHHHHHHHHHHSCT
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999988653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.89  E-value=1.2e-23  Score=183.29  Aligned_cols=155  Identities=14%  Similarity=0.040  Sum_probs=117.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc----------hhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~~  166 (283)
                      ..+||+++|.+|||||||+ ++++..+. ...++++.+.....+..++.  .+.+|||||+..+...          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence            4689999999999999999 99998876 67777777777777777664  4678999999887632          233


Q ss_pred             hc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335          167 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  244 (283)
Q Consensus       167 ~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  244 (283)
                      |+  +++|++|+|+|+++.++...+..|+.   ..  +.|.|+|+||+|+.      ...........+++.++++++++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~--~~p~ivv~NK~Dl~------~~~~~~~~~~~l~~~lg~~~i~~  148 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQLL---EL--GIPCIVALNMLDIA------EKQNIRIEIDALSARLGCPVIPL  148 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH--TCCEEEEEECHHHH------HHTTEEECHHHHHHHHTSCEEEC
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc--CCCEEEEEECccch------hhhhHHHHHHHHHHhcCCCEEEE
Confidence            33  79999999999998665544444443   33  45678999999961      11111223567788889999999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCC
Q 023335          245 SATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ||++|.|++++|+++.+.+.+.
T Consensus       149 SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          149 VSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             CCGGGHHHHHHHHHHHTCCCCC
T ss_pred             EcCCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998877554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=3.4e-23  Score=191.90  Aligned_cols=247  Identities=15%  Similarity=0.150  Sum_probs=148.8

Q ss_pred             hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcc------cccccccCCCCCCCCCCccc
Q 023335            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM   77 (283)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~------~~~~~~~~~~~~~~p~p~~~   77 (283)
                      +..++..++.++...++.+|.+.++......+.+.+++.-.+++++-...-...      .+..+...     .+-+..+
T Consensus        72 ~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~-----~~~~iSA  146 (436)
T 2hjg_A           72 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFG-----EPYPISG  146 (436)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSC-----CCEECBT
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCC-----CeEEEeC
Confidence            455666677788888899999988776665555555544444444333111000      11111100     1111111


Q ss_pred             ccccc--cc----ccccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEE
Q 023335           78 EAGLV--EL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIA  148 (283)
Q Consensus        78 ~~g~~--~~----~~~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~  148 (283)
                      ..|..  ..    ................+||+++|.+|||||||+ ++++..+.  ..+++++.+.....+.+++..  
T Consensus       147 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--  224 (436)
T 2hjg_A          147 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--  224 (436)
T ss_dssp             TTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--
T ss_pred             cCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--
Confidence            22210  00    000000001112234689999999999999999 99998864  666766677767777888765  


Q ss_pred             EEEEeCCCC----------CCcccchh-hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335          149 FSIWDVGGD----------SRSFDHVP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       149 l~i~Dt~G~----------~~~~~~~~-~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~  217 (283)
                      +.+|||+|+          +.|..+.. .+++.+|++++|||+++..++++. .|+..+..  ...++|+|+||+|+.  
T Consensus       225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~--  299 (436)
T 2hjg_A          225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAV--  299 (436)
T ss_dssp             EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGS--
T ss_pred             EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCC--
Confidence            789999997          33433333 478899999999999999888875 57777664  345668999999972  


Q ss_pred             CCCCcccchHHH-HHHH----HHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          218 LPPDLQWTIATQ-ARAY----AKAMKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       218 l~~~~~~~~~~~-~~~~----~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                       ...  ....++ ..++    +...+++++++||++|.||+++|+.+.+.+.+
T Consensus       300 -~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          300 -DKD--ESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             -CCC--TTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -Ccc--hHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence             211  111122 2222    22346799999999999999999999987764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.88  E-value=2.9e-22  Score=176.86  Aligned_cols=162  Identities=16%  Similarity=0.126  Sum_probs=113.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--------ccchhh
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPI  166 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~  166 (283)
                      .+..+|+++|.+|||||||+ ++++.++.  ...+.+..+.....+..+  ...+.+|||||....        ......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            45678999999999999999 99998875  344433223322333333  467889999998873        345567


Q ss_pred             hcccCcEEEEEEECCChhhHHHHHHHH-HHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEE
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFS  244 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~~~~-~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~  244 (283)
                      +++++|++++|||+++..+..  ..|+ +.+....++.|.++|+||+|+   .. .... ..+.++++   .+ .+++++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl---~~-~~~~-~~~~~~~~---~~~~~~~~i  152 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDA---AK-YPEE-AMKAYHEL---LPEAEPRML  152 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGG---CS-SHHH-HHHHHHHT---STTSEEEEC
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECccc---CC-chHH-HHHHHHHh---cCcCcEEEE
Confidence            889999999999999875544  3444 556655445677899999996   21 1110 22223332   23 468999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCCccccc
Q 023335          245 SATHNINVNKIFKFIMAKLFNLPWTVK  271 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~~~~~~  271 (283)
                      ||++|.|++++|+.+.+.+.+.++...
T Consensus       153 SA~~g~gv~~l~~~l~~~l~~~~~~y~  179 (301)
T 1wf3_A          153 SALDERQVAELKADLLALMPEGPFFYP  179 (301)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCBCCCSSC
T ss_pred             eCCCCCCHHHHHHHHHHhcccCCCCCC
Confidence            999999999999999998877765443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.88  E-value=1.9e-22  Score=175.48  Aligned_cols=157  Identities=16%  Similarity=0.096  Sum_probs=122.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc------chhhhc--
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--  168 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--  168 (283)
                      +.+||+++|++|||||||+ ++++..+. ...++++.+.....+.+++..  +.+|||||+..+..      +...|+  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            4689999999999999999 99998876 677777778777777777754  78999999998776      566666  


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      .++|++++|+|+++.+   ....|..++.... ..|.++|+||+|+.      ...........+++.++++++++||++
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~-~~p~ilv~NK~Dl~------~~~~~~~~~~~l~~~lg~~~~~~Sa~~  149 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEME-VKNIILVLNKFDLL------KKKGAKIDIKKMRKELGVPVIPTNAKK  149 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT-CCSEEEEEECHHHH------HHHTCCCCHHHHHHHHSSCEEECBGGG
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhcC-CCCEEEEEEChhcC------cccccHHHHHHHHHHcCCcEEEEEeCC
Confidence            6899999999998853   3334555554432 25668999999961      111112236778888999999999999


Q ss_pred             CcCHHHHHHHHHHHHhCCc
Q 023335          249 NINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~~  267 (283)
                      |.|++++|+.+.+.+.+..
T Consensus       150 g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          150 GEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             TBTHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHhccc
Confidence            9999999999999876543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=1.9e-22  Score=187.87  Aligned_cols=247  Identities=15%  Similarity=0.155  Sum_probs=154.6

Q ss_pred             hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcc------cccccccCCCCCCCCCCccc
Q 023335            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM   77 (283)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~------~~~~~~~~~~~~~~p~p~~~   77 (283)
                      +..++..++..++..++.+|.+.++.....-+.+.++...-+++++-...-...      .+..+...     .+-+..+
T Consensus        92 ~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~-----~~~~iSA  166 (456)
T 4dcu_A           92 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFG-----EPYPISG  166 (456)
T ss_dssp             HHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSS-----SEEECCT
T ss_pred             HHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCC-----ceEEeec
Confidence            455666677778888899999988887777777777765555555443111000      11111100     0001111


Q ss_pred             ccccc--cc----ccccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEE
Q 023335           78 EAGLV--EL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIA  148 (283)
Q Consensus        78 ~~g~~--~~----~~~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~  148 (283)
                      ..|..  ..    ................+||+++|.+|||||||+ ++++....  ..+++++.+.....+.+++.  .
T Consensus       167 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~  244 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--E  244 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--E
T ss_pred             ccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--e
Confidence            11100  00    000000011122344789999999999999999 99977633  67777777777777888876  5


Q ss_pred             EEEEeCCC----------CCCcccchhh-hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335          149 FSIWDVGG----------DSRSFDHVPI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       149 l~i~Dt~G----------~~~~~~~~~~-~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~  217 (283)
                      +.+|||+|          ++.|..+... +++.+|++|+|+|+++..+.. ...|+..+..  .+.|.|||+||+|+.  
T Consensus       245 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~--  319 (456)
T 4dcu_A          245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAV--  319 (456)
T ss_dssp             EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGS--
T ss_pred             EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcC--
Confidence            78999999          6666666554 789999999999998864432 2456666654  345668999999972  


Q ss_pred             CCCCcccchHHHHHHHHHHc-----CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          218 LPPDLQWTIATQARAYAKAM-----KATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                       .  ......+++.+.++..     +++++++||++|.||+++|+.+.+.+.+
T Consensus       320 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          320 -D--KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             -C--CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -C--CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence             2  1223345555555554     5799999999999999999999987744

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.88  E-value=8.6e-23  Score=171.66  Aligned_cols=161  Identities=14%  Similarity=0.033  Sum_probs=106.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCcc-c--cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCC----------Ccccc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQ-E--RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS----------RSFDH  163 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~-~--~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~----------~~~~~  163 (283)
                      ..+||+|+|.+|||||||+ ++++..+ .  ...+.+.  .......+. .....+.+|||+|..          .+..+
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRT--QHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSC--CCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcc--cceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4689999999999999999 9999873 2  3333222  222233333 334668899999943          33455


Q ss_pred             hhhhccc---CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH----
Q 023335          164 VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----  236 (283)
Q Consensus       164 ~~~~~~~---ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~----  236 (283)
                      ...|++.   +|++++|+|+++..+.. ...|+..+..  ...|.++|+||+|+   ..........++..+....    
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDK---LTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEecccc---CChhhHHHHHHHHHHHHHhhhhc
Confidence            5566665   78899999998764422 2345555554  34567899999996   2211111122333333333    


Q ss_pred             ---cCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          237 ---MKATLFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       237 ---~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                         .+++++++||++|.||+++|++|.+.+....
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence               4568999999999999999999999886543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.87  E-value=1.1e-21  Score=182.85  Aligned_cols=154  Identities=14%  Similarity=0.201  Sum_probs=96.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch--------hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~  168 (283)
                      .+||+++|.+|||||||+ ++++....  ..+++++.++....+.+++.  .+.+|||+|+..+....        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            589999999999999999 99988643  66777777777778888874  58899999988765433        3478


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      +.+|++++|||+++..+++.+..+...+... .+.|.|+|+||+|+.    ....  .  ..+.+.+....+++++||++
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~----~~~~--~--~~~~l~~~~~~~~i~vSAkt  381 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRA----ANAD--A--LIRAIADGTGTEVIGISALN  381 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSC----TTTH--H--HHHHHHHHHTSCEEECBTTT
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCC----Cccc--h--hHHHHHhcCCCceEEEEECC
Confidence            9999999999999998886443333322222 255668999999962    2111  1  12344444347899999999


Q ss_pred             CcCHHHHHHHHHHHHh
Q 023335          249 NINVNKIFKFIMAKLF  264 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~  264 (283)
                      |.||+++|++|.+.+.
T Consensus       382 g~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          382 GDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TBSHHHHHHHHTHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999999887

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=3.5e-23  Score=173.59  Aligned_cols=145  Identities=14%  Similarity=0.145  Sum_probs=103.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcccc----ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhccc--
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD--  170 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--  170 (283)
                      ...+||+++|++|||||||+ ++++..+..    ..++++.++         ..+.+.+|||+|++.+...+..+++.  
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            34689999999999999999 999888653    233444333         34568999999999999888888887  


Q ss_pred             --CcEEEEEEECC-ChhhHHHHHHHHHHHHhH-----CCCCceEEEeecCCCCCCCCCC-cccchHHHHHHHHHHcCCcE
Q 023335          171 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW-----NQTAIPILIGTKFDDFVRLPPD-LQWTIATQARAYAKAMKATL  241 (283)
Q Consensus       171 --ad~iilv~D~~-~~~s~~~~~~~~~~i~~~-----~~~~~~ilvgnK~DL~~~l~~~-~~~~~~~~~~~~~~~~~~~~  241 (283)
                        +|++|+|||++ ++++|..+..|+.++...     ..+.|.++|+||+|+....... ......+++..++...++.+
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~  160 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL  160 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence              99999999999 889999999998888764     2355668999999973211100 00112566778888888899


Q ss_pred             EEEcCCCCcC
Q 023335          242 FFSSATHNIN  251 (283)
Q Consensus       242 ~e~Sa~~~~~  251 (283)
                      +++||++|.+
T Consensus       161 ~~~Sa~~~~~  170 (218)
T 1nrj_B          161 NEVERKINEE  170 (218)
T ss_dssp             HC--------
T ss_pred             cccccccccc
Confidence            9999998875

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.86  E-value=5.2e-22  Score=182.41  Aligned_cols=156  Identities=15%  Similarity=0.079  Sum_probs=114.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch-------hhh
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PIA  167 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~  167 (283)
                      ...+||+|+|..|+|||||+ ++++..+.  ...++++.+...+.+.+.+.. .+.+|||+|++.+..+.       ..+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHH
Confidence            44789999999999999999 99998874  555555666666777776642 68899999999876653       447


Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      ++++|++|+|||++..+   ....|+..+...  +.|+|+|+||+|+.    ....   .+..+++++.++++++++||+
T Consensus       111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~----~~~~---~~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVL----GEKA---EELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             HTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTT----TCCC---THHHHHSSCCTTCCCCCCSSC
T ss_pred             HhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCC----CccH---HHHHHHHHHHcCCCEEEEECC
Confidence            89999999999994333   335677777665  45678999999972    2211   155667777889999999999


Q ss_pred             CCcCHHHHHHHHHHHHhCC
Q 023335          248 HNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~  266 (283)
                      +|.|++++|++|.+.+.+.
T Consensus       179 tg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHhhhhh
Confidence            9999999999999998544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=7.9e-21  Score=176.11  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc---------ccchhhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC  168 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~  168 (283)
                      .+|+++|.+|||||||+ ++++....  ...++++.+.....+.+++..  +.+|||+|.+..         ......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999 99988754  666666667777788888765  688999998753         23456688


Q ss_pred             ccCcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHH-HHHHHHcCC-cEEEE
Q 023335          169 KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQA-RAYAKAMKA-TLFFS  244 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~e~  244 (283)
                      ++||++|+|||+++..+..+  +..|+..     .+.|.+||+||+|+    .  ..  ...+. .++. .+++ .++++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~----~--~~--~~~~~~~~~~-~lg~~~~~~i  145 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAEN----L--RE--FEREVKPELY-SLGFGEPIPV  145 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCS----H--HH--HHHHTHHHHG-GGSSCSCEEC
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCC----c--cc--cHHHHHHHHH-hcCCCCEEEE
Confidence            99999999999988665543  3344433     14577899999995    1  11  12223 4444 4576 78999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCC
Q 023335          245 SATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ||++|.|++++|+++.+.+.+.
T Consensus       146 SA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          146 SAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHT
T ss_pred             eccCCCCHHHHHHHHHHhcccc
Confidence            9999999999999999988643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.85  E-value=1.5e-20  Score=172.32  Aligned_cols=203  Identities=13%  Similarity=0.081  Sum_probs=145.8

Q ss_pred             hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCcee----eEEEEEcCCCCcHHHhH-
Q 023335           43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVS----LKISLLGDCQIGKTSFV-  117 (283)
Q Consensus        43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~----~KI~vlG~~~vGKSSLi-  117 (283)
                      .++++++.||.+|.++.++.+++...     |+.+..|.++.         ...-..+    -.|+|+|.+|||||||+ 
T Consensus       110 ~~~~~~~~GG~gG~Gn~~f~~~~~~~-----p~~~~~g~~g~---------~~~i~lelk~g~~VgLVG~~gAGKSTLL~  175 (416)
T 1udx_A          110 GQTVLVARGGAGGRGNMHFVSPTRQA-----PRFAEAGEEGE---------KRRLRLELMLIADVGLVGYPNAGKSSLLA  175 (416)
T ss_dssp             TCEEEEECCCCCCCCGGGGCCSSCSS-----CCEEECCCCCC---------EEEEEEEECCSCSEEEECCGGGCHHHHHH
T ss_pred             CceEEEecCCCCCcccceeecccccC-----cccccCCCCce---------EeeeeeEEcCCCEEEEECCCCCcHHHHHH
Confidence            57889999999999998887766653     56666664431         1111112    35789999999999999 


Q ss_pred             hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhc---ccCcEEEEEEECCChhhHHHH
Q 023335          118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSRCTLNSI  189 (283)
Q Consensus       118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~ad~iilv~D~~~~~s~~~~  189 (283)
                      .+++.... ..++.+........+.+++ ...+.+||++|...    +..+...++   ..++.+++++|++ .+++.++
T Consensus       176 ~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~l  253 (416)
T 1udx_A          176 AMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTL  253 (416)
T ss_dssp             HHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHH
T ss_pred             HHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHH
Confidence            88877654 4555333333344555554 24578999999743    233333333   4799999999998 7788888


Q ss_pred             HHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          190 VGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       190 ~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ..|..++..+..   ..|.|||+||+|+    ..  . ...+++.+.++..+++++++||++++|+++++++|.+.+.+.
T Consensus       254 s~g~~el~~la~aL~~~P~ILVlNKlDl----~~--~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          254 ETLRKEVGAYDPALLRRPSLVALNKVDL----LE--E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHCHHHHHSCEEEEEECCTT----SC--H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhHHhhcCCEEEEEECCCh----hh--H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence            888888877643   4677899999996    21  1 234555566666788999999999999999999999999876


Q ss_pred             cc
Q 023335          267 PW  268 (283)
Q Consensus       267 ~~  268 (283)
                      ++
T Consensus       327 ~~  328 (416)
T 1udx_A          327 PP  328 (416)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.85  E-value=4.4e-20  Score=166.67  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=118.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc---------chhhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA  167 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~  167 (283)
                      ..++|+++|.+|||||||+ ++++..+. ..++.+..+.....+..++  ..+.+|||+|...+..         ....+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            4579999999999999999 99988765 4444333333333444443  5688999999865321         11124


Q ss_pred             cccCcEEEEEEECCChh--hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335          168 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                      ...+|++++|+|+++..  +++....|+.++.....+.|.|+|+||+|+    ...  . ..+++.++++..+++++++|
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl----~~~--~-~~~~~~~~~~~~~~~~~~iS  316 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV----ADE--E-NIKRLEKFVKEKGLNPIKIS  316 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT----CCH--H-HHHHHHHHHHHTTCCCEECB
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc----CCh--H-HHHHHHHHHHhcCCCeEEEe
Confidence            45799999999999887  788888999999887656677899999996    211  1 12456667778889999999


Q ss_pred             CCCCcCHHHHHHHHHHHHhC
Q 023335          246 ATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       246 a~~~~~v~~lf~~l~~~i~~  265 (283)
                      |++|+||+++|++|.+.+..
T Consensus       317 A~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999998854

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.84  E-value=1.1e-20  Score=176.38  Aligned_cols=151  Identities=15%  Similarity=0.229  Sum_probs=116.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCC-Cccc--------chhhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFD--------HVPIA  167 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~--------~~~~~  167 (283)
                      .+||+++|.+|||||||+ ++++.++.  ..+++++.++....+.+++.  .+.+|||+|.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            389999999999999999 99988643  77777777887788888875  47899999988 6543        23457


Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      ++.+|++|+|||+++..++++.. +++.+    .+.|.|+|+||+||.    +.   ...+++.+++. .+++++++||+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~----~~---~~~~~~~~~~~-~~~~~i~iSAk  387 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVV----EK---INEEEIKNKLG-TDRHMVKISAL  387 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSC----CC---CCHHHHHHHHT-CSTTEEEEEGG
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccc----cc---cCHHHHHHHhc-CCCcEEEEECC
Confidence            89999999999999998887643 33333    356778999999972    11   12344444432 45789999999


Q ss_pred             CCcCHHHHHHHHHHHHhC
Q 023335          248 HNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~  265 (283)
                      +|.|++++|++|.+.+..
T Consensus       388 tg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          388 KGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             GTCCHHHHHHHHHHHTHH
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999997663

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.83  E-value=7.2e-20  Score=167.87  Aligned_cols=164  Identities=14%  Similarity=0.127  Sum_probs=115.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccc--cc--ccee------------eeeEEEEEE---CCeEEEEEEEeCCCC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERS--LQ--MAGL------------NLINKTLMV---QGARIAFSIWDVGGD  157 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~--~~--t~~~------------~~~~~~~~~---~~~~~~l~i~Dt~G~  157 (283)
                      ...+||+++|.+++|||||+ ++++......  +.  +.+.            +........   ......+.+|||||+
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            45789999999999999999 9987433211  00  1000            000000000   123368999999999


Q ss_pred             CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc
Q 023335          158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM  237 (283)
Q Consensus       158 ~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~  237 (283)
                      +.|......++..+|++|+|+|+++..++.....|+..+..... .+.|+|+||+|+   .+.+......+++.++.+..
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-~~iivviNK~Dl---~~~~~~~~~~~~i~~~l~~~  161 (403)
T 3sjy_A           86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-KNLIIVQNKVDV---VSKEEALSQYRQIKQFTKGT  161 (403)
T ss_dssp             GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-CCEEEEEECGGG---SCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-CCEEEEEECccc---cchHHHHHHHHHHHHHHHhh
Confidence            99998888899999999999999998777788888877766542 456899999997   22111112234444444333


Q ss_pred             ---CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          238 ---KATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       238 ---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                         +++++++||++|+|++++|+.|.+.+..
T Consensus       162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          162 WAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence               5689999999999999999999987754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.82  E-value=6.6e-20  Score=161.79  Aligned_cols=164  Identities=15%  Similarity=0.093  Sum_probs=115.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCC---------Ccccchh
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHVP  165 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~  165 (283)
                      .+..+|+++|.+|||||||+ ++++..+.  ...+.+..+.....+..++  ..+.+|||+|.+         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            35678999999999999999 99988765  3333222222223333343  568899999987         3445566


Q ss_pred             hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEE
Q 023335          166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFS  244 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~  244 (283)
                      .+++.+|++++|+|.++   +.....|+-+... ..+.|.|+|+||+|+    .. ......+.+.++++.+++ .++++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~----~~-~~~~~~~~l~~l~~~~~~~~~i~i  154 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDN----VQ-EKADLLPHLQFLASQMNFLDIVPI  154 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTT----CC-CHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECccc----Cc-cHHHHHHHHHHHHHhcCcCceEEE
Confidence            78899999999999977   3333334433222 235667899999996    11 122345666777777776 68999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCCcccccc
Q 023335          245 SATHNINVNKIFKFIMAKLFNLPWTVKR  272 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~  272 (283)
                      ||++|.|++++++.+.+.+.+.++....
T Consensus       155 SA~~g~~v~~l~~~i~~~l~~~~~~~~~  182 (301)
T 1ega_A          155 SAETGLNVDTIAAIVRKHLPEATHHFPE  182 (301)
T ss_dssp             CTTTTTTHHHHHHHHHTTCCBCCCSSCT
T ss_pred             ECCCCCCHHHHHHHHHHhCCcCCCCCCc
Confidence            9999999999999999988777665443

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.82  E-value=5.8e-20  Score=171.98  Aligned_cols=158  Identities=13%  Similarity=0.151  Sum_probs=111.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCc----c---c-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhh
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNE----Q---E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI  166 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~----~---~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~  166 (283)
                      ..+..++|+++|..++|||||+ ++++..    .   . +..+.+..+.....+.+++  ..+.+|||||++.|......
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            3456899999999999999999 998776    2   2 2222222333333445555  56889999999998888888


Q ss_pred             hcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc----CC
Q 023335          167 ACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KA  239 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~----~~  239 (283)
                      ++..+|++|+|+|+++   .++++.+.    .+...  ..|.|+|+||+|+   .+.+......+++.++++..    ++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~--~ip~IvviNK~Dl---~~~~~~~~~~~~l~~~l~~~~~~~~~  163 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDHF--NIPIIVVITKSDN---AGTEEIKRTEMIMKSILQSTHNLKNS  163 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT--TCCBCEEEECTTS---SCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc--CCCEEEEEECCCc---ccchhHHHHHHHHHHHHhhhcccccc
Confidence            8999999999999988   44444432    23222  3455899999997   22222233456677777766    57


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          240 TLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      +++++||++|+|+++++++|.+.+.
T Consensus       164 ~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          164 SIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHhhc
Confidence            8999999999999999999999774

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.82  E-value=3.4e-20  Score=166.73  Aligned_cols=121  Identities=20%  Similarity=0.241  Sum_probs=96.6

Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhH--CCCCceEEEeecCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW--NQTAIPILIGTKFD  213 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~----------~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~D  213 (283)
                      .+.+++|||+|++.++.++..|+++++++|+|||+++          .+++++...|++.+...  ..+.|+||+|||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            4779999999999999999999999999999999999          56788888999988764  24566689999999


Q ss_pred             CCCC----------CCCCcccchHHHHHHHHH-----------HcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          214 DFVR----------LPPDLQWTIATQARAYAK-----------AMKATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       214 L~~~----------l~~~~~~~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      |...          +++-...+..+++.+++.           ..++.+++|||+++.||+++|+++.+.+.+.
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            7210          000001234677888876           3567789999999999999999999988653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.81  E-value=1.8e-19  Score=166.92  Aligned_cols=250  Identities=11%  Similarity=0.123  Sum_probs=144.0

Q ss_pred             hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCccc------ccccccCCCCCCCCCCccc
Q 023335            4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR------YQKLTRRSSSESSPAPDTM   77 (283)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~~------~~~~~~~~~~~~~p~p~~~   77 (283)
                      +..++..++..++..++.+|.+.++......+.+.++..--+++++-...-....      +........   .+-+..+
T Consensus        71 ~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~---~~~~iSA  147 (439)
T 1mky_A           71 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFG---EPIPVSA  147 (439)
T ss_dssp             HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSC---SCEECBT
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCC---CEEEEec
Confidence            5566777788888889999999887766666666666544444443331111000      000000000   0111112


Q ss_pred             ccccc--cc-------ccccCCC-CCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECC
Q 023335           78 EAGLV--EL-------SRTFSSG-YDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQG  144 (283)
Q Consensus        78 ~~g~~--~~-------~~~~~~~-~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~  144 (283)
                      ..|..  ..       ....... .+.......+||+++|++|||||||+ ++++..+.  ..+++++.+.....+.++|
T Consensus       148 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g  227 (439)
T 1mky_A          148 EHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG  227 (439)
T ss_dssp             TTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred             cCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence            22210  00       0000000 01001234689999999999999999 99988763  6666666666677888888


Q ss_pred             eEEEEEEEeCCCCCCcccc-----------h-hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecC
Q 023335          145 ARIAFSIWDVGGDSRSFDH-----------V-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF  212 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~-----------~-~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~  212 (283)
                      ..  +.+|||+|..++...           . ..+++.+|++++|+|+++..+.++. .+...+..  ...+.++|+||+
T Consensus       228 ~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~  302 (439)
T 1mky_A          228 RK--YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKW  302 (439)
T ss_dssp             EE--EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECG
T ss_pred             EE--EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECc
Confidence            64  678999998543221           1 2467889999999999987776653 23333332  245668999999


Q ss_pred             CCCCCCCCCcccchHHHH----HHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          213 DDFVRLPPDLQWTIATQA----RAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       213 DL~~~l~~~~~~~~~~~~----~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      |+   ... ......+..    +.++...+++++++||++|.||+++|+.+.+.+.+
T Consensus       303 Dl---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          303 DL---VVH-REKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             GG---STT-GGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cC---CCc-hhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            97   221 111111112    22222335789999999999999999999887644

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=1e-20  Score=175.17  Aligned_cols=154  Identities=15%  Similarity=0.193  Sum_probs=98.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCC--------Ccccchhhhccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACKD  170 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~~~~  170 (283)
                      ..+|+++|.+|||||||+ ++++..+....++.|.+.......+......+.+|||+|++        .+......++++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            368999999999999999 99988765222333433322233333333568899999986        455666778999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN  249 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~  249 (283)
                      +|++|+|+|+++..++.+  .|+..+.. ..+.|++||+||+|+...    .     .+..++. ..++ .++++||++|
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~-~~~~pvilv~NK~D~~~~----~-----~~~~~~~-~lg~~~~~~iSA~~g  149 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILY-RTKKPVVLAVNKLDNTEM----R-----ANIYDFY-SLGFGEPYPISGTHG  149 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHT-TCCSCEEEEEECCCC--------------CCCSSG-GGSSCCCEECBTTTT
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH-HcCCCEEEEEECccCccc----h-----hhHHHHH-HcCCCCeEEEeCcCC
Confidence            999999999998777654  23333222 235677899999996211    0     1111222 3455 7899999999


Q ss_pred             cCHHHHHHHHHHHHhCC
Q 023335          250 INVNKIFKFIMAKLFNL  266 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~~  266 (283)
                      .|++++|+++.+.+.+.
T Consensus       150 ~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             BTHHHHHHHHHHTGGGC
T ss_pred             CChHHHHHHHHHhcCcc
Confidence            99999999999988643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.81  E-value=1.4e-19  Score=156.12  Aligned_cols=162  Identities=14%  Similarity=0.044  Sum_probs=108.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCc-cc-ccccc-ceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch---------
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNE-QE-RSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV---------  164 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~-~~-~~~~t-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---------  164 (283)
                      ...+||+|+|.+|||||||+ ++++.. +. ...++ ++.+.....+..++.  .+.||||||...+....         
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            34689999999999999999 999887 44 33333 444555556666664  57889999987654322         


Q ss_pred             --hhhcccCcEEEEEEECCChhhH-HHHHHHHHHHHhHCCCCceEEEee-cCCCCCCCCCCcccchH-------HHHHHH
Q 023335          165 --PIACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGT-KFDDFVRLPPDLQWTIA-------TQARAY  233 (283)
Q Consensus       165 --~~~~~~ad~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvgn-K~DL~~~l~~~~~~~~~-------~~~~~~  233 (283)
                        ..+++.+|++|+|||+++.... ..+..|+.++.......|+|+|.| |+|+.    ..  ....       ++++.+
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~----~~--~~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN----GG--SLMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT----TC--CHHHHHHHCCCHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC----Cc--cHHHHHHhcchHHHHHH
Confidence              2267899999999999863222 223344444322222346665555 99972    11  1111       345556


Q ss_pred             HHHcCCcE-----EEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          234 AKAMKATL-----FFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       234 ~~~~~~~~-----~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      ++..+..+     +++||++|.|++++|+.|.+.+...+
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            77666433     67999999999999999999887754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.81  E-value=4.5e-20  Score=171.50  Aligned_cols=152  Identities=18%  Similarity=0.251  Sum_probs=105.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch--------hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~  168 (283)
                      .+||+++|.+|||||||+ ++++..+.  ..+++++.++....+.+++..  +.+|||+|...+....        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhhh
Confidence            589999999999999999 99987654  566767677766677788754  6889999986654332        3367


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      +.+|++++|||+++..+... ..|++.+.    ..|.|+|+||+|+.   + .....   ...++.  .+.+++++||++
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~---~-~~~~~---~~~~~~--~~~~~i~iSAkt  367 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLV---E-KQLIT---SLEYPE--NITQIVHTAAAQ  367 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSS---C-GGGST---TCCCCT--TCCCEEEEBTTT
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCC---c-chhhH---HHHHhc--cCCcEEEEECCC
Confidence            89999999999999877655 45666553    35678999999972   1 11110   111111  356899999999


Q ss_pred             CcCHHHHHHHHHHHHhCCc
Q 023335          249 NINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~~~  267 (283)
                      |.|++++|++|.+.+....
T Consensus       368 g~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          368 KQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             TBSHHHHHHHHHHHHTTSS
T ss_pred             CCCHHHHHHHHHHHHhccC
Confidence            9999999999999887654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.80  E-value=8.6e-19  Score=160.94  Aligned_cols=159  Identities=15%  Similarity=0.119  Sum_probs=104.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCc---cc-cccc--cceeeeeEEEEEE-------------C--C----eEEEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNE---QE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW  152 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~---~~-~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i~  152 (283)
                      ..++|+++|..++|||||+ ++.+..   +. +..+  |....+....+..             +  +    ....+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            4689999999999999999 998543   22 2223  4444444333321             1  1    23789999


Q ss_pred             eCCCCCCcccchhhhcccCcEEEEEEECCC----hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHH
Q 023335          153 DVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIAT  228 (283)
Q Consensus       153 Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~----~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~  228 (283)
                      ||||++.|.......+..+|++|+|+|+++    .++++.+..|    .. ....++|+|+||+|+.   .........+
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~-l~~~~iivv~NK~Dl~---~~~~~~~~~~  158 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EI-LGIDKIIIVQNKIDLV---DEKQAEENYE  158 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HH-TTCCCEEEEEECTTSS---CTTTTTTHHH
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HH-cCCCeEEEEEEccCCC---CHHHHHHHHH
Confidence            999999987777777788999999999995    3455544332    22 2233567999999972   2222223456


Q ss_pred             HHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          229 QARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       229 ~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ++.++++..   +++++++||++|+|+++++++|.+.+..
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            777777653   6789999999999999999999987654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.80  E-value=4.9e-19  Score=159.95  Aligned_cols=161  Identities=16%  Similarity=0.165  Sum_probs=110.6

Q ss_pred             eeE-EEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC---------cccchhhh
Q 023335          100 SLK-ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA  167 (283)
Q Consensus       100 ~~K-I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~  167 (283)
                      .++ |+++|.+|||||||+ ++++..+. ..++.++.+.....+.+++.  .+.+|||+|.-.         |.... ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            355 999999999999999 99988765 45555555666778888884  568899999622         22222 24


Q ss_pred             cccCcEEEEEEECCChh--hHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc---CCcE
Q 023335          168 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM---KATL  241 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~---~~~~  241 (283)
                      +..+|++++|+|++++.  +.+.+..|.+.+.... .+.|.|+|+||+|+   ++.. .....+.+..+++.+   +.++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl---~~~~-~~~~~~~~~~l~~~l~~~~~~~  330 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK---INGD-LYKKLDLVEKLSKELYSPIFDV  330 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG---CCSC-HHHHHHHHHHHHHHHCSCEEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC---CCch-HHHHHHHHHHHHHHhcCCCCcE
Confidence            78999999999999887  6666767777666654 34566899999996   3221 111123444455555   2367


Q ss_pred             EEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          242 FFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       242 ~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      +++||+++.|++++++.|.+.+....
T Consensus       331 ~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          331 IPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHHHhcccC
Confidence            88999999999999999998776544

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.80  E-value=6.6e-20  Score=159.62  Aligned_cols=159  Identities=13%  Similarity=0.137  Sum_probs=96.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cc--------cccceeeeeEEEEEECCeEEEEEEEeCCCCCC-------cc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-------SF  161 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~  161 (283)
                      ..+||+|+|.+|+|||||+ ++++.... ..        .+|++.+.....+..++..+.+.+|||||...       +.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            3799999999999999999 87665543 33        45667777666666667778999999999743       22


Q ss_pred             cch-------hhhcc-------------cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335          162 DHV-------PIACK-------------DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  221 (283)
Q Consensus       162 ~~~-------~~~~~-------------~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~  221 (283)
                      .+.       ..|+.             ++|+++++++.++......-..+++.+..   ..|.|+|+||+|+   +...
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~---~~~~  160 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADT---LTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGG---SCHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCC---CCHH
Confidence            222       33333             37799999977653222222345555544   5667899999996   3322


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          222 LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ......+.+.+.....+++++++||++++|+++++++|.+.+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            222224556666777899999999999999999999998765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.79  E-value=7e-20  Score=162.55  Aligned_cols=122  Identities=19%  Similarity=0.237  Sum_probs=94.5

Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhH--CCCCceEEEeecCC
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKW--NQTAIPILIGTKFD  213 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~D  213 (283)
                      .+.+++|||+||+.++.++..||++++++|+|||++          +.+++++...|++.+...  ..+.|+||+|||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            478999999999999999999999999999999665          667788888888887654  24566689999999


Q ss_pred             CCCC----------CCCCcc-cchHHHHHHHHH----------HcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          214 DFVR----------LPPDLQ-WTIATQARAYAK----------AMKATLFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       214 L~~~----------l~~~~~-~~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      |...          +++-.. ....+++.+++.          ..++.+++|||+++.||+++|..+.+.+++..
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            7321          011000 234677777743          44566788999999999999999999998654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.79  E-value=9e-19  Score=149.21  Aligned_cols=163  Identities=12%  Similarity=0.065  Sum_probs=106.9

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccc--cceeeeeEEEEEECCeEEEEEEEeCCCCCC-----------cc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-----------SF  161 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~  161 (283)
                      ....+||+|+|.+|||||||+ ++++..+. ...+  +++.+.....+.+++.  .+.+|||||...           +.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHH
Confidence            345799999999999999999 99998876 4444  4455555566667764  578899999542           33


Q ss_pred             cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhH---CCCCceEEEeecCCCCCCCCCCccc-ch---HHHHHHHH
Q 023335          162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW---NQTAIPILIGTKFDDFVRLPPDLQW-TI---ATQARAYA  234 (283)
Q Consensus       162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~---~~~~~~ilvgnK~DL~~~l~~~~~~-~~---~~~~~~~~  234 (283)
                      .....+++++|++|+|+|+++....  ...|+..+...   ....|.+||+||+|+.   ...... ..   .+.+++++
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~---~~~~~~~~i~~~~~~l~~l~  178 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDL---GDTNLHDYLREAPEDIQDLM  178 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccC---CcccHHHHHHhchHHHHHHH
Confidence            3344456788999999999765441  12333333321   1234678999999972   221111 11   24678888


Q ss_pred             HHcCCcEEEEcCCCC-----cCHHHHHHHHHHHHhCC
Q 023335          235 KAMKATLFFSSATHN-----INVNKIFKFIMAKLFNL  266 (283)
Q Consensus       235 ~~~~~~~~e~Sa~~~-----~~v~~lf~~l~~~i~~~  266 (283)
                      +..+..|+.+++..+     .++.++|+.+.+.+.+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            899988888877644     68999999988877543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.4e-19  Score=148.52  Aligned_cols=108  Identities=14%  Similarity=0.123  Sum_probs=84.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcccc----ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhccc--
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD--  170 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--  170 (283)
                      ...+||+++|++|||||||+ ++++..+..    ..++++.++         ..+.+.+|||+|++.+...+..++++  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            34689999999999999999 999887653    222332222         34568899999999998888888876  


Q ss_pred             --CcEEEEEEECC-ChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCC
Q 023335          171 --AVAILFMFDLT-SRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDD  214 (283)
Q Consensus       171 --ad~iilv~D~~-~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL  214 (283)
                        +|++|+|||++ +.+++..+..|+..+....     .+.|.++|+||+|+
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence              89999999999 8999999998888876542     35566899999997

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.79  E-value=9.2e-19  Score=167.09  Aligned_cols=157  Identities=11%  Similarity=0.136  Sum_probs=111.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCc--cc---------ccc---ccceeeeeEEEEEE-----CCeEEEEEEEeCCCCCC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR  159 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~--~~---------~~~---~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~  159 (283)
                      ..+|+|+|..++|||||+ +++...  ..         ...   .+.|.++....+.+     ++..+.+++|||||++.
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            468999999999999999 997632  11         111   12344443333332     56678999999999999


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA  239 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~  239 (283)
                      |......+++.+|++|+|+|+++..+++....|+.....   +.|+|+|+||+|+.    ...   ..+...++.+.+++
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~----~a~---~~~v~~ei~~~lg~  153 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLP----AAD---PERVAEEIEDIVGI  153 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTST----TCC---HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcc----ccc---HHHHHHHHHHHhCC
Confidence            999999999999999999999998888888888776543   45668999999962    221   23445566666776


Q ss_pred             ---cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          240 ---TLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       240 ---~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                         .++++||++|.||+++|+++.+.+...
T Consensus       154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          154 DATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             CcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence               489999999999999999999887543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.79  E-value=4.6e-20  Score=166.71  Aligned_cols=161  Identities=9%  Similarity=0.119  Sum_probs=94.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC-cccccc---------ccceeeeeEEEEEECCeEEEEEEEeCCCC-------CCc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN-EQERSL---------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS  160 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~-~~~~~~---------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~  160 (283)
                      ..++|+|+|++|+|||||+ ++.+. .+...+         +|.+.++....+..++..+.+.+|||+|.       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            4689999999999999999 86554 343221         35555555455555677789999999998       777


Q ss_pred             ccchh-------hhcccCcEE-----------EEEEECCC-hhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          161 FDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       161 ~~~~~-------~~~~~ad~i-----------ilv~D~~~-~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      ..+..       .|++.++++           +++|++++ ..++..+. .|+..+   ....|+|+|+||+|+   +..
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl---~~~  189 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADT---LTL  189 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSS---SCH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCC---CCH
Confidence            77776       677665544           47777776 56666665 455544   345667899999996   221


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      .......+++.++++.+++++|++||+++.| ++.|.++.+.+.+.
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            1111112577888888899999999999999 88888888877654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.78  E-value=3.6e-19  Score=158.54  Aligned_cols=121  Identities=18%  Similarity=0.255  Sum_probs=93.0

Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhH--CCCCceEEEeecC
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKW--NQTAIPILIGTKF  212 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~  212 (283)
                      ..+.+++|||+|++.++.++..||++++++|+|||++          +.+++++...|+..+...  ..+.|+||+|||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            3477999999999999999999999999999999999          778899988888888764  2455668999999


Q ss_pred             CCCCC----------CCCCcccchHHHHHHHHHH-c--------------------------CCcEEEEcCCCCcCHHHH
Q 023335          213 DDFVR----------LPPDLQWTIATQARAYAKA-M--------------------------KATLFFSSATHNINVNKI  255 (283)
Q Consensus       213 DL~~~----------l~~~~~~~~~~~~~~~~~~-~--------------------------~~~~~e~Sa~~~~~v~~l  255 (283)
                      ||...          +++-......+++.+++.. +                          ++.+++|||++..||+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            97310          1111111124455444432 2                          356788999999999999


Q ss_pred             HHHHHHHHhC
Q 023335          256 FKFIMAKLFN  265 (283)
Q Consensus       256 f~~l~~~i~~  265 (283)
                      |+.+.+.+++
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999987

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.78  E-value=2.4e-18  Score=158.13  Aligned_cols=161  Identities=13%  Similarity=0.139  Sum_probs=110.1

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCc---cc-cccc--cceeeeeEEEEEE-------------C--C----eEEEEE
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNE---QE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFS  150 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~---~~-~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~  150 (283)
                      ....++|+++|..++|||||+ ++++..   +. +..+  |....+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            345799999999999999999 998542   22 2223  4444443333321             1  1    137899


Q ss_pred             EEeCCCCCCcccchhhhcccCcEEEEEEECCCh----hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       151 i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      +|||||++.|.......+..+|++|+|+|+++.    ++++.+..|    .... ..+.|+|+||+|+   .........
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~-~~~iivviNK~Dl---~~~~~~~~~  158 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIG-QKNIIIAQNKIEL---VDKEKALEN  158 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHT-CCCEEEEEECGGG---SCHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcC-CCcEEEEEECccC---CCHHHHHHH
Confidence            999999998877777777889999999999853    445444332    2222 2345789999996   221111123


Q ss_pred             HHHHHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          227 ATQARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       227 ~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      .+++.++++.   .+++++++||++|+|+++++++|.+.+..
T Consensus       159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            4556666654   36789999999999999999999987654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.78  E-value=1.4e-20  Score=177.26  Aligned_cols=160  Identities=12%  Similarity=0.059  Sum_probs=113.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      +..+|+++|.+++|||||+ ++.+..+. ...++++.++....+.+++ ...+.||||||++.|..+...+++.+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            3578999999999999999 99988877 5555555555444444422 2357899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHH---HHHc--CCcEEEEcCCCCcC
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY---AKAM--KATLFFSSATHNIN  251 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~---~~~~--~~~~~e~Sa~~~~~  251 (283)
                      |||+++....+....| ..+..  .+.|+|+|+||+|+...    ......++...+   +..+  .++++++||++|.|
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~----~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G  154 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEA----DPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGEN  154 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTT----SCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred             EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEeccccccc----chHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999987665554333 33332  24566899999997321    111112222221   1222  24788999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 023335          252 VNKIFKFIMAKLFNL  266 (283)
Q Consensus       252 v~~lf~~l~~~i~~~  266 (283)
                      ++++|+++...+...
T Consensus       155 I~eLle~I~~l~~~~  169 (537)
T 3izy_P          155 MMALAEATIALAEML  169 (537)
T ss_dssp             SHHHHHHHHHHHTTC
T ss_pred             chhHHHHHHHhhhcc
Confidence            999999999877533

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.78  E-value=2.4e-19  Score=168.01  Aligned_cols=156  Identities=15%  Similarity=0.090  Sum_probs=98.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--c----------------------------ccccceeeeeEEEEEECCeE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--R----------------------------SLQMAGLNLINKTLMVQGAR  146 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~----------------------------~~~t~~~~~~~~~~~~~~~~  146 (283)
                      ...+||+++|.+++|||||+ ++++....  .                            .....|.++......++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            34799999999999999999 99765111  0                            00011333333344444455


Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHH-----HHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI-----VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD  221 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~-----~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~  221 (283)
                      ..+.||||||+++|......+++.+|++|+|||+++.+++..+     ..+...+.......++|||+||+|+... ...
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~-~~~  189 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-SQQ  189 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT-CHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc-hHH
Confidence            7789999999999999999999999999999999987654332     1111122222223456899999997210 001


Q ss_pred             cccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023335          222 LQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK  254 (283)
Q Consensus       222 ~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~  254 (283)
                      ......+++..+.+..+     ++++++||++|+|+++
T Consensus       190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            11122444555555544     5789999999999975

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.78  E-value=3.9e-20  Score=171.22  Aligned_cols=156  Identities=13%  Similarity=0.127  Sum_probs=106.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC--ccccc------------------------------cccceeeeeEEEEEECCe
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN--EQERS------------------------------LQMAGLNLINKTLMVQGA  145 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~  145 (283)
                      ..+||+++|..++|||||+ +++..  .+...                              ...+..+..  ...++..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~~   82 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFETK   82 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEecC
Confidence            4689999999999999999 99864  22210                              111122222  2223334


Q ss_pred             EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhH------CCCCceEEEeecCCCCCCC-
Q 023335          146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW------NQTAIPILIGTKFDDFVRL-  218 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~------~~~~~~ilvgnK~DL~~~l-  218 (283)
                      ...+.+|||||+++|......+++.+|++|+|||+++ .+|+++..|..+.+.+      ....+.|+|+||+|+.... 
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            4678999999999998888889999999999999998 7888765554443332      1223457999999972110 


Q ss_pred             CCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHHH
Q 023335          219 PPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf~  257 (283)
                      .++......++++++++.++     ++++++||++|+|+.++++
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            00111234677888888876     6799999999999986554

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.78  E-value=2e-18  Score=159.87  Aligned_cols=156  Identities=10%  Similarity=0.055  Sum_probs=103.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--------------------------------cccccceeeeeEEEEEECC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQG  144 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~  144 (283)
                      ...++|+++|.+++|||||+ +++...-.                                +..+.++.+.....+..+ 
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~-   93 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE-   93 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence            34789999999999999999 99543110                                011223344433344444 


Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhh---HH---HHHHHHHHHHhHCCCCc-eEEEeecCCCCCC
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT---LN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVR  217 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~  217 (283)
                       ...+.||||||+++|......+++.+|++|+|+|+++...   |+   .....+..+..  ...+ .|+|+||+|+...
T Consensus        94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence             4578999999999998888889999999999999988532   22   11222222222  2345 5799999996210


Q ss_pred             -CCCCcccchHHHHHHHHHHcCC------cEEEEcCCCCcCHHHHHH
Q 023335          218 -LPPDLQWTIATQARAYAKAMKA------TLFFSSATHNINVNKIFK  257 (283)
Q Consensus       218 -l~~~~~~~~~~~~~~~~~~~~~------~~~e~Sa~~~~~v~~lf~  257 (283)
                       ..........+++..+++.+++      +++++||++|.|++++++
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             0011122335666677766654      689999999999999765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.77  E-value=2.4e-18  Score=164.03  Aligned_cols=158  Identities=12%  Similarity=0.201  Sum_probs=113.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCc--cc---------cccc---cceeeeeE--EEEEE---CCeEEEEEEEeCCCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNE--QE---------RSLQ---MAGLNLIN--KTLMV---QGARIAFSIWDVGGDS  158 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~---------~~~~---t~~~~~~~--~~~~~---~~~~~~l~i~Dt~G~~  158 (283)
                      ...+|+++|..++|||||+ +++...  +.         +..+   ..|.++..  ..+.+   ++..+.+++|||||++
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            3579999999999999999 997531  11         0000   12222221  12222   5667899999999999


Q ss_pred             CcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC
Q 023335          159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK  238 (283)
Q Consensus       159 ~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~  238 (283)
                      .|......+++.+|++|+|+|+++..+++....|+.....   +.|+|+|+||+|+.    ...   ..+...++.+.++
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~ipiIvviNKiDl~----~a~---~~~v~~el~~~lg  154 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ---DLVIIPVINKIDLP----SAD---VDRVKKQIEEVLG  154 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---TCEEEEEEECTTST----TCC---HHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC---CCCEEEEEeccCcc----ccC---HHHHHHHHHHhhC
Confidence            9988888899999999999999999888888888776542   45668999999962    221   2344556666667


Q ss_pred             C---cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          239 A---TLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       239 ~---~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      +   .++++||++|.||+++|+++++.+...
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            6   489999999999999999999987643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.76  E-value=5.5e-19  Score=162.12  Aligned_cols=161  Identities=11%  Similarity=0.083  Sum_probs=113.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcC--------ccccc--------cccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGN--------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~--------~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ...+||+++|.+++|||||+ ++++.        .+...        ..+.|.++....+.++.....+.+|||||+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45799999999999999999 99873        22111        012233333344445444567899999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  238 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~  238 (283)
                      ......+++.+|++|+|+|+++.... ....|+..+...  ..| +|+|+||+|+.   .+.. .....++++++++.++
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--~ip~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMV---DDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEECcccc---CcHHHHHHHHHHHHHHHHHhc
Confidence            88888889999999999999987543 335566655543  345 46899999972   1111 1123456777887776


Q ss_pred             -----CcEEEEcCCCCcC------------------HHHHHHHHHHHHh
Q 023335          239 -----ATLFFSSATHNIN------------------VNKIFKFIMAKLF  264 (283)
Q Consensus       239 -----~~~~e~Sa~~~~~------------------v~~lf~~l~~~i~  264 (283)
                           ++++++||++|.|                  +.++++.+.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence                 6799999999987                  7788888777654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=2.3e-19  Score=166.99  Aligned_cols=155  Identities=15%  Similarity=0.178  Sum_probs=99.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCC--------CCCcccchhhhc
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIAC  168 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--------~~~~~~~~~~~~  168 (283)
                      +...+|+|+|.+|||||||+ ++++..+....++.|.+.......+......+.+|||+|        ++.+......++
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            34679999999999999999 999987763333445554444555554556789999999        555666778889


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSAT  247 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~  247 (283)
                      +.+|++|+|+|..+..+..  ..|+.++... .+.|+|||+||+|+.    ..     .....++. ..+. ..+++||+
T Consensus       101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~~-~~~pvilV~NK~D~~----~~-----~~~~~e~~-~lg~~~~~~iSA~  167 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAA--DEEVAKILYR-TKKPVVLAVNKLDNT----EM-----RANIYDFY-SLGFGEPYPISGT  167 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHH--HHHHHHHHTT-CCSCEEEEEECC------------------CCSG-GGSSSSEEECCTT
T ss_pred             hhCCEEEEEEeCCCCCChH--HHHHHHHHHH-cCCCEEEEEECccch----hh-----hhhHHHHH-HcCCCceEEeecc
Confidence            9999999999987643332  3343333322 356678999999962    11     11111111 2233 56799999


Q ss_pred             CCcCHHHHHHHHHHHHhC
Q 023335          248 HNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~  265 (283)
                      +|.|++++|+.+.+.+..
T Consensus       168 ~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          168 HGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TCTTHHHHHHHHHTTGGG
T ss_pred             cccchHHHHHHHHhhccc
Confidence            999999999999887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.76  E-value=3e-18  Score=142.42  Aligned_cols=157  Identities=13%  Similarity=0.153  Sum_probs=99.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----------cccchhhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIA  167 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~  167 (283)
                      ..+|+++|.+|||||||+ ++++..+. ...++.|.......+.+++   .+.+|||+|...          +......+
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  102 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY  102 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence            579999999999999999 99887754 3344556554444444444   467899999753          22222334


Q ss_pred             c---ccCcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--Cc
Q 023335          168 C---KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--AT  240 (283)
Q Consensus       168 ~---~~ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~  240 (283)
                      +   ..++++++++|+++..++..  +..|+..     ...+.++|+||+|+   ++...+....+.+..++...+  +.
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~---~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADK---LASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG---SCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccC---CCchhHHHHHHHHHHHHHhcCCCCc
Confidence            4   57899999999998766542  3344432     23455788999996   332222222455666666654  46


Q ss_pred             EEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          241 LFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       241 ~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      ++++||+++.|++++++.|.+.+.+.+
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~~~  201 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSEMQ  201 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence            778999999999999999988876544

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.76  E-value=1.9e-18  Score=152.44  Aligned_cols=131  Identities=11%  Similarity=0.034  Sum_probs=105.3

Q ss_pred             HhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh-hHHHHH
Q 023335          115 SFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIV  190 (283)
Q Consensus       115 SLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~  190 (283)
                      +|+ +++.+.|.  .+.||+|..+. ..+..++   .+++||+  +++|..+++.|++++|++|+|||+++++ +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            799 99999997  45568885543 3332232   6889999  9999999999999999999999999997 799999


Q ss_pred             HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHH
Q 023335          191 GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIM  260 (283)
Q Consensus       191 ~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~  260 (283)
                      .|+..++.  .+.|++||+||+||    .+.  .. .+++.++++.++  +.++++||++|.||+++|..+.
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL----~~~--~~-v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDL----YDE--DD-LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGG----CCH--HH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHc----CCc--hh-HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            99998865  35677899999996    221  11 245777787777  8999999999999999998765

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.75  E-value=1.4e-18  Score=160.76  Aligned_cols=154  Identities=14%  Similarity=0.088  Sum_probs=103.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcc---ccc---------c-ccc-------------------eeeeeEEEEEECC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ---ERS---------L-QMA-------------------GLNLINKTLMVQG  144 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~---~~~---------~-~t~-------------------~~~~~~~~~~~~~  144 (283)
                      ...+||+++|..++|||||+ +++++..   ...         . .|+                   |.........+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            45699999999999999999 9976541   110         1 121                   1111111222333


Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-  223 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-  223 (283)
                      ....+.+|||||+++|......++..+|++|+|+|+++....+ ...|+..+... ...+.|+|+||+|+.   ..+.. 
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~---~~~~~~  176 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLN---GFDERV  176 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTT---TSCHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCC---cccHHH
Confidence            3467899999999999888888899999999999999865333 34455444432 222457899999972   21111 


Q ss_pred             -cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023335          224 -WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF  256 (283)
Q Consensus       224 -~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf  256 (283)
                       ....+++.++++.++     ++++++||++|.|++++|
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence             123567778888887     678999999999999853

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.75  E-value=5.3e-18  Score=161.91  Aligned_cols=160  Identities=13%  Similarity=0.089  Sum_probs=105.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccc-----cceeeeeEEEE------------EECCeEEEEEEEeCCCCCCc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-----MAGLNLINKTL------------MVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-----t~~~~~~~~~~------------~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      +..+|+++|..++|||||+ ++++..+....+     +.+..+.....            .++.....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            4679999999999999999 998766543222     22322211100            00011125899999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-----------ccch
Q 023335          161 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-----------QWTI  226 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-----------~~~~  226 (283)
                      ..+...+++.+|++|+|||+++   +++++.+..    ++.  .+.|.|+++||+|+........           ....
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            9999999999999999999999   667665442    222  2456789999999743221110           0000


Q ss_pred             HH-------HHHHHHHHcC---------------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          227 AT-------QARAYAKAMK---------------ATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       227 ~~-------~~~~~~~~~~---------------~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      .+       +........+               ++++++||++|.|+++++++|...+.
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            11       1111112222               37899999999999999999998764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.75  E-value=1.7e-18  Score=158.45  Aligned_cols=160  Identities=11%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCc-------cccc--c------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNE-------QERS--L------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  163 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~-------~~~~--~------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  163 (283)
                      .+||+++|..++|||||+ ++++..       +...  .      ...|.+.....+.++.....+.+|||||+++|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            689999999999999999 998641       1100  0      01233332233344444567889999999998888


Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC---
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK---  238 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~---  238 (283)
                      ...+++.+|++|+|+|+++....+....| ..+...  ..| .|+|+||+|+.   .+.. .....++++++++.++   
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAV---QDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGC---SCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccC---CCHHHHHHHHHHHHHHHHHcCCCc
Confidence            88889999999999999986544443333 444332  345 36899999962   1111 1123567778888776   


Q ss_pred             --CcEEEEcCCCCcC----------HHHHHHHHHHHHhC
Q 023335          239 --ATLFFSSATHNIN----------VNKIFKFIMAKLFN  265 (283)
Q Consensus       239 --~~~~e~Sa~~~~~----------v~~lf~~l~~~i~~  265 (283)
                        ++++++||++|.|          ++++|+.|.+.+..
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence              5899999999775          89999998887653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.75  E-value=4.6e-18  Score=160.44  Aligned_cols=111  Identities=12%  Similarity=0.114  Sum_probs=80.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc------------------Cccccccc---cceeee--eEEEEEECCeEEEEEEEeC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG------------------NEQERSLQ---MAGLNL--INKTLMVQGARIAFSIWDV  154 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~------------------~~~~~~~~---t~~~~~--~~~~~~~~~~~~~l~i~Dt  154 (283)
                      ...+|+|+|.+|+|||||+ +++.                  ..+....+   ..|.++  ....+...  .+.+++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence            3579999999999999999 9961                  11111111   112222  22334444  467899999


Q ss_pred             CCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       155 ~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      ||++.|......+++.+|++|+|+|+++..+.+....|. .+...  +.|.|+|+||+|+
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl  146 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDR  146 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTS
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCC
Confidence            999999999999999999999999999987777766553 33332  4566899999997

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.75  E-value=3.4e-19  Score=166.22  Aligned_cols=157  Identities=11%  Similarity=0.051  Sum_probs=91.3

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhc--Ccccc-------------------------c-----cccceeeeeEEEEEECC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVG--NEQER-------------------------S-----LQMAGLNLINKTLMVQG  144 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~--~~~~~-------------------------~-----~~t~~~~~~~~~~~~~~  144 (283)
                      ...++|+++|..++|||||+ +++.  +.+.+                         .     ......+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45789999999999999999 9864  22210                         0     00111111112333343


Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh---hhHHHHHHHHHHHHhH-CCCCc-eEEEeecCCCCCCC-
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR---CTLNSIVGWYSEARKW-NQTAI-PILIGTKFDDFVRL-  218 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~---~s~~~~~~~~~~i~~~-~~~~~-~ilvgnK~DL~~~l-  218 (283)
                        ..+.||||||+++|......+++.+|++|+|+|+++.   .+|+....|.+.+... ....| +|||+||+|+...- 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              5689999999999998888889999999999999986   3444322333333222 12344 57999999972110 


Q ss_pred             CCCcccchHHHHHHHHHHc-C------CcEEEEcCCCCcCHHHHH
Q 023335          219 PPDLQWTIATQARAYAKAM-K------ATLFFSSATHNINVNKIF  256 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~-~------~~~~e~Sa~~~~~v~~lf  256 (283)
                      ..+....+.+++.++++.. +      ++++++||++|.|+.++|
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            0111123456677777776 4      568999999999998865

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.8e-18  Score=164.64  Aligned_cols=156  Identities=14%  Similarity=0.104  Sum_probs=100.0

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cc-------------------------------cccceeeeeEEEEEEC
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RS-------------------------------LQMAGLNLINKTLMVQ  143 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~-------------------------------~~t~~~~~~~~~~~~~  143 (283)
                      ....+||+++|.+|+|||||+ ++++.... ..                               .+.+..+.....+.. 
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence            345799999999999999999 99866322 11                               011222222223333 


Q ss_pred             CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHHHHHHHHHHHHhH-CCCCc-eEEEeecCCCCCCC
Q 023335          144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGWYSEARKW-NQTAI-PILIGTKFDDFVRL  218 (283)
Q Consensus       144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~~~~~~~~~i~~~-~~~~~-~ilvgnK~DL~~~l  218 (283)
                       ....+.||||||+++|......+++.+|++|+|+|+++..   +|.....+...+... ....+ +|||+||+|+... 
T Consensus       243 -~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~-  320 (611)
T 3izq_1          243 -HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-  320 (611)
T ss_dssp             -SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT-
T ss_pred             -CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch-
Confidence             3467899999999999888888999999999999998742   111111112211111 12334 5789999997210 


Q ss_pred             CCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023335          219 PPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI  255 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~l  255 (283)
                      .........+++..++...+     ++++++||++|.||.++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            00111122455666666554     47999999999999876

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.73  E-value=1.1e-17  Score=151.60  Aligned_cols=146  Identities=7%  Similarity=-0.054  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      +|+++|.+++|||||+ +++.     .-.|....  ...  +......+.+|||||+++|.......++.+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~-----~giTi~~~--~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK-----KGTSSDIT--MYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE-----EEEESSSE--EEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHh-----CCEEEEee--EEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            9999999999999999 9981     11122222  223  33334568999999999998777778899999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhHCCCCce-EEEee-cCCCCCCCCCCcc-cchHHHHHHHHHHcC---CcEEE--EcCCC---C
Q 023335          181 TSRCTLNSIVGWYSEARKWNQTAIP-ILIGT-KFDDFVRLPPDLQ-WTIATQARAYAKAMK---ATLFF--SSATH---N  249 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgn-K~DL~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~e--~Sa~~---~  249 (283)
                      + ...+....+|+..+...  ..|. |+++| |+|+     +... ....++++++++..+   +++++  +||++   +
T Consensus        93 ~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-----~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g  164 (370)
T 2elf_A           93 P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-----HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPF  164 (370)
T ss_dssp             T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-----CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTT
T ss_pred             C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-----CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCC
Confidence            4 44555666676666543  3455 78888 9994     2111 112356666666554   68999  99999   9


Q ss_pred             cCHHHHHHHHHHHHhC
Q 023335          250 INVNKIFKFIMAKLFN  265 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~  265 (283)
                      +|++++++.|.+.+..
T Consensus       165 ~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          165 EGVDELKARINEVAEK  180 (370)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhccc
Confidence            9999999999887643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.72  E-value=2e-18  Score=160.60  Aligned_cols=153  Identities=9%  Similarity=0.066  Sum_probs=101.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcC--cccc------------------------c------cccceeeeeEEEEEECC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGN--EQER------------------------S------LQMAGLNLINKTLMVQG  144 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~--~~~~------------------------~------~~t~~~~~~~~~~~~~~  144 (283)
                      ...++|+++|.+++|||||+ ++++.  .+..                        .      ......+.....+  +.
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~--~~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF--ET   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE--EC
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE--ec
Confidence            45799999999999999999 99864  1110                        0      0111222222233  33


Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHH---HHHHHHHHHHhHCCCCc-eEEEeecCCCCCC
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVR  217 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~  217 (283)
                      ....+.||||||+++|......++..+|++|+|+|+++..   +|+   ....++..+..  ...+ +|+|+||+|+...
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccC
Confidence            4467999999999999888888999999999999999753   332   22223333322  2334 5789999997210


Q ss_pred             CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023335          218 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI  255 (283)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~l  255 (283)
                       +++......+++.++++.++     ++++++||++|+|+.++
T Consensus       161 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 -DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             -CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence             01111234567777777776     58999999999999754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.72  E-value=5e-19  Score=165.39  Aligned_cols=155  Identities=11%  Similarity=0.130  Sum_probs=104.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      +..+|+++|..++|||||+ ++.+..+. ...+++..+.....+.+++  ..+.||||||++.|..++..++..+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            4578999999999999999 99887665 3333333333222333444  357899999999999999999999999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcC
Q 023335          177 MFDLTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNIN  251 (283)
Q Consensus       177 v~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~  251 (283)
                      |||+++.   ++++.+    ..+..  .+.|+|+++||+|+...-++.-.... .+...+++.++  ++++++||++|.|
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l-~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNEL-SQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCC-CCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EeecccCccHHHHHHH----HHHHh--cCceEEEEEEeccccccCHHHHHHHH-HHhhhhHHHhCCCccEEEEeeeeccC
Confidence            9999884   444332    22222  24567899999997421111000000 00001122233  6899999999999


Q ss_pred             HHHHHHHHHHH
Q 023335          252 VNKIFKFIMAK  262 (283)
Q Consensus       252 v~~lf~~l~~~  262 (283)
                      ++++|+++...
T Consensus       154 I~eLle~I~~~  164 (501)
T 1zo1_I          154 IDELLDAILLQ  164 (501)
T ss_dssp             CTTHHHHTTTT
T ss_pred             cchhhhhhhhh
Confidence            99999998753

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.72  E-value=2.1e-18  Score=152.16  Aligned_cols=162  Identities=9%  Similarity=0.108  Sum_probs=87.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC-ccc-ccc--------ccceeeeeEEEEEECCeEEEEEEEeCCCC-------CCc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN-EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS  160 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~-~~~-~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~  160 (283)
                      ..++|+|+|++|||||||+ ++.+. .+. ...        ++.+.......+..++....+.+||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4689999999999999999 87664 443 221        12222222222233455678999999998       666


Q ss_pred             ccchh-------hhcccCc-------------EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          161 FDHVP-------IACKDAV-------------AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       161 ~~~~~-------~~~~~ad-------------~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      ..+..       .++++.+             +++++.+.+ ..+|+.+.  .+.++......+.++|+||+|+   ...
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~--~~~l~~l~~~~~iilV~~K~Dl---~~~  170 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLD--VAFMKAIHNKVNIVPVIAKADT---LTL  170 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHH--HHHHHHHTTTSCEEEEECCGGG---SCH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHH--HHHHHHHHhcCCEEEEEEeCCC---CCH
Confidence            66554       5554333             333333322 22344433  1334444445567899999996   221


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      .......+++.++++.+++.+|++||+++ |++++|..+.+.+.+..
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            11122357888999999999999999999 99999999999886543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.72  E-value=8.7e-18  Score=150.99  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=92.9

Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhH--CCCCceEEEeecC
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKW--NQTAIPILIGTKF  212 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~  212 (283)
                      ..+.+++|||+|++.|+.++..|+++++++|+|||++          +.++|++...|++.+...  .++.|+||||||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            6789999999999999999999999999999999998          788999999999988764  3456668999999


Q ss_pred             CCCCC-C-----------CCCc----ccchHHHHHHHHHH----------------cCCcEEEEcCCCCcCHHHHHHHHH
Q 023335          213 DDFVR-L-----------PPDL----QWTIATQARAYAKA----------------MKATLFFSSATHNINVNKIFKFIM  260 (283)
Q Consensus       213 DL~~~-l-----------~~~~----~~~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~lf~~l~  260 (283)
                      ||..+ +           ++-.    .....+++.+++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            97321 0           0000    01124666776443                123468999999999999999999


Q ss_pred             HHHhCC
Q 023335          261 AKLFNL  266 (283)
Q Consensus       261 ~~i~~~  266 (283)
                      +.+.+.
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.72  E-value=1.9e-17  Score=150.63  Aligned_cols=133  Identities=18%  Similarity=0.215  Sum_probs=99.9

Q ss_pred             cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhH
Q 023335          130 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW  199 (283)
Q Consensus       130 t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~----------~~s~~~~~~~~~~i~~~  199 (283)
                      |+|++.  ..+.+++  +.+++|||+|++.++.++..||++++++|||||+++          .++|+++..|++.+...
T Consensus       204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            445544  3555654  789999999999999999999999999999999999          89999999999998875


Q ss_pred             --CCCCceEEEeecCCCCCC-C---C-C-------C-------------cccchHHHHHHHH-----HH--------cCC
Q 023335          200 --NQTAIPILIGTKFDDFVR-L---P-P-------D-------------LQWTIATQARAYA-----KA--------MKA  239 (283)
Q Consensus       200 --~~~~~~ilvgnK~DL~~~-l---~-~-------~-------------~~~~~~~~~~~~~-----~~--------~~~  239 (283)
                        ..+.|+||||||+||... +   . +       -             ......+++..|+     +.        .++
T Consensus       280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~  359 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  359 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred             ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence              345666899999997311 0   0 0       0             0000135555553     22        245


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          240 TLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      .+++|||+++.||+++|.++.+.+.+.
T Consensus       360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          360 YPHFTCAVDTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence            677899999999999999998887654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.70  E-value=1.8e-17  Score=165.76  Aligned_cols=162  Identities=10%  Similarity=0.074  Sum_probs=111.4

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCc-------ccc--------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNE-------QER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~-------~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ....+||+++|..++|||||+ ++++..       +..        ...+.|+++....+.++.....+.||||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            445799999999999999999 998641       100        0113344433333444455567899999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK  238 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~  238 (283)
                      ......+++.+|++|+|+|+++....+ ...|+..+...  +.| +|||+||+|+.   .+.. ...+.+++.++++.++
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv---~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMV---DDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccc---cchhhHHHHHHHHHHHHHhcc
Confidence            888888899999999999999864333 33455555443  345 47899999972   1111 1123567778888776


Q ss_pred             -----CcEEEEcCCCC--------cCHHHHHHHHHHHHh
Q 023335          239 -----ATLFFSSATHN--------INVNKIFKFIMAKLF  264 (283)
Q Consensus       239 -----~~~~e~Sa~~~--------~~v~~lf~~l~~~i~  264 (283)
                           ++++++||++|        .|++++|+.|.+.+.
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence                 58999999999        579999999887664

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.69  E-value=6.1e-18  Score=148.39  Aligned_cols=157  Identities=14%  Similarity=0.099  Sum_probs=96.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-------ccccc----------------------ceee--------------
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-------RSLQM----------------------AGLN--------------  134 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-------~~~~t----------------------~~~~--------------  134 (283)
                      ..+||+|+|.+|||||||+ ++++..+.       ...|+                      +..+              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999 99998864       11122                      0000              


Q ss_pred             -------eeEEEEEECC-eEEEEEEEeCCCCCC-------------cccchhhhcccCcEEE-EEEECCChhhHHHHHHH
Q 023335          135 -------LINKTLMVQG-ARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAIL-FMFDLTSRCTLNSIVGW  192 (283)
Q Consensus       135 -------~~~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii-lv~D~~~~~s~~~~~~~  192 (283)
                             .....+.+.+ ....+.+|||||...             +..+...|++.++.+| +|+|+++..+..+...|
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                   0000111100 125689999999642             3445667888888776 79999876554444445


Q ss_pred             HHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc--C-CcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          193 YSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--K-ATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       193 ~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--~-~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      +..+..  .+.|.++|+||+|+.   ... . ...+.++......  + .+++++||++|.|++++|+.+.+.
T Consensus       185 ~~~~~~--~~~~~i~V~NK~Dl~---~~~-~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          185 AKEVDP--QGQRTIGVITKLDLM---DEG-T-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHCT--TCSSEEEEEECGGGS---CTT-C-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHhCC--CCCeEEEEEEccccC---CCC-c-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            555432  245668999999972   221 1 1122221100011  2 256779999999999999998873

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.68  E-value=6.5e-17  Score=145.79  Aligned_cols=134  Identities=13%  Similarity=0.149  Sum_probs=94.8

Q ss_pred             ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCC----------hhhHHHHHHHHHHHHh
Q 023335          129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARK  198 (283)
Q Consensus       129 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~----------~~s~~~~~~~~~~i~~  198 (283)
                      +|+|++.  ..+.+++  +.+++|||+|++.++..+..|+++++++|||||+++          .++|++...|+..+..
T Consensus       187 ~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~  262 (362)
T 1zcb_A          187 PTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN  262 (362)
T ss_dssp             CCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             CccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence            3556553  3455554  779999999999999999999999999999999999          7799999999998876


Q ss_pred             H--CCCCceEEEeecCCCCCC----------CCCCccc-chHHHHHHHHH-----------HcCCcEEEEcCCCCcCHHH
Q 023335          199 W--NQTAIPILIGTKFDDFVR----------LPPDLQW-TIATQARAYAK-----------AMKATLFFSSATHNINVNK  254 (283)
Q Consensus       199 ~--~~~~~~ilvgnK~DL~~~----------l~~~~~~-~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~v~~  254 (283)
                      .  ..+.|+||++||+||..+          +++-... ...+++.+++.           ..++.+++|||+++.||++
T Consensus       263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~  342 (362)
T 1zcb_A          263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL  342 (362)
T ss_dssp             CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred             chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence            4  345666899999997311          0100011 33567776652           3457788999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|+++.+.+.+.
T Consensus       343 vF~~v~~~i~~~  354 (362)
T 1zcb_A          343 VFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.68  E-value=4.8e-18  Score=162.50  Aligned_cols=152  Identities=12%  Similarity=0.081  Sum_probs=81.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc--------------------------------cccccceeeeeEEEEEEC
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQ  143 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~  143 (283)
                      ....++|+++|.+++|||||+ +|+...-.                                +..+.++.+..  ...+.
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~--~~~~~  251 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA--STTFE  251 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEee--EEEEE
Confidence            345689999999999999999 99642110                                00112222222  22233


Q ss_pred             CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hH---HHHHHHHHHHHhHCCCCc-eEEEeecCCCCC
Q 023335          144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TL---NSIVGWYSEARKWNQTAI-PILIGTKFDDFV  216 (283)
Q Consensus       144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~---~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~  216 (283)
                      .....+.||||||++.|......+++.+|++|||+|+++..   .+   ......+..+.. . ..| +|||+||+|+..
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l-gip~iIvviNKiDl~~  329 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L-GISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S-SCCCEEEEEECGGGGT
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c-CCCeEEEEEecccccc
Confidence            33467899999999999888888999999999999998632   11   011112222222 2 334 578999999621


Q ss_pred             CCCCCcccchHHHHHHHH-HHcCC-----cEEEEcCCCCcCHH
Q 023335          217 RLPPDLQWTIATQARAYA-KAMKA-----TLFFSSATHNINVN  253 (283)
Q Consensus       217 ~l~~~~~~~~~~~~~~~~-~~~~~-----~~~e~Sa~~~~~v~  253 (283)
                      . .......+.+++..+. +..++     +++++||++|.||.
T Consensus       330 ~-~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 W-SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             T-CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             c-cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            0 0111112345556665 55555     68999999999998

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=3.3e-17  Score=149.59  Aligned_cols=83  Identities=19%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEE--E-------------------EECC-eEEEEEEEeCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKT--L-------------------MVQG-ARIAFSIWDVGG  156 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~--~-------------------~~~~-~~~~l~i~Dt~G  156 (283)
                      +||+++|.+|||||||+ ++++.... ..+|.+..+.....  +                   .+++ ..+.+++|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999 99988743 55553222222221  1                   1233 257899999999


Q ss_pred             CCC----cccchh---hhcccCcEEEEEEECCCh
Q 023335          157 DSR----SFDHVP---IACKDAVAILFMFDLTSR  183 (283)
Q Consensus       157 ~~~----~~~~~~---~~~~~ad~iilv~D~~~~  183 (283)
                      ...    +..+..   .+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            854    233333   356899999999999876

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.66  E-value=1.2e-15  Score=131.74  Aligned_cols=113  Identities=18%  Similarity=0.161  Sum_probs=84.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcc------
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------  169 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------  169 (283)
                      ..+||+++|..|||||||+ ++++..+.  ..++++........+..++.  .+.+|||||++.+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            4799999999999999999 99998864  44444444444555566664  6889999999988766655554      


Q ss_pred             ---cCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCC---CceEEEeecCCC
Q 023335          170 ---DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQT---AIPILIGTKFDD  214 (283)
Q Consensus       170 ---~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~---~~~ilvgnK~DL  214 (283)
                         ++|++++|+|++... +... ..|++.+......   .+.++|+||+|+
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl  163 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF  163 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence               889999999998755 4433 4788877765432   255899999997

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.66  E-value=4.6e-16  Score=150.85  Aligned_cols=113  Identities=13%  Similarity=0.097  Sum_probs=79.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ...+|+|+|..|+|||||+ ++++....              ...+   ..++.+......+....+.+++|||+|++.|
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            3578999999999999999 98743221              0000   1133333333334334577899999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      ......+++.+|++++|+|+++....+. ..|+..+...  +.|+|+|+||+|+
T Consensus        88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~--~ip~ilv~NKiD~  138 (665)
T 2dy1_A           88 VGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL--GLPRMVVVTKLDK  138 (665)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEECGGG
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc--cCCEEEEecCCch
Confidence            8888899999999999999987655443 3444555442  4566899999996

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.65  E-value=1.5e-16  Score=145.88  Aligned_cols=159  Identities=14%  Similarity=0.162  Sum_probs=85.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cc--------cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-------
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-------  161 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------  161 (283)
                      ..++|+|+|++|||||||+ .+++..+. ..        .++.+.+.....+..++....+.+||++|...+.       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            4689999999999999999 99887663 21        1233322222222234445679999999976531       


Q ss_pred             c------------------chhhhcccCcEEEEEEECCCh-hhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335          162 D------------------HVPIACKDAVAILFMFDLTSR-CTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD  221 (283)
Q Consensus       162 ~------------------~~~~~~~~ad~iilv~D~~~~-~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~  221 (283)
                      .                  +.+.++.++++.+++|+.... .++.... .|+..+.   ...++|+|+||+|+   +...
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dl---l~~~  183 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADT---LTPE  183 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTS---SCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccC---ccHH
Confidence            1                  224456777777777776653 4565554 6777664   35566899999997   3221


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          222 LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ......+++.+++..+++.+|++||+++.+++++|..+...+
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            111113778888889999999999999999999888887654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.62  E-value=1.6e-15  Score=131.55  Aligned_cols=113  Identities=17%  Similarity=0.096  Sum_probs=78.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhh---------
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI---------  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---------  166 (283)
                      ..+||+++|.+|+|||||+ ++++..+.  ...+.+..+.....+..+  ...+.+|||||.+.+..+...         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            4799999999999999999 99988864  333322222222333333  456899999999876543321         


Q ss_pred             hcccCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCC---CceEEEeecCCC
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQT---AIPILIGTKFDD  214 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~---~~~ilvgnK~DL  214 (283)
                      ..+.+|++++|||++.. ++... ..|+..+......   .+.++|+||+|+
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl  166 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF  166 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence            13479999999999763 34433 4788888765332   466899999997

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.62  E-value=3e-16  Score=152.79  Aligned_cols=166  Identities=16%  Similarity=0.147  Sum_probs=106.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--ccccccee--------eeeEE------------------------------
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGL--------NLINK------------------------------  138 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~--------~~~~~------------------------------  138 (283)
                      .++|+|+|.+|+|||||+ ++++..+.  ...|++..        +....                              
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~  148 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK  148 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence            689999999999999999 99987754  34444310        00000                              


Q ss_pred             ---------------EEEECCeE--EEEEEEeCCCCCC---cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHh
Q 023335          139 ---------------TLMVQGAR--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK  198 (283)
Q Consensus       139 ---------------~~~~~~~~--~~l~i~Dt~G~~~---~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~  198 (283)
                                     .+.++...  ..+.+|||||...   .......+++++|++|+|+|+++..+..+...|.+.+..
T Consensus       149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~  228 (695)
T 2j69_A          149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG  228 (695)
T ss_dssp             HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT
T ss_pred             HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh
Confidence                           01111100  2488999999654   334566788999999999999998888887777655543


Q ss_pred             HCCCCceEEEeecCCCCCC--CCCCcccc---hHHHHHH-----HHHH--------cCCcEEEEcCC-------------
Q 023335          199 WNQTAIPILIGTKFDDFVR--LPPDLQWT---IATQARA-----YAKA--------MKATLFFSSAT-------------  247 (283)
Q Consensus       199 ~~~~~~~ilvgnK~DL~~~--l~~~~~~~---~~~~~~~-----~~~~--------~~~~~~e~Sa~-------------  247 (283)
                      .  ..|.++|+||+|+...  ..++....   ..+....     +...        ....+|++||+             
T Consensus       229 ~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~  306 (695)
T 2j69_A          229 R--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQAD  306 (695)
T ss_dssp             S--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCC
T ss_pred             h--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhh
Confidence            2  3456899999997211  00000000   0111211     1111        12468999999             


Q ss_pred             -CCcCHHHHHHHHHHHHhCCc
Q 023335          248 -HNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       248 -~~~~v~~lf~~l~~~i~~~~  267 (283)
                       ++.|++++++.+.+.+....
T Consensus       307 ~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          307 LDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             CTTSSHHHHHHHHHHHHHHTH
T ss_pred             hhccCHHHHHHHHHHHHHHhH
Confidence             99999999999998775543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.61  E-value=2.7e-15  Score=145.94  Aligned_cols=113  Identities=15%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCc--cc------------cc-----cccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNE--QE------------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGD  157 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~--~~------------~~-----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~  157 (283)
                      ....+|+|+|..|+|||||+ +++...  +.            ..     ............+.++  .+.+++|||+|+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcCc
Confidence            45789999999999999999 998421  10            00     0011111112233334  367899999999


Q ss_pred             CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       158 ~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      ..|......+++.+|++|+|+|+++..+++....|... ..  .+.|+++|+||+|+.
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~--~~~p~ivviNKiD~~  142 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK--YKVPRIAFANKMDKT  142 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH--TTCCEEEEEECTTST
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH--cCCCEEEEEECCCcc
Confidence            99999999999999999999999998888877766643 33  255678999999974

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.61  E-value=2.4e-15  Score=141.95  Aligned_cols=114  Identities=11%  Similarity=0.070  Sum_probs=75.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCc--cc----------------c---ccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNE--QE----------------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGG  156 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~----------------~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G  156 (283)
                      ...+|+++|.+|+|||||+ +++...  +.                +   ...+.|.++......++...+.+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            3689999999999999999 998531  10                0   001222222222222333346789999999


Q ss_pred             CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      ++.|......+++.+|++|+|+|+++...-.. ..++..+..  .+.|+++++||+|+.
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRD  147 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCc
Confidence            99999888889999999999999988643222 223333222  245668999999974

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.59  E-value=1e-14  Score=142.10  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC--ccc------------cccc---cceeeeeE--EEEEEC-----CeEEEEEEEe
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN--EQE------------RSLQ---MAGLNLIN--KTLMVQ-----GARIAFSIWD  153 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~--~~~------------~~~~---t~~~~~~~--~~~~~~-----~~~~~l~i~D  153 (283)
                      ...+|+|+|..++|||||+ +++..  .+.            +..+   ..|.+...  ..+.++     +..+.++|||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            3579999999999999999 99742  111            0000   11222211  223332     3448899999


Q ss_pred             CCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       154 t~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      |+|+..|......+++.+|++|+|+|+++..+.+....|.. +..  .+.|+++|+||+|+.
T Consensus        89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRM  147 (704)
T ss_pred             CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCcc
Confidence            99999999889999999999999999998876666555543 322  245668999999973

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.58  E-value=8.8e-16  Score=138.60  Aligned_cols=105  Identities=11%  Similarity=0.055  Sum_probs=73.4

Q ss_pred             EEEEEeCCCCCCc-------------ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCC
Q 023335          148 AFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFD  213 (283)
Q Consensus       148 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~D  213 (283)
                      .+.+|||||...+             ..+...|++++|++|+|+|.++.+...  ..|+..++...+. .+.|+|+||+|
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence            5789999998876             456678899999999999976654322  3455555555443 45689999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHH
Q 023335          214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI  259 (283)
Q Consensus       214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l  259 (283)
                      +   +...  ....+.+..++..++..|+++|+.++.++++.+..+
T Consensus       215 l---~~~~--~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          215 L---MDKG--TDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             G---CCTT--CCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             c---CCCc--ccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            7   3221  122344444455667889999999999988765543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.57  E-value=1e-14  Score=142.02  Aligned_cols=112  Identities=15%  Similarity=0.131  Sum_probs=80.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc--Cccc------------cc-----cccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG--NEQE------------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDS  158 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~--~~~~------------~~-----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  158 (283)
                      ...+|+|+|.+|+|||||+ +++.  +.+.            +.     .+.+........+.+++  +.+++|||+|+.
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~   86 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHV   86 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCc
Confidence            3689999999999999999 9984  2221            00     01111111123344444  668999999999


Q ss_pred             CcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335          159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF  215 (283)
Q Consensus       159 ~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~  215 (283)
                      .|......+++.+|++|+|+|+++..+++....|.. +...  +.|+++|+||+|+.
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~  140 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKL  140 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence            999889999999999999999999888777666654 4332  45678999999974

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.57  E-value=5e-15  Score=130.82  Aligned_cols=115  Identities=12%  Similarity=0.046  Sum_probs=69.9

Q ss_pred             EEEEEEeCCCCCC-------------cccchhhhcccCcEEEEEEECCChhhH-HHHHHHHHHHHhHCCCCceEEEeecC
Q 023335          147 IAFSIWDVGGDSR-------------SFDHVPIACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGTKF  212 (283)
Q Consensus       147 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvgnK~  212 (283)
                      ..+.+|||||...             +......+++++|++++|+|.++.... .....+...+..  ...|.++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            4689999999764             334556688999999999998543211 111123333321  245668999999


Q ss_pred             CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC---C---CcCHHHHHHHHHHHHhCCcc
Q 023335          213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT---H---NINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       213 DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~---~---~~~v~~lf~~l~~~i~~~~~  268 (283)
                      |+   .... . ...+.+......++..++++|+.   +   +.|+.++++.+.+.+...++
T Consensus       209 Dl---~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          209 DL---MDKG-T-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             TS---SCSS-C-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             cc---CCcc-h-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            97   2222 1 11222221111223567776655   4   78899999999988877665

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.57  E-value=3.2e-14  Score=127.70  Aligned_cols=144  Identities=13%  Similarity=0.091  Sum_probs=94.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCcc-
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF-  161 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~-  161 (283)
                      .+||+++|.+|||||||+ ++++..+. ..+|.+..+.....+.+++..               ..+++|||+|..++. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            479999999999999999 99988754 556633333323345555532               568999999998753 


Q ss_pred             ---cchhh---hcccCcEEEEEEECCCh----------hhHHHHHHHHHHHH----------------------------
Q 023335          162 ---DHVPI---ACKDAVAILFMFDLTSR----------CTLNSIVGWYSEAR----------------------------  197 (283)
Q Consensus       162 ---~~~~~---~~~~ad~iilv~D~~~~----------~s~~~~~~~~~~i~----------------------------  197 (283)
                         .+...   +++++|++++|+|+++.          ++++++..|..++.                            
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence               33333   47899999999999862          44554443332221                            


Q ss_pred             ------------h-------------------H--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335          198 ------------K-------------------W--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  244 (283)
Q Consensus       198 ------------~-------------------~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  244 (283)
                                  .                   +  ...+|.++++||.|..  +   ....-.+.+++++...+++++.+
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~--~---~~n~~~~~v~~~~~~~~~~~i~~  236 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDG--F---ENNPYLDRVREIAAKEGAVVVPV  236 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTC--S---SSCHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccc--c---cccHHHHHHHHHHHHcCCCEEEe
Confidence                        0                   0  1125668999999941  1   11233677888888889999999


Q ss_pred             cCCC
Q 023335          245 SATH  248 (283)
Q Consensus       245 Sa~~  248 (283)
                      ||+.
T Consensus       237 sA~~  240 (363)
T 1jal_A          237 CAAI  240 (363)
T ss_dssp             CHHH
T ss_pred             chHH
Confidence            9764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.57  E-value=7.8e-18  Score=141.71  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=86.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeee------------EEEEEEC-CeEE-----------------
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLI------------NKTLMVQ-GARI-----------------  147 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~------------~~~~~~~-~~~~-----------------  147 (283)
                      .+||+|+|.+|||||||+ +++...+.. ..++.+.++.            ...+.++ +..+                 
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  117 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD  117 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence            479999999999999999 999876653 3335554443            2333332 2112                 


Q ss_pred             --EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335          148 --AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  225 (283)
Q Consensus       148 --~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~  225 (283)
                        .+.+.|++|.-..   ...+-...+.++.+.|.........  .....+     ..+.++|+||+|+.    + ....
T Consensus       118 ~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~----~-~~~~  182 (226)
T 2hf9_A          118 EIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLA----D-AVGA  182 (226)
T ss_dssp             GCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGH----H-HHTC
T ss_pred             CCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccC----c-hhHH
Confidence              2333444442100   0011112334556666432111000  001111     24569999999961    1 1112


Q ss_pred             hHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          226 IATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       226 ~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ..+++.++++.+  +++++++||++|.|++++|+++.+.+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          183 DIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             CHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            355666666654  5789999999999999999999987753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.53  E-value=9.2e-15  Score=122.36  Aligned_cols=152  Identities=10%  Similarity=0.034  Sum_probs=90.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeee------------EEEEEECC------------------eEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLI------------NKTLMVQG------------------ARI  147 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~------------~~~~~~~~------------------~~~  147 (283)
                      ..+|+++|.+|||||||+ +++...... .......++.            ...+.++.                  ...
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            468999999999999999 988653211 0001111100            01111211                  234


Q ss_pred             EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH
Q 023335          148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA  227 (283)
Q Consensus       148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~  227 (283)
                      .+.+|||+|+....   ..+...++.+++|+|+++....  ...+....     ..|.++|+||+|+.    + ......
T Consensus       110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~-----~~~~iiv~NK~Dl~----~-~~~~~~  174 (221)
T 2wsm_A          110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEIF-----RVADLIVINKVALA----E-AVGADV  174 (221)
T ss_dssp             SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH-----HTCSEEEEECGGGH----H-HHTCCH
T ss_pred             CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhhh-----hcCCEEEEecccCC----c-chhhHH
Confidence            67889999852111   1112357889999998765421  11222221     34668999999961    1 111224


Q ss_pred             HHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          228 TQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       228 ~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      +++.++++..  +++++++||++|.|++++|++|.+.+...
T Consensus       175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            4555555554  46899999999999999999999887553

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.50  E-value=1.6e-14  Score=130.10  Aligned_cols=103  Identities=11%  Similarity=0.049  Sum_probs=68.2

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      +.+.||||+|...   .....+..+|++++|+|.+..+.++.+..+       ....|.++|+||+|+    .  .....
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl----~--~~~~~  235 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADG----E--HHKEA  235 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCG----G--GHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCC----c--ChhHH
Confidence            5688999999433   233345899999999998776554333211       112366899999996    1  11111


Q ss_pred             HHHHHHHHHH---c-------CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          227 ATQARAYAKA---M-------KATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       227 ~~~~~~~~~~---~-------~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      .....++...   .       +.+++++||++|.|+++++++|.+.+..
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            2222222222   2       5789999999999999999999987754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.50  E-value=1.2e-15  Score=137.31  Aligned_cols=154  Identities=15%  Similarity=0.120  Sum_probs=87.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cc------ccc----------------------c------------------
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RS------LQM----------------------A------------------  131 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~------~~t----------------------~------------------  131 (283)
                      ..+|+|+|.+|||||||+ ++++..+. ..      .|+                      +                  
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            579999999999999999 99998764 11      121                      0                  


Q ss_pred             ---eeeeeEEEEEECC-eEEEEEEEeCCCCCC-------------cccchhhhcccCcEEEE-EEECCChhhHHHHHHHH
Q 023335          132 ---GLNLINKTLMVQG-ARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAILF-MFDLTSRCTLNSIVGWY  193 (283)
Q Consensus       132 ---~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~iil-v~D~~~~~s~~~~~~~~  193 (283)
                         |+......+.+.+ ....+.||||||...             +..+...|+++++.+|+ |.|.+....-.   .|.
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~~  187 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DAL  187 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HHH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HHH
Confidence               0000001111111 125689999999642             33455667766665555 45554321111   232


Q ss_pred             HHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHH--HHHHcC-CcEEEEcCCCCcCHHHHHHHHHH
Q 023335          194 SEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARA--YAKAMK-ATLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       194 ~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~--~~~~~~-~~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      ..++...+ ..+.|+|+||+|+.   .... . ..+..+.  +....+ ..++++||+++.|++++++.+.+
T Consensus       188 ~i~~~~~~~~~~~i~V~NK~Dl~---~~~~-~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          188 KVAKEVDPQGQRTIGVITKLDLM---DEGT-D-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHCTTCTTEEEEEECGGGS---CTTC-C-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHhCcCCCceEEEecccccc---Ccch-h-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            23333333 44568999999972   2211 1 1111110  000112 24567999999999999999876

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.50  E-value=6.6e-14  Score=126.27  Aligned_cols=155  Identities=12%  Similarity=0.078  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC-------------------eEEEEEEEeCCCCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-------------------ARIAFSIWDVGGDSR  159 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~-------------------~~~~l~i~Dt~G~~~  159 (283)
                      ++|+++|.+|||||||+ ++++.... ..++.+..+.....+.+++                   ....+++|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            68999999999999999 98876533 4444222222222333332                   235689999999876


Q ss_pred             cc----cchhh---hcccCcEEEEEEECCCh----------hhHHHHHHHHHHH--------------------------
Q 023335          160 SF----DHVPI---ACKDAVAILFMFDLTSR----------CTLNSIVGWYSEA--------------------------  196 (283)
Q Consensus       160 ~~----~~~~~---~~~~ad~iilv~D~~~~----------~s~~~~~~~~~~i--------------------------  196 (283)
                      +.    .+...   +++.+|++++|+|+++.          +.+.++..+..++                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            53    23333   47899999999999862          2333332211111                          


Q ss_pred             ---------HhH-------------------------CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335          197 ---------RKW-------------------------NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF  242 (283)
Q Consensus       197 ---------~~~-------------------------~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
                               ...                         ...+|.++++||.|..  +.......-.+.++++++..+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d--~~~~~~n~~~~~v~~~a~~~g~~vv  239 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEED--LPDGRGNPQVEAVRRKALEEGAEVV  239 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGG--TTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHh--hcccchhhHHHHHHHHHHHcCCeEE
Confidence                     000                         0124668999999831  1111112346778889988899999


Q ss_pred             EEcCCCCcCHHHHHH
Q 023335          243 FSSATHNINVNKIFK  257 (283)
Q Consensus       243 e~Sa~~~~~v~~lf~  257 (283)
                      ++||+++.++.++++
T Consensus       240 ~iSAk~E~el~eL~~  254 (368)
T 2dby_A          240 VVSARLEAELAELSG  254 (368)
T ss_dssp             EECHHHHHHHHTSCH
T ss_pred             EeechhHHHHHHhch
Confidence            999988655554443

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.48  E-value=9.6e-14  Score=137.74  Aligned_cols=113  Identities=13%  Similarity=0.129  Sum_probs=83.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCc------------cccc-----cc--cceeeeeEEEEE------------ECCeE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNE------------QERS-----LQ--MAGLNLINKTLM------------VQGAR  146 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~------------~~~~-----~~--t~~~~~~~~~~~------------~~~~~  146 (283)
                      ...||+|+|..++|||||+ +++...            +.+.     ..  |+........+.            .++..
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            4689999999999999999 998641            1110     11  222222222222            24457


Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      +.+++|||+|+.+|......+++.+|++|+|||+++..+++....|.....   .+.|+|+|+||+|+
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~  162 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDR  162 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCc
Confidence            889999999999999999999999999999999999988888776765443   24567899999996

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.38  E-value=1.5e-12  Score=114.72  Aligned_cols=98  Identities=8%  Similarity=0.018  Sum_probs=80.1

Q ss_pred             CCCCcccchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch-HHHHHHH
Q 023335          156 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAY  233 (283)
Q Consensus       156 G~~~~~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~  233 (283)
                      .++++..+.+.+++++|++++|||+++++ +++.+..|+..+..  .+.|+|||+||+||   .+ + ..+. .++..++
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL---~~-~-~~v~~~~~~~~~  137 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDL---LN-E-EEKKELERWISI  137 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGG---CC-H-HHHHHHHHHHHH
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccC---CC-c-cccHHHHHHHHH
Confidence            37888899999999999999999999986 89999999988765  45677999999997   22 1 1111 4556677


Q ss_pred             HHHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023335          234 AKAMKATLFFSSATHNINVNKIFKFIM  260 (283)
Q Consensus       234 ~~~~~~~~~e~Sa~~~~~v~~lf~~l~  260 (283)
                      ++..+++++++||++|.|++++|+.+.
T Consensus       138 ~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          138 YRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            777899999999999999999998754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.35  E-value=4.4e-13  Score=120.36  Aligned_cols=101  Identities=10%  Similarity=0.017  Sum_probs=59.7

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      +.+.++||+|...   ........+|++++|+|.++.+..+.+..   .+    -..+.++|.||+|+   .+   ....
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl---~~---~~~~  230 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDG---DL---IVPA  230 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSG---GG---HHHH
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecC---CC---chhH
Confidence            4578899999532   12334679999999999987543322221   11    13456899999996   11   1111


Q ss_pred             HHHHHHHHH----------HcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          227 ATQARAYAK----------AMKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       227 ~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ......+..          .++.+++.+||++|.|+++++++|.+.+
T Consensus       231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            112222222          1245688999999999999999998865

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.34  E-value=1.2e-12  Score=124.15  Aligned_cols=113  Identities=15%  Similarity=0.041  Sum_probs=77.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc----cccccceeeeeEE-----EEEEC-----------------------CeE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE----RSLQMAGLNLINK-----TLMVQ-----------------------GAR  146 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~----~~~~t~~~~~~~~-----~~~~~-----------------------~~~  146 (283)
                      ..+|+|+|.+|||||||+ ++++..+.    ...+++.......     .+..+                       +..
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~  144 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM  144 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence            579999999999999999 99998762    3344331100000     00000                       000


Q ss_pred             ---------EEEEEEeCCCCCC-----------cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceE
Q 023335          147 ---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI  206 (283)
Q Consensus       147 ---------~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i  206 (283)
                               ..+.||||+|...           |......++..+|++|+|+|+++....+....|+..+...  ..+.+
T Consensus       145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvi  222 (550)
T 2qpt_A          145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIR  222 (550)
T ss_dssp             EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEE
T ss_pred             EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEE
Confidence                     2588999999764           3345666789999999999998866666666777766532  34568


Q ss_pred             EEeecCCC
Q 023335          207 LIGTKFDD  214 (283)
Q Consensus       207 lvgnK~DL  214 (283)
                      +|+||+|+
T Consensus       223 lVlNK~Dl  230 (550)
T 2qpt_A          223 VVLNKADM  230 (550)
T ss_dssp             EEEECGGG
T ss_pred             EEEECCCc
Confidence            99999996

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.32  E-value=7.2e-13  Score=118.64  Aligned_cols=105  Identities=10%  Similarity=-0.020  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      +.+.||||+|......   ...+.+|++++|+|.++.+.++.+...   ..    +.|.++|+||+|+.   ........
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~~----~~p~ivv~NK~Dl~---~~~~~~~~  215 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---LM----EVADLIVINKDDGD---NHTNVAIA  215 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---HH----HHCSEEEECCCCTT---CHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---hh----cccCEEEEECCCCC---ChHHHHHH
Confidence            5688999999654332   246899999999999765432221111   10    23558999999961   11000001


Q ss_pred             HHHHHHHHHHc-------CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          227 ATQARAYAKAM-------KATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       227 ~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      .++.++.....       ..+++++||++|.|++++++.|.+.+.
T Consensus       216 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          216 RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            12233222222       346889999999999999999988764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.29  E-value=1.2e-11  Score=105.97  Aligned_cols=113  Identities=10%  Similarity=0.005  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCCCCcccchh------hhcccCcEEEEEEECCChhhHHHHH---HHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDHVP------IACKDAVAILFMFDLTSRCTLNSIV---GWYSEARKWNQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~------~~~~~ad~iilv~D~~~~~s~~~~~---~~~~~i~~~~~~~~~ilvgnK~DL~~~  217 (283)
                      +.+.||||+|+..+.....      ..+.+ +++++++|.+...+..+..   .+..... ...+.|.++|+||+|+.  
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~--  184 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLL--  184 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGC--
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccc--
Confidence            4689999999876533221      24456 8888899876443322222   1111111 12245668999999962  


Q ss_pred             CCCCcccchHHH---HH----H-----------------HHHHcC--CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          218 LPPDLQWTIATQ---AR----A-----------------YAKAMK--ATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       218 l~~~~~~~~~~~---~~----~-----------------~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                       .........+.   ..    .                 +++.++  ++++++||+++.|+++++++|.+.+.
T Consensus       185 -~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          185 -SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             -CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence             11100000110   00    1                 123433  47999999999999999999988764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.29  E-value=1.4e-11  Score=116.66  Aligned_cols=111  Identities=10%  Similarity=0.065  Sum_probs=77.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC------------------ccccccc---cceeeeeE--EEEEECCeEEEEEEEeC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN------------------EQERSLQ---MAGLNLIN--KTLMVQGARIAFSIWDV  154 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~------------------~~~~~~~---t~~~~~~~--~~~~~~~~~~~l~i~Dt  154 (283)
                      +.-+|+|+|..++|||||. +++..                  .+.+..+   ..|+++..  ..+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            3578999999999999999 98521                  0111110   11333322  3344444  66889999


Q ss_pred             CCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       155 ~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      ||+..|.......++-+|++|+|+|+...-.-+...-|....+.   +.|+|++.||+|.
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr  164 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDR  164 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTS
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccc
Confidence            99999999999999999999999999887555555566444332   4577899999995

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.2e-10  Score=105.06  Aligned_cols=154  Identities=13%  Similarity=0.129  Sum_probs=98.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----ccchhh---hccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPI---ACKD  170 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~---~~~~  170 (283)
                      ..+|.++|.||||||||+ ++++.... ..+|.+..+.....+.+++..  +++.||||....    ..+...   .++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            368999999999999999 99987765 788877777777788888855  678999996432    222223   3579


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHC---CCCceEEEeecCCCCCC---CCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVR---LPPDLQWTIATQARAYAKAMKATLFFS  244 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~DL~~~---l~~~~~~~~~~~~~~~~~~~~~~~~e~  244 (283)
                      ||++++|+|++++.  ........++..+.   .+.|++++.||.|...-   ..........++.+.+...+.+..-.+
T Consensus       150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            99999999999863  33333444554442   35677899999994110   000001122556666666665533333


Q ss_pred             cCCCCcCHHHHHH
Q 023335          245 SATHNINVNKIFK  257 (283)
Q Consensus       245 Sa~~~~~v~~lf~  257 (283)
                      -...+...+++.+
T Consensus       228 ~~~~nv~eddl~d  240 (376)
T 4a9a_A          228 AFRCDATVDDLID  240 (376)
T ss_dssp             EECSCCCHHHHHH
T ss_pred             eecccCCHHHHHH
Confidence            2333444555443

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.13  E-value=2.8e-11  Score=109.70  Aligned_cols=86  Identities=14%  Similarity=0.202  Sum_probs=52.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCe---------------EEEEEEEeCCCCCCccc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSFD  162 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~  162 (283)
                      .++|.++|.+|||||||+ ++++..+. ..+|+++.+.....+.+++.               ...+++|||+|...+..
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            579999999999999999 99988765 66776666666666666553               23589999999876543


Q ss_pred             -------chhhhcccCcEEEEEEECCChhh
Q 023335          163 -------HVPIACKDAVAILFMFDLTSRCT  185 (283)
Q Consensus       163 -------~~~~~~~~ad~iilv~D~~~~~s  185 (283)
                             ....+++++|++++|+|+++.++
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence                   34457899999999999986544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.11  E-value=2.6e-11  Score=116.98  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC--ccc------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCccc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN--EQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD  162 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~--~~~------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~  162 (283)
                      .+|+|+|...+|||||. +++..  ...            +..+   ..|++.....+.+..+...+++.||||+..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            46899999999999999 88521  111            0000   113444333333444456789999999999999


Q ss_pred             chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          163 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      .....++-+|++|+|+|+...-.-+...-|....+.   +.|+|++.||+|.
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr  131 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQ  131 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecccc
Confidence            999999999999999999876443443445443333   4567899999995

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.11  E-value=4.8e-11  Score=116.12  Aligned_cols=155  Identities=17%  Similarity=0.113  Sum_probs=90.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--ccccccee-----------------------------------------
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGL-----------------------------------------  133 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~-----------------------------------------  133 (283)
                      ....+|+|+|.+++|||||+ .+++..+.  ..-.+|..                                         
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            44579999999999999999 99997762  21111100                                         


Q ss_pred             -------eeeEEEEE--ECCeEEEEEEEeCCCCCCc-------------ccchhhhc-ccCcEEEEEEECCChhhHHHHH
Q 023335          134 -------NLINKTLM--VQGARIAFSIWDVGGDSRS-------------FDHVPIAC-KDAVAILFMFDLTSRCTLNSIV  190 (283)
Q Consensus       134 -------~~~~~~~~--~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~-~~ad~iilv~D~~~~~s~~~~~  190 (283)
                             ......+.  ..+ ...+.++||||-..-             ..+...|+ ..+|++++|+|+++..+-.+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                   00000111  111 124778999996541             12333444 5889999999998753333322


Q ss_pred             HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH----cC-CcEEEEcCCCCcCHHHHHHHHHHH
Q 023335          191 GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----MK-ATLFFSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       191 ~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~----~~-~~~~e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      .++..+..  ...|.|+|.||+|+   +..... . . .... .+.    .+ .+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L~~--~g~pvIlVlNKiDl---v~~~~~-~-~-~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVDP--QGQRTIGVITKLDL---MDEGTD-A-R-DVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHCT--TCSSEEEEEECTTS---SCTTCC-S-H-HHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHh--cCCCEEEEEeCccc---CCcchh-h-H-HHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            33444432  24566899999997   322211 1 1 1111 011    12 134569999999999999998874

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.09  E-value=4.6e-10  Score=100.18  Aligned_cols=103  Identities=15%  Similarity=0.062  Sum_probs=61.4

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      +.+.|+||+|...-.   ......+|.+++++|.+..+..+.+..+..+       .+.+++.||+|+   .+.  ....
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~-------~~~ivvlNK~Dl---~~~--~~~s  212 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE-------LADMIAVNKADD---GDG--ERRA  212 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH-------HCSEEEEECCST---TCC--HHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHhc-------cccEEEEEchhc---cCc--hhHH
Confidence            457889999965421   2234789999999998654332222111111       134777799996   111  1111


Q ss_pred             HHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          227 ATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       227 ~~~~~~~~~~----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ....+++...          +..+++.+||+++.|++++++.|.+...
T Consensus       213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2223333321          1357888999999999999999987653

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.06  E-value=1.6e-09  Score=105.72  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=77.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCc--------------ccccc---ccceeeeeEE--EEEECC-----eEEEEEEEeC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNE--------------QERSL---QMAGLNLINK--TLMVQG-----ARIAFSIWDV  154 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~--------------~~~~~---~t~~~~~~~~--~~~~~~-----~~~~l~i~Dt  154 (283)
                      --+|+|+|...+|||||. +++...              +.+..   ..-|++....  ++.+.+     ..+.++++||
T Consensus        13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT   92 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT   92 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence            468999999999999999 886211              00000   0113333332  333322     3588999999


Q ss_pred             CCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       155 ~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      ||+-.|.......++-+|++|+|+|+...-.-+...-|.+..+.   +.|+|++.||+|.
T Consensus        93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr  149 (709)
T 4fn5_A           93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDR  149 (709)
T ss_dssp             CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSS
T ss_pred             CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccc
Confidence            99999999999999999999999999876555555556555444   5578999999995

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.05  E-value=5.7e-11  Score=97.81  Aligned_cols=105  Identities=8%  Similarity=0.040  Sum_probs=63.6

Q ss_pred             CCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhH---C---CCCceEEEeecC-CCCCCCCCCcccch
Q 023335          154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW---N---QTAIPILIGTKF-DDFVRLPPDLQWTI  226 (283)
Q Consensus       154 t~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~---~---~~~~~ilvgnK~-DL~~~l~~~~~~~~  226 (283)
                      .+||+.++.+|+.||.++|++|+|+|.+|++-++ .+.-+.++...   .   .+.|.+|.+||. |+...++       
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams-------  180 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-------  180 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC-------
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC-------
Confidence            4589999999999999999999999999986544 33333333221   1   234556888995 7522221       


Q ss_pred             HHHHHHHHH----HcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          227 ATQARAYAK----AMKATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       227 ~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ..++.+...    ...+.++.|||++|+|+.+-++||.+.+..+
T Consensus       181 ~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          181 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            122211111    1234466799999999999999999877554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.04  E-value=1.9e-09  Score=97.72  Aligned_cols=83  Identities=16%  Similarity=0.241  Sum_probs=62.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcc-c-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCc-
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS-  160 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~-  160 (283)
                      ..+|.++|.+|||||||+ .+++... . ..+|++..+.....+.+++..               ..+.+||++|.... 
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            579999999999999999 9998776 4 777766666666777776521               35789999995432 


Q ss_pred             ------ccchhhhcccCcEEEEEEECCC
Q 023335          161 ------FDHVPIACKDAVAILFMFDLTS  182 (283)
Q Consensus       161 ------~~~~~~~~~~ad~iilv~D~~~  182 (283)
                            .......++.+|++++|+|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  2223345689999999999864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.00  E-value=4.7e-10  Score=101.28  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             CCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-ccchHHHHHHHH
Q 023335          156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-QWTIATQARAYA  234 (283)
Q Consensus       156 G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~  234 (283)
                      .++.|..+...+++.++++++|+|+++.+     ..|..++.++..+.|+++|+||+||   ++... .....+....++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL---~~~~~~~~~~~~~l~~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADL---IPKSVKHDKVKHWMRYSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGG---SCTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhc---CCcccCHHHHHHHHHHHH
Confidence            45788899999999999999999999853     5687888887767788999999997   33221 111233344557


Q ss_pred             HHcCC---cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          235 KAMKA---TLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       235 ~~~~~---~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +..|.   .++++||++|.|++++++.+.+..
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            77787   789999999999999999997754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.92  E-value=7e-10  Score=95.64  Aligned_cols=105  Identities=8%  Similarity=0.037  Sum_probs=67.9

Q ss_pred             CCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHH----HHHhH--CCCCceEEEeec-CCCCCCCCCCcccch
Q 023335          154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS----EARKW--NQTAIPILIGTK-FDDFVRLPPDLQWTI  226 (283)
Q Consensus       154 t~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~----~i~~~--~~~~~~ilvgnK-~DL~~~l~~~~~~~~  226 (283)
                      .+||+..+.+|+.||.++|++|+|+|.+|++-++ ...-+.    .+...  ..+.|.+|.+|| .|+...++       
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-------  265 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-------  265 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-------
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC-------
Confidence            4688999999999999999999999999987544 222222    22111  235566788997 58532222       


Q ss_pred             HHHHHHHHH----HcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          227 ATQARAYAK----AMKATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       227 ~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ..++.+...    .....+..|||.+|+|+.+-++||.+.+..+
T Consensus       266 ~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          266 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            122211111    1234466799999999999999999988654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=1.4e-09  Score=98.21  Aligned_cols=101  Identities=15%  Similarity=0.174  Sum_probs=76.3

Q ss_pred             CCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-cchHHHHHHHH
Q 023335          156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYA  234 (283)
Q Consensus       156 G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~  234 (283)
                      .++.|..+...++..++++++|+|+++.++     .|..++.++..+.|.++|+||+||   ++.... ....+....++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DL---l~~~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADL---LPRSVKYPKLLRWMRRMA  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGG---SCTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhc---CCCccCHHHHHHHHHHHH
Confidence            578899999999999999999999999774     566667766667788999999997   333211 12233444556


Q ss_pred             HHcCC---cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          235 KAMKA---TLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       235 ~~~~~---~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      +..|.   .++++||++|.|++++++.+.+...
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            67777   6889999999999999999877653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.43  E-value=4.1e-07  Score=83.09  Aligned_cols=141  Identities=12%  Similarity=0.145  Sum_probs=68.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccc--cceeeeeEEEEEE--CCeEEEEEEEeCCCCCCccc-----------
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQ--MAGLNLINKTLMV--QGARIAFSIWDVGGDSRSFD-----------  162 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~--t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~-----------  162 (283)
                      .++++|+|.+|+|||||+ .+.+-.+.. ...  +.+.......+..  .+....+.++|++|-.....           
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            367999999999999999 777764431 111  1111111111111  22334688899987532110           


Q ss_pred             ---chhh----h---------cccCc---EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc
Q 023335          163 ---HVPI----A---------CKDAV---AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ  223 (283)
Q Consensus       163 ---~~~~----~---------~~~ad---~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~  223 (283)
                         ....    +         ..+++   +++|+.|....-+-.++ .++..+   ....++|+|.||+|.   +.+...
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~---Lt~~E~  194 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADA---ISKSEL  194 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGG---SCHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhc---cchHHH
Confidence               0001    1         12222   45666666543332221 222222   345566899999996   443322


Q ss_pred             cchHHHHHHHHHHcCCcEEEEcCC
Q 023335          224 WTIATQARAYAKAMKATLFFSSAT  247 (283)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~e~Sa~  247 (283)
                      ....+.+.+-....|+++|.+|..
T Consensus       195 ~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          195 TKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHHHHcCCcEEecCCC
Confidence            222344444344567888887754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.41  E-value=1.2e-07  Score=88.68  Aligned_cols=148  Identities=16%  Similarity=0.119  Sum_probs=82.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh------cCccc--c--cccc------------ceeeeeEEEEE-------------EC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV------GNEQE--R--SLQM------------AGLNLINKTLM-------------VQ  143 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~------~~~~~--~--~~~t------------~~~~~~~~~~~-------------~~  143 (283)
                      ...|+++|.+||||||++ ++.      +.+..  .  .+.+            .++++......             ..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~  180 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK  180 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999 887      33221  1  1000            01221110000             00


Q ss_pred             CeEEEEEEEeCCCCCCccc-chhh---h--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCC
Q 023335          144 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFV  216 (283)
Q Consensus       144 ~~~~~l~i~Dt~G~~~~~~-~~~~---~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~  216 (283)
                      ...+.+.|+||+|...... +...   .  +..+|.+++|+|.+......   .....+...   .++ ++|.||.|.. 
T Consensus       181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~---~~i~gvVlNK~D~~-  253 (504)
T 2j37_W          181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK---VDVASVIVTKLDGH-  253 (504)
T ss_dssp             HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH---HCCCCEEEECTTSC-
T ss_pred             HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh---cCceEEEEeCCccc-
Confidence            0235688999999764321 1111   1  22789999999998754321   122223221   243 7999999951 


Q ss_pred             CCCCCcccchHHHHHHHHHHcCCcE------------------EEEcCCCCcC-HHHHHHHHHHH
Q 023335          217 RLPPDLQWTIATQARAYAKAMKATL------------------FFSSATHNIN-VNKIFKFIMAK  262 (283)
Q Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------~e~Sa~~~~~-v~~lf~~l~~~  262 (283)
                         .  ...   .+.......+.++                  +.+|+..|.| +.++++++.+.
T Consensus       254 ---~--~~g---~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          254 ---A--KGG---GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ---C--CCT---HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ---c--chH---HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence               1  111   1222333445443                  2378999999 99999888765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.39  E-value=4.2e-07  Score=78.92  Aligned_cols=98  Identities=12%  Similarity=0.012  Sum_probs=67.5

Q ss_pred             eCCCCC-CcccchhhhcccCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHH
Q 023335          153 DVGGDS-RSFDHVPIACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ  229 (283)
Q Consensus       153 Dt~G~~-~~~~~~~~~~~~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~  229 (283)
                      ..||+. +........+..+|+++.|+|+.++.+..  .+..|+       .+.+.++|.||+||   .+   . ...+.
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL---~~---~-~~~~~   70 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADK---AD---A-AVTQQ   70 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGG---SC---H-HHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECccc---CC---H-HHHHH
Confidence            457765 33444556789999999999999987764  334443       46777999999997   22   1 11233


Q ss_pred             HHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          230 ARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       230 ~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ..++.+..+.+++++||+++.|++++++.+.+.+.
T Consensus        71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            34445556789999999999999999998877664

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.32  E-value=3.6e-06  Score=76.76  Aligned_cols=161  Identities=12%  Similarity=0.097  Sum_probs=86.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeee-EEEEEECCeEEEEEEEeCCCCCCcccchhhh-----cccC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLI-NKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----CKDA  171 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-----~~~a  171 (283)
                      ..++++|++|+|||||+ .+.+-...  ......+.+.. ...+.-....-.+.+||++|-.........+     +.+.
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            37999999999999999 77763221  11111111110 0111111111146789999853211111222     3344


Q ss_pred             cEEEEEEECC--ChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC------CCCCCCcccchHHHHHHHHH----HcC-
Q 023335          172 VAILFMFDLT--SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF------VRLPPDLQWTIATQARAYAK----AMK-  238 (283)
Q Consensus       172 d~iilv~D~~--~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~------~~l~~~~~~~~~~~~~~~~~----~~~-  238 (283)
                      +.+++ +|..  .+.-.    .+...+..  ...|.++|.||.|+.      ..+....+....+.++++..    +.+ 
T Consensus       150 ~~~~~-lS~G~~~kqrv----~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          150 DFFII-ISATRFKKNDI----DIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             SEEEE-EESSCCCHHHH----HHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEE-eCCCCccHHHH----HHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            55555 7765  32211    12222222  134668999999962      12333334444555555542    322 


Q ss_pred             --CcEEEEcC--CCCcCHHHHHHHHHHHHhCCcc
Q 023335          239 --ATLFFSSA--THNINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       239 --~~~~e~Sa--~~~~~v~~lf~~l~~~i~~~~~  268 (283)
                        ...+.+|+  ..+.|++++.+.+.+.+.+.++
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~  256 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  256 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence              35788999  6667899999999988866653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.22  E-value=1.8e-06  Score=74.46  Aligned_cols=137  Identities=13%  Similarity=0.146  Sum_probs=70.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceee----eeEEEEEE--C--CeEEEEEEEeCCCCCCcc-------
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLN----LINKTLMV--Q--GARIAFSIWDVGGDSRSF-------  161 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~----~~~~~~~~--~--~~~~~l~i~Dt~G~~~~~-------  161 (283)
                      .++++++|++|+|||||+ .+.+-...  ....-.|.+    .....+.+  .  +....+.++|+.|-....       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            579999999999999999 77653322  100000000    00011111  1  222367889998732210       


Q ss_pred             cc---------------------hhhhcccCcEEEEEEECCC-hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          162 DH---------------------VPIACKDAVAILFMFDLTS-RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       162 ~~---------------------~~~~~~~ad~iilv~D~~~-~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      .+                     .+..+..+++.+++.|-.. .-+-.+ ...+..+..   ..++|+|.||+|.   +.
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~---lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADT---MT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGG---SC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEecccc---CC
Confidence            00                     0112234688888888542 211112 233444433   3566899999996   44


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEE
Q 023335          220 PDLQWTIATQARAYAKAMKATLFF  243 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e  243 (283)
                      ........+.+++..+.+++.+|.
T Consensus       155 ~~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          155 LEEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHcCccccC
Confidence            333223345555566677777664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.21  E-value=2e-07  Score=84.06  Aligned_cols=137  Identities=9%  Similarity=0.089  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC------ccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------h
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN------EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------V  164 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~------~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~  164 (283)
                      .+|+++|.+|||||||+ .+++.      ... ...+.+.  .....+.++..   +.++||||-.....+        .
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999 98875      222 3344222  22233444432   688999996432211        1


Q ss_pred             hhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335          165 PIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF  242 (283)
Q Consensus       165 ~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
                      ..++  +..+.++++.+....--+..+.. ++.+.  ..+.+.+++.||.|.      -...........+.+..|....
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~------~~~~~~~~~~~~~~~~~g~~l~  308 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELT------VHRTKLEKADSLYANQLGELLS  308 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSC------EEEEEGGGHHHHHHHHBTTTBC
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcc------cccccHHHHHHHHHHhcCCccC
Confidence            1122  67789999998743211111100 11111  123345799999995      2233334555566677776655


Q ss_pred             EEcCCCCcC
Q 023335          243 FSSATHNIN  251 (283)
Q Consensus       243 e~Sa~~~~~  251 (283)
                      ..++...++
T Consensus       309 p~~~~~~~~  317 (369)
T 3ec1_A          309 PPSKRYAAE  317 (369)
T ss_dssp             SSCGGGTTT
T ss_pred             CCCchhhhh
Confidence            555554433

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.10  E-value=1e-06  Score=75.59  Aligned_cols=56  Identities=16%  Similarity=0.219  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      ++++++|.+|||||||+ ++.+.......++.|.+.....+.++.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            79999999999999999 999877643223333333223333332   478999999654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.05  E-value=3.5e-07  Score=82.44  Aligned_cols=132  Identities=10%  Similarity=0.101  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc------cc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc----hh--
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE------QE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----VP--  165 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~--  165 (283)
                      .+|+++|.+|||||||+ ++++..      ..  ...+  |.+.....+.++..   +.++||||-.....+    ..  
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFP--GTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCC--CeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999 988752      11  2333  22222333444432   688999996432211    11  


Q ss_pred             --hh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335          166 --IA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL  241 (283)
Q Consensus       166 --~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
                        .+  .+..+.+++++|.....-+..+.. ++.+.  ....|.+++.||.|.      -...........+.+..|...
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~------~~~~~~~~~~~~~~~~~g~~l  306 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLT------IHRTKLEKADELYKNHAGDLL  306 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSC------EEEEEHHHHHHHHHHHBTTTB
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccc------cccccHHHHHHHHHHHhCCcc
Confidence              11  256778888887632211111100 00111  123345799999995      223344555566667777654


Q ss_pred             EEEcC
Q 023335          242 FFSSA  246 (283)
Q Consensus       242 ~e~Sa  246 (283)
                      ...++
T Consensus       307 ~p~~~  311 (368)
T 3h2y_A          307 SPPTP  311 (368)
T ss_dssp             CSSCH
T ss_pred             CCCch
Confidence            44443

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.98  E-value=7.8e-08  Score=89.48  Aligned_cols=101  Identities=12%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--ccch--------hhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHV--------PIA  167 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~--------~~~  167 (283)
                      ..++|+++|.+|+||||+. ++...-.....++.+++.........+......+||..|++.+  ...+        ..+
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999 8765432222333322211100011122233467999887332  2222        456


Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhHC
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  200 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~  200 (283)
                      +..+.+.++|+|.++. +++....|++.+++..
T Consensus       118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~  149 (469)
T 1bif_A          118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG  149 (469)
T ss_dssp             HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence            6678899999999988 5677778888777653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.97  E-value=4.9e-06  Score=72.15  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=31.2

Q ss_pred             ChhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHH
Q 023335            1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFF   39 (283)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (283)
                      |+++.+|+.+.+.+.+..+..+|.|.-...|...+.+++
T Consensus        10 m~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l   48 (282)
T 1puj_A           10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL   48 (282)
T ss_dssp             TTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH
Confidence            788889999999999999999999988777754454443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.90  E-value=2.1e-05  Score=72.18  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCCCCccc-chh-----hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~-~~~-----~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      +.+.|+||+|...... +..     .....+|.+++|.|.+....-.+   ....+...  -.+..+|.||.|.      
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~--~~i~gVIlTKlD~------  251 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA--TPIGSIIVTKLDG------  251 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS--CTTEEEEEECCSS------
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh--CCCeEEEEECCCC------
Confidence            5678899999654321 111     11235789999999876433222   22222221  2233699999994      


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ...   ...+.......+.++.+++.  |+++++
T Consensus       252 ~~~---gG~~ls~~~~~g~PI~fig~--Ge~vdd  280 (443)
T 3dm5_A          252 SAK---GGGALSAVAATGAPIKFIGT--GEKIDD  280 (443)
T ss_dssp             CSS---HHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred             ccc---ccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence            111   23445556677888888775  665544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.83  E-value=1e-05  Score=69.31  Aligned_cols=90  Identities=8%  Similarity=0.021  Sum_probs=59.8

Q ss_pred             CCCCC-cccchhhhcccCcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHH
Q 023335          155 GGDSR-SFDHVPIACKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR  231 (283)
Q Consensus       155 ~G~~~-~~~~~~~~~~~ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~  231 (283)
                      ||+.. ........+.++|+++.|+|+.++.+..+  +. |+        +.++++|.||+||   .+.    ...+...
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL---~~~----~~~~~~~   68 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDI---ADE----KTTKKWV   68 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGG---SCH----HHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccC---CCH----HHHHHHH
Confidence            55543 22345567789999999999998866543  22 22        5677999999997   221    1122334


Q ss_pred             HHHHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023335          232 AYAKAMKATLFFSSATHNINVNKIFKFIMA  261 (283)
Q Consensus       232 ~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~  261 (283)
                      ++.+..+.++ .+||+++.|++++++.+..
T Consensus        69 ~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           69 EFFKKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            4555567888 9999999999998877644

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.70  E-value=2.8e-05  Score=68.09  Aligned_cols=93  Identities=9%  Similarity=0.059  Sum_probs=61.1

Q ss_pred             ccchhhhcccCcEEEEEEECCChhh-HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA  239 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s-~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~  239 (283)
                      ..+.+..+.++|.+++|+|+.++.. ...+.+++....  ..+.+|+||.||+||   .++.......+...++.+..|.
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL---~~~~~~~~~~~~~~~~y~~~g~  151 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDL---IEDQDTEDTIQAYAEDYRNIGY  151 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGG---CCCHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCcc---CchhhhHHHHHHHHHHHHhCCC
Confidence            3455567899999999999987653 444445554333  346788999999997   2221100112334444455688


Q ss_pred             cEEEEcCCCCcCHHHHHHH
Q 023335          240 TLFFSSATHNINVNKIFKF  258 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~  258 (283)
                      +.+.+||.++.|+++++..
T Consensus       152 ~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          152 DVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             CEEECCHHHHTTCTTTGGG
T ss_pred             eEEEEecCCCCCHHHHHhh
Confidence            9999999999888776643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.63  E-value=4.9e-05  Score=69.71  Aligned_cols=84  Identities=18%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCCCCccc-chh-----hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCC-c-eEEEeecCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-I-PILIGTKFDDFVRL  218 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~-~~~-----~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~-~ilvgnK~DL~~~l  218 (283)
                      +.+.|+||+|...... +..     ..+..+|.+++|.|.+....   ....   ++.+.... + ..+|.||.|.    
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~~~~~i~gvVlnK~D~----  250 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKEAVGEIGSIIVTKLDG----  250 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHTTSCSCEEEEEECSSS----
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhhcccCCeEEEEeCCCC----
Confidence            4578899999764311 111     11236899999999865432   2222   22233333 4 4699999994    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335          219 PPDLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                      ..  .   ...+..+....+.++.+++
T Consensus       251 ~~--~---~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          251 SA--K---GGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             CS--T---THHHHHHHHHSSCCEEEEC
T ss_pred             cc--c---hHHHHHHHHHHCCCEEEee
Confidence            11  1   1223446667777766653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.62  E-value=6.4e-05  Score=65.54  Aligned_cols=93  Identities=15%  Similarity=0.136  Sum_probs=55.8

Q ss_pred             EEEEEEEeCCCCCC--ccc-chh-----hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCC
Q 023335          146 RIAFSIWDVGGDSR--SFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFV  216 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~--~~~-~~~-----~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~  216 (283)
                      .+.+.++||+|...  ... +..     .....+|.+++|.|.+...   +.......+..   ..+ ..+|.||.|.  
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~---~~~i~gvVlnk~D~--  251 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ---ASKIGTIIITKMDG--  251 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH---TCTTEEEEEECGGG--
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh---hCCCCEEEEeCCCC--
Confidence            35678999999776  211 111     1245789999999986432   22222222322   334 3589999994  


Q ss_pred             CCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                        .     .....+..++...+.++.+++  +|++++++
T Consensus       252 --~-----~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          252 --T-----AKGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             --C-----TTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             --C-----cchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence              1     113345567778888888876  56666553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.52  E-value=7.9e-05  Score=68.24  Aligned_cols=90  Identities=17%  Similarity=0.103  Sum_probs=52.0

Q ss_pred             EEEEEEeCCCCCC--cc-cchhh-----hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335          147 IAFSIWDVGGDSR--SF-DHVPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL  218 (283)
Q Consensus       147 ~~l~i~Dt~G~~~--~~-~~~~~-----~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l  218 (283)
                      +.+.|.||+|...  .. .+...     .....+.+++|.|.+......+   ....+...  -.+-.||.||.|.    
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~--~~~~gVIlTKlD~----  250 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA--SPIGSVIITKMDG----  250 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH--CSSEEEEEECGGG----
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc--cCCcEEEEecccc----
Confidence            4577899999644  11 11111     1124689999999876433222   22333321  1244799999994    


Q ss_pred             CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335          219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINV  252 (283)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  252 (283)
                        ..   ....+.......+.|+.+++.  |+++
T Consensus       251 --~a---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          251 --TA---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             --CS---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             --cc---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence              11   133455566667999888776  5554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.31  E-value=0.00014  Score=69.00  Aligned_cols=60  Identities=13%  Similarity=0.198  Sum_probs=37.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccc-----cceeeeeEEEEEE-CCeEEEEEEEeCCCCCC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ-----MAGLNLINKTLMV-QGARIAFSIWDVGGDSR  159 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~-----t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~  159 (283)
                      ....+|+|+|.+|||||||+ ++++.... ....     |.|....  ...+ ......+.++||+|...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence            34688999999999999999 99887632 1111     2222111  1111 11224577899999653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.30  E-value=0.0011  Score=59.12  Aligned_cols=86  Identities=10%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA  246 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  246 (283)
                      ...++|.+++|.+..-.-+...+..++-.....  +.+|+||.||+||   .++. .....++.....+..|.+.+.+||
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL---~~~~-~~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDL---LDDE-GMDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGG---CCHH-HHHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccC---CCch-hHHHHHHHHHHHHhCCCcEEEEec
Confidence            468999999887654223444555665444332  5678999999997   2221 100012222333456889999999


Q ss_pred             CCCcCHHHHHHH
Q 023335          247 THNINVNKIFKF  258 (283)
Q Consensus       247 ~~~~~v~~lf~~  258 (283)
                      .++.|++++...
T Consensus       201 ~~~~gl~~L~~~  212 (358)
T 2rcn_A          201 HTQDGLKPLEEA  212 (358)
T ss_dssp             TTTBTHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            999999988764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.20  E-value=0.00017  Score=63.78  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=52.3

Q ss_pred             EEEEeCCCCCCcccc-hhh-----hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc
Q 023335          149 FSIWDVGGDSRSFDH-VPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL  222 (283)
Q Consensus       149 l~i~Dt~G~~~~~~~-~~~-----~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~  222 (283)
                      +.+.|++|....... ...     -.-..|-.+++.|.+...   ++......+.+.  ...-+|+.||.|.      ..
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~------~a  282 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDA------DA  282 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGG------CS
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCC------cc
Confidence            456899997543221 111     012468889999976543   333333333321  2344899999993      11


Q ss_pred             ccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          223 QWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      .   ...+...+...+.++.+++  +|++++++
T Consensus       283 ~---~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          283 R---GGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             C---CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             c---hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence            1   2335566677789888877  66666543

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.72  E-value=0.0025  Score=51.54  Aligned_cols=84  Identities=13%  Similarity=0.004  Sum_probs=53.4

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC---CCCceEEEeecCCCCCCCCCCcc
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQ  223 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~DL~~~l~~~~~  223 (283)
                      +.+.++|+++..  .......+..+|.+|++...+...  ..+..+++.++...   +..+..+|.|+.|-      . .
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~------~-~  144 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE------M-A  144 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT------T-E
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC------C-c
Confidence            567889999865  344556678899999999876444  66666666666543   23333699999993      1 1


Q ss_pred             cchHHHHHHHHHHcCCcEE
Q 023335          224 WTIATQARAYAKAMKATLF  242 (283)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~  242 (283)
                       ....+..++.+.++.+++
T Consensus       145 -~~~~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          145 -TMLNVLKESIKDTGVKAF  162 (206)
T ss_dssp             -EEEHHHHHHHHHHTCCBC
T ss_pred             -hHHHHHHHHHHHcCCcee
Confidence             122344555555665544

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.57  E-value=0.0022  Score=52.59  Aligned_cols=85  Identities=9%  Similarity=0.008  Sum_probs=53.5

Q ss_pred             EEEEEEeCCCC-CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335          147 IAFSIWDVGGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT  225 (283)
Q Consensus       147 ~~l~i~Dt~G~-~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~  225 (283)
                      +.+.++|+++. ..  ......+..+|.+|++...+ ..++..+...++.+.... ..+..+|.|+.|-    .   ...
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~----~---~~~  136 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPP----Y---PSK  136 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCC----T---TSC
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCC----c---cch
Confidence            56788999986 43  23455678899999998764 556666667777776643 3345699999993    1   101


Q ss_pred             hHHHHHHHHHHcCCcEE
Q 023335          226 IATQARAYAKAMKATLF  242 (283)
Q Consensus       226 ~~~~~~~~~~~~~~~~~  242 (283)
                      ...+..+..++++.+++
T Consensus       137 ~~~~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          137 DGDEARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHHHcCCchh
Confidence            23444555555665443

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.37  E-value=0.0039  Score=57.10  Aligned_cols=63  Identities=16%  Similarity=0.066  Sum_probs=36.4

Q ss_pred             EEEEEEEeCCCCCCccc-chh-----hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCC
Q 023335          146 RIAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDD  214 (283)
Q Consensus       146 ~~~l~i~Dt~G~~~~~~-~~~-----~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL  214 (283)
                      .+.+.|+||+|...... +..     ..+..++.+++|+|.+.....   ......+..   ..++ -+|.||.|.
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~---~l~i~gvVlnK~D~  252 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE---ALPLTGVVLTKVDG  252 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH---HSCCCCEEEECTTS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc---cCCCeEEEEecCCC
Confidence            35678899999655422 111     123468899999998754322   222222222   2233 489999994

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.17  E-value=0.0031  Score=60.33  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .|+|+|++|+|||||+ .+.+-
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSC
T ss_pred             eEEEECCCCChHHHHHHHHhCC
Confidence            3999999999999999 77664

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.06  E-value=0.0043  Score=56.92  Aligned_cols=62  Identities=18%  Similarity=0.275  Sum_probs=38.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcC------------------ccc-c--cc-ccceeeeeEEEE--EE-CCeEEEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGN------------------EQE-R--SL-QMAGLNLINKTL--MV-QGARIAFSI  151 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~------------------~~~-~--~~-~t~~~~~~~~~~--~~-~~~~~~l~i  151 (283)
                      .+..-|.|+|.+++|||+|+ .+++.                  .|. .  .. .|.|+-.....+  .. ++....+.+
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl  144 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence            34556789999999999999 88753                  232 1  11 133443222111  11 455788999


Q ss_pred             EeCCCCCC
Q 023335          152 WDVGGDSR  159 (283)
Q Consensus       152 ~Dt~G~~~  159 (283)
                      .||+|...
T Consensus       145 lDTeG~~~  152 (447)
T 3q5d_A          145 MDTQGTFD  152 (447)
T ss_dssp             EEEECCCS
T ss_pred             EcCCcccc
Confidence            99999754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.86  E-value=0.0037  Score=49.99  Aligned_cols=20  Identities=45%  Similarity=0.659  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++++|++|+|||||+ .+.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999 6554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.57  E-value=0.0051  Score=48.95  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|+|++|||||||+ .+.+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999 7765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.39  E-value=0.0064  Score=49.28  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|++|+|||||+ .+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999 6654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.20  E-value=0.0088  Score=47.22  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|++|+|||||+ .+..
T Consensus        11 i~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHcc
Confidence            4789999999999999 6543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.15  E-value=0.0088  Score=47.66  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .|+++|.+|+|||||+ .+.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5889999999999999 76553

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.09  E-value=0.0099  Score=47.91  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      |+|+|++|||||||+ +++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999 88754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.08  E-value=0.01  Score=48.26  Aligned_cols=23  Identities=13%  Similarity=0.397  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .--|+|+|++|||||||+ .+...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhh
Confidence            346889999999999999 87653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.08  E-value=0.009  Score=48.12  Aligned_cols=20  Identities=30%  Similarity=0.297  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|++|||||||+ .+.+
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            4889999999999999 6654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.91  E-value=0.011  Score=48.94  Aligned_cols=21  Identities=14%  Similarity=0.202  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -++|+|++|||||||+ .+.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999 76653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=94.86  E-value=0.011  Score=48.12  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -|+|+|++|||||||+ .+...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999 77654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.84  E-value=0.011  Score=48.01  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|+|++|+|||||+ .+.+
T Consensus        22 i~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999 6654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.79  E-value=0.012  Score=48.50  Aligned_cols=20  Identities=20%  Similarity=0.522  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|++|+|||||+ .+.+
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            5889999999999999 6655

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=94.70  E-value=0.013  Score=47.65  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=18.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|.|+|++|+|||||+ .+.+
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999 5543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.54  E-value=0.017  Score=44.89  Aligned_cols=18  Identities=28%  Similarity=0.296  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHhH-hh
Q 023335          102 KISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~  119 (283)
                      -|+|.|.+||||||+. .+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999 77

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.52  E-value=0.016  Score=45.04  Aligned_cols=20  Identities=25%  Similarity=0.049  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|+|.|.+||||||+. .+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 7643

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.51  E-value=0.017  Score=46.83  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-|+|+|.+|||||||+ .+..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999 7754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.49  E-value=0.017  Score=45.25  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-|+|.|.+|+||||+. .+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            45899999999999999 7765

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.46  E-value=0.016  Score=45.24  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -++++|+.|+|||||+ .+.+.
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999 66553

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.41  E-value=0.016  Score=46.76  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++++|++|+|||||+ .+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            5789999999999999 6654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.38  E-value=0.017  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ..|+|+|.+|+||||++ .+.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999 66543

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.36  E-value=0.02  Score=46.62  Aligned_cols=20  Identities=25%  Similarity=0.380  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ++|+|.|.+||||||+. .+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            37999999999999999 764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.36  E-value=0.018  Score=45.00  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|+|+|.+|+||||+. .+.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999 5543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.34  E-value=0.02  Score=46.63  Aligned_cols=20  Identities=25%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ++|+|.|.+||||||+. .+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            37999999999999999 764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.34  E-value=0.018  Score=45.90  Aligned_cols=20  Identities=15%  Similarity=0.323  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|.+|+|||||+ .+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999 6653

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=94.30  E-value=0.048  Score=49.93  Aligned_cols=60  Identities=17%  Similarity=0.319  Sum_probs=39.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh------------------cCccc---cccc-cceeeeeEEEEEE---CCeEEEEEEEe
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV------------------GNEQE---RSLQ-MAGLNLINKTLMV---QGARIAFSIWD  153 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~------------------~~~~~---~~~~-t~~~~~~~~~~~~---~~~~~~l~i~D  153 (283)
                      -.=|.|+|..++|||+|+ .++                  ...|.   ...+ |.|+-.....+.+   ++..+.+.+.|
T Consensus        67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD  146 (457)
T 4ido_A           67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD  146 (457)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred             eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence            344569999999999999 775                  13343   1122 6676554433222   56788899999


Q ss_pred             CCCCCC
Q 023335          154 VGGDSR  159 (283)
Q Consensus       154 t~G~~~  159 (283)
                      |.|...
T Consensus       147 TEG~~d  152 (457)
T 4ido_A          147 TQGTFD  152 (457)
T ss_dssp             ECCBTC
T ss_pred             ccCCCC
Confidence            999543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.30  E-value=0.02  Score=47.79  Aligned_cols=20  Identities=20%  Similarity=0.316  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999 5543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.25  E-value=0.022  Score=47.49  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+|+|.+|+|||||+ .+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            47999999999999999 766

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.20  E-value=0.02  Score=46.21  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.|+|+|.+|+|||||+ .+.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999 6643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.15  E-value=0.024  Score=44.86  Aligned_cols=21  Identities=14%  Similarity=0.094  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|+|.|.+||||||+. .+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999 6643

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.15  E-value=0.022  Score=46.59  Aligned_cols=21  Identities=19%  Similarity=0.301  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.|+++|+|||||+|.. ++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999 6653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.15  E-value=0.017  Score=45.64  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.++++|++|+|||+|+ .+.+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999 6654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.13  E-value=0.023  Score=45.53  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|+|.|.+||||||+. .+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            6899999999999999 6643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.09  E-value=0.028  Score=45.26  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=18.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|+|.|.+|+||||+. .+..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999 6643

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.09  E-value=0.024  Score=45.72  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -.|+++|.+||||||+. .+.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            37999999999999999 664

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.06  E-value=0.022  Score=45.95  Aligned_cols=21  Identities=24%  Similarity=0.205  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|+|+|.+|+||||+. .+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999 7643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.06  E-value=0.023  Score=47.04  Aligned_cols=20  Identities=20%  Similarity=0.301  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            4679999999999999 5543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.03  E-value=0.027  Score=44.63  Aligned_cols=20  Identities=20%  Similarity=0.139  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|+|.|.+||||||+. .+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 6643

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.98  E-value=0.03  Score=44.43  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=18.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ...|+|.|.+||||||+. .+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            457999999999999999 664

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=93.96  E-value=0.026  Score=44.29  Aligned_cols=21  Identities=29%  Similarity=0.287  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-|++.|.+|+||||+. .+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999 6654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.93  E-value=0.025  Score=44.99  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -++++|.+|+|||||+ +++..
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            5789999999999999 88753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.93  E-value=0.026  Score=47.26  Aligned_cols=20  Identities=35%  Similarity=0.508  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        26 ~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            4779999999999999 5544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.92  E-value=0.027  Score=47.85  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|+|+.|+|||||+ .+.+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            3679999999999999 5544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.87  E-value=0.026  Score=50.17  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQ  124 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~  124 (283)
                      .++++|.+|||||||+ .+.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            6899999999999999 8876543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.86  E-value=0.028  Score=46.20  Aligned_cols=20  Identities=25%  Similarity=0.408  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            3679999999999999 5544

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=93.85  E-value=0.042  Score=44.07  Aligned_cols=19  Identities=21%  Similarity=0.209  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++.|++|+|||+|+ .+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            899999999999999 7754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=93.85  E-value=0.042  Score=48.83  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.0

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHhH-hh
Q 023335           94 TDSDLVSLKISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus        94 ~~~~~~~~KI~vlG~~~vGKSSLi-~~  119 (283)
                      +.......||+++|.+++|||||+ ++
T Consensus         3 ~~~~~~~~k~lllG~~~sGKsT~~kq~   29 (354)
T 2xtz_A            3 MGSGIHIRKLLLLGAGESGKSTIFKQI   29 (354)
T ss_dssp             CCCCCEEEEEEEECSTTSSHHHHHHHH
T ss_pred             ccCCCCceeEEEECCCCCcHHHHHHHH
Confidence            344567899999999999999999 65

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.85  E-value=0.033  Score=43.66  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=17.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -.|+++|.+|+||||+. .+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVA   29 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHH
Confidence            46899999999999999 654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=93.84  E-value=0.035  Score=43.86  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=18.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ...|+++|.+||||||+. .+.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            457999999999999999 665

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.83  E-value=0.031  Score=46.71  Aligned_cols=20  Identities=20%  Similarity=0.506  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999 5544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=93.81  E-value=0.024  Score=46.34  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|+|++|+|||||+ .+.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999 7765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.80  E-value=0.032  Score=46.77  Aligned_cols=20  Identities=20%  Similarity=0.222  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999 5544

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.80  E-value=0.034  Score=44.78  Aligned_cols=22  Identities=23%  Similarity=0.131  Sum_probs=18.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|+|.|.+||||||+. .+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            357999999999999999 6643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.79  E-value=0.029  Score=48.03  Aligned_cols=20  Identities=25%  Similarity=0.630  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            3679999999999999 5544

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.77  E-value=0.11  Score=39.51  Aligned_cols=19  Identities=11%  Similarity=0.127  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|++.|++|+|||++. .+.
T Consensus        29 ~vll~G~~GtGKt~lA~~i~   48 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFH   48 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGC
T ss_pred             cEEEECCCCccHHHHHHHHH
Confidence            4999999999999999 544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.76  E-value=0.032  Score=46.93  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999 5544

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.74  E-value=0.028  Score=45.28  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+|+|+|.+|+||||+. .+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            37999999999999999 6654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.70  E-value=0.03  Score=47.33  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            4779999999999999 5544

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=93.66  E-value=0.029  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=18.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|.|+|..|+|||||+ .+.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999 6544

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.65  E-value=0.031  Score=45.56  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++|+|.|.+||||||+. .+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999 6643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=93.64  E-value=0.03  Score=43.86  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .+++.|++|+|||+|+ .+...
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999 77553

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.64  E-value=0.035  Score=46.03  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999 5544

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.64  E-value=0.032  Score=47.49  Aligned_cols=20  Identities=20%  Similarity=0.531  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+.++|+.|+|||||+ .+.+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            3679999999999999 5544

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=93.63  E-value=0.034  Score=43.91  Aligned_cols=20  Identities=35%  Similarity=0.355  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+++|.+||||||+. .+.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999 764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.62  E-value=0.032  Score=47.38  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHc
Confidence            3679999999999999 5544

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=93.60  E-value=0.036  Score=43.99  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|++.|.+|+||||+. .+..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999 6643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.60  E-value=0.035  Score=49.49  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hh
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~  119 (283)
                      ....||+++|.+++|||||+ ++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45789999999999999999 64

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.58  E-value=0.023  Score=46.89  Aligned_cols=19  Identities=26%  Similarity=0.322  Sum_probs=13.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -++|+|++|+|||||+ .+.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEEEECSCC----CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999 776

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.57  E-value=0.03  Score=45.12  Aligned_cols=21  Identities=19%  Similarity=0.148  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      --|+|+|.+|+|||||. .+.+
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999 5543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.57  E-value=0.033  Score=46.57  Aligned_cols=20  Identities=30%  Similarity=0.517  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            4779999999999999 5544

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.53  E-value=0.027  Score=46.15  Aligned_cols=21  Identities=24%  Similarity=0.143  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .++++|+.|+|||||+ .+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999 66553

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.51  E-value=0.035  Score=46.78  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999 5544

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.51  E-value=0.03  Score=47.51  Aligned_cols=20  Identities=20%  Similarity=0.330  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            6899999999999999 6654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.51  E-value=0.035  Score=46.98  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999 5544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.48  E-value=0.018  Score=45.62  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+.|+|.+|+|||||+ .+.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999 6654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.46  E-value=0.038  Score=46.81  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999 5544

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=93.46  E-value=0.13  Score=39.07  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|++.|++|+|||++. .+..
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999 5544

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=93.45  E-value=0.04  Score=46.02  Aligned_cols=22  Identities=18%  Similarity=0.113  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|.|.+||||||+. .+..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999 7753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.44  E-value=0.035  Score=47.34  Aligned_cols=20  Identities=20%  Similarity=0.263  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            4679999999999999 5544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.43  E-value=0.033  Score=48.39  Aligned_cols=19  Identities=16%  Similarity=0.420  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .++|+|++|+|||||+ .+.
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~  147 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLI  147 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            6899999999999999 554

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.41  E-value=0.036  Score=45.32  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+|.|+|.+|+||||+. .+.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999 5543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.40  E-value=0.036  Score=46.66  Aligned_cols=20  Identities=25%  Similarity=0.375  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            4779999999999999 6555

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.37  E-value=0.041  Score=47.18  Aligned_cols=20  Identities=30%  Similarity=0.275  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            4779999999999999 5544

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.33  E-value=0.033  Score=49.52  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=18.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-+++|+|.+|+|||||+ .+.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999 5544

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.33  E-value=0.042  Score=46.06  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=19.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..+.|.|.|.+|+||||+. .+..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999 6643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.33  E-value=0.038  Score=47.02  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            4779999999999999 6555

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.32  E-value=0.04  Score=44.99  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=18.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ...|+|+|.+||||||+. .+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            357999999999999999 664

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.31  E-value=0.044  Score=43.51  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|+++|.+|+||||+. .+..
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999 6654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.27  E-value=0.037  Score=47.86  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      .++++|++|||||||+ .+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            5789999999999999 776543

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.25  E-value=0.056  Score=43.40  Aligned_cols=20  Identities=35%  Similarity=0.321  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+|.|.+||||||+. .+.
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999 765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=93.24  E-value=0.04  Score=46.50  Aligned_cols=20  Identities=25%  Similarity=0.569  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            4779999999999999 5544

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.23  E-value=0.04  Score=45.31  Aligned_cols=20  Identities=20%  Similarity=0.371  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+|+|.+||||||+. .+.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999 764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.22  E-value=0.048  Score=43.96  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.|.++|.+|+||||+. .+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999 6654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.21  E-value=0.045  Score=42.40  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +|+|.|.+|+||||+. .+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            6999999999999999 6643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.20  E-value=0.039  Score=43.32  Aligned_cols=19  Identities=21%  Similarity=0.380  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +|+|+|.+|+||||+. .+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            6999999999999999 654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.18  E-value=0.045  Score=43.10  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|++.|.+|+||||+. .+.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHH
Confidence            46899999999999999 665

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.18  E-value=0.041  Score=46.76  Aligned_cols=20  Identities=20%  Similarity=0.403  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            4779999999999999 5544

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.14  E-value=0.044  Score=43.35  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+.++|.+|+|||||+ +++.
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999 8765

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.10  E-value=0.038  Score=48.02  Aligned_cols=83  Identities=11%  Similarity=0.104  Sum_probs=45.0

Q ss_pred             EEEEeCCCCCCccc-c-----------hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCC
Q 023335          149 FSIWDVGGDSRSFD-H-----------VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV  216 (283)
Q Consensus       149 l~i~Dt~G~~~~~~-~-----------~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~  216 (283)
                      +.+.||+|...... +           .+......+.++++.|.+....   +...+..+.+.  ....+|+.||.|-  
T Consensus       187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~--~~~t~iivTh~d~--  259 (304)
T 1rj9_A          187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEA--VGLTGVIVTKLDG--  259 (304)
T ss_dssp             EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHH--HCCSEEEEECTTS--
T ss_pred             EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHH--cCCcEEEEECCcc--
Confidence            45789998643221 0           1112345677888999776542   22223333221  1345899999983  


Q ss_pred             CCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335          217 RLPPDLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                          ...   -..+.......+.++.+++
T Consensus       260 ----~a~---gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 ----TAK---GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             ----SCC---CTTHHHHHHHHCCCEEEEE
T ss_pred             ----ccc---ccHHHHHHHHHCCCeEEEe
Confidence                111   1123455566788877765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.09  E-value=0.049  Score=46.79  Aligned_cols=21  Identities=29%  Similarity=0.178  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-|+|.|.+||||||+. .+..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999 7753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.09  E-value=0.048  Score=46.31  Aligned_cols=20  Identities=35%  Similarity=0.579  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999 5544

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=93.07  E-value=0.032  Score=43.00  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      --++++|++|+|||+|+ .+.+
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999 6654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.04  E-value=0.019  Score=49.98  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      -.++++|.+|||||||+ .+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            37899999999999999 776543

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=93.03  E-value=0.04  Score=44.87  Aligned_cols=20  Identities=35%  Similarity=0.582  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|++|+|||||+ .+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999 8764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.02  E-value=0.048  Score=44.82  Aligned_cols=19  Identities=21%  Similarity=0.146  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|+|.|.+||||||+. .+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            6899999999999999 664

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.00  E-value=0.04  Score=48.01  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..-|.|+|++|+|||||+ .+.+
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHh
Confidence            467889999999999999 5543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=92.97  E-value=0.061  Score=42.46  Aligned_cols=20  Identities=25%  Similarity=0.223  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+|.|.+||||||+. .+.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            46999999999999999 664

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=92.93  E-value=0.052  Score=43.47  Aligned_cols=22  Identities=23%  Similarity=0.161  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|+|.|.+||||||+. .+..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            357999999999999999 6654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=92.93  E-value=0.042  Score=47.66  Aligned_cols=21  Identities=29%  Similarity=0.246  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      --++++|+.||||||++ .+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            36889999999999999 7643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=92.90  E-value=0.069  Score=42.26  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|+++|.+|+||||+. .+..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999 6643

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=92.87  E-value=0.064  Score=43.27  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|.|+|.+|+|||||. .+.+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999 6654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.85  E-value=0.046  Score=47.33  Aligned_cols=19  Identities=26%  Similarity=0.438  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -++++|++|||||||+ .+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999 776

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=92.81  E-value=0.046  Score=45.69  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++++|++|+|||+|+ .+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            999999999999999 6654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.81  E-value=0.065  Score=43.18  Aligned_cols=21  Identities=24%  Similarity=0.110  Sum_probs=18.2

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ...|+|.|.+||||||+. .+.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHH
Confidence            357999999999999999 664

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.78  E-value=0.04  Score=47.90  Aligned_cols=20  Identities=20%  Similarity=0.482  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhHhhhc
Q 023335          102 KISLLGDCQIGKTSFVKYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~  121 (283)
                      .++|+|+.|+|||||++++.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~  101 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLF  101 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHH
Confidence            57899999999999994443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=92.71  E-value=0.022  Score=46.14  Aligned_cols=20  Identities=35%  Similarity=0.451  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+|.|.+|+||||++ .+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            4889999999999999 6643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.63  E-value=0.055  Score=46.63  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999 5544

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=92.62  E-value=0.046  Score=44.71  Aligned_cols=20  Identities=25%  Similarity=0.233  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+|+|.+||||||+. .+.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            46999999999999999 664

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=92.61  E-value=0.042  Score=42.92  Aligned_cols=21  Identities=38%  Similarity=0.442  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .+++.|++|+|||+|+ .+...
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999 76543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=92.60  E-value=0.051  Score=45.74  Aligned_cols=20  Identities=20%  Similarity=0.202  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+|+|.+|+|||||. .+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999 7743

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=92.60  E-value=0.049  Score=46.43  Aligned_cols=19  Identities=26%  Similarity=0.279  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++++|++|+|||+|+ .+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            999999999999999 6654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=92.57  E-value=0.045  Score=43.04  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=13.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+|.|.+||||||+. .+.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CEEEEECCC----CHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            46999999999999999 664

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=92.57  E-value=0.061  Score=42.57  Aligned_cols=20  Identities=30%  Similarity=0.195  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|++.|.+||||||+. .+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 6644

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=92.52  E-value=0.053  Score=43.90  Aligned_cols=20  Identities=20%  Similarity=0.177  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|++|+|||||+ .+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999 8876

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=92.48  E-value=0.057  Score=45.54  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|++.|.+||||||+. .+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999 6653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=92.48  E-value=0.059  Score=43.99  Aligned_cols=20  Identities=20%  Similarity=0.152  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+|+|.+|+||||+. .+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999 664

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=92.46  E-value=0.053  Score=48.20  Aligned_cols=20  Identities=25%  Similarity=0.489  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        32 ~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHhc
Confidence            3679999999999999 5554

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=92.44  E-value=0.061  Score=42.69  Aligned_cols=20  Identities=30%  Similarity=0.235  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|++.|.+||||||+. .+.
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            47999999999999999 664

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=92.42  E-value=0.055  Score=44.50  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -++|+|++|+|||||+ .+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999 88763

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=92.40  E-value=0.062  Score=42.76  Aligned_cols=21  Identities=29%  Similarity=0.268  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|+|.|.+|+||||+. .+..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999 6643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=92.38  E-value=0.051  Score=46.60  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -++|+|.+|+|||||+ .+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999 77653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=92.37  E-value=0.056  Score=44.16  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.+++.|++|+|||+|+ .+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999 7654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=92.30  E-value=0.066  Score=41.61  Aligned_cols=19  Identities=21%  Similarity=0.256  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|+|.|.+||||||+. .+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            5899999999999999 664

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=92.29  E-value=0.065  Score=43.24  Aligned_cols=22  Identities=32%  Similarity=0.267  Sum_probs=18.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|+|.|.+||||||+. .+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999 6653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=92.28  E-value=0.062  Score=47.73  Aligned_cols=20  Identities=35%  Similarity=0.564  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        43 ~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            3679999999999999 5554

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=92.25  E-value=0.073  Score=42.48  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ...|.|.|.+||||||+. .+...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            467999999999999999 76543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=92.24  E-value=0.068  Score=44.82  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ...|+++|.+|+||||+. .+.
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~   53 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQ   53 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            357999999999999999 664

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=92.20  E-value=0.083  Score=43.49  Aligned_cols=22  Identities=36%  Similarity=0.351  Sum_probs=17.0

Q ss_pred             eeE-EEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLK-ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~K-I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..| |+|+|+|||||+|.. ++..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345 457899999999999 6653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=92.19  E-value=0.064  Score=47.70  Aligned_cols=20  Identities=35%  Similarity=0.526  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHC
Confidence            3779999999999999 5544

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=92.17  E-value=0.066  Score=47.69  Aligned_cols=20  Identities=30%  Similarity=0.571  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHhc
Confidence            3779999999999999 5554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=92.13  E-value=0.062  Score=44.79  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|.|+|+.|+|||||+ .+.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999 6644

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.13  E-value=0.066  Score=42.13  Aligned_cols=19  Identities=16%  Similarity=0.249  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -.+|+|+.|+|||||+ .+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999 653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.12  E-value=0.1  Score=43.04  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..-|+|.|..|+|||||+ .+.+
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999 6654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=92.09  E-value=0.062  Score=47.81  Aligned_cols=21  Identities=29%  Similarity=0.246  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      --|+++|..||||||++ .+.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            46889999999999999 7643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=92.09  E-value=0.084  Score=45.48  Aligned_cols=21  Identities=24%  Similarity=0.127  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ...|.|+|.+|+|||||+ .+.
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            467999999999999999 553

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=92.08  E-value=0.075  Score=43.88  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|+|+|.+|+||||+. .+.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999 664

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=92.08  E-value=0.062  Score=43.34  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=18.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|.|+|.+|+|||||+ .+.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999 6643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.08  E-value=0.064  Score=45.56  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++++|++|+|||+|+ .+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            899999999999999 6654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=92.07  E-value=0.061  Score=47.78  Aligned_cols=20  Identities=15%  Similarity=0.263  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|+|+|+.|+|||||+ .+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999 6654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=92.06  E-value=0.069  Score=47.87  Aligned_cols=20  Identities=20%  Similarity=0.463  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        31 ~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHc
Confidence            3679999999999999 5544

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=92.03  E-value=0.07  Score=47.54  Aligned_cols=19  Identities=16%  Similarity=0.287  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.|+|+.|+|||||+ .+.+
T Consensus        57 ~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEcCCCchHHHHHHHHhc
Confidence            679999999999999 5544

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=92.02  E-value=0.067  Score=42.89  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.+++.|++|+|||+|+ .+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999 6654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.00  E-value=0.073  Score=41.96  Aligned_cols=19  Identities=26%  Similarity=0.303  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|+|+|.+|+||||+. .+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            5999999999999998 664

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=91.96  E-value=0.07  Score=47.68  Aligned_cols=20  Identities=35%  Similarity=0.456  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcHHHHHHHHHHc
Confidence            3679999999999999 5544

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=91.95  E-value=0.072  Score=47.60  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        39 ~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            3679999999999999 5544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=91.77  E-value=0.069  Score=49.48  Aligned_cols=92  Identities=10%  Similarity=0.090  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCCCCccc-chh---hh---c-----ccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          147 IAFSIWDVGGDSRSFD-HVP---IA---C-----KDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~-~~~---~~---~-----~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      +.+.+.||+|...... +..   ..   .     ...+-++||.|.+... .+..    ...+...  -....+|.||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~--~~itgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEA--VGLTGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHH--TCCSEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhh--cCCCEEEEEcCC
Confidence            3467899999754321 110   01   1     1246788999976542 2222    2222221  124478999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      -      ..+   -..+..++..++.++.++.  +|++++++
T Consensus       450 ~------tak---gG~~lsi~~~~~~PI~fig--~Ge~vdDL  480 (503)
T 2yhs_A          450 G------TAK---GGVIFSVADQFGIPIRYIG--VGERIEDL  480 (503)
T ss_dssp             G------CSC---CTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             C------ccc---ccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence            2      111   2235566667788877643  34555443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=91.74  E-value=0.073  Score=43.14  Aligned_cols=20  Identities=25%  Similarity=0.263  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|.|++|+|||+|+ .+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999 7754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=91.71  E-value=0.076  Score=43.72  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|++|+|||+|+ +++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999998 7754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=91.70  E-value=0.07  Score=47.67  Aligned_cols=20  Identities=20%  Similarity=0.330  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|++|+|||||+ .+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999 6654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=91.67  E-value=0.08  Score=46.45  Aligned_cols=20  Identities=20%  Similarity=0.468  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            6889999999999999 6554

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=91.66  E-value=0.061  Score=47.62  Aligned_cols=20  Identities=35%  Similarity=0.521  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        28 ~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCccHHHHHHHHHc
Confidence            4789999999999999 5544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=91.64  E-value=0.077  Score=44.36  Aligned_cols=20  Identities=25%  Similarity=0.394  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|++|+|||+|+ .+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            4999999999999999 6654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=91.62  E-value=0.074  Score=46.60  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|++|+|||||+ .+.+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            4889999999999999 5543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=91.59  E-value=0.072  Score=46.18  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|.|+|..|+|||||+ .+.+
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999 6654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=91.55  E-value=0.089  Score=42.77  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      ..|+|+|++|+|||+|. .+....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            46899999999999999 887653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=91.54  E-value=0.1  Score=45.61  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .+-|.|+|.+|||||||+ .+.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999 653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=91.44  E-value=0.097  Score=43.90  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..|.|+|.+|+||||++ .+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            47999999999999999 665

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=91.42  E-value=0.08  Score=47.04  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999 6654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=91.42  E-value=0.085  Score=43.67  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..-|++.|.+|+||||++ .+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999 6654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=91.41  E-value=0.27  Score=44.47  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..-|+|+|.+|+||||+. ++..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            345889999999999999 7764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=91.40  E-value=0.094  Score=41.17  Aligned_cols=21  Identities=24%  Similarity=0.189  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|++.|.+|+||||+. .+..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999 5543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=91.36  E-value=0.092  Score=42.57  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-|+++|.+|+||||+. .+..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999 6543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=91.21  E-value=0.088  Score=47.34  Aligned_cols=20  Identities=25%  Similarity=0.655  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            4789999999999999 5544

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=91.19  E-value=0.12  Score=42.93  Aligned_cols=21  Identities=29%  Similarity=0.243  Sum_probs=18.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .+||++.|.+|||||++. ++.
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la   27 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAA   27 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHH
Confidence            689999999999999997 653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=91.18  E-value=0.12  Score=42.07  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=18.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+.|+|.|.+||||||+. .+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999 6643

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=91.10  E-value=0.093  Score=46.42  Aligned_cols=21  Identities=14%  Similarity=0.477  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ++.++|+.|+|||||+ .+.+.
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999 77654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=91.08  E-value=0.086  Score=44.78  Aligned_cols=20  Identities=15%  Similarity=0.180  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|+|++|+|||||+ .+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999 8775

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.07  E-value=0.11  Score=39.90  Aligned_cols=18  Identities=22%  Similarity=0.401  Sum_probs=15.7

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      .+|+|+.|+|||||+ .+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            579999999999999 753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=90.94  E-value=0.12  Score=43.10  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .+.|+|.|.+|+||||+. .+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999 664

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=90.90  E-value=0.12  Score=46.56  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hh
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~  119 (283)
                      .....+|++++|...+||||++ ++
T Consensus        36 ~~~~~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           36 VYRATHRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             CCTTEEEEEEEESTTSSHHHHHHHH
T ss_pred             HhhccceEEEecCCCCchhhHHHHH
Confidence            3456899999999999999999 54

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=90.89  E-value=0.062  Score=47.69  Aligned_cols=20  Identities=35%  Similarity=0.690  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        33 ~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            4779999999999999 5544

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=90.80  E-value=0.095  Score=45.26  Aligned_cols=85  Identities=11%  Similarity=0.069  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCCCCccc-chh---hhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFD-HVP---IACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP  220 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~-~~~---~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~  220 (283)
                      ..+.|.||+|...... ...   ..+.  ..+.+++|+|.+..  .+.+..+.+.+.   .-...-+|.||.|.    . 
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~~giVltk~D~----~-  252 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPVNQYIFTKIDE----T-  252 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCCCEEEEECTTT----C-
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCCCEEEEeCCCc----c-
Confidence            4578899999765332 111   1222  36788999987643  334444433322   11122477799994    1 


Q ss_pred             CcccchHHHHHHHHHHcCCcEEEEc
Q 023335          221 DLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                       ..   ...+...+...+.++..++
T Consensus       253 -~~---~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          253 -TS---LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             -SC---CHHHHHHHHTCSCCCSEEC
T ss_pred             -cc---hhHHHHHHHHHCcCEEEEE
Confidence             11   2355566777888766654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=90.77  E-value=0.13  Score=39.83  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -.|+|.|.+||||||+. .+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            36889999999999999 653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=90.77  E-value=0.11  Score=44.44  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-|++.|.+|+||||+. .+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999 7764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=90.76  E-value=0.099  Score=47.46  Aligned_cols=20  Identities=20%  Similarity=0.197  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+|+|+.|+|||||+ .+++
T Consensus       169 ii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            4889999999999999 7664

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=90.58  E-value=0.11  Score=43.19  Aligned_cols=20  Identities=30%  Similarity=0.243  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|++.|++|+|||+|+ .+..
T Consensus        41 ~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 6654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=90.54  E-value=0.11  Score=44.02  Aligned_cols=20  Identities=30%  Similarity=0.265  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|++|+|||+|+ .+.+
T Consensus        53 ~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            5999999999999999 6643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=90.52  E-value=0.087  Score=43.07  Aligned_cols=20  Identities=20%  Similarity=0.434  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|+||+|||+++ .+.+
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999998 7754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=90.47  E-value=0.11  Score=44.99  Aligned_cols=86  Identities=17%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCCCCcccc-h------hhhc-----ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          147 IAFSIWDVGGDSRSFDH-V------PIAC-----KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~-~------~~~~-----~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      ..+.+.||+|....... .      ...+     ...+.+++|.|.+..  .+.+.. ...+.+.  -.+.-+|.||.|-
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~i~gvVlTk~D~  261 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VNVTGIILTKLDG  261 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SCCCEEEEECGGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CCCCEEEEeCCCC
Confidence            34788999996432211 0      0111     247889999998633  122221 2222221  2233588899993


Q ss_pred             CCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335          215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSA  246 (283)
Q Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  246 (283)
                            ..   .-..+..++...+.|+.+++.
T Consensus       262 ------~~---~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          262 ------TA---KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             ------CS---CTTHHHHHHHHHCCCEEEEEC
T ss_pred             ------cc---chHHHHHHHHHHCCCEEEEeC
Confidence                  11   123366777788988887754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=90.40  E-value=0.11  Score=44.25  Aligned_cols=21  Identities=24%  Similarity=0.197  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.+++.|++|+|||+|+ .+.+
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            36899999999999999 6654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=90.36  E-value=0.11  Score=43.71  Aligned_cols=20  Identities=25%  Similarity=0.212  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -.|+++|.+|+||||+. .+.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La   69 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMA   69 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            36999999999999999 653

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=90.14  E-value=0.081  Score=49.36  Aligned_cols=17  Identities=24%  Similarity=0.417  Sum_probs=15.4

Q ss_pred             EEEEcCCCCcHHHhH-hh
Q 023335          103 ISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~  119 (283)
                      .+|+|..|+|||+|+ .+
T Consensus        63 n~i~G~NGaGKS~lleAl   80 (517)
T 4ad8_A           63 CAFTGETGAGKSIIVDAL   80 (517)
T ss_dssp             EEEEESHHHHHHHHTHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            669999999999999 65

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.10  E-value=0.13  Score=47.99  Aligned_cols=20  Identities=20%  Similarity=0.306  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+++
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            4899999999999999 6654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=90.08  E-value=0.11  Score=47.66  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+.|+|||||+ .+.+
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999999 5544

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=90.01  E-value=0.14  Score=40.59  Aligned_cols=23  Identities=17%  Similarity=0.486  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      .=|++.|++|+||||+. .++...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            35899999999999999 887643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=89.98  E-value=0.12  Score=45.33  Aligned_cols=20  Identities=30%  Similarity=0.335  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|.|++|+|||+|+ .+.+
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999 7764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=89.88  E-value=0.17  Score=43.25  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .+.|+|.|.+||||||+. .+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            467999999999999999 665

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=89.85  E-value=0.11  Score=45.30  Aligned_cols=21  Identities=24%  Similarity=0.282  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -++|+|..|+|||||+ .+.+.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            3579999999999999 87754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=89.80  E-value=0.13  Score=44.49  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+++.|++|+|||+|+ .+.+
T Consensus        39 ~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            4889999999999999 6654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=89.79  E-value=0.13  Score=44.12  Aligned_cols=21  Identities=19%  Similarity=0.161  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-+++.|+||+|||+|+ .+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45778899999999999 6643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=89.78  E-value=0.14  Score=46.80  Aligned_cols=21  Identities=14%  Similarity=0.392  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ++.|+|+.|+|||||+ .+.+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6889999999999999 66653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=89.70  E-value=0.14  Score=44.28  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -++|.|.+|+|||||+ .+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999 87653

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=89.59  E-value=0.17  Score=43.24  Aligned_cols=21  Identities=38%  Similarity=0.600  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..+++.|++|+|||+|+ .+..
T Consensus        68 ~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999 6543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=89.58  E-value=0.19  Score=42.21  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=18.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...|+|.|..|+||||++ .+..
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999 6543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=89.57  E-value=0.16  Score=41.68  Aligned_cols=20  Identities=30%  Similarity=0.584  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      =++|.|.||+|||+|+ +++.
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            4789999999999999 8764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=89.56  E-value=0.14  Score=45.72  Aligned_cols=20  Identities=20%  Similarity=0.240  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|++|+|||||+ .+.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            6889999999999999 6653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=89.55  E-value=0.14  Score=43.97  Aligned_cols=20  Identities=20%  Similarity=0.240  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|++.|++|+|||+|+ .+.+
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHH
Confidence            5899999999999999 6654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=89.50  E-value=0.15  Score=43.42  Aligned_cols=20  Identities=25%  Similarity=0.519  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|++|+|||+|+ .+..
T Consensus        52 ~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           52 NILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 6643

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=89.42  E-value=2.6  Score=34.29  Aligned_cols=85  Identities=8%  Similarity=0.012  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccc
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWT  225 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~  225 (283)
                      +.+.|+|+++...  ......+..+|.+|++...+ ..+...+..+++.++........ -+|.|+.|-.       ...
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~-------~~~  188 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN-------SRI  188 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC-------TTS
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC-------CCC
Confidence            5578899987542  34555678899999998764 66777777888888765543333 5999999931       111


Q ss_pred             hHHHHHHHHHHcCCcEEEE
Q 023335          226 IATQARAYAKAMKATLFFS  244 (283)
Q Consensus       226 ~~~~~~~~~~~~~~~~~e~  244 (283)
                      ..   +.+.+.++.+++.+
T Consensus       189 ~~---~~~~~~~~~~v~~~  204 (245)
T 3ea0_A          189 TS---DEIEKVIGRPISKR  204 (245)
T ss_dssp             CH---HHHHHHHTSCEEEE
T ss_pred             CH---HHHHHHhCCCeEEE
Confidence            12   33445567776654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=89.34  E-value=0.16  Score=44.86  Aligned_cols=20  Identities=35%  Similarity=0.396  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|.|++|+|||+|+ .+.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 7764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=89.34  E-value=0.16  Score=42.82  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=18.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ...+++.|++|+|||+|+ .+..
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            457999999999999999 7654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=89.24  E-value=0.18  Score=44.28  Aligned_cols=20  Identities=20%  Similarity=0.400  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+|+|+.|||||+|. .+..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999 7754

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=89.24  E-value=0.15  Score=44.24  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|.|++|+|||+|+ .+..
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~   52 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGIN   52 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            6889999999999999 8764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=89.22  E-value=0.17  Score=47.81  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      +++++|+.|+|||||++++.+
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            588999999999999944433

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=89.11  E-value=0.15  Score=42.28  Aligned_cols=25  Identities=24%  Similarity=0.169  Sum_probs=19.8

Q ss_pred             eeeEEEEE--cCCCCcHHHhH-hhhcCc
Q 023335           99 VSLKISLL--GDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus        99 ~~~KI~vl--G~~~vGKSSLi-~~~~~~  123 (283)
                      ++=||+|+  |.++.|||.|+ ++.+..
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhccc
Confidence            34466666  99999999999 988764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=89.08  E-value=0.2  Score=41.29  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=19.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ....|.|+|.+|+||||+. .+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999 6643

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=89.06  E-value=0.2  Score=39.90  Aligned_cols=20  Identities=25%  Similarity=0.532  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ++|+|.+++|||+|. ++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999 88755

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.06  E-value=0.16  Score=44.39  Aligned_cols=19  Identities=21%  Similarity=0.282  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++.|++|+||||++ .+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            899999999999999 6655

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=88.99  E-value=0.19  Score=47.59  Aligned_cols=21  Identities=14%  Similarity=0.426  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      .++++|+.|+|||||++++.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            578999999999999944433

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=88.93  E-value=0.17  Score=46.74  Aligned_cols=19  Identities=26%  Similarity=0.419  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -++|+|+.|+|||||+ .+.
T Consensus        31 ~~~liG~nGsGKSTLl~~l~   50 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFV   50 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHh
Confidence            4789999999999999 654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.91  E-value=0.2  Score=46.98  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++++|+.|+|||||+ .+.+
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~G   69 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAG   69 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            6889999999999999 5544

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=88.88  E-value=0.19  Score=40.04  Aligned_cols=19  Identities=26%  Similarity=0.368  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++.|++|+||||++ ++..
T Consensus         6 ~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            6 TVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            678999999999998 7764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=88.76  E-value=0.19  Score=44.58  Aligned_cols=18  Identities=22%  Similarity=0.246  Sum_probs=15.9

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      .+|+|+.|+|||||+ .++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            559999999999999 765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=88.66  E-value=0.2  Score=43.76  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|+|+|++|||||||. .+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999 7754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=88.66  E-value=0.2  Score=47.37  Aligned_cols=20  Identities=20%  Similarity=0.494  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++++|+.|+|||||+ .+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            5889999999999999 5443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=88.66  E-value=0.19  Score=43.03  Aligned_cols=20  Identities=25%  Similarity=0.464  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|++|+|||+++ .+..
T Consensus        49 ~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            6899999999999999 6654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=88.54  E-value=0.18  Score=44.57  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -+.|+|++|+|||||+ .++..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4779999999999999 87654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.38  E-value=0.19  Score=43.85  Aligned_cols=20  Identities=25%  Similarity=0.316  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      +++.|++|+||||++ .+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999 76553

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=88.35  E-value=0.17  Score=44.41  Aligned_cols=21  Identities=24%  Similarity=0.184  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.++|.|++|+|||+|+ .+..
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999 7654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=88.33  E-value=0.2  Score=43.66  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.|++.|++|+|||+|+ .+.+
T Consensus        46 ~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            36899999999999999 6654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.21  E-value=0.22  Score=46.67  Aligned_cols=20  Identities=30%  Similarity=0.577  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+.++|+.|+|||||+ .+.+
T Consensus        27 i~gLiGpNGaGKSTLlkiL~G   47 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAG   47 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999 5554

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=88.18  E-value=0.24  Score=40.03  Aligned_cols=17  Identities=24%  Similarity=0.389  Sum_probs=15.1

Q ss_pred             EEEEcCCCCcHHHhH-hh
Q 023335          103 ISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~  119 (283)
                      .+|+|+.|+|||||+ .+
T Consensus        26 ~~I~G~NgsGKStil~ai   43 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAI   43 (203)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            578999999999999 65

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=88.18  E-value=0.22  Score=43.79  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-|+|+|++|||||||. ++..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            35889999999999999 7654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=88.15  E-value=0.21  Score=47.46  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      +++++|+.|+|||||++++.+
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            688999999999999944433

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.12  E-value=0.21  Score=43.46  Aligned_cols=20  Identities=25%  Similarity=0.308  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      +++.|++|+|||+++ .+.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999 76543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=88.09  E-value=0.3  Score=39.19  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=19.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..+.|.+.|..||||||+. .+..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999 6643

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=87.97  E-value=0.2  Score=43.98  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.+++.|++|+|||+|+ .+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999 6643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=87.95  E-value=0.24  Score=47.00  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      +++++|+.|+|||||++++.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999944433

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=87.93  E-value=0.28  Score=42.77  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+|+|++|||||+|. .+..
T Consensus         5 ~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            4789999999999999 8754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=87.91  E-value=0.25  Score=39.43  Aligned_cols=20  Identities=20%  Similarity=0.355  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|.|.|.+|+||||+. .+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            6889999999999999 6643

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=87.90  E-value=0.22  Score=43.26  Aligned_cols=21  Identities=24%  Similarity=0.206  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.|++.|++|+|||+|+ .+.+
T Consensus        52 ~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            46999999999999999 6654

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=87.85  E-value=0.22  Score=45.80  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -.++++|++|+|||+++ .+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999 66543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=87.82  E-value=0.24  Score=40.12  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.|++.|.+|+||||+. .+..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            56999999999999999 6543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=87.76  E-value=0.25  Score=42.77  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-.+++.|++|+|||+|+ .+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999 7654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=87.74  E-value=0.23  Score=44.80  Aligned_cols=19  Identities=21%  Similarity=0.468  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -+.|+|++|+|||||+ .++
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            4789999999999999 775

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=87.56  E-value=0.11  Score=43.49  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++.|++|+|||+|+ .+.+
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            789999999999999 6654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=87.46  E-value=0.36  Score=40.32  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|++.|++|+|||+|+ .+..
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~   51 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHY   51 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHHHHHH
Confidence            35899999999999999 6654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=87.45  E-value=0.99  Score=38.78  Aligned_cols=19  Identities=21%  Similarity=0.078  Sum_probs=14.4

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++-|++|+|||+++ .+.+
T Consensus        51 ~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHH
Confidence            445566999999999 7653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=87.44  E-value=0.23  Score=43.74  Aligned_cols=20  Identities=25%  Similarity=0.135  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++|.|++|+|||+|+ .+..
T Consensus        47 ~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           47 SNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999 7754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=87.36  E-value=0.27  Score=42.62  Aligned_cols=21  Identities=29%  Similarity=0.380  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      =++|.|.||+|||+|+ .+..+
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999 88643

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=87.34  E-value=0.35  Score=42.04  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+|+|++|||||+|. .+..
T Consensus        12 ~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           12 AIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            4789999999999999 8754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=87.34  E-value=0.27  Score=42.72  Aligned_cols=19  Identities=26%  Similarity=0.399  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|++.|++|+|||+|+ .+.
T Consensus        57 ~vll~G~~GtGKT~la~~ia   76 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIIS   76 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHH
Confidence            4899999999999999 664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=87.30  E-value=0.27  Score=46.85  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+.++|+.|+|||||+ .+.+
T Consensus       105 i~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            5889999999999999 5554

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=87.28  E-value=0.25  Score=43.05  Aligned_cols=102  Identities=15%  Similarity=0.154  Sum_probs=56.8

Q ss_pred             EEEEEEeCCCCCCccc-chh------hh-----cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCC
Q 023335          147 IAFSIWDVGGDSRSFD-HVP------IA-----CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFD  213 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~-~~~------~~-----~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~D  213 (283)
                      +.+.|+||+|...... +..      ..     -..+|.+++|.|.+..  .+.    +..++...+...+ =+|.||.|
T Consensus       192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~----l~~~~~~~~~~~i~GvVltk~d  265 (320)
T 1zu4_A          192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNG----VIQAEEFSKVADVSGIILTKMD  265 (320)
T ss_dssp             CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHH----HHHHHHHTTTSCCCEEEEECGG
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHH----HHHHHHHhhcCCCcEEEEeCCC
Confidence            5678899999755321 110      01     1347899999998732  222    2233344443334 38999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH----HHHHHHHhC
Q 023335          214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF----KFIMAKLFN  265 (283)
Q Consensus       214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf----~~l~~~i~~  265 (283)
                      -      ...   ...+..+....+.++.++.  .|++++++-    +.+++.++.
T Consensus       266 ~------~~~---~g~~~~~~~~~~~Pi~~i~--~Ge~~~dl~~~~~~~~~~~ll~  310 (320)
T 1zu4_A          266 S------TSK---GGIGLAIKELLNIPIKMIG--VGEKVDDLLAFDIDQYIVHLSS  310 (320)
T ss_dssp             G------CSC---TTHHHHHHHHHCCCEEEEE--CSSSTTCEEECCHHHHHHHHTG
T ss_pred             C------CCc---hhHHHHHHHHHCcCEEEEe--CCCCccccccCCHHHHHHHHhC
Confidence            3      111   1245566667788876654  344544432    455555554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=87.24  E-value=0.28  Score=46.03  Aligned_cols=20  Identities=50%  Similarity=0.750  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+.|+|+.|+|||||+ .+.+
T Consensus       296 i~~i~G~nGsGKSTLl~~l~G  316 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVG  316 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            3679999999999999 5554

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.23  E-value=0.25  Score=44.89  Aligned_cols=20  Identities=30%  Similarity=0.341  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|++.|+||+|||+|+ .+.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            4999999999999999 6654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=87.16  E-value=0.3  Score=40.51  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=18.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..+++.|+|.+||||||+. ++..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            4578999999999999999 7643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=87.16  E-value=0.3  Score=45.79  Aligned_cols=21  Identities=43%  Similarity=0.662  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .+.|+|+.|+|||||+ .+.+-
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999 66553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-20
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-18
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-18
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-18
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-18
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-16
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-16
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-16
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-15
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-15
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	7e-14
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-13
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-13
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-13
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-13
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-13
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-12
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	4e-12
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-12
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-12
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-12
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-11
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-11
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-11
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-11
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-11
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-11
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-11
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-10
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-10
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-10
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-10
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	9e-10
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-09
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-09
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-09
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-09
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-08
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-08
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-08
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-08
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-08
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-07
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-07
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-07
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-07
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-06
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-05
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	6e-05
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-04
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	0.001
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.7 bits (206), Expect = 2e-20
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 6/165 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GKT  + ++  +      +   G++   +T+ + G RI   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R         + A+ I+ ++D+T+  + ++I  W     +     +  +I     D    
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV--- 123

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             D +     +    A         +SA  NINV   F  +   +
Sbjct: 124 -NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (191), Expect = 3e-18
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           +KI L+GD  +GK+  + ++V ++     +   G++   KT+ + G ++   IWD  G  
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 217
           R         + A+ I+ ++D+T   T  +I  W+    +       + L+G K D   R
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                    A Q  A AK +      SSA ++ NVN+IF  +   +
Sbjct: 123 ------VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 4e-18
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 6/166 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R         + A   L ++D+T R T N +  W ++AR        I++     D    
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL--- 121

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
               +     +A+ +A+        +SA    NV   F     K++
Sbjct: 122 -EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 5e-18
 Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 99  VSLKISLLGDCQIGKTSFV-KYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           V+ K+ L+GD  +GKT  + ++          +   G++  NK L V G ++   +WD  
Sbjct: 5   VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 64

Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
           G  R         +DA A+L ++D+T++ + ++I  W +E  ++ Q  + +++     D 
Sbjct: 65  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD- 123

Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                  +          AK        +SA   +NV+  F  I  +L
Sbjct: 124 ---SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 7e-18
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 8/168 (4%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI L+G+  +GKT  V ++             G++ + KT+ + G ++   IWD  G  
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 217
           R         + A A++  +D+T   +   +  W  E  ++    +  +L+G K D   R
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
                +     +A  +++A       +SA  + NV K+F  +  +L +
Sbjct: 126 -----REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 1e-16
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 217
           R         + AV  L ++D+    T  ++  W  E R    + I I L+G K D    
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
                +     +ARA+A+    +   +SA  + NV + FK I+ +++ +
Sbjct: 125 -----RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 1e-16
 Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 95  DSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIW 152
           +  L +LKI ++G+  +GK+S + ++  +          G++   KT+ V G +   +IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGT 210
           D  G  R     P   + A  ++ ++D+T R T   +  W +E   +      + +L+G 
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
           K D   R     +         +A+        +SA     V   F+ ++ K+   P
Sbjct: 122 KIDKENREVDRNEG------LKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 172

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (177), Expect = 5e-16
 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ L+G+  +GK+  + ++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R         + +  I+ ++D+T + + N +  W  E  ++  + +  L+     D    
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL--- 123

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
             D +      A+ +A A K     +SA  + NV   F  +  ++  
Sbjct: 124 -KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI ++G+  +GKTSF+ +Y  +      +   G++   KT+     RI   IWD  G  
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 217
           R         + A+  + M+D+T+  + N++  W ++ + ++     + L+G K D    
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 121

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
              D +   + + R  A  +    F +SA  NINV + F+ ++  +
Sbjct: 122 -MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R         + A   L ++D+TSR T N++  W ++AR      I I++     D    
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL--- 122

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
               +     +A  +A+  +     +SA    NV + F     K+ N
Sbjct: 123 -DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 7e-14
 Identities = 27/165 (16%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           K+ +LG   +GK++   ++V             +   K + V  +     I D  G  + 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPI-LIGTKFDDFVRL 218
                +  K+    + ++ L ++ +   I     +  +  +   +P+ L+G K D     
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE- 123

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
               +   +++ RA A+        +SA     V+++F  I+ ++
Sbjct: 124 ----REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 1e-13
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S K+ LLG+  +GKTS V +Y  N+  ++ +   G + + K L + G R+  +IWD  G 
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 217
            R     PI  +D+   + ++D+T   +   +  W  E RK     I + I     D   
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-- 120

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                +     +A +YA+++ A  + +SA  N  + ++F  +  ++
Sbjct: 121 --EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 6/167 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K  ++GD  +GK+  + ++     Q       G+    + + + G +I   IWD  G  
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
                     + A   L ++D+T R T N +  W  +AR+ + + + I++     D    
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL--- 120

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
               +     +  A+A+        +SA    NV + F     +++ 
Sbjct: 121 -ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (156), Expect = 2e-13
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           S+K+ LLG+  +GK+S V ++V N+  E      G   + + + +    + F IWD  G 
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 217
            R     P+  ++A A L ++D+T   +      W  E  +     I I +     D ++
Sbjct: 63  ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 122

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
              + +     +    A+      F +SA    NVN +F  I  K+
Sbjct: 123 EGGERKVARE-EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.3 bits (155), Expect = 4e-13
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 14/188 (7%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           LK+ +LGD  +GKTS + +YV  +   +     G + + K +MV    +   IWD  G  
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY----SEARKWNQTAIP-ILIGTKFD 213
           R         + A   + +FD+T+  T  ++  W      +A   +    P +++G K D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFNLPWTVKR 272
                    +     +A+A+  +     +F +SA   INV + F+ I          V+ 
Sbjct: 123 LEN------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176

Query: 273 NLTIGEPI 280
                EPI
Sbjct: 177 YNEFPEPI 184

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 6e-13
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 98  LVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +   K+ LLG+  +GK+S V ++V  +  E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
           G  R     P+  + A A + ++D+T+  +      W  E ++     I I +     D 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                + +     +A++YA         +SA  ++NVN+IF  I  KL
Sbjct: 124 ----ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   I   +WD  G  R
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRL 218
               +P   +D+ A + ++D+T+  +      W  + R    + + I L+G K D     
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL---- 117

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             D +     +    AK +      +SA    NV ++F+ + A L
Sbjct: 118 -ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 4e-12
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 10/178 (5%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT  +  Y  N+          +    T+M+ G      ++D  G  
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDF-- 215
                 P++       L  F + S  +  ++   +      +    P  L+GT+ D    
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 216 -----VRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFNLP 267
                       +      A   A+ +KA  +   SA     +  +F   +      P
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 7e-12
 Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           ++I ++G    GKT+ + K    E   +       +      V+   I+F++WDVGG  +
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219
                    ++   ++F+ D   R  +N            ++    +L+       +   
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
            +             +     +  + AT    + +   ++  +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 7e-12
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 8/167 (4%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           + K+ ++G   +GK++   +++ +           +   K   V G      I D  G  
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 65

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFV 216
                     +     L +F +  R + N +   +++  +         +L+G K D   
Sbjct: 66  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD--- 122

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
            L    Q    ++A A+  +     F +SA   +NV++ F+ ++  +
Sbjct: 123 -LESQRQVPR-SEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 8e-12
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 19/177 (10%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMV----------QGARIA 148
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++           +  ++ 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-- 206
             +WD  G  R         +DA+  L MFDLTS+ +  ++  W S+ +       P   
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           LIG K D   +     +     QAR  A       F +SA    NV K  + ++  +
Sbjct: 126 LIGNKADLPDQ-----REVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 8/165 (4%)

Query: 102 KISLLGDCQIGKTSFVK-YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           ++ ++G   +GK++    ++ +           +   K  ++        I D  G    
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKFDDFVRL 218
                   +     L +F +T R +   I  +  +  +         ILIG K D     
Sbjct: 67  GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL---- 122

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
               +     + +  A+ +K T   +SA   +NV++ F  ++  +
Sbjct: 123 -DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 10/177 (5%)

Query: 99  VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           + LK  ++GD  +GKT  +  Y  +           +    ++ V G +    ++D  G 
Sbjct: 8   LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 67

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFD--- 213
                  P++       L  F + +  +  ++   +    K     +P +LIGT+ D   
Sbjct: 68  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 127

Query: 214 ---DFVRLPPDLQWTIAT-QARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFN 265
                 RL    +  I   Q +  AK + A  +   SA     +  +F   +  +  
Sbjct: 128 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 3e-11
 Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 7/167 (4%)

Query: 99  VSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V++K+ ++G+  +GK+S + +Y      +   +  G++ + + + V    +   +WD  G
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
                       + A A + +F  T R +  +I  W  +           L+  K D   
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID--- 117

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
               D       +A   AK +K   + +S   ++NV+++FK++  K 
Sbjct: 118 --LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 5/164 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           ++I +LG    GKT+ + K    +   ++   G N+      V    + F++WDVGG  +
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 68

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219
                         ++F+ D   R  ++             +    I++       +   
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 128

Query: 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
                          +     +  S AT    + +   ++ +  
Sbjct: 129 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 7/164 (4%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           K+ ++G   +GK++   + + N           +   K +++ G      I D  G    
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRLP 219
                   +     L +F + +  +   I  +  + ++  +   +P+++     D     
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124

Query: 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
            + +       +  A++       +SA     V   F  ++ ++
Sbjct: 125 VESRQA-----QDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (139), Expect = 4e-11
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           LK+ LLGD  +GK+S + ++V +          G + + KT+  Q     F IWD  G  
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
           R     P+  + + A + ++D+T   T +++  W  E R+    +I + I     D    
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL--- 121

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             D++  +   A+ YA ++ A    +SA + IN+N++F  I  ++
Sbjct: 122 -TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 10/178 (5%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           ++K  ++GD  +GKT  +  Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPIL-IGTKFDDF-- 215
                 P++       L  F L S  +  ++   +    + +    PI+ +GTK D    
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 216 -----VRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFNLP 267
                      L      Q  A AK + A  +   SA     +  +F   +  +   P
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 1e-10
 Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 7/170 (4%)

Query: 97  DLVSLKISLLGDCQIGKTSFVK-YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
           +L + K+ ++GD  +GK++    +              +   K   +        + D  
Sbjct: 1   NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTA 60

Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS-EARKWNQTAIPILIGTKFDD 214
           G            +     L ++ +T + +   +  ++    R  ++ + P+++     D
Sbjct: 61  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 120

Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNINVNKIFKFIMAKL 263
                  L+     Q +  A         +SA    +NV+K F  ++  +
Sbjct: 121 ----LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-10
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            K+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +   IWD  G  
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIPILIGTKFDD 214
           R         + +   L  F +    +  ++  W  E    A      + P +I     D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 263
                   +     +A+A+ +      +F +SA    NV   F+  + ++
Sbjct: 127 ISE-----RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           K+ ++G   +GK++   +++ +E     +    +   K +++ G  +   I D  G    
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR--KWNQTAIPILIGTKFDDFVRL 218
                   +     L +F +T   +  +   +  +    K ++    +L+G K D     
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD----- 120

Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             D +     +A+  A         +SA    NV+K+F  +M ++
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 11/178 (6%)

Query: 99  VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 60

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
               +  P++  D+ A+L  FD++   TL+S++  +    +       + L+G K D   
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 217 RLPPDLQWT-------IATQARAYAKAMKATLFF-SSATHNIN-VNKIFKFIMAKLFN 265
            +   ++ +          Q    AK + A  +   SA  + N V  IF        N
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 54.6 bits (130), Expect = 9e-10
 Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 9/166 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           L+I +LG    GKT+ + +    E   +    G N+      +    +  ++WD+GG + 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 73

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA--IPILIGTKFDDFVR 217
              +      D  A++F+ D T +  +++         +  +      ++   K D    
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           L                K    ++  SSA     + +   +++  +
Sbjct: 134 LSASEVSK--ELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 5/164 (3%)

Query: 102 KISLLGDCQIGKTSFVK-YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           K+ +LG   +GK++    +V             +   K + V   +    I D  G  + 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS-EARKWNQTAIPILIGTKFDDFVRLP 219
                +  K+      ++ +T++ T N +        R  +   +P+++     D     
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124

Query: 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
              +      AR +          SSA   INVN+IF  ++ ++
Sbjct: 125 VVGKEQGQNLARQW---CNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 5/164 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
            K+ ++G    GKT+ + ++  NE   +    G N+    +        F +WD+GG   
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 71

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219
                     +   ++ + D T R  ++       +           L+       V+  
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131

Query: 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
             +            K  +  +    A     + +  +++M++L
Sbjct: 132 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           ++++ G   +GK+S V ++V      S      +   + +    +     I D  G  + 
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP---ILIGTKFDDFVR 217
                ++     A + ++ +TSR +L  +   Y +  +          +L+G K D+   
Sbjct: 64  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 123

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
                +   +++A A A+  K     +SA  N NV ++F+ +
Sbjct: 124 -----REVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 160

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 8e-09
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 12/186 (6%)

Query: 80  GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINK 138
           GL+ + R   S  D +     ++I LLG    GKT+ + +    +        G      
Sbjct: 1   GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FN 51

Query: 139 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 198
              VQ      ++WD+GG  +   +     ++   ++++ D   R          +E  +
Sbjct: 52  IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLE 111

Query: 199 WNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
             + + +P+LI     D +                  +     +   SA     V     
Sbjct: 112 EEKLSCVPVLIFANKQDLLT-AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170

Query: 258 FIMAKL 263
           ++   +
Sbjct: 171 WVCKNV 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 8/166 (4%)

Query: 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
           S KI++LG   +GK+S   ++V  +   S      N   K + V G      + D  G  
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 159 RSFDHVPIACKDAVAILFMFDLT--SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
                      D    + ++ +T      +  ++               +L+G K D   
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD--- 120

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
                 +     + +A A++  A    SSA  N     +F+ I+ +
Sbjct: 121 --LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 9/171 (5%)

Query: 99  VSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
           V  K+ L+GD   GKT+FV +++  E +++ +   G+ +           I F++WD  G
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61

Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
             +           A   + MFD+TSR T  ++  W+ +  +  +    +L G K D   
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI-- 119

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
                    +  ++  + +      +  SA  N N  K F ++  KL   P
Sbjct: 120 -----KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 10/171 (5%)

Query: 99  VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           +  K+ ++GD   GKT  +     ++                + V G ++  ++WD  G 
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL 60

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA-RKWNQTAIPILIGTKFDDF- 215
                  P++  D   IL  F + S  +L +I   ++   + +      IL+G K D   
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 216 ------VRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFI 259
                        +     + R  A  + A  +   SA     V ++F+  
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 5/166 (3%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           ++I +LG    GKT+ + +    E   ++   G         V    + F +WD+GG + 
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLTS 61

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219
              +      +  A++++ D   R  +           +  +    IL+       +   
Sbjct: 62  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121

Query: 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
                   +      K  K  +F +SAT    +++  ++++  L +
Sbjct: 122 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.5 bits (119), Expect = 3e-08
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 11/172 (6%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
           LK+ +LGD  +GKTS + +YV ++  Q+    +    L  +  +         +WD  G 
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-----NQTAIPILIGTKF 212
            R         + A   + ++D+T+  +  +I  W  E          +T   +++G K 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
           D         + +    A++        LF +SA + INV+  F+ I     
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIP---LFLTSAKNAINVDTAFEEIARSAL 171

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 5e-08
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 5/167 (2%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           L++ +LGD + GK+S +        + L+        K ++V G      I +       
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA--GAP 63

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220
                      + +  + D  S   ++ + G  S  R   +  + + +    D      P
Sbjct: 64  DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123

Query: 221 DLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKLFNL 266
            +      +ARA    MK   ++ + AT+ +NV+++F+ +  K+  L
Sbjct: 124 RVVGD--ARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 168

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 11/166 (6%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
            KI ++GD  +GKT    ++      +R+    G++   + + + G RI   +WD  G  
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 159 RSFD-HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFV 216
           R     V    ++  A++F++D+T+  + +S+  W  E ++      IP ++     D  
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD-- 120

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSA---THNINVNKIFKFI 259
                        A+ +A      LF +SA     N +V  IF  +
Sbjct: 121 --LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 10/165 (6%)

Query: 102 KISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161
           K+  LG    GKT+ +  + N++  +LQ         +  +    I F+ +D+GG  ++ 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQP---TWHPTSEELAIGNIKFTTFDLGGHIQAR 58

Query: 162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV----- 216
                   +   I+F+ D       +             +      +             
Sbjct: 59  RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 118

Query: 217 --RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
              L   L     T ++         +F  S        + F+++
Sbjct: 119 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 8/163 (4%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           ++++L+G    GKT+FV      +    +      +      +    +   +WD+GG  R
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIP---TVGFNMRKITKGNVTIKLWDIGGQPR 59

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE--ARKWNQTAIPILIGTKFDDFVR 217
                   C+   AI++M D   +  + +          +   Q    +++G K D    
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 260
           L             +  +  +   +  S     N++   ++++
Sbjct: 120 LDEKELIEK--MNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 23/166 (13%), Positives = 54/166 (32%), Gaps = 9/166 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           L++ +LG    GKT+ + K+ G + +         L      ++      +IWDVGG   
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLEHRGFKLNIWDVGGQKS 58

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA--IPILIGTKFDDFVR 217
              +     +    ++++ D   R  +              + A    ++   K D    
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           L  +            +   +  +   SA    ++     +++  +
Sbjct: 119 LSCNAIQEALELDSIRSHHWR--IQGCSAVTGEDLLPGIDWLLDDI 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 25/162 (15%), Positives = 61/162 (37%), Gaps = 3/162 (1%)

Query: 102 KISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161
           K+ LLG   +GK++  +  G  ++     A  +  +++++V G   +  ++D+       
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221
                      A + ++ +T + +         + R+  QT    +I             
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII---LVGNKSDLVR 119

Query: 222 LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
            +     + RA A         +SA  + NV  +F+ ++ ++
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 15/176 (8%)

Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           + K+  LG    GKT+ +  + +++          L   +  +  A + F+ +D+GG  +
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP---TLHPTSEELTIAGMTFTTFDLGGHIQ 69

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE--ARKWNQTAIPILIGTKFDDFVR 217
           +             I+F+ D      L             +       +++G K D    
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129

Query: 218 LPPD----------LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           +  +                + +     A    +F  S        + F+++   +
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 9/167 (5%)

Query: 102 KISLLGDCQIGKTSFVK---YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG-GD 157
           ++ L+G+  +GK++       V +  +   ++ G +   +TLMV G      + D+    
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFV 216
             +        +   A L ++ +T R +         + R+  QT  IPI++     D V
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124

Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
           R           + RA A         +SA    NV ++F+ I+ ++
Sbjct: 125 RCREVSVS----EGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 10/167 (5%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           +K+++ G   +GK++ V +++             +       +    ++  I D      
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDT-AGQE 61

Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVR 217
                    +     + ++D+T R +   ++   +   +    +    IL+G K D    
Sbjct: 62  DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD---- 117

Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSA-THNINVNKIFKFIMAKL 263
                +     +    A  +    +  SA T   N+ +IF  +  ++
Sbjct: 118 -LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 6/178 (3%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           LK+ LLG  + GK++F+K +       +   G+             + F + DVGG    
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGII----EYPFDLQSVIFRMVDVGGQRSE 58

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220
                   ++  +I+F+  L+    +       +   +       I+    F +   +  
Sbjct: 59  RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL- 117

Query: 221 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGE 278
                          +     F        +     +FI+    +L     + +    
Sbjct: 118 -FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF 174

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 21/172 (12%)

Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
           +K+ + G    GK+S +    G E      +AG         +    +   I D  G   
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 160 SFDH--------VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTK 211
           + D              + A  +LFM D T+   ++    W     +        ++  K
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
            D            I  +    ++     L   SA     V+ +   +   +
Sbjct: 122 AD------------ITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
           +KI LLG  + GK++F+K +     +     G++  +     +   + F + DVGG    
Sbjct: 3   VKILLLGAGESGKSTFLKQMRIIHGQDPTK-GIHEYD----FEIKNVPFKMVDVGGQRSE 57

Query: 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
                       +ILF+   +    +       +   +       I+    F +   +
Sbjct: 58  RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.89
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.87
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.85
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.82
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.82
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.81
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.8
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.79
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.78
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.76
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.75
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.7
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.7
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.68
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.68
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.67
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.61
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.58
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.56
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.52
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.51
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.36
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.36
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.31
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.29
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.18
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.17
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.1
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.09
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.99
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.89
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.86
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.71
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.68
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.66
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.5
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.21
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.06
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.85
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.69
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.59
d1okkd2	207	GTPase domain of the signal recognition particle r	97.54
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.5
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.43
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.41
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.33
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.18
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.89
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.85
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.74
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.57
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.44
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.28
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.13
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.07
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.07
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.0
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.96
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.96
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.93
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.9
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.77
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.75
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.6
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.57
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.52
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.51
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.42
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.35
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.34
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.31
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.17
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.14
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.95
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.93
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	94.88
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.83
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.77
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.74
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.74
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.73
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.67
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	94.67
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.65
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.57
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.55
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.54
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.51
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.49
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.39
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.39
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.37
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.3
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.21
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.2
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.19
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.18
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.07
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.05
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.01
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.96
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.89
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.73
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.69
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.63
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.45
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.42
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.35
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.25
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.17
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.11
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	92.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.8
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	92.76
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	92.76
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	92.67
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	92.6
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.54
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	92.53
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.46
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.26
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.22
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.11
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.1
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.95
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.94
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.91
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.7
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	91.64
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.54
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.5
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.38
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.37
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	91.27
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	91.13
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	91.02
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	91.01
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.94
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.88
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.8
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.44
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	90.34
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.24
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.12
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.72
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.47
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	89.47
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	89.41
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	89.4
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.3
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.14
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.08
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	88.67
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	88.55
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.54
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	88.38
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	88.25
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	88.2
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	87.7
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.57
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	87.22
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	87.07
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.95
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	86.67
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	86.35
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	85.04
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	84.92
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	84.85
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	84.6
d1xpua3	289	Transcription termination factor Rho, ATPase domai	84.23
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	84.06
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	83.91
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	83.89
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	83.83
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	83.79
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	83.74
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	83.27
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	83.23
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	83.07
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.73
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	82.43
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	81.84
d1tuea_	205	Replication protein E1 helicase domain {Human papi	81.81
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	81.65
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	81.48
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	81.31
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	81.31
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	80.66
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	80.48
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	80.18
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.09

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-36  Score=243.23  Aligned_cols=161  Identities=20%  Similarity=0.378  Sum_probs=148.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +|+++.|. .+.+|.+.++.......++..+.+.+||++|++++..+...+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            589999999999999999 99999988 5667889999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      ||+++++||+++..|++++.++.++.|+||||||+|+    . +.+.+..++++++++.++++|+|+||++|.||+++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl----~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~  156 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDL----L-DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK  156 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGG----G-GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCCceEEEeeccCCc----c-cceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHH
Confidence            9999999999999999999998888888999999996    1 2334557889999999999999999999999999999


Q ss_pred             HHHHHHhC
Q 023335          258 FIMAKLFN  265 (283)
Q Consensus       258 ~l~~~i~~  265 (283)
                      +|++.+++
T Consensus       157 ~l~~~~lq  164 (164)
T d1z2aa1         157 YLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-36  Score=242.08  Aligned_cols=164  Identities=16%  Similarity=0.231  Sum_probs=145.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ...+||+|+|++|||||||+ +|+++.|.+.+.++..+...+.+.+++..+.+.+||++|++++..++..+++++|++|+
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~   83 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL   83 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence            35799999999999999999 99999999666666677778889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++++||+.+..|+..+.+.  ..+.|.||||||+||     ...+....++++.+++.++++||+|||++|.||++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl-----~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e  158 (173)
T d2fn4a1          84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL-----ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE  158 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG-----GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeech-----hhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHH
Confidence            99999999999999999998765  334566899999996     22234457889999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|+.|++.+.+.
T Consensus       159 ~f~~l~~~i~k~  170 (173)
T d2fn4a1         159 AFEQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-36  Score=240.55  Aligned_cols=162  Identities=26%  Similarity=0.497  Sum_probs=139.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +|+++.|. .+.+|.+.++..+.+..++..+.+++||++|++.+..+++.+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            4689999999999999999 99999999 566688889998999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++++||+++..|++.+..... ..+++|||||+||    . ..+.+..+++++++++++++|+||||++|.||+++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl----~-~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~  156 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL----E-KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL  156 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG----G-GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeecccccc----c-cccccchHHHHHHHHHcCCeEEEEecCCCcCHHHH
Confidence            9999999999999999998877654 4455799999996    2 23445588999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023335          256 FKFIMAKLFN  265 (283)
Q Consensus       256 f~~l~~~i~~  265 (283)
                      |++|++.+++
T Consensus       157 F~~l~~~i~~  166 (167)
T d1z08a1         157 FLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-35  Score=238.25  Aligned_cols=163  Identities=15%  Similarity=0.200  Sum_probs=141.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      .+.+||+++|++|||||||+ +|+++.|.+.+ +|.+ +.+.+.+.+++..+.+++||++|++.+..+.+.+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC-EEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCccee-eccccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            34799999999999999999 99999988444 4554 445677889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhH-CC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc-CH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKW-NQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI-NV  252 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~-~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v  252 (283)
                      +|||+++++||+++..|+.++.+. .. +.|.||||||+||.     ..+.+..++++++++.++++|+|+||+++. ||
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~-----~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV  155 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-----HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV  155 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-----TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchh-----hhceeehhhHHHHHHHcCCEEEEEcCCCCCcCH
Confidence            999999999999999999998776 33 44557999999972     223455788999999999999999999886 99


Q ss_pred             HHHHHHHHHHHhCC
Q 023335          253 NKIFKFIMAKLFNL  266 (283)
Q Consensus       253 ~~lf~~l~~~i~~~  266 (283)
                      +++|..|++.+.++
T Consensus       156 ~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         156 DKTFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=238.57  Aligned_cols=160  Identities=19%  Similarity=0.243  Sum_probs=127.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+++|++|||||||+ ++.+..+....++.+ +.+.+.+.+++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            79999999999999999 999887765544444 4456788899999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          180 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      +++++||+++..|+.++.....  ..|.+|||||+||    . ..+.+..++++++++.++++|+||||++|.||+++|+
T Consensus        81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl----~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~  155 (168)
T d2gjsa1          81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL----V-RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE  155 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTC----G-GGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             ccccccccccccccchhhcccccccceEEEeecccch----h-hhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999999987753  3455799999996    2 2334558889999999999999999999999999999


Q ss_pred             HHHHHHhCC
Q 023335          258 FIMAKLFNL  266 (283)
Q Consensus       258 ~l~~~i~~~  266 (283)
                      .|++.+..+
T Consensus       156 ~l~~~i~~~  164 (168)
T d2gjsa1         156 GVVRQIRLR  164 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=244.57  Aligned_cols=162  Identities=25%  Similarity=0.371  Sum_probs=140.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +|+++.|. .+.+|.+.++..+.+..++..+.+.+||++|++.+..+++.+++++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            4789999999999999999 99999988 556788999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |||+++++||+++.+|+.++.+..++.|.+|||||+||.    ..  . ..+++..+++..+++|+|+||++|.||+++|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~----~~--~-~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  154 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK----DR--K-VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  154 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCS----CS--C-CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHH
T ss_pred             ccccccccccchhHHHHHHHhhccCCCceeeecchhhhh----hh--h-hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999887777779999999972    21  1 2234567888899999999999999999999


Q ss_pred             HHHHHHHhCCc
Q 023335          257 KFIMAKLFNLP  267 (283)
Q Consensus       257 ~~l~~~i~~~~  267 (283)
                      ++|++.+++.+
T Consensus       155 ~~l~~~l~~~~  165 (170)
T d1i2ma_         155 LWLARKLIGDP  165 (170)
T ss_dssp             HHHHHHHHTCT
T ss_pred             HHHHHHHccCC
Confidence            99999998754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=237.59  Aligned_cols=162  Identities=23%  Similarity=0.431  Sum_probs=146.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.|. .+.++++.++..+.+.+++..+.+.+|||+|++.|..+++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            4699999999999999999 99999998 666688899999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++..+|+.+..|+..+....... |+||||||+|+     .+...+..++++.+++.++++|++|||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~-----~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~  158 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL-----AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL  158 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG-----GGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             eeecccchhhhhhhhhhhhhcccccccccEEEEEeeccc-----ccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHH
Confidence            999999999999999999998876554 44799999996     223345578899999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 023335          256 FKFIMAKLFN  265 (283)
Q Consensus       256 f~~l~~~i~~  265 (283)
                      |.+|++.++.
T Consensus       159 f~~l~~~l~~  168 (171)
T d2ew1a1         159 FLDLACRLIS  168 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-35  Score=234.36  Aligned_cols=161  Identities=28%  Similarity=0.488  Sum_probs=145.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ++++||+|+|++|||||||+ +|++++|. .+.+|.+..+.......++....+.+||++|++.+..++..++++++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            57899999999999999999 99999998 55668888888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||++++++|+.+..|+..+.......+| +|||||+|+     .+.+.+..++++++++.++++|+||||++|.||++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl-----~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e  156 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL-----TDVREVMERDAKDYADSIHAIFVETSAKNAININE  156 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTC-----GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchh-----ccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHH
Confidence            999999999999999999998887665555 699999996     23344558899999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 023335          255 IFKFIMAKL  263 (283)
Q Consensus       255 lf~~l~~~i  263 (283)
                      +|.+|++.+
T Consensus       157 ~f~~l~~~i  165 (167)
T d1z0ja1         157 LFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999887

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-35  Score=234.86  Aligned_cols=161  Identities=24%  Similarity=0.397  Sum_probs=144.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +++++++. .+.++.+.++....+.+++..+.+++||++|++.+..++..+++++|++|+
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            3589999999999999999 99999998 555578888888999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++.+||+.+..|+..+.+.....+| +++|||+|+     ........++++.+++.++++|++|||++|.||+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl-----~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~  157 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-----EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA  157 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-----GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccc-----hhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999887665555 689999996     233344578899999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 023335          256 FKFIMAKLF  264 (283)
Q Consensus       256 f~~l~~~i~  264 (283)
                      |++|++.++
T Consensus       158 f~~i~~~i~  166 (166)
T d1z0fa1         158 FLEAAKKIY  166 (166)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=5.8e-35  Score=235.06  Aligned_cols=161  Identities=17%  Similarity=0.233  Sum_probs=138.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      +.+||+|+|++|||||||+ +|++++|. .+.+|.+.++ .+.+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            4689999999999999999 99999998 5556766654 5678899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++++||+.+..|++++.+..  ++.|.+|||||+||     ...+.+..++++++++.++++|+||||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl-----~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e  156 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-----EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG-----GGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccc-----cccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHH
Confidence            999999999999999999998763  34556799999996     22334558899999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|++|++.+..
T Consensus       157 ~f~~l~~~i~~  167 (168)
T d1u8za_         157 VFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            99999998864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.4e-35  Score=234.22  Aligned_cols=163  Identities=25%  Similarity=0.471  Sum_probs=145.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +++++.|. ...++.+.+...+.+..++..+.+++|||+|++++..+++.+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            3699999999999999999 99999988 556688888888999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++++++..+..|+..+.......++ ++||||+|+     .....+..++++.+++.++++|++|||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~-----~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  158 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-----EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT  158 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTC-----GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccc-----ccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            99999999999999999888877655555 689999996     222344578889999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |++|++.++++
T Consensus       159 f~~l~~~i~ek  169 (169)
T d3raba_         159 FERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhC
Confidence            99999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-35  Score=235.24  Aligned_cols=162  Identities=17%  Similarity=0.256  Sum_probs=142.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ++++||+++|++|||||||+ +|+++.|.+.+.++..++....+.+++..+.+.+||++|++.+..+...+++++|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            46899999999999999999 99999998555544446677888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++++||+++..|+.++....  ++.|++|||||+||    . ..+....++++.+++.++++|+||||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl----~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL----E-SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG----G-GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccch----h-hcccchHHHHHHHHHHcCCeEEEECCCCCcCHHH
Confidence            999999999999999999988764  34566799999996    2 2234457889999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023335          255 IFKFIMAKLF  264 (283)
Q Consensus       255 lf~~l~~~i~  264 (283)
                      +|+.|++.+.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=232.99  Aligned_cols=160  Identities=19%  Similarity=0.181  Sum_probs=141.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      +.+||+|+|++|||||||+ +|+++.|. .+.+|.+.++ .+.+.+++..+.+.+||++|++.+..+...+++++|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            5789999999999999999 99999988 5556777765 5778899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++++||+.+..|+.++.+..  .+.|++|||||+||    . ..+.+..+++++++++++++|+|+||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl----~-~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL----H-MERVISYEEGKALAESWNAAFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTC----G-GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeecccccc----c-cccchhHHHHHHHHHHcCCEEEEEecCCCCCHHH
Confidence            999999999999999999987763  34556799999996    1 2234558889999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023335          255 IFKFIMAKLF  264 (283)
Q Consensus       255 lf~~l~~~i~  264 (283)
                      +|+.|++.+.
T Consensus       157 ~f~~li~~~~  166 (167)
T d1xtqa1         157 VFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=236.25  Aligned_cols=169  Identities=17%  Similarity=0.259  Sum_probs=143.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335           96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  173 (283)
Q Consensus        96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  173 (283)
                      +....+||+|+|++|||||||+ +|+++.|.+ +.+|++ +...+.+.+++..+.+.+||++|++.|..++..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            3556899999999999999999 999999984 445655 5667788889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCC-------CCCcccchHHHHHHHHHHcC-CcEEEE
Q 023335          174 ILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRL-------PPDLQWTIATQARAYAKAMK-ATLFFS  244 (283)
Q Consensus       174 iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l-------~~~~~~~~~~~~~~~~~~~~-~~~~e~  244 (283)
                      +++|||+++++||+++. .|+..++...++.|.++||||+||....       ....+.+..+++++++++++ +.|+||
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999875 6677777777777779999999973210       01123445788999999998 689999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhC
Q 023335          245 SATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ||++|.||+++|+.+++.+++
T Consensus       164 SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-35  Score=233.26  Aligned_cols=160  Identities=23%  Similarity=0.442  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      +||+|+|++|||||||+ +|+++++. .+.++.+.+........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999 99999988 55668888888888888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK  257 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  257 (283)
                      |+++++||+++..|+.++...... .|.+|||||+|+.     +.+....+++.++++.++++|+||||++|.||+++|+
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~  155 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-----DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  155 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchh-----hhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            999999999999999998877544 4447999999962     2334457899999999999999999999999999999


Q ss_pred             HHHHHHhC
Q 023335          258 FIMAKLFN  265 (283)
Q Consensus       258 ~l~~~i~~  265 (283)
                      +|++.|..
T Consensus       156 ~i~~~l~g  163 (164)
T d1yzqa1         156 RVAAALPG  163 (164)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHhhCC
Confidence            99998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=232.46  Aligned_cols=161  Identities=20%  Similarity=0.267  Sum_probs=139.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ++++||+++|++|||||||+ +|+.+.|.+. .+|.+.. ....+.+++..+.+.+||++|++.+..+++.+++++|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE-EEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-cceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            46899999999999999999 9999999954 4566654 4567788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhH-C-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINV  252 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~-~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v  252 (283)
                      +|||+++++||+++..|+..+.+. . ++.|.||||||+|+     ........+++..+++++ +++|+||||++|.||
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl-----~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv  154 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-----EDERVVGKEQGQNLARQWCNCAFLESSAKSKINV  154 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC-----GGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCc-----ccccccchhHHHHHHHHhCCCEEEEEcCCCCcCH
Confidence            999999999999999999998775 2 34566899999996     223344578888898875 789999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023335          253 NKIFKFIMAKLF  264 (283)
Q Consensus       253 ~~lf~~l~~~i~  264 (283)
                      +++|++|++.+.
T Consensus       155 ~e~F~~l~~~i~  166 (167)
T d1c1ya_         155 NEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-35  Score=234.65  Aligned_cols=161  Identities=18%  Similarity=0.277  Sum_probs=139.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+++|++|||||||+ +|+++.|. .+.+|.+.. ......+++..+.+.+||++|++.+......+++++|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec-cccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            689999999999999999 99999988 445566654 455677899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH---CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW---NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~---~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ||+++++||+++..|+..+.+.   ..+.|.+|||||+|+     ...+.+..++++++++.++++|+||||++|.||++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl-----~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e  155 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE-----SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKE  155 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG-----GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccc-----cccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHH
Confidence            9999999999999999888764   234566899999996     22334557889999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|+.|++.+.++
T Consensus       156 ~f~~l~~~~~~~  167 (171)
T d2erxa1         156 LFQELLNLEKRR  167 (171)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHh
Confidence            999999876544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=231.79  Aligned_cols=161  Identities=16%  Similarity=0.231  Sum_probs=137.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      .+||+|+|++|||||||+ +++++.|...+.++..+...+.+.+++..+.+.+||++|++.+......+++++|++++||
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   84 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVF   84 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEee
Confidence            589999999999999999 9999998854443444667788899999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          179 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       179 D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      |+++++||+.+..|+.++.+.  ....|.||||||+|+     ...+.+..++++++++.++++|+||||++|.||+++|
T Consensus        85 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl-----~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f  159 (171)
T d2erya1          85 SVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL-----DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF  159 (171)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTC-----TTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             ccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccch-----hhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHH
Confidence            999999999999999887765  334556899999996     2234455788999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 023335          257 KFIMAKLFN  265 (283)
Q Consensus       257 ~~l~~~i~~  265 (283)
                      ++|++.+.+
T Consensus       160 ~~l~~~i~k  168 (171)
T d2erya1         160 HELVRVIRK  168 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-34  Score=233.28  Aligned_cols=171  Identities=18%  Similarity=0.264  Sum_probs=143.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      +..+||+++|++|||||||+ +|+++.|. .+.+|.+ +.......+++..+.+++||++|+++|..++..+++++|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            35799999999999999999 99999998 4445666 455677778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHH-HHHHHHhHCCCCceEEEeecCCCCCCC-------CCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023335          176 FMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRL-------PPDLQWTIATQARAYAKAMK-ATLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~ilvgnK~DL~~~l-------~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa  246 (283)
                      +|||+++++||+++.. |...+....++.|.++||||+||....       ......+..+++++++++++ +.|+||||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            9999999999999975 666666667677778999999973110       01122355888999999974 79999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCccc
Q 023335          247 THNINVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i~~~~~~  269 (283)
                      ++|.||+++|+.+++.+++.+..
T Consensus       160 k~~~~V~e~f~~l~~~~~~~~~~  182 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEPPEP  182 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSCCST
T ss_pred             CCCcCHHHHHHHHHHHHhcCcCC
Confidence            99999999999999999887643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-34  Score=231.27  Aligned_cols=164  Identities=25%  Similarity=0.402  Sum_probs=144.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+++|++|||||||+ +|++++|. .+.+|.+.++..+.+..++..+.+.+||++|++.+..+++.+++++|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            3689999999999999999 99999998 556688999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++++||+++..|+.++....... +.++|+||+|+...  ...+.+..++++++++.++++|+|+||++|.||+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~--~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~  159 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE--GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS--SCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccc--cchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            999999999999999998887775554 44799999997321  112345588899999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 023335          256 FKFIMAKLF  264 (283)
Q Consensus       256 f~~l~~~i~  264 (283)
                      |..|++.|.
T Consensus       160 F~~i~~~i~  168 (170)
T d1ek0a_         160 FLGIGEKIP  168 (170)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHHHhc
Confidence            999987653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-34  Score=231.01  Aligned_cols=165  Identities=20%  Similarity=0.269  Sum_probs=139.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +.||+|+|++|||||||+ +|+++.|.+.+ +|.+ +...+...+++..+.+++||++|++.|..+++.+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            689999999999999999 99999998544 4554 55667788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHH-HHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335          178 FDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATH  248 (283)
Q Consensus       178 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~  248 (283)
                      ||+++++||+++.. |...+..+.++.|.+|||||+|+...-.       .....+..++++.++++++. +|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999875 5666676777777789999999732100       01123447889999999985 899999999


Q ss_pred             CcCHHHHHHHHHHHHhC
Q 023335          249 NINVNKIFKFIMAKLFN  265 (283)
Q Consensus       249 ~~~v~~lf~~l~~~i~~  265 (283)
                      |.||+++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-34  Score=230.52  Aligned_cols=163  Identities=25%  Similarity=0.435  Sum_probs=145.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +|++++|. ...+|.+.++.......++..+.+.+||++|++.+..++..+++++|+++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            45799999999999999999 99999988 55668888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++.++|+++..|+..+.+... +.|.+|||||+|+     ...+.+..++++++++.++++|+|+||++|.||++
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl-----~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e  158 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-----ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG-----GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccc-----cccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHH
Confidence            99999999999999999999877654 4455799999996     23344558889999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 023335          255 IFKFIMAKLFN  265 (283)
Q Consensus       255 lf~~l~~~i~~  265 (283)
                      +|+.|++.+.+
T Consensus       159 ~f~~l~~~i~~  169 (170)
T d1r2qa_         159 IFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHTSCC
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-34  Score=228.62  Aligned_cols=161  Identities=15%  Similarity=0.230  Sum_probs=141.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ++++||+|+|++|||||||+ +|+++.|.+. .++.+.++ ...+..++..+.+.+||++|++.+...+..+++.+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceee-ccceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            35799999999999999999 9999999854 55666655 455677889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      +|||++++.||+.+..|+..+.+..  ++.|.++||||+|+      ..+.+..++++++++.++++|++|||++|+||+
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~  153 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL------AARTVESRQAQDLARSYGIPYIETSAKTRQGVE  153 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTC------SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccc------ccccccHHHHHHHHHHhCCeEEEEcCCCCcCHH
Confidence            9999999999999999999998763  34566899999996      223455788999999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023335          254 KIFKFIMAKLFN  265 (283)
Q Consensus       254 ~lf~~l~~~i~~  265 (283)
                      ++|++|++.+.+
T Consensus       154 e~f~~i~~~i~~  165 (166)
T d1ctqa_         154 DAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=230.49  Aligned_cols=169  Identities=22%  Similarity=0.342  Sum_probs=142.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ++.+||+|+|++|||||||+ +|+++.|.+. .+|.+ +...+.+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            45899999999999999999 9999999844 44555 556677888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHH-HHHHHHhHCCCCceEEEeecCCCCCCC-------CCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023335          176 FMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRL-------PPDLQWTIATQARAYAKAMK-ATLFFSSA  246 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~ilvgnK~DL~~~l-------~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa  246 (283)
                      +|||+++++||+++.. |+..++.+..+.|+||||||+||...-       ..........++..++++++ +.|+||||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999975 777777777777778999999962110       00111233668888999887 68999999


Q ss_pred             CCCcCHHHHHHHHHHHHhCCc
Q 023335          247 THNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       247 ~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      ++|.||+++|+.|++.+++.|
T Consensus       162 k~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999998754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-34  Score=229.53  Aligned_cols=163  Identities=21%  Similarity=0.378  Sum_probs=141.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +++++++. .+.++.+...........+..+.+.+||++|++.+..+++.+++++|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            3589999999999999999 99999988 555577777777888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++++||+.+..|+..+.++....+| +|||||+|+     ...+....+++..+++.++++|+|+||++|.||+++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~-----~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-----ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA  156 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-----GGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCch-----hhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            99999999999999999999887655444 799999996     223344578899999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |.+|++.++++
T Consensus       157 f~~i~~~i~~~  167 (173)
T d2a5ja1         157 FINTAKEIYRK  167 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-34  Score=228.78  Aligned_cols=160  Identities=14%  Similarity=0.235  Sum_probs=136.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ++||+++|++|||||||+ +|+++.|. .+.||.+.++. ..+..++..+.+++||++|++.+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            589999999999999999 99999998 55567787764 455678999999999999998874 566789999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc-CHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI-NVNK  254 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~  254 (283)
                      ||+++++||+.+..|+..+...  .++.|.++||||+||     ...+.+..+++++++++++++|||+||++|. ||++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl-----~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e  154 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL-----DHSRQVSTEEGEKLATELACAFYECSACTGEGNITE  154 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG-----GGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhh-----hhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHH
Confidence            9999999999999887766554  335566899999996     2234456889999999999999999999998 5999


Q ss_pred             HHHHHHHHHhCC
Q 023335          255 IFKFIMAKLFNL  266 (283)
Q Consensus       255 lf~~l~~~i~~~  266 (283)
                      +|..|++.+.++
T Consensus       155 ~F~~l~~~i~~~  166 (168)
T d2atva1         155 IFYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-33  Score=225.16  Aligned_cols=161  Identities=25%  Similarity=0.476  Sum_probs=134.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ..+||+|+|++|||||||+ ++++++|. ..++ +++.++....+..++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            4789999999999999999 99999986 4434 6688888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      +|||+++++||..+..|+..+...... .++++|+||+|+     .....+..+++..+++.++++|+++||++|.||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~-----~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e  159 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS-----AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCST-----TSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeech-----hhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            999999999999999998888776554 455799999996     22334557889999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 023335          255 IFKFIMAKLF  264 (283)
Q Consensus       255 lf~~l~~~i~  264 (283)
                      +|++|++.+.
T Consensus       160 ~f~~l~~~i~  169 (170)
T d2g6ba1         160 AFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHcC
Confidence            9999999875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-33  Score=230.52  Aligned_cols=165  Identities=21%  Similarity=0.385  Sum_probs=147.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +++++.+. .+.+|.+..+....+.+++..+.+.+|||+|+++|..++..++++++++|+
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            4699999999999999999 99999988 566788888888899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||++++++|..+..|+..+.+..... |++|||||+|+.     +......++...+++..++.|+++||++|.||+++
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-----DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA  159 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccc-----cccchhHHHHhhhhhccCcceEEEecCcCccHHHH
Confidence            999999999999999999888765544 447999999962     23445578889999999999999999999999999


Q ss_pred             HHHHHHHHhCCcc
Q 023335          256 FKFIMAKLFNLPW  268 (283)
Q Consensus       256 f~~l~~~i~~~~~  268 (283)
                      |++|++.+.+...
T Consensus       160 f~~l~~~i~~~~~  172 (194)
T d2bcgy1         160 FLTMARQIKESMS  172 (194)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999876553

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=228.31  Aligned_cols=163  Identities=24%  Similarity=0.373  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ ++++++|. .+.++.+.......+..++..+.+.+||++|++++..+++.+++++|++|+
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            3589999999999999999 99999988 556688888888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||.+++++|.++..|+..+....... |+++||||+|+     ........+.+.++++.++++|+++||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~-----~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~  158 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL-----DADREVTFLEASRFAQENELMFLETSALTGENVEEA  158 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG-----GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEecccchhHHHHhhhhcccccccCCceEEEEEEecccc-----cchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            999999999999999999998876544 45799999996     223444577888999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |+++++.++++
T Consensus       159 f~~l~~~i~~~  169 (174)
T d2bmea1         159 FVQCARKILNK  169 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-33  Score=225.97  Aligned_cols=161  Identities=25%  Similarity=0.459  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      -+||+++|++|||||||+ +++++++. .+.+|.+.++..+.+.+++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            489999999999999999 99999988 5667999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ||+++++||+++..|+..+........+ ++++||.|+      .......++++++++.++++|++|||++|+||+++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f  155 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  155 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC------TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhh------hhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHH
Confidence            9999999999999999888888665555 789999995      234455788999999999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 023335          257 KFIMAKLFNL  266 (283)
Q Consensus       257 ~~l~~~i~~~  266 (283)
                      ++|++.+.++
T Consensus       156 ~~l~~~i~~k  165 (166)
T d1g16a_         156 FTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999988654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=227.18  Aligned_cols=163  Identities=26%  Similarity=0.486  Sum_probs=142.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +++++.+. .+.++.+.+.....+.+++..+.+.+||++|++.|..++..+++++|++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            4689999999999999999 99999988 556677888888889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||+++++||+.+..|+..+.++....+| +|||||+|+.     +.+....+....+.+.++.+|+++||++|.||+++
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~  157 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-----HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA  157 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccc-----ccccchHHHHHHhhcccCceEEEEecCCCcCHHHH
Confidence            99999999999999999999988655545 7999999962     22334466778888899999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |+++++.+.+.
T Consensus       158 f~~l~~~i~~~  168 (175)
T d2f9la1         158 FKNILTEIYRI  168 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-33  Score=228.70  Aligned_cols=163  Identities=21%  Similarity=0.388  Sum_probs=117.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      ..+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+.+|||+|++.|..+++.+++++|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            4589999999999999999 99999988 556688889999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      |||++++.||+.+..|+..+..... +.|+++||||.|+.     ..+....+++..+++..+++|++|||++|+||+++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-----DKRQVSKERGEKLALDYGIKFMETSAKANINVENA  159 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-----SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccch-----hhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999976654 45557999999962     22334467788999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |++|++.+..+
T Consensus       160 f~~l~~~i~~k  170 (173)
T d2fu5c1         160 FFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-33  Score=225.81  Aligned_cols=165  Identities=22%  Similarity=0.433  Sum_probs=147.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  175 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii  175 (283)
                      ...+||+|+|++|||||||+ +++++++. ...++.+..+..+.+.+++..+.+.+|||+|++++..+++.+++++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45799999999999999999 99999998 55567788888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          176 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       176 lv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      +|||++++++++.+..|+.++.+...  ..++++++||.|+      ..+.+..++++++++.++++|+++||++|+||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~------~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK------ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQ  158 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS------SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeecccc------ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHH
Confidence            99999999999999999999987643  3444699999995      234456888999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcc
Q 023335          254 KIFKFIMAKLFNLPW  268 (283)
Q Consensus       254 ~lf~~l~~~i~~~~~  268 (283)
                      ++|+++++.+++.|.
T Consensus       159 e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         159 CAFEELVEKIIQTPG  173 (177)
T ss_dssp             HHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHccCcc
Confidence            999999999998874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=227.60  Aligned_cols=161  Identities=19%  Similarity=0.271  Sum_probs=135.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCC---CCCcccchhhhcccCc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG---DSRSFDHVPIACKDAV  172 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G---~~~~~~~~~~~~~~ad  172 (283)
                      ..+||+++|++|||||||+ +|++..+.  ...+|++.++..+.+.+++..+.+.+||+++   +++|  +...+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3689999999999999999 99988765  4556888999999999999999999999764   5544  5677899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335          173 AILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      ++|+|||+++++||+++..|+.++....  ++.|.+|||||+||    . ..+.+..++++++++.++++|+|+||++|.
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl----~-~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~  154 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL----V-RCREVSVSEGRACAVVFDCKFIETSAAVQH  154 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC----G-GGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccc----c-ccccccHHHHHHHHHHcCCeEEEEeCCCCc
Confidence            9999999999999999999999987652  45566899999996    2 233455788999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 023335          251 NVNKIFKFIMAKLFNL  266 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~  266 (283)
                      ||+++|+.|++.+..+
T Consensus       155 ~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         155 NVKELFEGIVRQVRLR  170 (172)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHc
Confidence            9999999999988543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.9e-33  Score=227.35  Aligned_cols=175  Identities=25%  Similarity=0.382  Sum_probs=151.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      -+||+|+|++|||||||+ ++++++|. .+.+|.+.++..+.+...+..+.+.+||++|++.+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            489999999999999999 99999988 5566889999889999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcC
Q 023335          178 FDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSATHNIN  251 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~  251 (283)
                      ||.++..+|+.+..|++++....     .+.|.+|||||+||      ....+..++..+++.. .+++|++|||++|.|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~g  155 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL------ENRQVATKRAQAWCYSKNNIPYFETSAKEAIN  155 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTS------SCCCSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecc------cccchhHHHHHHHHHHhcCCeEEEEcCCCCcC
Confidence            99999999999999999987762     23455899999996      2234556666667654 578999999999999


Q ss_pred             HHHHHHHHHHHHhCCccccccccCCCCCC
Q 023335          252 VNKIFKFIMAKLFNLPWTVKRNLTIGEPI  280 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~~~~~~~~~~~~~i  280 (283)
                      |+++|++|++.++++....+.....++||
T Consensus       156 I~e~f~~l~~~i~~~~~~~~~~~~~~~~~  184 (184)
T d1vg8a_         156 VEQAFQTIARNALKQETEVELYNEFPEPI  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHhccccccccCCCCCCC
Confidence            99999999999999887777666777775

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.9e-33  Score=224.51  Aligned_cols=167  Identities=25%  Similarity=0.337  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  178 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~  178 (283)
                      ++||+++|++|||||||+ +|+++.|.+.+.++..+...+.+.+++..+.+++||++|++.+..+++.+++++|++|+||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            689999999999999999 9999999854443434556677888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335          179 DLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHN  249 (283)
Q Consensus       179 D~~~~~s~~~~~~-~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~  249 (283)
                      |+++++||+.+.. |...+....++.|.+|||||+|+.....       .....+..+++..++++++. .|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            9999999999875 5555666677777789999999621100       01223458889999999875 7999999999


Q ss_pred             cC-HHHHHHHHHHHHhCC
Q 023335          250 IN-VNKIFKFIMAKLFNL  266 (283)
Q Consensus       250 ~~-v~~lf~~l~~~i~~~  266 (283)
                      .| |+++|+.+++.++++
T Consensus       162 ~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         162 ENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            85 999999999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=230.08  Aligned_cols=163  Identities=27%  Similarity=0.441  Sum_probs=140.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC----------eEEEEEEEeCCCCCCcccchhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG----------ARIAFSIWDVGGDSRSFDHVPI  166 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~----------~~~~l~i~Dt~G~~~~~~~~~~  166 (283)
                      ..+||+|+|++|||||||+ +|+++.|. .+.++.+.++..+.+.+++          ..+.+.+|||+|+++|..+++.
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            4689999999999999999 99999988 5555777777777766543          3578999999999999999999


Q ss_pred             hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC-CC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS  244 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  244 (283)
                      +++++|++|+|||++++++|+.+..|+.++..+. .. .|++|||||+||     ...+.+..+++.+++++++++|+++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl-----~~~~~v~~~e~~~~~~~~~~~~~e~  158 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL-----PDQREVNERQARELADKYGIPYFET  158 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC-----GGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccc-----hhhhcchHHHHHHHHHHcCCEEEEE
Confidence            9999999999999999999999999998877653 23 344699999996     2334456888999999999999999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCC
Q 023335          245 SATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      ||++|.||+++|++|++.+.++
T Consensus       159 Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         159 SAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-32  Score=218.93  Aligned_cols=161  Identities=23%  Similarity=0.403  Sum_probs=140.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .-+||+|+|++|||||||+ +++++.|. .+.+|++.....+....++..+.+.+||++|+..+......++..++++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            4689999999999999999 99999998 555588888888888999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCc
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNI  250 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~  250 (283)
                      +||++++.||+.+..|++++..+.     ...|++|||||+||      ..+.+..+++++++++++ ++|+||||++|.
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl------~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~  158 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI------SERQVSTEEAQAWCRDNGDYPYFETSAKDAT  158 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC------SSCSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccch------hhccCcHHHHHHHHHHcCCCeEEEEcCCCCc
Confidence            999999999999999999987652     23455799999996      234556889999999875 799999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 023335          251 NVNKIFKFIMAKLFN  265 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~  265 (283)
                      ||+++|++|++.++.
T Consensus       159 gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         159 NVAAAFEEAVRRVLA  173 (174)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999998864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-32  Score=221.91  Aligned_cols=163  Identities=25%  Similarity=0.416  Sum_probs=125.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      -+||+++|++|||||||+ +|+++++. .+.++.+........... ...+.+.+||++|++.+..++..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            489999999999999999 99999988 445577666655555443 445778999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCc
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNI  250 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~  250 (283)
                      |||++++.||+.+..|++++..+.     .+.|++|||||+|+    .+..+.+..++++++++.++ ++|++|||++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl----~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~  157 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA----EESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  157 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS----CGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccch----hhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence            999999999999999999987652     24456899999996    33333355788999999986 789999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 023335          251 NVNKIFKFIMAKLFNL  266 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~  266 (283)
                      ||+++|++|++.++++
T Consensus       158 gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         158 NVDTAFEEIARSALQQ  173 (175)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999988754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-32  Score=220.01  Aligned_cols=161  Identities=19%  Similarity=0.313  Sum_probs=133.5

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .+.+||+++|++|||||||+ +|++++|....++.+.. +.+.+.+++..+.+.+|||+|++.+     .|++.+|++|+
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEE-EEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCcccee-EEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            45899999999999999999 99999998666665554 4678889999999999999998764     47899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC---CCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcC
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN---QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSATHNIN  251 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~---~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~  251 (283)
                      |||+++++||+++..|++++....   ...+| ++||||.|+.   ....+.+..++++.++.+ ++++|+||||++|.|
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d---~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~  153 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS---ASSPRVVGDARARALCADMKRCSYYETCATYGLN  153 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC---SSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBT
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc---hhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcC
Confidence            999999999999999999987663   23344 6999999951   122233447788888765 578999999999999


Q ss_pred             HHHHHHHHHHHHhCCc
Q 023335          252 VNKIFKFIMAKLFNLP  267 (283)
Q Consensus       252 v~~lf~~l~~~i~~~~  267 (283)
                      |+++|..+++.++...
T Consensus       154 v~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         154 VDRVFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-32  Score=217.45  Aligned_cols=156  Identities=25%  Similarity=0.455  Sum_probs=134.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc-chhhhcccCcEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF  176 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~iil  176 (283)
                      .+||+++|++|||||||+ +|+++++. ...++.+..+..+...+.+....+.+||++|.+.+.. .++.+++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            589999999999999999 99999988 5555778888888889999999999999999887654 56789999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC---CcC
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NIN  251 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~---~~~  251 (283)
                      |||+++++||+++..|+.++.++.  ++.|.+|||||+||.     ..+.+..+++++++++++++|+||||++   ++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~  156 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-----SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  156 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccch-----hccchhHHHHHHHHHHCCCEEEEEecccCCcCcC
Confidence            999999999999999999998874  344557999999972     2234568889999999999999999997   559


Q ss_pred             HHHHHHHHH
Q 023335          252 VNKIFKFIM  260 (283)
Q Consensus       252 v~~lf~~l~  260 (283)
                      |+++|++|+
T Consensus       157 V~e~F~~lA  165 (165)
T d1z06a1         157 VEAIFMTLA  165 (165)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999873

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.96  E-value=6.2e-30  Score=204.38  Aligned_cols=159  Identities=18%  Similarity=0.258  Sum_probs=124.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .++||+++|++|||||||+ ++.++++. ...||.+.++.  .+..+  .+.+.+||++|++.+...+..++.+++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeee--eEEEEEeeccccccccccccccccccchhhc
Confidence            3799999999999999999 99999988 56678777654  44444  4678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      |||+++.++|+.+..|+..+.+.  .++.|.+|||||.|+....  .............++..+++++++||++|+||++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            99999999999999888877554  3355667999999962111  1111112222233445567899999999999999


Q ss_pred             HHHHHHHHH
Q 023335          255 IFKFIMAKL  263 (283)
Q Consensus       255 lf~~l~~~i  263 (283)
                      +|++|++.+
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=5.1e-30  Score=206.86  Aligned_cols=159  Identities=16%  Similarity=0.212  Sum_probs=123.1

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .+++||+++|++|||||||+ ++.++++....++.+.+.  ..+...+  +.+.+||++|++.+...+..+++.+|++|+
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   89 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE--EEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeE--EEeccCC--eeEeEeeccccccchhHHHHHhhccceeEE
Confidence            35799999999999999999 999999886667766654  3444444  678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHH-HHHHHHcCCcEEEEcCCCCcCHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQA-RAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |||+++..++.++..|+.++....  .+.|++|||||+||.   .........+.. ...++..++.+++|||++|+||+
T Consensus        90 v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~  166 (176)
T d1fzqa_          90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL---TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (176)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST---TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccc---ccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence            999999999999988887766542  244557999999972   221111111111 12233445679999999999999


Q ss_pred             HHHHHHHHHH
Q 023335          254 KIFKFIMAKL  263 (283)
Q Consensus       254 ~lf~~l~~~i  263 (283)
                      ++|++|++.+
T Consensus       167 e~~~~l~~~i  176 (176)
T d1fzqa_         167 DGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=6.2e-30  Score=207.75  Aligned_cols=161  Identities=18%  Similarity=0.202  Sum_probs=120.8

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .+.+||+++|++|||||||+ ++.++.+....+|.+....  .+...  .+.+.+||++|++.+..++..+++++|++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   90 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF   90 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEE--EEeeC--CEEEEEEecccccccchhHHhhhccceeEEE
Confidence            34799999999999999999 9999988877777776654  33344  4678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH-CC-CCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW-NQ-TAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~-~~-~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      |||+++..++.+...|+..+... .. +.|++|||||+|+....+   .+.+ .......++..++.+++|||++|+||+
T Consensus        91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS---ASEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC---HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC---HHHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            99999999999998888765543 33 345579999999621111   1111 111122234446789999999999999


Q ss_pred             HHHHHHHHHHhC
Q 023335          254 KIFKFIMAKLFN  265 (283)
Q Consensus       254 ~lf~~l~~~i~~  265 (283)
                      ++|++|++.+.+
T Consensus       168 e~~~~l~~~i~~  179 (182)
T d1moza_         168 EGLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998855

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=7.2e-29  Score=198.04  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=121.4

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +.+||+++|++|||||||+ +|.++.+....+|.+....  .+..+  .+.+.+||++|++.+...+..+++.++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeee--ecccc--ccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            3689999999999999999 9998887776677775543  44444  47789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHh-HC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcC
Q 023335          178 FDLTSRCTLNSIVGWYSEARK-WN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNIN  251 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~-~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~~  251 (283)
                      ||+++..++.....|+..... .. .+.|.+||+||+|+.    +.  ....+....+    ++..++.+++|||++|+|
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  150 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP----GA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGED  150 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST----TC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccc----cc--cCHHHHHHHHHhhhhhcCCCEEEEEECCCCCC
Confidence            999999999988766655543 22 345557999999962    21  1222222221    122345789999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 023335          252 VNKIFKFIMAKLFNL  266 (283)
Q Consensus       252 v~~lf~~l~~~i~~~  266 (283)
                      |+++|++|++.+.++
T Consensus       151 v~e~~~~l~~~i~~r  165 (165)
T d1ksha_         151 LLPGIDWLLDDISSR  165 (165)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999988653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=1.6e-29  Score=203.71  Aligned_cols=158  Identities=17%  Similarity=0.200  Sum_probs=122.3

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +.+||+++|++|||||||+ +++++.+....+|.+....  .....  .+.+.+||++|++.+...+..++++++++|+|
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEE--EEEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEE--Eeecc--ceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            4799999999999999999 9999888777777776543  33333  47789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH-C-CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK  254 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~-~-~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  254 (283)
                      ||+++.+++.++..|+..+.+. . .+.|++||+||+||.+.   .....+ .+...+.++..++.++++||++|+||+|
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc---ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            9999999999998887776543 2 34555799999996211   111111 1222233344466789999999999999


Q ss_pred             HHHHHHHHH
Q 023335          255 IFKFIMAKL  263 (283)
Q Consensus       255 lf~~l~~~i  263 (283)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.94  E-value=1.4e-27  Score=188.59  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=120.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  179 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D  179 (283)
                      +||+++|++|||||||+ +++++++...+++....    ....+...+.+.+||++|.+.+......+++.+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            69999999999999999 99999887544433322    22344566889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC-CC-CceEEEeecCCCCCCCCCCccc-chHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335          180 LTSRCTLNSIVGWYSEARKWN-QT-AIPILIGTKFDDFVRLPPDLQW-TIATQARAYAKAMKATLFFSSATHNINVNKIF  256 (283)
Q Consensus       180 ~~~~~s~~~~~~~~~~i~~~~-~~-~~~ilvgnK~DL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  256 (283)
                      ++++.++..+..|+.++.... .. .|.++++||.|+..   ..... +..+....+++..+++++++||++|+||+++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN---AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccc---cccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            999999999988887776543 23 34469999999621   11111 11233334555667889999999999999999


Q ss_pred             HHHHHHH
Q 023335          257 KFIMAKL  263 (283)
Q Consensus       257 ~~l~~~i  263 (283)
                      ++|++++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=5.3e-25  Score=176.90  Aligned_cols=157  Identities=16%  Similarity=0.195  Sum_probs=114.8

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +++||+|+|.+|||||||+ ++.++++....++.+...  ......+  +.+.+||+++.+........++..+++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeE--EEEeecc--eEEEEeccccccccccchhhhhccceeeeee
Confidence            4699999999999999999 999999886556555433  2333333  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccc-h-HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWT-I-ATQARAYAKAMKATLFFSSATHNINVN  253 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~  253 (283)
                      +|.++.+++.....++......  ....|++||+||+|+    +...... . .......+...+++++++||++|+||+
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl----~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV----KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS----TTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccc----cccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999998887665555433  345566899999996    2221111 1 111111223345689999999999999


Q ss_pred             HHHHHHHHHH
Q 023335          254 KIFKFIMAKL  263 (283)
Q Consensus       254 ~lf~~l~~~i  263 (283)
                      ++|++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.91  E-value=2.7e-24  Score=170.60  Aligned_cols=162  Identities=18%  Similarity=0.221  Sum_probs=122.5

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +++||+++|++|||||||+ +++++++....++.+....  ....+  .+.+.+||.+|.+.+......++..+++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeee--eeccC--ceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            3689999999999999999 9999998876666654432  33333  46788899999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHh-HCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          178 FDLTSRCTLNSIVGWYSEARK-WNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       178 ~D~~~~~s~~~~~~~~~~i~~-~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      +|+++..++.....++..... ... ..++++|+||.|+.....  ......+....++...+++|+++||++|.||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc--HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            999999998888765544443 233 344479999999722111  0111133334455566789999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023335          256 FKFIMAKLFNL  266 (283)
Q Consensus       256 f~~l~~~i~~~  266 (283)
                      |++|++.+.++
T Consensus       158 ~~~l~~~l~~k  168 (169)
T d1upta_         158 MEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999988654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.2e-24  Score=175.52  Aligned_cols=159  Identities=20%  Similarity=0.172  Sum_probs=110.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +++||++||+.|||||||+ +|..+.+    +|+|..    +..++...+.+++||++|++.|..++..|++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIV----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEE----EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEE----EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            4799999999999999999 9987665    344433    223333457789999999999999999999999999999


Q ss_pred             EECCChhhHH-----------HHHHHHHHHHhHCC-CCceEEEeecCCCCC----------CCCCCcccchHHHH-HHHH
Q 023335          178 FDLTSRCTLN-----------SIVGWYSEARKWNQ-TAIPILIGTKFDDFV----------RLPPDLQWTIATQA-RAYA  234 (283)
Q Consensus       178 ~D~~~~~s~~-----------~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~----------~l~~~~~~~~~~~~-~~~~  234 (283)
                      ||+++.++|.           ....|...+..... ..|.+++|||+|+..          ..+.........++ ..+.
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            9999988763           33455555554433 345579999999521          01111111111121 1111


Q ss_pred             HH----------cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          235 KA----------MKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       235 ~~----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ..          .++.+++|||++|.||+++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            11          12456789999999999999999887764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=4.5e-23  Score=166.23  Aligned_cols=160  Identities=17%  Similarity=0.160  Sum_probs=114.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch--------hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  168 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~  168 (283)
                      .-+|+|+|.+|||||||+ ++++.+..  ...+.+..+.........+  ..+.+|||+|........        ..++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            447999999999999999 99988654  4444333344444445555  457889999986654333        2346


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSAT  247 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~  247 (283)
                      ++||++|+|+|+++..+... ..|++.++....+.|+|+|+||+|+   ...     ..+..+.+.+.++ ..++++||+
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl---~~~-----~~~~~~~~~~~~~~~~~~~iSA~  153 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDA---AKY-----PEEAMKAYHELLPEAEPRMLSAL  153 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGG---CSS-----HHHHHHHHHHTSTTSEEEECCTT
T ss_pred             ccccceeeeechhhhhcccc-cchhhheeccccchhhhhhhccccc---ccC-----HHHHHHHHHhhcccCceEEEecC
Confidence            78999999999988755433 4566666666667777899999996   111     1333445555555 468899999


Q ss_pred             CCcCHHHHHHHHHHHHhCCcccc
Q 023335          248 HNINVNKIFKFIMAKLFNLPWTV  270 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~~~~~  270 (283)
                      +|.||++++++|++.+.+.|+-.
T Consensus       154 ~~~gi~~L~~~i~~~lpe~p~~~  176 (178)
T d1wf3a1         154 DERQVAELKADLLALMPEGPFFY  176 (178)
T ss_dssp             CHHHHHHHHHHHHTTCCBCCCSS
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999887666543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.7e-24  Score=176.92  Aligned_cols=162  Identities=20%  Similarity=0.193  Sum_probs=119.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      +++||+++|+.|||||||+ +|..+.| .+.||.|.++.  .+  ....+.+++||++|++.+...+..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEY--PF--DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEE--EE--ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEE--EE--eccceeeeeccccccccccccccccccccceeeEe
Confidence            4799999999999999999 9998887 46789998754  23  33457789999999999999999999999999999


Q ss_pred             EECCChh-----------hHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCC----------CC-CcccchHHHHHHHH
Q 023335          178 FDLTSRC-----------TLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRL----------PP-DLQWTIATQARAYA  234 (283)
Q Consensus       178 ~D~~~~~-----------s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l----------~~-~~~~~~~~~~~~~~  234 (283)
                      ||.++.+           .++....|...+..... +.|.++++||+|+....          +. .......+....+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998754           35666778888776644 44557999999962100          00 00011122222322


Q ss_pred             HH----------cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          235 KA----------MKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       235 ~~----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ..          ..+.+++|||++|.||+++|+.+.+.|++
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            11          12346789999999999999999888864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=7.1e-23  Score=161.29  Aligned_cols=150  Identities=15%  Similarity=0.142  Sum_probs=113.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  180 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~  180 (283)
                      ||+++|++|||||||+ +++++.+....||.+....  .  .....+...+||+.|...+......++..+++++++||.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--E--LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--E--ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEE--E--eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            8999999999999999 9999988766666665432  2  233345678899999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHH-----------HHHcCCcEEEEcCC
Q 023335          181 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----------AKAMKATLFFSSAT  247 (283)
Q Consensus       181 ~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~e~Sa~  247 (283)
                      ++..++.....|+.......  .+.|+++++||.|+.....      ..+....+           ....++.+++|||+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  151 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS------EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  151 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC------HHHHHHHHTCSSCCC---CCSSCCEEEEEEBTT
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCC------HHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCC
Confidence            99999998887777766543  2445579999999632111      11111111           11223568999999


Q ss_pred             CCcCHHHHHHHHHH
Q 023335          248 HNINVNKIFKFIMA  261 (283)
Q Consensus       248 ~~~~v~~lf~~l~~  261 (283)
                      +|+||+|+|++|.+
T Consensus       152 tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         152 MRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTBSHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHhC
Confidence            99999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.5e-23  Score=163.73  Aligned_cols=149  Identities=17%  Similarity=0.194  Sum_probs=111.5

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhcc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK  169 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~  169 (283)
                      +||+++|.+|||||||+ ++++.+..  ...+++..+.....+...+.  .+.+||++|.......        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCc--eeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999 99987755  44444444444455556664  5778999997654322        334578


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  249 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  249 (283)
                      .+|++++++|.++..+++....|.+.+.......|+|+|+||+||..   +. ..        +.+..+.+++++||++|
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~---~~-~~--------~~~~~~~~~~~iSAk~~  147 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG---ET-LG--------MSEVNGHALIRLSARTG  147 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC---CC-CE--------EEEETTEEEEECCTTTC
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhh---hH-HH--------HHHhCCCcEEEEECCCC
Confidence            99999999999999888888877777776666677789999999721   11 11        01123568999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 023335          250 INVNKIFKFIMAKL  263 (283)
Q Consensus       250 ~~v~~lf~~l~~~i  263 (283)
                      .||++++++|.+.+
T Consensus       148 ~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         148 EGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.5e-22  Score=165.54  Aligned_cols=159  Identities=16%  Similarity=0.198  Sum_probs=105.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      .+||+++|++|||||||+ +|   .+. .+.||.|.+..  .+.+.  .+.+++||++|++.+...+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~--~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEY--DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEE--EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEE--EEeee--eeeeeeecccceeeecccccccccccceeEEE
Confidence            589999999999999999 99   345 67779887643  44444  46788999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHHHHhH--CCCCceEEEeecCCCCCC----------CCCCc-ccchHHHHHHHH
Q 023335          178 FDLTSRCT----------LNSIVGWYSEARKW--NQTAIPILIGTKFDDFVR----------LPPDL-QWTIATQARAYA  234 (283)
Q Consensus       178 ~D~~~~~s----------~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~----------l~~~~-~~~~~~~~~~~~  234 (283)
                      ||.++..+          ++....|+..+...  ..+.|++|+|||+|+...          .++.. .....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99998644          34444455544332  235556799999997311          00000 001123333332


Q ss_pred             HH-----------cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          235 KA-----------MKATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       235 ~~-----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      ..           ..+.+++|||+++.||+++|+.+.+.+++
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            22           12446689999999999999998887764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.86  E-value=1.6e-21  Score=156.78  Aligned_cols=155  Identities=15%  Similarity=0.162  Sum_probs=109.7

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  176 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil  176 (283)
                      .+..||+++|++|||||||+ +++++.+....++.+.+..  .+.+++.  .+.+||+.++..+......+++..+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGM--TFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTE--EEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee--EEEeccc--ccccccccchhhhhhHHhhhhcccceeee
Confidence            34689999999999999999 9999988866676665543  4455554  46789999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----------------Hc
Q 023335          177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----------------AM  237 (283)
Q Consensus       177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----------------~~  237 (283)
                      ++|+++...+.....++......  ..+.|.+|++||.|+....       ...+..+...                 ..
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  159 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI-------SEERLREMFGLYGQTTGKGSVSLKELNAR  159 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC-------CHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC-------CHHHHHHHHhhcccchhhhhhhHHHhhcC
Confidence            99999999998887655444432  3456778999999963211       1222222221                 12


Q ss_pred             CCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          238 KATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       238 ~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ++.+++|||++|+||+|+|+||++.+
T Consensus       160 ~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         160 PLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            34688999999999999999998754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=8.3e-21  Score=152.93  Aligned_cols=158  Identities=13%  Similarity=0.076  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----ccc---hhhhcccCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDH---VPIACKDAV  172 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~---~~~~~~~ad  172 (283)
                      .|+++|.+|||||||+ ++++.... ...+..+........ .......+.+|||+|....    ..+   ....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4899999999999999 99887655 333322222222222 2233345788999995431    112   223467899


Q ss_pred             EEEEEEECCCh--hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335          173 AILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI  250 (283)
Q Consensus       173 ~iilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  250 (283)
                      ++++++|....  +++.....|+........+.|.|+|+||+|+   ..   . ...++..+.....+.++|++||++|+
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~---~~---~-~~~~~~~~~~~~~~~~~~~iSA~tg~  154 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL---LE---E-EAVKALADALAREGLAVLPVSALTGA  154 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTT---SC---H-HHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhh---hh---H-HHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence            99999998654  2333334444433322334577899999996   21   1 22344555556678899999999999


Q ss_pred             CHHHHHHHHHHHHhCCc
Q 023335          251 NVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       251 ~v~~lf~~l~~~i~~~~  267 (283)
                      ||+++++.|.+.+-..+
T Consensus       155 gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         155 GLPALKEALHALVRSTP  171 (180)
T ss_dssp             THHHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHHhhcC
Confidence            99999999988886544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2.4e-20  Score=148.98  Aligned_cols=156  Identities=19%  Similarity=0.175  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc---------cchhhhcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIACK  169 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~~  169 (283)
                      .|+|+|.+|||||||+ ++++....  ...+.+........+...+  ..+.+||++|.....         .....++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999 99987654  3333222222223333333  557889999953321         12233467


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN  249 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  249 (283)
                      .+|+++++.|.++...... ..|+..++...  .|+|+|+||+|+   .    .....+...++.+.....++++||++|
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~~--~pviiv~NK~Dl---~----~~~~~~~~~~~~~~~~~~~i~iSAk~g  149 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKST--VDTILVANKAEN---L----REFEREVKPELYSLGFGEPIPVSAEHN  149 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHHT--CCEEEEEESCCS---H----HHHHHHTHHHHGGGSSCSCEECBTTTT
T ss_pred             cCcEEEEeecccccccccc-ccccccccccc--ccccccchhhhh---h----hhhhhHHHHHHHhcCCCCeEEEecCCC
Confidence            9999999999877655433 45566666543  467899999996   1    111122223333333456799999999


Q ss_pred             cCHHHHHHHHHHHHhCCccc
Q 023335          250 INVNKIFKFIMAKLFNLPWT  269 (283)
Q Consensus       250 ~~v~~lf~~l~~~i~~~~~~  269 (283)
                      .||++++++|.+.+.++...
T Consensus       150 ~gid~L~~~i~~~l~e~~~~  169 (171)
T d1mkya1         150 INLDTMLETIIKKLEEKGLD  169 (171)
T ss_dssp             BSHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCCCCCCC
Confidence            99999999999998766543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=5.7e-20  Score=144.79  Aligned_cols=147  Identities=15%  Similarity=0.213  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc---------cchhhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIAC  168 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~  168 (283)
                      +||+++|.+|||||||+ ++++.+..  ...+.+........+..++  ..+.+|||+|.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999 99877644  4444333334444555665  457789999943211         1112235


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH  248 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  248 (283)
                      ..+|++++|+|.++..+.+...-+.     .....++++++||.|+.   ...    ..++.... ...+.+++++||++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-----~~~~~~~i~~~~k~d~~---~~~----~~~~~~~~-~~~~~~~~~vSA~~  145 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-----RIKNKRYLVVINKVDVV---EKI----NEEEIKNK-LGTDRHMVKISALK  145 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-----HHTTSSEEEEEEECSSC---CCC----CHHHHHHH-HTCSTTEEEEEGGG
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-----hcccccceeeeeecccc---chh----hhHHHHHH-hCCCCcEEEEECCC
Confidence            7899999999999887655433222     22355678999999972   211    12222211 12356899999999


Q ss_pred             CcCHHHHHHHHHHH
Q 023335          249 NINVNKIFKFIMAK  262 (283)
Q Consensus       249 ~~~v~~lf~~l~~~  262 (283)
                      |+||++++++|.++
T Consensus       146 g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         146 GEGLEKLEESIYRE  159 (160)
T ss_dssp             TCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.81  E-value=2.7e-20  Score=150.08  Aligned_cols=162  Identities=14%  Similarity=0.129  Sum_probs=105.2

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccccccc--cc----eeee--eEEEEEECCeEEEEEEEeCCCCCCcccchhhh
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ--MA----GLNL--INKTLMVQGARIAFSIWDVGGDSRSFDHVPIA  167 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~--t~----~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~  167 (283)
                      +.+.++|+++|.+|+|||||+ ++++........  +.    |...  ....+..++  ..+.++|++|+..|.......
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~   79 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   79 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhh
Confidence            456889999999999999999 998644331111  11    1111  111222333  557789999999888888888


Q ss_pred             cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc----CCcEEE
Q 023335          168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATLFF  243 (283)
Q Consensus       168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~----~~~~~e  243 (283)
                      +..+|++++|+|.++....+....| ..+..  .+.|+++|.||+|+   ...+......+..+.+.+..    +.++++
T Consensus        80 l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~--~~~p~iiv~NKiD~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  153 (179)
T d1wb1a4          80 ADIIDLALIVVDAKEGPKTQTGEHM-LILDH--FNIPIIVVITKSDN---AGTEEIKRTEMIMKSILQSTHNLKNSSIIP  153 (179)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCBCEEEECTTS---SCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhhccccccccccccccchhhhhhh-hhhhh--cCCcceeccccccc---cCHHHHHHHHHHHHHHHHHhhcCCCCeEEE
Confidence            9999999999999876543332222 22332  24567899999996   22111111223333333332    357899


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhCC
Q 023335          244 SSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                      +||++|+|++++++.|.+.+.+.
T Consensus       154 iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         154 ISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEccCCcCHHHHHHHHHhcCCcc
Confidence            99999999999999999888654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.6e-19  Score=148.45  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-cchhhhcccCcEEEEEEE
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILFMFD  179 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~ad~iilv~D  179 (283)
                      +|+|+|++|||||||+ +++++.+...++|.+.++....+. ++..+.+.+||++|++.+. ..+..++..++++++|||
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999 999999887677777665433322 4456789999999999875 466778899999999999


Q ss_pred             CCChhhH-HHHHHHHHHHHh-H--CCCCce-EEEeecCCCC
Q 023335          180 LTSRCTL-NSIVGWYSEARK-W--NQTAIP-ILIGTKFDDF  215 (283)
Q Consensus       180 ~~~~~s~-~~~~~~~~~i~~-~--~~~~~~-ilvgnK~DL~  215 (283)
                      +++..++ .....|+..+.. .  ....+| +||+||+||.
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~  121 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA  121 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccC
Confidence            9997764 444445444322 2  223445 6889999974

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=5.5e-19  Score=147.07  Aligned_cols=161  Identities=19%  Similarity=0.196  Sum_probs=108.7

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  177 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv  177 (283)
                      ..+||+++|+.|||||||+ ++..+.+   .||+|++.  ..+.+++  +.+++||++|++.++..+..++.+++++++|
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            3689999999999999999 9976544   47888654  4555655  6789999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHH-HHHHHHHhHC-CCCceEEEeecCCCCCCC---C---------CC------------
Q 023335          178 FDLTSRCT----------LNSIV-GWYSEARKWN-QTAIPILIGTKFDDFVRL---P---------PD------------  221 (283)
Q Consensus       178 ~D~~~~~s----------~~~~~-~~~~~i~~~~-~~~~~ilvgnK~DL~~~l---~---------~~------------  221 (283)
                      +|+++.+.          +.+.. .|...+.... .+.|++|+|||+||....   +         +-            
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            99986532          22222 3333333322 345557999999973110   0         00            


Q ss_pred             -cccchHHHHHHHH-----HHc--------CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335          222 -LQWTIATQARAYA-----KAM--------KATLFFSSATHNINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       222 -~~~~~~~~~~~~~-----~~~--------~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  266 (283)
                       .......++..+.     +.+        .+-.++|||.++.||+.+|+.+.+.|+++
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence             0000122232222     111        12245799999999999999887777643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=1.7e-18  Score=139.67  Aligned_cols=154  Identities=14%  Similarity=0.237  Sum_probs=97.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------------cch
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------------DHV  164 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------~~~  164 (283)
                      .+||+++|.+|||||||+ ++++....  ..++.+........+.+++..  +.++|++|.....            ...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCce--eeeeccCCccccccccccccccchhHHH
Confidence            589999999999999999 99987643  444433333333455666654  6778999864321            223


Q ss_pred             hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH----c-CC
Q 023335          165 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----M-KA  239 (283)
Q Consensus       165 ~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~----~-~~  239 (283)
                      ..+++.+|++++|+|++....- ....++..+...  +.|.|+|+||+|+   .... ... .++..+..+.    . ..
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~~--~~~~i~v~nK~D~---~~~~-~~~-~~~~~~~~~~~~~~~~~~  157 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITR-QDQRMAGLMERR--GRASVVVFNKWDL---VVHR-EKR-YDEFTKLFREKLYFIDYS  157 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT--TCEEEEEEECGGG---STTG-GGC-HHHHHHHHHHHCGGGTTS
T ss_pred             HHHHhcCCEEEEeecccccchh-hHHHHHHHHHHc--CCceeeeccchhh---hcch-hhh-hhhHHHHHHHHhcccCCC
Confidence            3456899999999999765432 223444444442  3466899999996   2222 211 2222222222    1 35


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          240 TLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +++++||++|.||+++++.|.+.+
T Consensus       158 ~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         158 PLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHH
Confidence            789999999999999999996654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=1.1e-18  Score=140.92  Aligned_cols=156  Identities=15%  Similarity=0.182  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCC----Ccccchhh---hcccCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPI---ACKDAV  172 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----~~~~~~~~---~~~~ad  172 (283)
                      +|+|+|.+|||||||+ ++++.... ..++.++.+.......+.+. ..+.+|||||..    ....+...   .+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999 99887655 44443223322333333321 246789999952    22223222   346788


Q ss_pred             EEEEEEECCChhhHHHHH---HHHHHHHhH---CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEE
Q 023335          173 AILFMFDLTSRCTLNSIV---GWYSEARKW---NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFS  244 (283)
Q Consensus       173 ~iilv~D~~~~~s~~~~~---~~~~~i~~~---~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~e~  244 (283)
                      .++++++....+......   .+......+   ..+.|.|+|+||+|+    .+.     .+..+.+.+.+  +.+++.+
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl----~~~-----~~~~~~~~~~~~~~~~v~~i  152 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM----PEA-----AENLEAFKEKLTDDYPVFPI  152 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS----TTH-----HHHHHHHHHHCCSCCCBCCC
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccch----HhH-----HHHHHHHHHHhccCCcEEEE
Confidence            998888876554322222   222222222   124566899999996    211     22334444444  6788999


Q ss_pred             cCCCCcCHHHHHHHHHHHHhCCc
Q 023335          245 SATHNINVNKIFKFIMAKLFNLP  267 (283)
Q Consensus       245 Sa~~~~~v~~lf~~l~~~i~~~~  267 (283)
                      ||++|.||+++++.|.+.+.+.+
T Consensus       153 SA~~g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         153 SAVTREGLRELLFEVANQLENTP  175 (185)
T ss_dssp             SSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             ECCCCCCHHHHHHHHHHhhhhCC
Confidence            99999999999999999987655

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=8.1e-18  Score=135.18  Aligned_cols=148  Identities=14%  Similarity=0.153  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc---------------cch
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------------DHV  164 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------~~~  164 (283)
                      .|+++|.+|||||||+ ++++.+.. +.++.+..+.  ..+...+    +.+|||||.....               ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999 99987765 5555332222  2333333    5679999953211               112


Q ss_pred             hhhcccCcEEEEEEECCChhhHHHHH----------HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH
Q 023335          165 PIACKDAVAILFMFDLTSRCTLNSIV----------GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA  234 (283)
Q Consensus       165 ~~~~~~ad~iilv~D~~~~~s~~~~~----------~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~  234 (283)
                      ...++.+|++++|+|.+.........          .+++.+..  .+.|.|+|+||+|+   +...     ......+.
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~---~~~~-----~~~~~~~~  145 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDK---IKNV-----QEVINFLA  145 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGG---CSCH-----HHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeeh---hhhH-----HHHHHHHH
Confidence            33457899999999987653322211          22333333  24566899999996   2211     12222223


Q ss_pred             HHcC-------CcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335          235 KAMK-------ATLFFSSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       235 ~~~~-------~~~~e~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      +.++       ..++++||++|.||+++++.|.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         146 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            3322       247889999999999999999988754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=2.5e-17  Score=137.46  Aligned_cols=158  Identities=12%  Similarity=0.114  Sum_probs=96.7

Q ss_pred             EEEEcCCCCcHHHhH-hhhcCccc-cccccc--eeeeeEE--------------EEEECCeEEEEEEEeCCCCCCcccch
Q 023335          103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMA--GLNLINK--------------TLMVQGARIAFSIWDVGGDSRSFDHV  164 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~--~~~~~~~--------------~~~~~~~~~~l~i~Dt~G~~~~~~~~  164 (283)
                      |+|+|.+++|||||+ ++++.... .....+  .......              ...++.....+.++||||++.|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            999999999999999 99765332 111111  1010000              01122233467889999999998888


Q ss_pred             hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc---------------hHHH
Q 023335          165 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT---------------IATQ  229 (283)
Q Consensus       165 ~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~---------------~~~~  229 (283)
                      ...+..+|++|+|+|+.+.-.-+. ...+..+...  +.|+|+|.||+|+...-.......               ..+.
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  164 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTK  164 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHH
Confidence            888899999999999987544333 2333333332  457789999999743211110000               0011


Q ss_pred             H----HHHHHHc--------------CCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          230 A----RAYAKAM--------------KATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       230 ~----~~~~~~~--------------~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      .    ..+.+..              .++++.+||++|.|++++++.|....
T Consensus       165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         165 VYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             HHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            1    1111110              13578899999999999999987765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.70  E-value=6.1e-17  Score=131.83  Aligned_cols=162  Identities=12%  Similarity=0.133  Sum_probs=104.2

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cc--cc--cceeeeeEEEEE-------------------ECCeEEEEEE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RS--LQ--MAGLNLINKTLM-------------------VQGARIAFSI  151 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~--~~--t~~~~~~~~~~~-------------------~~~~~~~l~i  151 (283)
                      ...++|+++|..++|||||+ ++++....  ..  ..  |....+......                   .......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            35789999999999999999 99764322  11  11  111111111110                   0122456889


Q ss_pred             EeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHH
Q 023335          152 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR  231 (283)
Q Consensus       152 ~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~  231 (283)
                      +||||++.|.......+..+|++++|+|+.+...-....+.+..+.... ..++|++.||+|+   ..........+...
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-~~~iiv~inK~D~---~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-QKNIIIAQNKIEL---VDKEKALENYRQIK  158 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGG---SCHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-Cccceeeeecccc---hhhHHHHHHHHHHH
Confidence            9999999988877778889999999999987532233333333333332 2344788999996   22111112244455


Q ss_pred             HHHHHcC---CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          232 AYAKAMK---ATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       232 ~~~~~~~---~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ++.+..+   ++++++||++|+|+++|++.+.+.+
T Consensus       159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            5555443   5789999999999999999988765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=2.8e-16  Score=127.57  Aligned_cols=149  Identities=18%  Similarity=0.234  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc---cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-------------cc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-------------DH  163 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~  163 (283)
                      .+|+|+|.+|||||||+ ++++.+..   ...++...+.  .......   .+.+.|+.|.....             ..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~--~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL--NFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCE--EEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeec--ccccccc---cceEEEEEeeccccccccccchhhhHHhh
Confidence            48999999999999999 99876543   2223222222  1222222   23345555532211             11


Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH----cCC
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----MKA  239 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~----~~~  239 (283)
                      ....+..+|++++++|+++...-+ ...+++.++..  +.|+++|+||+|+   ++..   ...+....+.+.    ...
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~~--~~piivv~NK~D~---~~~~---~~~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSND-DVQMYEFLKYY--GIPVIVIATKADK---IPKG---KWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT--TCCEEEEEECGGG---SCGG---GHHHHHHHHHHHHTCCTTS
T ss_pred             hhccccchhhhhhhhhcccccccc-ccccccccccc--cCcceechhhccc---cCHH---HHHHHHHHHHHHhcccCCC
Confidence            123345779999999998654322 23455555543  3467899999996   3222   223333333333    345


Q ss_pred             cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          240 TLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       240 ~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +++.+||++|.|+++++++|.+.+
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHh
Confidence            789999999999999999998876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=5.1e-17  Score=133.37  Aligned_cols=163  Identities=15%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc---cccc-cceeee--eEEEEEE------------------------CCeE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE---RSLQ-MAGLNL--INKTLMV------------------------QGAR  146 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~---~~~~-t~~~~~--~~~~~~~------------------------~~~~  146 (283)
                      .+.++|+++|..++|||||+ ++++..-.   .... ....+.  ....+..                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            34689999999999999999 99763221   0000 000000  0001000                        1123


Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      ..+.+.|+||+..|....-..+..+|++|+|+|+.+.-.-...+..+..+... ...+.||+.||+|+   .........
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i~~iIV~vNK~Dl---~~~~~~~~~  161 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDV---VSKEEALSQ  161 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECGGG---SCHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CCceeeeccccCCC---ccchHHHHH
Confidence            46889999999998877777788999999999998752111222222333322 22345778999997   222222222


Q ss_pred             HHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335          227 ATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF  264 (283)
Q Consensus       227 ~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~  264 (283)
                      ..+..++....   +++++.+||++|.||+++++.|...+.
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            33444444433   367899999999999999999887754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=6.4e-16  Score=123.30  Aligned_cols=157  Identities=17%  Similarity=0.131  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc---------ccchhhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC  168 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~  168 (283)
                      -.|+|+|.+|||||||+ ++++.+..  ....++...........+...  +..||++|....         ......+.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCce--eEeecCCCceecchhhhhhhhhhccccch
Confidence            35899999999999999 99987755  333333333333344444433  456888875431         12223344


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023335          169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSAT  247 (283)
Q Consensus       169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~  247 (283)
                      ..+++++++.|.++...  ....+...+.+  ...++++|.||.|+   +..  ..........+...++ .+++++||+
T Consensus        84 ~~~~~~l~~~d~~~~~~--~~~~~~~~l~~--~~~~~i~v~~k~d~---~~~--~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTP--DDEMVLNKLRE--GKAPVILAVNKVDN---VQE--KADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             CCEEEEEEEEETTCCCH--HHHHHHHHHHS--SSSCEEEEEESTTT---CCC--HHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             hhcceeEEEEecCccch--hHHHHHHHhhh--ccCceeeeeeeeec---cch--hhhhhhHhhhhhhhcCCCCEEEEeCc
Confidence            67888888998775432  22223333332  34566899999996   222  2233455566666666 479999999


Q ss_pred             CCcCHHHHHHHHHHHHhCCcc
Q 023335          248 HNINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       248 ~~~~v~~lf~~l~~~i~~~~~  268 (283)
                      +|.|++++++.|.+.+.+.++
T Consensus       155 ~g~gi~~L~~~i~~~lpe~~~  175 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHLPEATH  175 (179)
T ss_dssp             TTTTHHHHHHHHHTTCCBCCC
T ss_pred             CCCCHHHHHHHHHHhCCCCCC
Confidence            999999999999988766654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.61  E-value=5.5e-16  Score=126.15  Aligned_cols=160  Identities=11%  Similarity=0.100  Sum_probs=107.1

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC-------ccc-----c---ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN-------EQE-----R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD  162 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~-------~~~-----~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~  162 (283)
                      +.++|+++|..++|||||+ ++++.       .+.     .   .....|++.....+.+......+.+.||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            3689999999999999999 88641       000     0   001224444444445544556788899999999887


Q ss_pred             chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-cchHHHHHHHHHHcC---
Q 023335          163 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMK---  238 (283)
Q Consensus       163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~~~~~---  238 (283)
                      .....+..+|++|+|+|+.+.-.-+. ++.+..+.... ..+.|++.||+|+   ..+... ..+..+++.+...++   
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~~-~~~iIv~iNK~D~---~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQIG-VEHVVVYVNKADA---VQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHTT-CCCEEEEEECGGG---CSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHhc-CCcEEEEEecccc---cccHHHHHHHHHHHHHHHHHhCCCc
Confidence            77778899999999999987543222 33333333322 3345778999997   322221 223556777776665   


Q ss_pred             --CcEEEEcCCCC----------cCHHHHHHHHHHHH
Q 023335          239 --ATLFFSSATHN----------INVNKIFKFIMAKL  263 (283)
Q Consensus       239 --~~~~e~Sa~~~----------~~v~~lf~~l~~~i  263 (283)
                        ++++.+||++|          .|+.++++.+.+.+
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence              46899999998          58899998876654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.7e-15  Score=123.75  Aligned_cols=110  Identities=14%  Similarity=0.059  Sum_probs=76.7

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhc----ccCcEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC----KDAVAI  174 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~----~~ad~i  174 (283)
                      +..|+|+|.+|||||||+ +++++++.   ++++.+.....+..+  ...+.+||++|++.+......++    ..++.+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~---~~tt~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR---PTVVSQEPLSAADYD--GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC---CBCCCSSCEEETTGG--GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEecceEEEEEeC--CeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            458999999999999999 99988764   333333333333333  34578899999998776655544    456888


Q ss_pred             EEEEECC-ChhhHHHHHHHHHHH----HhHCC-CCceEEEeecCCC
Q 023335          175 LFMFDLT-SRCTLNSIVGWYSEA----RKWNQ-TAIPILIGTKFDD  214 (283)
Q Consensus       175 ilv~D~~-~~~s~~~~~~~~~~i----~~~~~-~~~~ilvgnK~DL  214 (283)
                      ++++|.. +..+++.+..|+..+    ..... +.|+++|+||+|+
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~  123 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  123 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecc
Confidence            9999876 466777776665443    33343 4455789999997

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.8e-14  Score=113.89  Aligned_cols=160  Identities=12%  Similarity=0.069  Sum_probs=79.5

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc-------hhhh
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-------VPIA  167 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~  167 (283)
                      ....+||+++|.+|||||||+ ++.+.+.. ......+................+..++..+.......       ....
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            334789999999999999999 99887765 22221111111112222222222222333222211111       1111


Q ss_pred             ---cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc--CCcEE
Q 023335          168 ---CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLF  242 (283)
Q Consensus       168 ---~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~  242 (283)
                         ....+.++.+.|......... ..++..+...  ..+.++++||+|+   ..........+..++..+..  ..+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~v~~k~D~---~~~~~~~~~~~~~~~~l~~~~~~~~~i  166 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS--NIAVLVLLTKADK---LASGARKAQLNMVREAVLAFNGDVQVE  166 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT--TCCEEEEEECGGG---SCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             hhhhhheeEEEEeecccccchhHH-HHHHHHhhhc--cccccchhhhhhc---cCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence               123345555556554433222 3344444432  4456789999996   22222222233333333333  24688


Q ss_pred             EEcCCCCcCHHHHHHHHHHH
Q 023335          243 FSSATHNINVNKIFKFIMAK  262 (283)
Q Consensus       243 e~Sa~~~~~v~~lf~~l~~~  262 (283)
                      .+||++|.||+++++.|.+.
T Consensus       167 ~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         167 TFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             ECBTTTTBSHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.52  E-value=6.6e-14  Score=115.78  Aligned_cols=155  Identities=13%  Similarity=0.049  Sum_probs=95.3

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhhcC--cccc------------------------------ccccceeeeeEEEEEEC
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYVGN--EQER------------------------------SLQMAGLNLINKTLMVQ  143 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~  143 (283)
                      ....++|+++|..++|||||+ +++..  ....                              .....+.........+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            345789999999999999999 98521  1100                              00011222222222222


Q ss_pred             CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc
Q 023335          144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ  223 (283)
Q Consensus       144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~  223 (283)
                      .....+.+.|+||++.|.......+..+|++|+|+|+.+.-.-+....| ..+.. ..-+.+|++.||+|+.+. ++...
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~~~~~-~gv~~iiv~vNK~D~~~~-~~~~~  162 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-YIASL-LGIKHIVVAINKMDLNGF-DERVF  162 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-HHHHH-TTCCEEEEEEECTTTTTS-CHHHH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-HHHHH-cCCCEEEEEEEccccccc-cceeh
Confidence            3345678899999999988777788999999999999875433322222 22222 212335789999997211 11111


Q ss_pred             cchHHHHHHHHHHcCC-----cEEEEcCCCCcCHHH
Q 023335          224 WTIATQARAYAKAMKA-----TLFFSSATHNINVNK  254 (283)
Q Consensus       224 ~~~~~~~~~~~~~~~~-----~~~e~Sa~~~~~v~~  254 (283)
                      ....+++..+.+..++     +++++||++|+||.+
T Consensus       163 ~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         163 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            2224566777777654     578899999999843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=1.3e-14  Score=118.79  Aligned_cols=142  Identities=11%  Similarity=0.083  Sum_probs=90.9

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhcC--------ccc-----cccc---cceeee--eEEEEEECCeEEEEEEEeCCCCCC
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVGN--------EQE-----RSLQ---MAGLNL--INKTLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~~--------~~~-----~~~~---t~~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      +.++|+++|..++|||||+ +++..        ...     ...+   ..|+..  ....+..++  ..+.|+||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            3689999999999999999 98631        000     1111   013332  333444444  5577899999999


Q ss_pred             cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCc-ccchHHHHHHHHHHc
Q 023335          160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKAM  237 (283)
Q Consensus       160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~  237 (283)
                      |.......+..+|++|||+|+++.-..+..+.|. .+...  +.|. |++.||+|+   ..... -....++++.+...+
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~~--gi~~iiv~iNK~D~---~~~~~~~~~~~~~i~~~l~~~  153 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQV--GVPYIVVFMNKVDM---VDDPELLDLVEMEVRDLLNQY  153 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHHT--TCCCEEEEEECGGG---CCCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHHc--CCCeEEEEEEeccc---CCCHHHHHHHHHHHHHHHHhc
Confidence            9888888889999999999998876655544443 33332  3344 567899996   22221 122345666666654


Q ss_pred             C-----CcEEEEcCCC
Q 023335          238 K-----ATLFFSSATH  248 (283)
Q Consensus       238 ~-----~~~~e~Sa~~  248 (283)
                      +     ++++..|+..
T Consensus       154 ~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         154 EFPGDEVPVIRGSALL  169 (204)
T ss_dssp             TSCTTTSCEEECCHHH
T ss_pred             CCCcccceeeeeechh
Confidence            4     4577788753

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.36  E-value=5.1e-13  Score=110.60  Aligned_cols=154  Identities=13%  Similarity=0.117  Sum_probs=92.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCc--cc-------------------------c---ccccceeeeeEEEEEECCeEEE
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNE--QE-------------------------R---SLQMAGLNLINKTLMVQGARIA  148 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~--~~-------------------------~---~~~t~~~~~~~~~~~~~~~~~~  148 (283)
                      .++|+++|.-++|||||+ +++...  ..                         .   .....|.........++.....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            689999999999999999 885310  00                         0   0001122222222233334466


Q ss_pred             EEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhH------HHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC-
Q 023335          149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL------NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-  221 (283)
Q Consensus       149 l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~------~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-  221 (283)
                      +.+.||||+..|.......++-+|++|+|+|+.+...-      ....+.+..... ....++|++.||+|+....... 
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~~~iIv~iNK~D~~~~~~~~~  161 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLDQLIVAVNKMDLTEPPYDEK  161 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCTTCEEEEECGGGSSSTTCHH
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCCCceEEEEEcccCCCccccHH
Confidence            88999999999998888889999999999999875211      111111111111 2234567889999973211111 


Q ss_pred             cccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023335          222 LQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK  254 (283)
Q Consensus       222 ~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~  254 (283)
                      .......++..+...++     ++++.+||.+|.||.+
T Consensus       162 ~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         162 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            11122445556666554     3578899999999854

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=4.6e-13  Score=112.34  Aligned_cols=160  Identities=12%  Similarity=0.081  Sum_probs=81.6

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhc--Cccc-c---------------------------ccccceeeeeEEEEEECCeE
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVG--NEQE-R---------------------------SLQMAGLNLINKTLMVQGAR  146 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~--~~~~-~---------------------------~~~t~~~~~~~~~~~~~~~~  146 (283)
                      ...++|+++|..++|||||+ +++.  +... .                           .....|..............
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            34679999999999999999 8842  1100 0                           00000111111111112223


Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHH---HHHHHHHHHHhHCCCCceEEEeecCCCCCCC-C
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLN---SIVGWYSEARKWNQTAIPILIGTKFDDFVRL-P  219 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l-~  219 (283)
                      ..+.+.|+||+..|..........+|++++|+|+.+..   ++.   ...+.+..+.. ..-..+|++.||+|+...- .
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i~~iiv~iNKmD~~~~~~~  180 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGINHLVVVINKMDEPSVQWS  180 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCSSEEEEEECTTSTTCSSC
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCCCeEEEEEEcCCCCccchh
Confidence            56888999999999888888889999999999998642   110   11222222222 1122346889999963211 1


Q ss_pred             CCcccchHHHHHHHHHHc-------CCcEEEEcCCCCcCHHHHHHH
Q 023335          220 PDLQWTIATQARAYAKAM-------KATLFFSSATHNINVNKIFKF  258 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~lf~~  258 (283)
                      +..-..+.+++..+.+..       .++++++||++|+||.++++.
T Consensus       181 e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         181 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            111112234444444443       246899999999999876543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1.6e-12  Score=108.54  Aligned_cols=149  Identities=10%  Similarity=0.038  Sum_probs=95.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcC--c--------------------cc----------cccccceeeeeEEEEEECC
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGN--E--------------------QE----------RSLQMAGLNLINKTLMVQG  144 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~--~--------------------~~----------~~~~t~~~~~~~~~~~~~~  144 (283)
                      ...++|+++|...+|||||+ +++..  .                    +.          +......++.....+..++
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            44689999999999999999 88521  0                    00          0001122233333444444


Q ss_pred             eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhh-------HHHHHHHHHHHHhHCCCCce-EEEeecCCCCC
Q 023335          145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT-------LNSIVGWYSEARKWNQTAIP-ILIGTKFDDFV  216 (283)
Q Consensus       145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s-------~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~  216 (283)
                        .++.|.||||+..|......-+..+|++|+|+|++...-       -+....|+ .++. . ..+. |++.||+|+. 
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~-~-gv~~iiv~iNKmD~~-  157 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT-L-GVRQLIVAVNKMDSV-  157 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH-T-TCCEEEEEEECGGGG-
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHH-c-CCCeEEEEEECCCCC-
Confidence              678889999999998888888899999999999986421       11222222 2222 1 3344 6789999962 


Q ss_pred             CCCCCcc--cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023335          217 RLPPDLQ--WTIATQARAYAKAMK-----ATLFFSSATHNINVNK  254 (283)
Q Consensus       217 ~l~~~~~--~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~  254 (283)
                        ..+..  ....++...+....+     ++++.+|+..|+|+-+
T Consensus       158 --~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         158 --KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             --CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence              21211  123456666776665     4578999999998644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.29  E-value=1e-11  Score=104.91  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=75.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC--ccc-----ccc------------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN--EQE-----RSL------------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~--~~~-----~~~------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      -+|+++|..++|||||+ +++..  ...     +.-            ....++.....+.+++.  +++++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~--~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH--RVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE--EEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccccc--ceeEEccCchhhh
Confidence            36999999999999999 88521  111     000            01122223334555654  5788999999999


Q ss_pred             ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      .......++-+|++|+|+|..+.-.-+....|... .++  +.|.+++.||+|.
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~-~~~--~~p~~i~iNk~D~  131 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVA-ERL--GLPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHT--TCCEEEEEECGGG
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHHhh-hhc--ccccccccccccc
Confidence            99888899999999999999987665555555433 322  4466899999995

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=4.2e-11  Score=107.17  Aligned_cols=161  Identities=12%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-ccccccee---eeeEEEEEECCeEEEEEEEeCCCCCCcccc-----hhhhcc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGL---NLINKTLMVQGARIAFSIWDVGGDSRSFDH-----VPIACK  169 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~  169 (283)
                      .++|+|+|.+|||||||+ .+++.... .....+|.   ......+...+ .-.+.+|||||.......     ....+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            689999999999999999 99875443 21111111   11112222221 123678999996543322     222356


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCC-----CCC-CCcccchHHHH----HHHHHHcCC
Q 023335          170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV-----RLP-PDLQWTIATQA----RAYAKAMKA  239 (283)
Q Consensus       170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~-----~l~-~~~~~~~~~~~----~~~~~~~~~  239 (283)
                      .+|.+|++.|..-.+  ++ ..++..+.+.  +.|.++|.||+|...     ..+ ........++.    ....+..++
T Consensus       135 ~~d~~l~~~~~~~~~--~d-~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~  209 (400)
T d1tq4a_         135 EYDFFIIISATRFKK--ND-IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  209 (400)
T ss_dssp             GCSEEEEEESSCCCH--HH-HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cceEEEEecCCCCCH--HH-HHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            788888887743222  22 2444555543  456789999999410     000 00011111222    222333343


Q ss_pred             ---cEEEEcCCC--CcCHHHHHHHHHHHHhCC
Q 023335          240 ---TLFFSSATH--NINVNKIFKFIMAKLFNL  266 (283)
Q Consensus       240 ---~~~e~Sa~~--~~~v~~lf~~l~~~i~~~  266 (283)
                         ++|.+|..+  ..++.++.+.+.+.+.+.
T Consensus       210 ~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         210 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence               578888765  448999999988876543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=7.5e-11  Score=99.85  Aligned_cols=127  Identities=16%  Similarity=0.153  Sum_probs=83.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC--ccc-----cc-------c---c--cceeeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN--EQE-----RS-------L---Q--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  161 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~--~~~-----~~-------~---~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  161 (283)
                      +|+++|..++|||||+ +++..  ...     +.       .   .  ...+......+.+++  .+++|+||||...|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhhH
Confidence            6999999999999999 88531  111     00       0   0  111222223444555  557889999999999


Q ss_pred             cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023335          162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT  240 (283)
Q Consensus       162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~  240 (283)
                      ......++-+|++|+|+|..+.-.-+...-|-. .+.+  +.|.|++.||.|.    +.   ....+...++-+.++..
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~~~--~lP~i~fINKmDr----~~---ad~~~~l~ei~~~l~~~  154 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDK----TG---ADLWLVIRTMQERLGAR  154 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HHTT--TCCEEEEEECTTS----TT---CCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HHHc--CCCEEEEEecccc----cc---cccchhHHHHHHHhCCC
Confidence            999999999999999999998765555555533 3322  4566899999994    22   12244444555555543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.8e-10  Score=100.36  Aligned_cols=112  Identities=14%  Similarity=0.204  Sum_probs=78.2

Q ss_pred             ee-EEEEEcCCCCcHHHhH-hhhcC--ccc----------cccc---cceeeee--EEEEEE--------------CCeE
Q 023335          100 SL-KISLLGDCQIGKTSFV-KYVGN--EQE----------RSLQ---MAGLNLI--NKTLMV--------------QGAR  146 (283)
Q Consensus       100 ~~-KI~vlG~~~vGKSSLi-~~~~~--~~~----------~~~~---t~~~~~~--~~~~~~--------------~~~~  146 (283)
                      .+ +|+|+|..++|||||+ +++..  ...          ...+   ..|....  ...+..              +++.
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            45 5999999999999999 98621  110          0000   0111111  112211              3457


Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD  214 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL  214 (283)
                      +.++++||||+..|.......++-+|++|+|+|+.+.-..+...-|......   +.|+|++.||+|.
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~---~~p~i~viNKiDr  160 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE---RIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCEEEEEEECHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc---CCCeEEEEECccc
Confidence            8899999999999999999999999999999999987766665555554433   4577899999994

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.09  E-value=7.7e-10  Score=92.96  Aligned_cols=114  Identities=18%  Similarity=0.061  Sum_probs=70.0

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc-------hhh-
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-------VPI-  166 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~-  166 (283)
                      ...++|+++|.+|||||||+ .+++....  ...+.+..+........++.  .+.++||||-......       ... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHHH
Confidence            34799999999999999999 99887644  33332223333445566764  4778999996432111       111 


Q ss_pred             -hcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCC---CCceEEEeecCCC
Q 023335          167 -ACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQ---TAIPILIGTKFDD  214 (283)
Q Consensus       167 -~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL  214 (283)
                       .....+++++|++++... +-++ ...+..+.....   ....|||.||+|+
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~~~~~~~ivv~t~~D~  159 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQF  159 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcchhhhhCEEEEEECccc
Confidence             124668899998886532 2222 223333333222   2356899999997

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.99  E-value=6.5e-10  Score=94.47  Aligned_cols=82  Identities=12%  Similarity=0.120  Sum_probs=57.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCe------------E---EEEEEEeCCCCCC---
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGA------------R---IAFSIWDVGGDSR---  159 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~------------~---~~l~i~Dt~G~~~---  159 (283)
                      .+||-+||.||||||||+ ++++.... ..||.+..+.....+.+++.            +   ..+.+.|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            579999999999999999 99988776 78886655555556665432            1   2588999999643   


Q ss_pred             -cccchhhh---cccCcEEEEEEECC
Q 023335          160 -SFDHVPIA---CKDAVAILFMFDLT  181 (283)
Q Consensus       160 -~~~~~~~~---~~~ad~iilv~D~~  181 (283)
                       ...+...|   ++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence             23444444   57999999999863

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.89  E-value=3.4e-10  Score=93.51  Aligned_cols=113  Identities=10%  Similarity=0.003  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCCCCcccchhh---hc--ccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDHVPI---AC--KDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL  218 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~---~~--~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l  218 (283)
                      ..+.+.|++|+..+......   ..  ...++++++.|...   +..+.........+.. .-..+.++|.||+|+   .
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ivvinK~D~---~  170 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKVDL---L  170 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCGGG---C
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH-HhCCCceeeeecccc---c
Confidence            34778899998764322211   11  24568899998753   3333222111111111 124456899999997   3


Q ss_pred             CCCcccchH------------------------HHHHHHHHH--cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          219 PPDLQWTIA------------------------TQARAYAKA--MKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       219 ~~~~~~~~~------------------------~~~~~~~~~--~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      +.+......                        .......+.  ..++++.+||++|+|+++++..|.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         171 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            221110000                        000111111  246789999999999999999887753

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=8.4e-09  Score=89.02  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=43.7

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEE----------------------ECCeEEEEEEEeCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLM----------------------VQGARIAFSIWDVGG  156 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~----------------------~~~~~~~l~i~Dt~G  156 (283)
                      +||.++|.||||||||+ .+++.+.. ..||.++.+.....+.                      .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999 99988766 8888444333222211                      011236789999998


Q ss_pred             CCC----cccchhhh---cccCcEEEEEEECCC
Q 023335          157 DSR----SFDHVPIA---CKDAVAILFMFDLTS  182 (283)
Q Consensus       157 ~~~----~~~~~~~~---~~~ad~iilv~D~~~  182 (283)
                      .-.    ...+...+   ++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            532    22333333   479999999999863

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.71  E-value=3.9e-08  Score=84.87  Aligned_cols=102  Identities=15%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335          147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI  226 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~  226 (283)
                      +.+.|.+|.|.-...   .....-+|.+++|......+..+.++.=+-+       ..-|+|.||+|+    ++.. ...
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE-------~aDi~vvNKaD~----~~~~-~~~  208 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE-------LADMIAVNKADD----GDGE-RRA  208 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH-------HCSEEEEECCST----TCCH-HHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhh-------hhheeeEecccc----ccch-HHH
Confidence            346677777653321   1233568999999998876544432211111       123899999995    2221 111


Q ss_pred             HHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          227 ATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       227 ~~~~~~~~~~----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      ......+...          +..+.+.+||++|+|++++++.|.+..
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         209 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            1111122221          345789999999999999999997654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=2.5e-08  Score=86.20  Aligned_cols=86  Identities=10%  Similarity=0.028  Sum_probs=48.6

Q ss_pred             hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCccc-chHHHHHHHHHH-------cC
Q 023335          167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW-TIATQARAYAKA-------MK  238 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~-~~~~~~~~~~~~-------~~  238 (283)
                      +...+|.+++|.+....+..+.++.-+-++       +-++|.||+|+    +..... ....+.......       +.
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~-------aDi~VvNKaD~----~~~~~~~~~~~~~~~al~~~~~~~~~w~  232 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLMEV-------ADLIVINKDDG----DNHTNVAIARHMYESALHILRRKYDEWQ  232 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHHH-------CSEEEECCCCT----TCHHHHHHHHHHHHHHHHHSCCSBTTBC
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhcc-------ccEEEEEeecc----cchHHHHHHHHHHHHHhhhcccCCCCCc
Confidence            456789999998765544433322222221       23889999995    221111 112222222221       23


Q ss_pred             CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335          239 ATLFFSSATHNINVNKIFKFIMAKL  263 (283)
Q Consensus       239 ~~~~e~Sa~~~~~v~~lf~~l~~~i  263 (283)
                      .+.+.|||.+|+||+++++.|.+..
T Consensus       233 p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         233 PRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            4688899999999999999987644

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.66  E-value=4.9e-08  Score=83.29  Aligned_cols=83  Identities=16%  Similarity=0.208  Sum_probs=61.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCcc-c-cccccceeeeeEEEEEECCe---------------EEEEEEEeCCCC----
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGD----  157 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~----  157 (283)
                      .+||-+||.||||||||+ .+++... . ..||.++.+.....+.+.+.               ...+++.|++|.    
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            479999999999999999 9987654 3 78886666655566666542               246888999974    


Q ss_pred             CCcccchhhh---cccCcEEEEEEECCC
Q 023335          158 SRSFDHVPIA---CKDAVAILFMFDLTS  182 (283)
Q Consensus       158 ~~~~~~~~~~---~~~ad~iilv~D~~~  182 (283)
                      .+...+...|   +++||+++.|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence            3344444454   489999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=7.8e-09  Score=87.40  Aligned_cols=148  Identities=16%  Similarity=0.166  Sum_probs=78.0

Q ss_pred             ChhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCC-CCc-------ccccccccCCCCCCCC
Q 023335            1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGK-QPA-------VRYQKLTRRSSSESSP   72 (283)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~-~~~-------~~~~~~~~~~~~~~~p   72 (283)
                      |||..+|+.+++.+.+..++.+|.|.-+..|...+.+.++.-. .+++..-.. ...       ..|.......-     
T Consensus         2 m~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp-~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i-----   75 (273)
T d1puja_           2 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKP-RIMLLNKADKADAAVTQQWKEHFENQGIRSL-----   75 (273)
T ss_dssp             TTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSC-EEEEEECGGGSCHHHHHHHHHHHHTTTCCEE-----
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCC-eEEEEECccCCchHHHHHHHHHHHhcCCccc-----
Confidence            9999999999999999999999999999999988877665321 122211111 000       00111000000     


Q ss_pred             CCcccccccccc----------ccccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEE
Q 023335           73 APDTMEAGLVEL----------SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLM  141 (283)
Q Consensus        73 ~p~~~~~g~~~~----------~~~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~  141 (283)
                       +..+..+....          ................++|+|+|-||||||||+ ++.+.+.....+..|.+.....+.
T Consensus        76 -~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~  154 (273)
T d1puja_          76 -SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK  154 (273)
T ss_dssp             -ECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred             -eeecccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE
Confidence             00000000000          000000001122345799999999999999999 999877653223333332222333


Q ss_pred             ECCeEEEEEEEeCCCCC
Q 023335          142 VQGARIAFSIWDVGGDS  158 (283)
Q Consensus       142 ~~~~~~~l~i~Dt~G~~  158 (283)
                      .+.   .+.++||||--
T Consensus       155 ~~~---~~~l~DTPGi~  168 (273)
T d1puja_         155 VGK---ELELLDTPGIL  168 (273)
T ss_dssp             ETT---TEEEEECCCCC
T ss_pred             CCC---CeEEecCCCcc
Confidence            322   26789999953

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=4.1e-06  Score=70.85  Aligned_cols=112  Identities=19%  Similarity=0.186  Sum_probs=66.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEE-------E---CC----------------------
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLM-------V---QG----------------------  144 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~-------~---~~----------------------  144 (283)
                      ..+|+|+|..++|||||+ .+++..+.  ...++|..........       +   .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            347999999999999999 99988863  4444432211111000       0   00                      


Q ss_pred             -----------------eEEEEEEEeCCCCCCc-------------ccchhhhcccCcE-EEEEEECCChhhHHHHHHHH
Q 023335          145 -----------------ARIAFSIWDVGGDSRS-------------FDHVPIACKDAVA-ILFMFDLTSRCTLNSIVGWY  193 (283)
Q Consensus       145 -----------------~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~-iilv~D~~~~~s~~~~~~~~  193 (283)
                                       ....+.++|+||-...             ..+...|+...+. +++|.+.+..-+-.....|.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             0113788999995321             1334556667765 55566665554444444555


Q ss_pred             HHHHhHCCCC-ceEEEeecCCC
Q 023335          194 SEARKWNQTA-IPILIGTKFDD  214 (283)
Q Consensus       194 ~~i~~~~~~~-~~ilvgnK~DL  214 (283)
                      +.+   .+.. ..++|.||+|+
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~  204 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDL  204 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGG
T ss_pred             HHh---CcCCCceeeEEecccc
Confidence            544   3333 45789999997

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.06  E-value=3.5e-06  Score=71.61  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE  125 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~  125 (283)
                      .+|+|+|+.++|||||| .+++..+.
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            47999999999999999 99987763

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.85  E-value=1.1e-05  Score=67.48  Aligned_cols=90  Identities=11%  Similarity=-0.001  Sum_probs=61.1

Q ss_pred             hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335          164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF  243 (283)
Q Consensus       164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e  243 (283)
                      ....++.+|+||+|.|+.++.+..+  ..+.   ++..++|.|+|.||+||   .+.    ...+...++.+..+...+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~---~~~~~Kp~IlVlNK~DL---v~~----~~~~~w~~~f~~~~~~~i~   76 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIE---DILKNKPRIMLLNKADK---ADA----AVTQQWKEHFENQGIRSLS   76 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHH---HHCSSSCEEEEEECGGG---SCH----HHHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHH---HHHcCCCeEEEEECccC---Cch----HHHHHHHHHHHhcCCccce
Confidence            3456899999999999988765432  1222   22336678999999997   221    1223333444555778999


Q ss_pred             EcCCCCcCHHHHHHHHHHHHhC
Q 023335          244 SSATHNINVNKIFKFIMAKLFN  265 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l~~~i~~  265 (283)
                      +|+.++.++.++.+.+.+.+.+
T Consensus        77 isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          77 INSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             eecccCCCccccchhhhhhhhh
Confidence            9999999988887777665544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.69  E-value=1e-05  Score=65.72  Aligned_cols=88  Identities=9%  Similarity=0.089  Sum_probs=60.4

Q ss_pred             hcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335          167 ACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS  245 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S  245 (283)
                      ...+.|.+++|+++.+++ ++..+.+++-....  .+.+|+||.||+||   .++.......+...+.....|.+.+.+|
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL---~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDL---IEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGG---CCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccc---cccHHHHHHHHHHHHHHhhccccceeee
Confidence            346889999999998764 56666677665543  46688999999997   3322111112223334456689999999


Q ss_pred             CCCCcCHHHHHHHH
Q 023335          246 ATHNINVNKIFKFI  259 (283)
Q Consensus       246 a~~~~~v~~lf~~l  259 (283)
                      ++++.|++++.+.+
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999988876644

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=9.9e-05  Score=59.47  Aligned_cols=84  Identities=11%  Similarity=0.138  Sum_probs=58.5

Q ss_pred             hcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH--cCCcEEE
Q 023335          167 ACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA--MKATLFF  243 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~--~~~~~~e  243 (283)
                      ...+.|.+++|+++.+++ +...+.+|+-....  .+.+|+||.||+||   ..++    ..+....+...  .+.+.+.
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL---~~~~----~~~~~~~~~~~~~~~~~v~~   77 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDL---YDED----DLRKVRELEEIYSGLYPIVK   77 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGG---CCHH----HHHHHHHHHHHHTTTSCEEE
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCccc---CCHH----HHHHHHHhhcccccceeEEE
Confidence            346889999999998764 45566677765554  35688999999997   2211    12233333333  2467889


Q ss_pred             EcCCCCcCHHHHHHHH
Q 023335          244 SSATHNINVNKIFKFI  259 (283)
Q Consensus       244 ~Sa~~~~~v~~lf~~l  259 (283)
                      +|++++.|++++.+.+
T Consensus        78 vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          78 TSAKTGMGIEELKEYL   93 (225)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             eccccchhHhhHHHHh
Confidence            9999999999988765

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.54  E-value=7.1e-05  Score=59.71  Aligned_cols=92  Identities=11%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCCCCcccch----hhhc--------ccCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          147 IAFSIWDVGGDSRSFDHV----PIAC--------KDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~----~~~~--------~~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      ..+.++||+|...+....    ..+.        ...+-++||.|.+.. +....+...+..+      .+-=+|.||.|
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~~lI~TKlD  162 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------GLTGVIVTKLD  162 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------CCSEEEEECTT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------CCceEEEeccC
Confidence            457889999976543211    1111        134678899998754 3444444444433      23358999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      -      ..+   .-.+..++...+.++.+++.  |++.+++
T Consensus       163 e------t~~---~G~~l~~~~~~~~Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         163 G------TAK---GGVLIPIVRTLKVPIKFVGV--GEGPDDL  193 (207)
T ss_dssp             S------SCC---CTTHHHHHHHHCCCEEEEEC--SSSTTCE
T ss_pred             C------CCC---ccHHHHHHHHHCCCEEEEeC--CCChHhC
Confidence            3      111   23355667778999877774  5555544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=8.2e-05  Score=59.58  Aligned_cols=92  Identities=15%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCCCCcccch----hhhcc--------cCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          147 IAFSIWDVGGDSRSFDHV----PIACK--------DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~----~~~~~--------~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      +.+.++||+|...+....    ..+.+        ..+-.+||.|.+.. +.+..+...+..      -.+-=+|.||.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~------~~~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEA------VNVTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHH------SCCCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccc------cCCceEEEeccc
Confidence            457889999965543211    11111        13568899998654 333333333222      123359999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      -      ..   ..-.+...+...+.|+.+++  +|++++++
T Consensus       168 e------~~---~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         168 G------TA---KGGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             G------CS---CTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             C------CC---cccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            3      11   13446667778899988877  46666554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.43  E-value=0.00018  Score=57.24  Aligned_cols=101  Identities=12%  Similarity=0.153  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCCCCcccchh----hh--cccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDHVP----IA--CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP  219 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~----~~--~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~  219 (283)
                      ..+.++||+|...+....-    .+  ..+.+-+++|.|.+... ..+.+..+++.+      .+-=+|.||.|-     
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~------~~~~~I~TKlDe-----  161 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------GVTGLVLTKLDG-----  161 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT------CCCEEEEECGGG-----
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC------CCCeeEEeecCc-----
Confidence            4578899999765433111    11  23567889999986553 333333332221      122499999992     


Q ss_pred             CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH----HHHHHHHHh
Q 023335          220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI----FKFIMAKLF  264 (283)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l----f~~l~~~i~  264 (283)
                       ..   ..-.+..++...+.|+.+++.  |+..+++    -+.+++.++
T Consensus       162 -~~---~~G~~l~~~~~~~~Pi~~i~~--Gq~pedl~~~~~~~l~~~lL  204 (207)
T d1ls1a2         162 -DA---RGGAALSARHVTGKPIYFAGV--SEKPEGLEPFYPERLAGRIL  204 (207)
T ss_dssp             -CS---SCHHHHHHHHHHCCCEEEEC--------CCEECCHHHHHHHHT
T ss_pred             -cc---cchHHHHHHHHHCCCEEEEeC--CCChhhcccCCHHHHHHHHh
Confidence             11   135566777888998877753  4445443    244555544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=3.4e-05  Score=61.78  Aligned_cols=92  Identities=12%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCCCCcccc----hhh---hcc-----cCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          147 IAFSIWDVGGDSRSFDH----VPI---ACK-----DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~----~~~---~~~-----~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      +.+.++||+|.......    ...   ..+     ..+-+++|.|.+.. +....+...++.+      .+-=+|.||.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~~lIlTKlD  165 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------GLTGITLTKLD  165 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------CCCEEEEECCT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------CCceEEEeecC
Confidence            35788999996443211    111   112     24578899998653 3344433333321      23359999999


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                      -      ..+   .-.+...+...++++.+++  +|++|+++
T Consensus       166 e------~~~---~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         166 G------TAK---GGVIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             T------CTT---TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             C------CCC---ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            3      111   3456667778899988877  56666553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.33  E-value=8.8e-05  Score=59.32  Aligned_cols=92  Identities=15%  Similarity=0.146  Sum_probs=55.5

Q ss_pred             EEEEEEeCCCCCCcccc------hhhhc--ccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335          147 IAFSIWDVGGDSRSFDH------VPIAC--KDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR  217 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~------~~~~~--~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~  217 (283)
                      ..+.++||+|...+...      ...+.  -..+-+++|.|.+... ..+.+...+..      ..+-=+|.||.|.   
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~------~~~~~lI~TKlDe---  165 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA------SKIGTIIITKMDG---  165 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH------CTTEEEEEECTTS---
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc------cCcceEEEecccC---
Confidence            45788999997554321      11111  2356788999887543 33333222221      2233488999993   


Q ss_pred             CCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335          218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI  255 (283)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  255 (283)
                         .   ...-.+..++...++++.++|  +|++|+++
T Consensus       166 ---t---~~~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         166 ---T---AKGGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             ---C---SCHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             ---C---CcccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence               1   125667777888899988877  47777653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00014  Score=58.48  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCccc--cccc-cc--e--eeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MA--G--LNLINKTLMVQGARIAFSIWDVGGDSRS  160 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t~--~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  160 (283)
                      ..+++|.+|||||||+ ++......  .... ..  |  .+....-+.+++.   -.++||||-..+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            5689999999999999 88765322  1111 11  1  1112223445432   256899997654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.89  E-value=0.00018  Score=55.00  Aligned_cols=21  Identities=43%  Similarity=0.672  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +||+|+|++|+|||||+ .+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            58999999999999999 7764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0013  Score=52.69  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ++|-|.-|+|||||+ +++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            578899999999999 98764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.74  E-value=0.00029  Score=56.83  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      ..+++|.+|||||||+ ++....
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            5679999999999999 888753

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.57  E-value=0.00041  Score=52.87  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=18.9

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .-+|+|.|.+|||||||+ ++..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999 7654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.44  E-value=0.00068  Score=51.29  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhh
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ++.++|+|.|.+||||||+. .+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La   26 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHH
Confidence            45689999999999999999 654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.28  E-value=0.00076  Score=50.84  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..||+|.|.+||||||+. .+.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999 664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.001  Score=49.96  Aligned_cols=19  Identities=21%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++|+|.+|||||||+ +++.
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            789999999999999 8875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.07  E-value=0.0012  Score=50.47  Aligned_cols=20  Identities=30%  Similarity=0.393  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +||+|+|.|||||||+. .+.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            47999999999999999 653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.07  E-value=0.0013  Score=50.78  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +.++|+++|+|||||||+. .+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999 664

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.00  E-value=0.0018  Score=50.37  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.++|+|+|.|||||||+. .+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999 7654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.96  E-value=0.0015  Score=48.24  Aligned_cols=19  Identities=21%  Similarity=0.480  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |+|.|.+|||||||+ ++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            778999999999999 8764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.96  E-value=0.0013  Score=49.81  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=17.3

Q ss_pred             EEE-EEcCCCCcHHHhH-hhhc
Q 023335          102 KIS-LLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~-vlG~~~vGKSSLi-~~~~  121 (283)
                      ||+ |+|.+|||||||+ +++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            554 9999999999999 8865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.93  E-value=0.0016  Score=49.94  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +||+|+|.|||||||+. .+..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            48999999999999999 6653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.90  E-value=0.0018  Score=49.65  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +||+|+|.|||||||+. .+.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999 664

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0021  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.0

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|+|.+||||||+. .+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999 6643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0019  Score=49.43  Aligned_cols=20  Identities=30%  Similarity=0.366  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +||+|+|.|||||||.. .+.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999 664

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.70  E-value=0.0018  Score=50.08  Aligned_cols=21  Identities=24%  Similarity=0.229  Sum_probs=18.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +++|+|+|++||||||+. .+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999 654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.60  E-value=0.0025  Score=47.69  Aligned_cols=19  Identities=16%  Similarity=0.377  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |+|.|.+||||||+. ++..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            889999999999999 7653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.57  E-value=0.0034  Score=48.50  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=18.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..-|+|+|+|||||||+. ++..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999 7754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0028  Score=47.82  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|.|.|++|+|||||+ .+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            4889999999999999 8763

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0027  Score=46.94  Aligned_cols=19  Identities=26%  Similarity=0.406  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|+++|.+||||||+. .+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La   23 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            5899999999999999 553

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.42  E-value=0.0031  Score=49.03  Aligned_cols=21  Identities=29%  Similarity=0.219  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .=|+++|.||||||||. ++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            34889999999999999 7763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.006  Score=46.49  Aligned_cols=21  Identities=19%  Similarity=0.252  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .=|+++|.+||||||+. ++..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999 8864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0059  Score=50.38  Aligned_cols=58  Identities=14%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCccc-c----c-cccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQE-R----S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  159 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~----~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  159 (283)
                      .=|.|+|+.++|||+|+ .+.+..+. .    . ..|.|+-.....+ .++....+.++||.|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            34669999999999999 99876643 1    1 1256665443332 234456678899998543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0039  Score=48.09  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.|+|+|+|||||||.. .+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999 6643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0039  Score=48.07  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      |+|+|++|||||||+ +++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999 87654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.14  E-value=0.0038  Score=47.03  Aligned_cols=16  Identities=31%  Similarity=0.301  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHhH
Q 023335          102 KISLLGDCQIGKTSFV  117 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi  117 (283)
                      +|+++|.+||||||+.
T Consensus         3 ~IvliG~~G~GKSTig   18 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIG   18 (165)
T ss_dssp             SEEEECSTTSSHHHHH
T ss_pred             cEEEECCCCCCHHHHH
Confidence            6999999999999988

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.95  E-value=0.0054  Score=46.58  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=16.1

Q ss_pred             eEEE-EEcCCCCcHHHhH-hhh
Q 023335          101 LKIS-LLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~-vlG~~~vGKSSLi-~~~  120 (283)
                      +||+ |.|.+||||||++ .+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3665 5699999999999 663

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.93  E-value=0.0054  Score=46.32  Aligned_cols=18  Identities=17%  Similarity=0.178  Sum_probs=15.7

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      |+|.|.+||||||++ ++.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            678899999999999 664

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.88  E-value=0.0052  Score=47.02  Aligned_cols=20  Identities=25%  Similarity=0.400  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      |+|+|++|||||||+ .+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999 77643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.0066  Score=47.30  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      +++++|++|||||+++ .+...-
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            6899999999999999 776543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.077  Score=41.94  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .+++.|++|+||||++ .+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999 77653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.74  E-value=0.0065  Score=46.99  Aligned_cols=19  Identities=26%  Similarity=0.476  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |+|+|++|||||||+ ++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            889999999999999 7754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0066  Score=46.56  Aligned_cols=20  Identities=20%  Similarity=0.468  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      |+|+|++||||+||+ +++..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999 88754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.0065  Score=45.44  Aligned_cols=19  Identities=21%  Similarity=0.308  Sum_probs=15.9

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++|+|.+||||||+. .+..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            557999999999999 7643

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0076  Score=48.65  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      +|+|+|..|+|||||++++.+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999944444

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.0063  Score=47.01  Aligned_cols=20  Identities=35%  Similarity=0.338  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+|+|+|||||||+. .+..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999 6643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.65  E-value=0.0066  Score=45.54  Aligned_cols=18  Identities=22%  Similarity=0.399  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHhH-hh
Q 023335          102 KISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~  119 (283)
                      +|+++|.+||||||+. .+
T Consensus         2 ~I~liG~~GsGKsTi~k~L   20 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARAL   20 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHH
Confidence            4899999999999998 55

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.57  E-value=0.0077  Score=45.11  Aligned_cols=19  Identities=21%  Similarity=0.312  Sum_probs=15.9

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |++.|.+||||||+. .+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            678899999999998 5543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.55  E-value=0.18  Score=40.38  Aligned_cols=86  Identities=17%  Similarity=0.146  Sum_probs=49.7

Q ss_pred             EEEEEEeCCCCCCccc-chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCC--ce-EEEeecCCCCCCCCCCc
Q 023335          147 IAFSIWDVGGDSRSFD-HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA--IP-ILIGTKFDDFVRLPPDL  222 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~-~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~-ilvgnK~DL~~~l~~~~  222 (283)
                      +.+.+.|+++.-.... .......-||.++++.+. +..++..+...+..+.......  .+ -+|.|+.+.    ..  
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~----~~--  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV----AN--  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS----SC--
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecC----CC--
Confidence            4577889886443222 222233457887777765 5667776666666666553322  22 278899883    11  


Q ss_pred             ccchHHHHHHHHHHcCCcEE
Q 023335          223 QWTIATQARAYAKAMKATLF  242 (283)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~  242 (283)
                         ..+..+++++..+.+++
T Consensus       189 ---~~~~~~~~~~~~~~~~~  205 (269)
T d1cp2a_         189 ---EYELLDAFAKELGSQLI  205 (269)
T ss_dssp             ---CHHHHHHHHHHHTCCEE
T ss_pred             ---ccchhhhhHhhcCCeEE
Confidence               13455666777776554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.54  E-value=0.0064  Score=49.11  Aligned_cols=20  Identities=30%  Similarity=0.208  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|++.|+||+|||||+ .+.+
T Consensus        34 ~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            3889999999999999 7754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.51  E-value=0.011  Score=44.19  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=17.6

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .+-|.++|.+||||||+. .+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            466889999999999998 553

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.0085  Score=49.11  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQ  124 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~  124 (283)
                      +++++|++|||||+++ .+...-.
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHH
Confidence            7899999999999999 7765433

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.39  E-value=0.0083  Score=44.83  Aligned_cols=19  Identities=32%  Similarity=0.380  Sum_probs=15.0

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |+|.|.+|+||||+. .+..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            445599999999999 6643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.0087  Score=46.98  Aligned_cols=20  Identities=15%  Similarity=0.247  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      |+|+|++|||||||+ +++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999 88754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.37  E-value=0.0093  Score=46.65  Aligned_cols=20  Identities=25%  Similarity=0.408  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+++
T Consensus        29 i~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            3679999999999999 6654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.30  E-value=0.01  Score=47.82  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      +++|+|+.|+|||||++++.+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999944433

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.011  Score=47.96  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      +++|+|+.|+|||||++++.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            688999999999999954443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.20  E-value=0.0094  Score=45.94  Aligned_cols=19  Identities=32%  Similarity=0.319  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      |+|+|+|||||||+. ++..
T Consensus        11 I~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            779999999999999 7754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.19  E-value=0.011  Score=48.11  Aligned_cols=20  Identities=20%  Similarity=0.496  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhHhhhc
Q 023335          102 KISLLGDCQIGKTSFVKYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~  121 (283)
                      +++|+|+.|+|||||++++.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~   62 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLIT   62 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHh
Confidence            68999999999999994443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.18  E-value=0.01  Score=46.55  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=18.6

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hhh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..++|+|-|++||||||+. .+.
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            4578889999999999999 553

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.07  E-value=0.011  Score=47.20  Aligned_cols=20  Identities=20%  Similarity=0.316  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+.++|+.|||||||+ .+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            3779999999999999 5544

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.05  E-value=0.012  Score=47.88  Aligned_cols=21  Identities=14%  Similarity=0.426  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhHhhhcC
Q 023335          102 KISLLGDCQIGKTSFVKYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi~~~~~  122 (283)
                      +++|+|..|+|||||++++.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            688999999999999944443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.01  E-value=0.012  Score=47.36  Aligned_cols=20  Identities=35%  Similarity=0.508  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|+|||||+ .+.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            3679999999999999 5554

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.96  E-value=0.012  Score=44.27  Aligned_cols=18  Identities=22%  Similarity=0.268  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCcHHHhH-hh
Q 023335          102 KISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~  119 (283)
                      .|+++|.+||||||+. .+
T Consensus         4 ~Iil~G~~GsGKSTia~~L   22 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGREL   22 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHH
Confidence            3789999999999998 55

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.95  E-value=0.012  Score=48.55  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++|+|+.|+|||||+ .+.+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            5889999999999999 5544

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.013  Score=46.91  Aligned_cols=20  Identities=20%  Similarity=0.463  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -++++|+.|||||||+ .+.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            3779999999999999 5543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.73  E-value=0.013  Score=46.65  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|+||+||||++ .+.+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999 6543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.69  E-value=0.013  Score=47.04  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+|.|++|+|||||+ ++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            4778999999999999 8764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.63  E-value=0.015  Score=46.68  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+.++|+.|+|||||+ .+.+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            3789999999999999 5544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.45  E-value=0.016  Score=46.61  Aligned_cols=20  Identities=15%  Similarity=0.238  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+.++|++|+|||||+ .+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            3679999999999999 5544

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.0093  Score=45.49  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=17.4

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..-|.+.|.+||||||+. .+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999 553

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.35  E-value=0.016  Score=45.98  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|+||+||||++ .+.+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            4899999999999999 5543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.25  E-value=0.014  Score=46.56  Aligned_cols=19  Identities=37%  Similarity=0.585  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.++|+.|+|||||+ .+.+
T Consensus        29 ~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            779999999999999 5554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.17  E-value=0.02  Score=46.04  Aligned_cols=20  Identities=35%  Similarity=0.456  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+.++|+.|+|||||+ .+.+
T Consensus        31 ~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            4779999999999999 5544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.11  E-value=0.03  Score=42.79  Aligned_cols=24  Identities=17%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             CceeeEEEEEcCCCCcHHHhH-hhh
Q 023335           97 DLVSLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus        97 ~~~~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ..+.+=|+|-|..||||||++ .+.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~   30 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFE   30 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHH
Confidence            344678999999999999999 554

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=92.95  E-value=0.038  Score=41.31  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .=|.+-|+=|+|||||+ .++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            34778999999999999 76644

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.89  E-value=0.023  Score=45.63  Aligned_cols=19  Identities=32%  Similarity=0.581  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.++|+.|+|||||+ .+.+
T Consensus        35 ~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            679999999999999 5554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.017  Score=46.12  Aligned_cols=19  Identities=26%  Similarity=0.641  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.++|+.|+|||||+ .+.+
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            779999999999999 6665

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=0.022  Score=45.47  Aligned_cols=20  Identities=30%  Similarity=0.247  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|++|+||||++ .+.+
T Consensus        54 ~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 7654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.76  E-value=0.022  Score=45.51  Aligned_cols=21  Identities=33%  Similarity=0.341  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -.++|.|++|+|||+++ .+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999 6654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.67  E-value=0.022  Score=47.40  Aligned_cols=20  Identities=25%  Similarity=0.519  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -|+++|+||||||.|. .+.+
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhh
Confidence            4789999999999999 7654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.60  E-value=0.024  Score=44.67  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|++|+|||+++ .+.+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            3899999999999999 6654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.54  E-value=0.024  Score=45.62  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..|++.|++|+|||+|+ .+.+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            46999999999999999 6653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.53  E-value=0.032  Score=42.24  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .+=|.|-|.+|||||||. ++.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999 764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.46  E-value=0.029  Score=44.96  Aligned_cols=19  Identities=26%  Similarity=0.335  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.++|+.|+|||||+ .+.+
T Consensus        31 ~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            569999999999999 5554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.26  E-value=0.017  Score=46.40  Aligned_cols=20  Identities=35%  Similarity=0.690  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+.++|+.|+|||||+ .+.+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            4789999999999999 5544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.22  E-value=0.032  Score=45.25  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+.++|+.|+|||||+ .+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            4779999999999999 5543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.03  Score=43.42  Aligned_cols=18  Identities=22%  Similarity=0.375  Sum_probs=15.1

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      |+|.|+|||||||+. .+.
T Consensus         6 I~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            567799999999999 554

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.10  E-value=0.033  Score=45.05  Aligned_cols=19  Identities=21%  Similarity=0.462  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.++|+.|+|||||+ .+.+
T Consensus        33 ~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHC
Confidence            679999999999999 5554

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.95  E-value=0.023  Score=48.91  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      ++++||++|||||+++ .+...
T Consensus        45 n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHH
Confidence            4689999999999998 76543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.035  Score=42.36  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCcc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNEQ  124 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~~  124 (283)
                      =+.|.|++|+|||+|. .++.+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3679999999999999 8875443

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.91  E-value=0.038  Score=42.04  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQ  124 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~  124 (283)
                      .=|++.|++|+||||+. .++....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            34889999999999999 8876543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.70  E-value=0.038  Score=43.28  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      =++|.|++|+|||+|. +++.+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            3679999999999999 887554

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.64  E-value=0.036  Score=44.42  Aligned_cols=19  Identities=32%  Similarity=0.399  Sum_probs=15.3

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +.+.|+||+|||+++ .+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            445699999999999 6654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.54  E-value=0.041  Score=42.36  Aligned_cols=19  Identities=32%  Similarity=0.359  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -|+|-|..||||||++ .+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            4889999999999999 554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.50  E-value=0.038  Score=43.71  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      =++|.|++|+|||+|. +++.+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            3679999999999999 887654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.38  E-value=0.047  Score=41.55  Aligned_cols=24  Identities=21%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQ  124 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~  124 (283)
                      .=|++.|++|+|||++. .++...+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            35889999999999999 9886554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.37  E-value=0.04  Score=44.28  Aligned_cols=20  Identities=30%  Similarity=0.501  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|++.|++|+|||+|+ .+.+
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            4899999999999999 7664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.27  E-value=0.041  Score=43.18  Aligned_cols=19  Identities=26%  Similarity=0.308  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++.|++|+||||++ .++.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            889999999999999 6654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.13  E-value=0.043  Score=42.97  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .+++.|++|+||||++ .+.+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4889999999999999 77653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.057  Score=41.83  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=17.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      ++-|.|-|.+|||||||. .+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            366889999999999999 663

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.01  E-value=0.045  Score=42.82  Aligned_cols=20  Identities=30%  Similarity=0.265  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|++|+||||++ .+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            3899999999999999 6543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.94  E-value=0.045  Score=45.87  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+|+|.|..|+|||||+ .++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            46999999999999999 7775

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.80  E-value=0.053  Score=40.93  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCcc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNEQ  124 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~~  124 (283)
                      .-|++.|++|+||||+. .++....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            46899999999999999 8876654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.44  E-value=0.055  Score=43.63  Aligned_cols=20  Identities=30%  Similarity=0.273  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|++.|++|+|||+|+ .+.+
T Consensus        40 giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHH
Confidence            5899999999999999 6654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=90.34  E-value=0.057  Score=43.61  Aligned_cols=20  Identities=25%  Similarity=0.394  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+++.|++|+|||+++ .+.+
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            5899999999999999 6653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.24  E-value=0.063  Score=41.84  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ..=|.+.|.+|+|||||. .+..
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            455889999999999999 7654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.12  E-value=0.062  Score=42.28  Aligned_cols=21  Identities=38%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      =++|.|++|+|||+|+ ++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4779999999999999 88765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.72  E-value=0.068  Score=41.73  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      =++|.|++|+|||+|. .+..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            3678999999999999 886543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.47  E-value=0.069  Score=46.68  Aligned_cols=19  Identities=26%  Similarity=0.566  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +|+++|++|||||-|+ ++.
T Consensus        51 NILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            7999999999999998 763

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.087  Score=41.23  Aligned_cols=20  Identities=40%  Similarity=0.576  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|+|-|..||||||++ .+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999 5543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=89.41  E-value=0.049  Score=45.50  Aligned_cols=19  Identities=26%  Similarity=0.436  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .|+++|++|+|||+|+ ++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            5899999999999999 764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.40  E-value=0.072  Score=41.19  Aligned_cols=18  Identities=33%  Similarity=0.204  Sum_probs=15.7

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      |+|-|..||||||++ .+.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            778899999999999 654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.30  E-value=0.075  Score=43.26  Aligned_cols=21  Identities=19%  Similarity=0.264  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcC
Q 023335          102 KISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      -|.|.|.+|+|||||+ .+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4779999999999999 77643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.14  E-value=0.086  Score=41.43  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhhcCc
Q 023335          102 KISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      =++|.|++|+|||+|. +++.+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            4779999999999999 987543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.08  E-value=0.021  Score=43.24  Aligned_cols=17  Identities=24%  Similarity=0.448  Sum_probs=14.7

Q ss_pred             EEEEcCCCCcHHHhH-hh
Q 023335          103 ISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~  119 (283)
                      .+|+|+.|+|||||+ .+
T Consensus        27 tvi~G~NGsGKStil~Ai   44 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAF   44 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            357899999999999 66

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.67  E-value=0.08  Score=42.85  Aligned_cols=20  Identities=20%  Similarity=0.240  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .|++.|++|+|||+|+ .+.+
T Consensus        43 giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHH
Confidence            4999999999999999 7654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.55  E-value=0.093  Score=40.63  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      =++|.|++|+|||+|. .++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999 8764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.094  Score=40.76  Aligned_cols=18  Identities=39%  Similarity=0.394  Sum_probs=15.0

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      |+|-|..||||||++ .+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            667799999999988 553

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=88.20  E-value=0.13  Score=38.84  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++=|.|.|.+||||||+. .|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999 6543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.70  E-value=0.087  Score=42.96  Aligned_cols=16  Identities=19%  Similarity=0.463  Sum_probs=14.7

Q ss_pred             EEEcCCCCcHHHhH-hh
Q 023335          104 SLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       104 ~vlG~~~vGKSSLi-~~  119 (283)
                      +++|+.|+||||++ .+
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            78999999999999 65

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.57  E-value=0.12  Score=41.49  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      ++|.|.+|+|||+|+ .+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            679999999999999 7764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=87.22  E-value=0.12  Score=43.85  Aligned_cols=20  Identities=20%  Similarity=0.240  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+++.|+||+|||+|. .+.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 6643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=87.07  E-value=0.19  Score=41.59  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.0

Q ss_pred             eeeEEEEEcCCCCcHHHhH-hh
Q 023335           99 VSLKISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus        99 ~~~KI~vlG~~~vGKSSLi-~~  119 (283)
                      ..+=|.|.|.+|||||||. .+
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L  100 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVL  100 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHH
Confidence            4678899999999999998 44

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.95  E-value=0.87  Score=32.85  Aligned_cols=48  Identities=8%  Similarity=0.058  Sum_probs=34.6

Q ss_pred             hhcccCcEEEEEEECCC-----hhh-----HHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          166 IACKDAVAILFMFDLTS-----RCT-----LNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~~-----~~s-----~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      ..++++|++++..-...     +..     ..-++++.+.+.+++++...++|.|=.|
T Consensus        64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD  121 (144)
T d1mlda1          64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN  121 (144)
T ss_dssp             HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHH
T ss_pred             HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence            34688999998865422     111     1234578888999999988899999888

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=86.67  E-value=0.14  Score=41.00  Aligned_cols=19  Identities=16%  Similarity=0.219  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      .+|.|.+|+|||+|+ .+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            668999999999999 8753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=86.35  E-value=0.15  Score=42.21  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .++++|++|||||.|. .+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHH
Confidence            4889999999999999 653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=85.04  E-value=0.18  Score=42.69  Aligned_cols=19  Identities=32%  Similarity=0.426  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      .++++|++|||||-|. ++.
T Consensus        70 niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHH
Confidence            5999999999999998 663

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.92  E-value=0.18  Score=42.73  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=14.5

Q ss_pred             EEEcCCCCcHHHhH-hh
Q 023335          104 SLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       104 ~vlG~~~vGKSSLi-~~  119 (283)
                      +|+|+.|+|||+++ .+
T Consensus        29 ~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEECSTTSSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            58899999999999 76

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.85  E-value=0.2  Score=38.67  Aligned_cols=20  Identities=5%  Similarity=0.124  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHhH-hhhc
Q 023335          102 KISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      -+++.|++|+|||+++ .+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            3899999999999999 7654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.60  E-value=0.31  Score=39.78  Aligned_cols=20  Identities=25%  Similarity=0.152  Sum_probs=17.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hh
Q 023335          100 SLKISLLGDCQIGKTSFV-KY  119 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~  119 (283)
                      .+=|.|-|.+|||||||. .+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHH
Confidence            577889999999999988 65

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=84.23  E-value=0.18  Score=41.22  Aligned_cols=23  Identities=13%  Similarity=0.127  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGNE  123 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~~  123 (283)
                      =|+.|+|++|+|||+|+ .+..+.
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHH
Confidence            38999999999999999 876543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=84.06  E-value=0.23  Score=41.32  Aligned_cols=19  Identities=26%  Similarity=0.342  Sum_probs=15.1

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++.|+||+|||.|. .+.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            344699999999999 6654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.91  E-value=0.23  Score=38.81  Aligned_cols=19  Identities=32%  Similarity=0.691  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHhH-hhh
Q 023335          102 KISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       102 KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -|+|=|..||||||++ .+.
T Consensus         4 ~IviEG~~GsGKST~~~~L~   23 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLT   23 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            4788999999999999 554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=0.23  Score=39.13  Aligned_cols=19  Identities=26%  Similarity=0.284  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHhH-hhhc
Q 023335          103 ISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~  121 (283)
                      +++.|++|+|||+++ .+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            788999999999999 6543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=83.83  E-value=0.25  Score=41.23  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             ceeeEEEEEcCCCCcHHHhH-hhhc
Q 023335           98 LVSLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus        98 ~~~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +..++|+|=|.-||||||++ .+..
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999 6643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=83.79  E-value=0.2  Score=40.51  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=13.4

Q ss_pred             EEEEcCCCCcHHHhH
Q 023335          103 ISLLGDCQIGKTSFV  117 (283)
Q Consensus       103 I~vlG~~~vGKSSLi  117 (283)
                      ++|+|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678999999999876

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.74  E-value=0.23  Score=38.59  Aligned_cols=20  Identities=25%  Similarity=0.348  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      +.+.|++|+|||-|+ .+.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999 76553

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.27  E-value=0.15  Score=41.67  Aligned_cols=18  Identities=22%  Similarity=0.418  Sum_probs=13.4

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      |.|.|.+||||||+. .+.
T Consensus         7 IgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEESCC---CCTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            889999999999999 763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=83.23  E-value=0.23  Score=40.48  Aligned_cols=15  Identities=20%  Similarity=0.414  Sum_probs=13.7

Q ss_pred             EEEEcCCCCcHHHhH
Q 023335          103 ISLLGDCQIGKTSFV  117 (283)
Q Consensus       103 I~vlG~~~vGKSSLi  117 (283)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999876

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.07  E-value=0.26  Score=38.19  Aligned_cols=18  Identities=28%  Similarity=0.191  Sum_probs=15.7

Q ss_pred             EEEEcCCCCcHHHhH-hhh
Q 023335          103 ISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~  120 (283)
                      |++=|..||||||++ .+.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            789999999999998 553

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.73  E-value=0.29  Score=39.53  Aligned_cols=112  Identities=12%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             EEEEEEeCCCCCCcccchhhh-cccCcEEEEEEECCChhhHHHHHHHHHHHHhHC--CCCce-EEEeecCCCCCCCCCCc
Q 023335          147 IAFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIP-ILIGTKFDDFVRLPPDL  222 (283)
Q Consensus       147 ~~l~i~Dt~G~~~~~~~~~~~-~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~-ilvgnK~DL~~~l~~~~  222 (283)
                      +.+.++|+++.-......... ...++.++++.. .+..++..+....+.+.+..  .+... -+|.|+.+.    .   
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~----~---  190 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT----D---  190 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC----T---
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcc----h---
Confidence            456788887654322222222 234566665543 44556666666555555432  22222 388999872    1   


Q ss_pred             ccchHHHHHHHHHHcCCcEEEE---------cCCC---------CcCHHHHHHHHHHHHhCCcc
Q 023335          223 QWTIATQARAYAKAMKATLFFS---------SATH---------NINVNKIFKFIMAKLFNLPW  268 (283)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~e~---------Sa~~---------~~~v~~lf~~l~~~i~~~~~  268 (283)
                        ...+...++++.++.+++.+         +...         +....+-|..|.+.+.+++.
T Consensus       191 --~~~~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~  252 (289)
T d2afhe1         191 --REDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKL  252 (289)
T ss_dssp             --THHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCC
T ss_pred             --hhHHHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCC
Confidence              11344566677777665431         1111         22344568888888887664

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=82.43  E-value=0.35  Score=40.34  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhc
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      .++|+|=|.-||||||++ .+..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            589999999999999999 6654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=81.84  E-value=0.34  Score=40.35  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhh
Q 023335          100 SLKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      -++|+|=|.-||||||++ .+.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHT
T ss_pred             ceEEEEECCcCCCHHHHHHHHH
Confidence            478999999999999999 554

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=81.81  E-value=0.23  Score=38.29  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      --+++.|+++.|||.|+ .+++
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            35889999999999999 7754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=81.65  E-value=0.47  Score=36.22  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCcHHHhH-hhh
Q 023335          101 LKISLLGDCQIGKTSFV-KYV  120 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~  120 (283)
                      +-|.|.|..||||||+. .|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            55789999999999999 554

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=81.48  E-value=1.9  Score=30.70  Aligned_cols=47  Identities=11%  Similarity=0.152  Sum_probs=31.6

Q ss_pred             hcccCcEEEEEEECCChh---h-------HHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          167 ACKDAVAILFMFDLTSRC---T-------LNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       167 ~~~~ad~iilv~D~~~~~---s-------~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      .++++|.++++.-.....   .       ..-+.++.+.+.+++++...+++.|=+|
T Consensus        66 ~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd  122 (142)
T d1guza1          66 DTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD  122 (142)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHH
T ss_pred             HhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChH
Confidence            468899988886543211   1       1123467788888898887777878777

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=81.31  E-value=0.44  Score=36.53  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=17.2

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhc
Q 023335          101 LKISLLGDCQIGKTSFV-KYVG  121 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~  121 (283)
                      +-|.|.|..||||||+. .|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            44779999999999999 6643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=81.31  E-value=0.31  Score=41.73  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHhH-hhhcC
Q 023335          103 ISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       103 I~vlG~~~vGKSSLi-~~~~~  122 (283)
                      |+|.|+.|+||||.+ .++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999 87663

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=80.66  E-value=1.2  Score=32.37  Aligned_cols=48  Identities=23%  Similarity=0.228  Sum_probs=33.8

Q ss_pred             hhcccCcEEEEEEECC----------Ch-hhH----HHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          166 IACKDAVAILFMFDLT----------SR-CTL----NSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       166 ~~~~~ad~iilv~D~~----------~~-~s~----~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      ..++++|.+++..-..          ++ +-+    .-+.++.+.+.+++++...+++-|=+|
T Consensus        72 ~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd  134 (154)
T d1pzga1          72 AALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD  134 (154)
T ss_dssp             HHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH
T ss_pred             hhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHH
Confidence            3467889888877432          12 222    234578888999999888888888887

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=80.48  E-value=0.32  Score=41.50  Aligned_cols=23  Identities=13%  Similarity=0.211  Sum_probs=18.8

Q ss_pred             eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335          100 SLKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       100 ~~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      .-+++|+|.+|+|||+++ .++..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            346999999999999998 66543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.18  E-value=0.39  Score=38.28  Aligned_cols=41  Identities=5%  Similarity=-0.151  Sum_probs=23.2

Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335          171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD  213 (283)
Q Consensus       171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D  213 (283)
                      ++.+++|-. -+..++..+....+.+..+... ..-+|.|+.-
T Consensus       183 ~~~~vlV~~-p~~~~~~~~~r~~~~l~~~~~~-~~~iV~N~~~  223 (279)
T d1ihua2         183 RTKVLLVTL-PETTPVLEAANLQADLERAGIH-PWGWIINNSL  223 (279)
T ss_dssp             TEEEEEEEC-SSHHHHHHHHHHHHHHHHTTCC-CCEEEEEEES
T ss_pred             cccceEecc-ccHhHHHHHHHHHHHHHhcCCC-ccEEEEcCCc
Confidence            455566543 3456667777777666655421 1236678864

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.09  E-value=2.4  Score=34.00  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHhH-hhhcC
Q 023335          101 LKISLLGDCQIGKTSFV-KYVGN  122 (283)
Q Consensus       101 ~KI~vlG~~~vGKSSLi-~~~~~  122 (283)
                      =|+.|+|.+|+|||+|+ ....+
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            47889999999999999 65443